Multiple sequence alignment - TraesCS7B01G183000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G183000 chr7B 100.000 7966 0 0 1 7966 287170997 287163032 0.000000e+00 14711
1 TraesCS7B01G183000 chr7B 83.229 799 88 28 3 789 11676482 11677246 0.000000e+00 691
2 TraesCS7B01G183000 chr7B 82.699 815 88 24 3 789 117017249 117018038 0.000000e+00 675
3 TraesCS7B01G183000 chr7B 81.550 813 101 25 3 789 14192174 14192963 6.790000e-175 625
4 TraesCS7B01G183000 chr7B 83.445 743 44 25 4 720 13225208 13225897 1.140000e-172 617
5 TraesCS7B01G183000 chr7B 88.957 163 17 1 3156 3318 287167495 287167334 4.880000e-47 200
6 TraesCS7B01G183000 chr7B 88.957 163 17 1 3503 3664 287167842 287167680 4.880000e-47 200
7 TraesCS7B01G183000 chr7B 89.172 157 14 2 3008 3161 287167671 287167515 8.160000e-45 193
8 TraesCS7B01G183000 chr7B 89.172 157 14 2 3327 3483 287167990 287167837 8.160000e-45 193
9 TraesCS7B01G183000 chr7B 80.303 264 38 12 7709 7964 457796529 457796272 3.800000e-43 187
10 TraesCS7B01G183000 chr7B 79.375 160 19 8 7527 7676 731433122 731433277 5.090000e-17 100
11 TraesCS7B01G183000 chr7D 96.284 3741 87 18 3760 7467 317413848 317410127 0.000000e+00 6091
12 TraesCS7B01G183000 chr7D 95.623 1942 48 11 1670 3579 317429557 317427621 0.000000e+00 3081
13 TraesCS7B01G183000 chr7D 96.989 797 20 2 883 1679 317430375 317429583 0.000000e+00 1336
14 TraesCS7B01G183000 chr7D 79.583 960 135 34 3760 4678 353918890 353919829 1.460000e-176 630
15 TraesCS7B01G183000 chr7D 81.013 711 101 20 3860 4540 481157844 481157138 1.180000e-147 534
16 TraesCS7B01G183000 chr7D 86.192 449 40 9 7529 7964 317410031 317409592 4.350000e-127 466
17 TraesCS7B01G183000 chr7D 93.011 186 13 0 3574 3759 317414338 317414153 1.020000e-68 272
18 TraesCS7B01G183000 chr7D 91.083 157 11 2 3327 3483 317428192 317428039 8.100000e-50 209
19 TraesCS7B01G183000 chr7D 89.172 157 14 2 3008 3161 317427872 317427716 8.160000e-45 193
20 TraesCS7B01G183000 chr7D 87.805 164 18 2 3503 3664 317428044 317427881 2.930000e-44 191
21 TraesCS7B01G183000 chr7D 79.273 275 39 9 7709 7966 62255868 62255595 8.220000e-40 176
22 TraesCS7B01G183000 chr7A 95.860 2705 87 15 4205 6890 362740379 362743077 0.000000e+00 4351
23 TraesCS7B01G183000 chr7A 95.272 2094 61 13 1670 3759 362737329 362739388 0.000000e+00 3284
24 TraesCS7B01G183000 chr7A 91.171 589 30 7 6923 7507 362743073 362743643 0.000000e+00 780
25 TraesCS7B01G183000 chr7A 97.959 441 9 0 1239 1679 362736863 362737303 0.000000e+00 765
26 TraesCS7B01G183000 chr7A 97.111 450 12 1 3760 4208 362739693 362740142 0.000000e+00 758
27 TraesCS7B01G183000 chr7A 80.583 824 115 17 3760 4552 32186674 32185865 1.910000e-165 593
28 TraesCS7B01G183000 chr7A 81.481 648 81 22 3917 4534 391902236 391902874 5.550000e-136 496
29 TraesCS7B01G183000 chr7A 94.538 238 8 2 877 1114 362736221 362736453 5.880000e-96 363
30 TraesCS7B01G183000 chr7A 87.923 207 21 3 7529 7733 362743773 362743977 2.870000e-59 241
31 TraesCS7B01G183000 chr7A 91.925 161 11 1 3156 3316 362739133 362739291 2.890000e-54 224
32 TraesCS7B01G183000 chr7A 91.720 157 10 2 3327 3483 362738638 362738791 1.740000e-51 215
33 TraesCS7B01G183000 chr7A 89.172 157 14 2 3008 3161 362738957 362739113 8.160000e-45 193
34 TraesCS7B01G183000 chr7A 77.323 269 51 8 7703 7964 219129516 219129781 4.980000e-32 150
35 TraesCS7B01G183000 chr2B 85.470 819 67 22 3 793 602258150 602257356 0.000000e+00 806
36 TraesCS7B01G183000 chr2B 82.609 805 96 24 3 791 202593858 202594634 0.000000e+00 671
37 TraesCS7B01G183000 chr2B 88.350 206 22 2 586 789 732118002 732118207 6.170000e-61 246
38 TraesCS7B01G183000 chr2B 87.379 206 24 2 586 789 195813659 195813454 1.340000e-57 235
39 TraesCS7B01G183000 chr2B 80.321 249 30 11 7730 7964 90021 90264 3.820000e-38 171
40 TraesCS7B01G183000 chr2B 86.429 140 18 1 4541 4679 443782866 443782727 1.380000e-32 152
41 TraesCS7B01G183000 chr4D 81.742 953 118 30 3760 4678 297303932 297303002 0.000000e+00 745
42 TraesCS7B01G183000 chr4D 81.637 953 119 32 3761 4678 423864082 423863151 0.000000e+00 739
43 TraesCS7B01G183000 chr4D 79.649 285 38 15 7696 7966 132779708 132779986 3.800000e-43 187
44 TraesCS7B01G183000 chr5A 81.571 955 122 26 3760 4678 329233042 329232106 0.000000e+00 739
45 TraesCS7B01G183000 chr3B 81.489 940 131 24 3760 4678 279655572 279654655 0.000000e+00 732
46 TraesCS7B01G183000 chr3B 80.947 824 112 25 3761 4553 58028975 58029784 1.900000e-170 610
47 TraesCS7B01G183000 chr3B 79.775 623 39 36 184 769 787920351 787920923 9.760000e-99 372
48 TraesCS7B01G183000 chr3B 78.131 567 54 30 184 715 787905531 787906062 6.040000e-76 296
49 TraesCS7B01G183000 chr3B 80.060 331 35 18 313 642 169748739 169748439 4.840000e-52 217
50 TraesCS7B01G183000 chr3B 80.836 287 32 10 7694 7965 531792169 531792447 3.770000e-48 204
51 TraesCS7B01G183000 chr3B 87.903 124 9 5 7846 7965 674441990 674442111 3.000000e-29 141
52 TraesCS7B01G183000 chr2D 81.408 952 120 27 3760 4676 218041094 218042023 0.000000e+00 725
53 TraesCS7B01G183000 chr2D 81.892 740 104 16 3760 4482 25632577 25631851 1.480000e-166 597
54 TraesCS7B01G183000 chr2D 83.333 324 36 11 469 785 378089201 378089513 4.710000e-72 283
55 TraesCS7B01G183000 chr2D 85.441 261 35 3 532 789 646303322 646303582 1.320000e-67 268
56 TraesCS7B01G183000 chr6B 81.191 957 120 32 3760 4679 54763311 54764244 0.000000e+00 715
57 TraesCS7B01G183000 chr6B 83.818 791 79 24 12 792 692461054 692461805 0.000000e+00 706
58 TraesCS7B01G183000 chr6B 89.655 87 9 0 7275 7361 592424365 592424451 2.350000e-20 111
59 TraesCS7B01G183000 chr1D 80.942 955 125 30 3760 4678 85516950 85517883 0.000000e+00 702
60 TraesCS7B01G183000 chr1D 76.440 972 144 51 3760 4678 83153668 83152729 1.580000e-121 448
61 TraesCS7B01G183000 chr1D 78.679 666 104 18 3760 4402 380607666 380607016 7.440000e-110 409
62 TraesCS7B01G183000 chr1D 83.265 245 34 4 3760 4004 82329104 82328867 1.350000e-52 219
63 TraesCS7B01G183000 chr1D 84.699 183 21 1 3760 3942 400390934 400391109 8.220000e-40 176
64 TraesCS7B01G183000 chr4A 80.713 954 133 26 3760 4678 320841571 320840634 0.000000e+00 695
65 TraesCS7B01G183000 chr4A 78.986 809 90 32 3 789 675946266 675947016 5.590000e-131 479
66 TraesCS7B01G183000 chr4A 80.859 512 51 26 4193 4685 207372241 207371758 7.600000e-95 359
67 TraesCS7B01G183000 chr4A 88.095 252 24 2 3760 4011 625759524 625759279 2.170000e-75 294
68 TraesCS7B01G183000 chr4A 80.741 270 38 7 7711 7966 72972154 72971885 1.750000e-46 198
69 TraesCS7B01G183000 chr4A 77.863 262 46 9 7713 7964 620584786 620585045 1.380000e-32 152
70 TraesCS7B01G183000 chr3D 80.741 945 132 27 3761 4677 323643176 323644098 0.000000e+00 691
71 TraesCS7B01G183000 chr3D 77.367 433 59 28 188 600 543926712 543927125 3.740000e-53 220
72 TraesCS7B01G183000 chr3D 81.026 195 28 6 4485 4678 541604072 541604258 6.440000e-31 147
73 TraesCS7B01G183000 chr5B 82.750 800 96 20 3 789 60912463 60913233 0.000000e+00 675
74 TraesCS7B01G183000 chr5B 80.864 810 89 24 6 789 491942155 491941386 1.930000e-160 577
75 TraesCS7B01G183000 chr5B 79.579 808 92 47 6 791 158778146 158777390 1.980000e-140 510
76 TraesCS7B01G183000 chr5B 86.585 410 54 1 3 411 461049162 461048753 1.220000e-122 451
77 TraesCS7B01G183000 chr5B 84.892 139 18 3 4542 4678 665976065 665975928 3.880000e-28 137
78 TraesCS7B01G183000 chr2A 82.139 823 103 24 3760 4552 676343716 676344524 0.000000e+00 665
79 TraesCS7B01G183000 chr2A 80.485 825 113 19 3760 4553 427511651 427512458 8.910000e-164 588
80 TraesCS7B01G183000 chr2A 78.231 735 104 37 3 715 541194723 541195423 3.440000e-113 420
81 TraesCS7B01G183000 chr2A 84.091 264 32 3 7711 7964 572439965 572440228 6.170000e-61 246
82 TraesCS7B01G183000 chr2A 80.928 194 28 3 7271 7461 712238423 712238610 2.320000e-30 145
83 TraesCS7B01G183000 chr3A 81.620 827 103 26 3760 4552 723358858 723358047 2.420000e-179 640
84 TraesCS7B01G183000 chr3A 81.319 819 106 23 3761 4549 728391722 728392523 8.780000e-174 621
85 TraesCS7B01G183000 chr3A 79.643 280 30 17 7689 7965 528524541 528524796 8.220000e-40 176
86 TraesCS7B01G183000 chr3A 80.090 221 26 10 7763 7966 371622435 371622654 1.790000e-31 148
87 TraesCS7B01G183000 chr3A 85.821 134 17 2 7721 7852 636997427 636997294 3.000000e-29 141
88 TraesCS7B01G183000 chrUn 81.550 813 101 25 3 789 84387237 84386448 6.790000e-175 625
89 TraesCS7B01G183000 chrUn 80.587 613 83 22 4079 4678 229259308 229259897 2.640000e-119 440
90 TraesCS7B01G183000 chrUn 87.234 141 13 4 4540 4678 308102153 308102290 1.070000e-33 156
91 TraesCS7B01G183000 chr4B 80.556 828 113 23 3760 4556 192119282 192118472 1.910000e-165 593
92 TraesCS7B01G183000 chr1A 78.782 952 139 35 3760 4676 59990748 59991671 1.490000e-161 580
93 TraesCS7B01G183000 chr1A 87.823 271 23 6 4721 4987 82131185 82130921 7.760000e-80 309
94 TraesCS7B01G183000 chr1A 78.571 238 34 5 7694 7915 505130305 505130541 3.000000e-29 141
95 TraesCS7B01G183000 chr6D 80.873 779 72 48 3 768 438402337 438403051 7.030000e-150 542
96 TraesCS7B01G183000 chr6D 77.723 606 90 23 4 600 430114739 430115308 5.960000e-86 329
97 TraesCS7B01G183000 chr1B 83.523 352 30 6 469 792 636740614 636740263 3.610000e-78 303
98 TraesCS7B01G183000 chr1B 76.531 294 52 11 7689 7966 550630221 550630513 2.320000e-30 145
99 TraesCS7B01G183000 chr5D 78.178 472 55 24 346 789 125485725 125486176 2.850000e-64 257
100 TraesCS7B01G183000 chr6A 82.449 245 26 9 7738 7966 15805248 15805005 1.750000e-46 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G183000 chr7B 287163032 287170997 7965 True 3099.400000 14711 91.2516 1 7966 5 chr7B.!!$R2 7965
1 TraesCS7B01G183000 chr7B 11676482 11677246 764 False 691.000000 691 83.2290 3 789 1 chr7B.!!$F1 786
2 TraesCS7B01G183000 chr7B 117017249 117018038 789 False 675.000000 675 82.6990 3 789 1 chr7B.!!$F4 786
3 TraesCS7B01G183000 chr7B 14192174 14192963 789 False 625.000000 625 81.5500 3 789 1 chr7B.!!$F3 786
4 TraesCS7B01G183000 chr7B 13225208 13225897 689 False 617.000000 617 83.4450 4 720 1 chr7B.!!$F2 716
5 TraesCS7B01G183000 chr7D 317409592 317414338 4746 True 2276.333333 6091 91.8290 3574 7964 3 chr7D.!!$R3 4390
6 TraesCS7B01G183000 chr7D 317427621 317430375 2754 True 1002.000000 3081 92.1344 883 3664 5 chr7D.!!$R4 2781
7 TraesCS7B01G183000 chr7D 353918890 353919829 939 False 630.000000 630 79.5830 3760 4678 1 chr7D.!!$F1 918
8 TraesCS7B01G183000 chr7D 481157138 481157844 706 True 534.000000 534 81.0130 3860 4540 1 chr7D.!!$R2 680
9 TraesCS7B01G183000 chr7A 362736221 362743977 7756 False 1117.400000 4351 93.2651 877 7733 10 chr7A.!!$F3 6856
10 TraesCS7B01G183000 chr7A 32185865 32186674 809 True 593.000000 593 80.5830 3760 4552 1 chr7A.!!$R1 792
11 TraesCS7B01G183000 chr7A 391902236 391902874 638 False 496.000000 496 81.4810 3917 4534 1 chr7A.!!$F2 617
12 TraesCS7B01G183000 chr2B 602257356 602258150 794 True 806.000000 806 85.4700 3 793 1 chr2B.!!$R3 790
13 TraesCS7B01G183000 chr2B 202593858 202594634 776 False 671.000000 671 82.6090 3 791 1 chr2B.!!$F2 788
14 TraesCS7B01G183000 chr4D 297303002 297303932 930 True 745.000000 745 81.7420 3760 4678 1 chr4D.!!$R1 918
15 TraesCS7B01G183000 chr4D 423863151 423864082 931 True 739.000000 739 81.6370 3761 4678 1 chr4D.!!$R2 917
16 TraesCS7B01G183000 chr5A 329232106 329233042 936 True 739.000000 739 81.5710 3760 4678 1 chr5A.!!$R1 918
17 TraesCS7B01G183000 chr3B 279654655 279655572 917 True 732.000000 732 81.4890 3760 4678 1 chr3B.!!$R2 918
18 TraesCS7B01G183000 chr3B 58028975 58029784 809 False 610.000000 610 80.9470 3761 4553 1 chr3B.!!$F1 792
19 TraesCS7B01G183000 chr3B 787920351 787920923 572 False 372.000000 372 79.7750 184 769 1 chr3B.!!$F5 585
20 TraesCS7B01G183000 chr3B 787905531 787906062 531 False 296.000000 296 78.1310 184 715 1 chr3B.!!$F4 531
21 TraesCS7B01G183000 chr2D 218041094 218042023 929 False 725.000000 725 81.4080 3760 4676 1 chr2D.!!$F1 916
22 TraesCS7B01G183000 chr2D 25631851 25632577 726 True 597.000000 597 81.8920 3760 4482 1 chr2D.!!$R1 722
23 TraesCS7B01G183000 chr6B 54763311 54764244 933 False 715.000000 715 81.1910 3760 4679 1 chr6B.!!$F1 919
24 TraesCS7B01G183000 chr6B 692461054 692461805 751 False 706.000000 706 83.8180 12 792 1 chr6B.!!$F3 780
25 TraesCS7B01G183000 chr1D 85516950 85517883 933 False 702.000000 702 80.9420 3760 4678 1 chr1D.!!$F1 918
26 TraesCS7B01G183000 chr1D 83152729 83153668 939 True 448.000000 448 76.4400 3760 4678 1 chr1D.!!$R2 918
27 TraesCS7B01G183000 chr1D 380607016 380607666 650 True 409.000000 409 78.6790 3760 4402 1 chr1D.!!$R3 642
28 TraesCS7B01G183000 chr4A 320840634 320841571 937 True 695.000000 695 80.7130 3760 4678 1 chr4A.!!$R3 918
29 TraesCS7B01G183000 chr4A 675946266 675947016 750 False 479.000000 479 78.9860 3 789 1 chr4A.!!$F2 786
30 TraesCS7B01G183000 chr3D 323643176 323644098 922 False 691.000000 691 80.7410 3761 4677 1 chr3D.!!$F1 916
31 TraesCS7B01G183000 chr5B 60912463 60913233 770 False 675.000000 675 82.7500 3 789 1 chr5B.!!$F1 786
32 TraesCS7B01G183000 chr5B 491941386 491942155 769 True 577.000000 577 80.8640 6 789 1 chr5B.!!$R3 783
33 TraesCS7B01G183000 chr5B 158777390 158778146 756 True 510.000000 510 79.5790 6 791 1 chr5B.!!$R1 785
34 TraesCS7B01G183000 chr2A 676343716 676344524 808 False 665.000000 665 82.1390 3760 4552 1 chr2A.!!$F4 792
35 TraesCS7B01G183000 chr2A 427511651 427512458 807 False 588.000000 588 80.4850 3760 4553 1 chr2A.!!$F1 793
36 TraesCS7B01G183000 chr2A 541194723 541195423 700 False 420.000000 420 78.2310 3 715 1 chr2A.!!$F2 712
37 TraesCS7B01G183000 chr3A 723358047 723358858 811 True 640.000000 640 81.6200 3760 4552 1 chr3A.!!$R2 792
38 TraesCS7B01G183000 chr3A 728391722 728392523 801 False 621.000000 621 81.3190 3761 4549 1 chr3A.!!$F3 788
39 TraesCS7B01G183000 chrUn 84386448 84387237 789 True 625.000000 625 81.5500 3 789 1 chrUn.!!$R1 786
40 TraesCS7B01G183000 chrUn 229259308 229259897 589 False 440.000000 440 80.5870 4079 4678 1 chrUn.!!$F1 599
41 TraesCS7B01G183000 chr4B 192118472 192119282 810 True 593.000000 593 80.5560 3760 4556 1 chr4B.!!$R1 796
42 TraesCS7B01G183000 chr1A 59990748 59991671 923 False 580.000000 580 78.7820 3760 4676 1 chr1A.!!$F1 916
43 TraesCS7B01G183000 chr6D 438402337 438403051 714 False 542.000000 542 80.8730 3 768 1 chr6D.!!$F2 765
44 TraesCS7B01G183000 chr6D 430114739 430115308 569 False 329.000000 329 77.7230 4 600 1 chr6D.!!$F1 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 1103 0.107459 GTCTCATTGCTCCTCCCCAC 60.107 60.000 0.0 0.0 0.00 4.61 F
1237 1395 0.108019 GGGTTTTCAGAGTGGTCGGT 59.892 55.000 0.0 0.0 0.00 4.69 F
1442 1885 1.153745 CTCCCGCCTTTCGAGACAG 60.154 63.158 0.0 0.0 41.67 3.51 F
2336 2845 1.381928 TAGTCGTCCGTGATGCCTCC 61.382 60.000 0.0 0.0 0.00 4.30 F
2794 3305 1.948834 TGCCACAATGAACTGAGTGTG 59.051 47.619 0.0 0.0 40.73 3.82 F
3873 4690 1.112113 GCGACCCCTTGTCTGATCTA 58.888 55.000 0.0 0.0 42.13 1.98 F
5198 6345 1.337260 CCTTCTGTCAGCAAGTACGCT 60.337 52.381 0.0 0.0 45.21 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2287 2796 0.171903 CTTACAGGGCAGCATTGTGC 59.828 55.000 10.43 0.00 45.46 4.57 R
2313 2822 1.202371 GGCATCACGGACGACTATCAA 60.202 52.381 0.00 0.00 0.00 2.57 R
3082 3593 1.956477 GTGAATCTTGCCCTGTGTGTT 59.044 47.619 0.00 0.00 0.00 3.32 R
3620 4132 0.108089 GGGAAAAGACTCCGAGGAGC 60.108 60.000 18.37 11.36 45.54 4.70 R
4091 4932 0.468226 AGTGAACAGCGTTCCAAGGA 59.532 50.000 15.49 0.00 0.00 3.36 R
5497 6650 0.390472 CTGCCGTCCCTCTTTCTGTC 60.390 60.000 0.00 0.00 0.00 3.51 R
7144 8309 0.534203 GAGAACCGAGGTGCCAAACA 60.534 55.000 0.00 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 167 2.157834 ACGAATAGTGCCGTCAAACA 57.842 45.000 0.00 0.00 33.23 2.83
419 478 2.048597 CGACGCCCAGTAGCACAA 60.049 61.111 0.00 0.00 0.00 3.33
427 492 3.047877 AGTAGCACAAACGCCGCC 61.048 61.111 0.00 0.00 0.00 6.13
428 493 3.350612 GTAGCACAAACGCCGCCA 61.351 61.111 0.00 0.00 0.00 5.69
429 494 2.592001 TAGCACAAACGCCGCCAA 60.592 55.556 0.00 0.00 0.00 4.52
430 495 2.899044 TAGCACAAACGCCGCCAAC 61.899 57.895 0.00 0.00 0.00 3.77
432 497 3.893763 CACAAACGCCGCCAACCA 61.894 61.111 0.00 0.00 0.00 3.67
596 716 5.737290 CGAACTTTTTATTTGATCGCCGAAT 59.263 36.000 0.00 0.00 33.54 3.34
656 806 4.096732 GGGAACGGATCAAGTTTGAATG 57.903 45.455 7.16 0.00 41.13 2.67
793 947 3.093057 ACGAGTGGAGATGCTCTAACTT 58.907 45.455 0.00 0.00 31.36 2.66
794 948 3.511934 ACGAGTGGAGATGCTCTAACTTT 59.488 43.478 0.00 0.00 31.36 2.66
795 949 4.021016 ACGAGTGGAGATGCTCTAACTTTT 60.021 41.667 0.00 0.00 31.36 2.27
796 950 5.185249 ACGAGTGGAGATGCTCTAACTTTTA 59.815 40.000 0.00 0.00 31.36 1.52
797 951 5.746245 CGAGTGGAGATGCTCTAACTTTTAG 59.254 44.000 0.00 0.00 31.36 1.85
798 952 5.423886 AGTGGAGATGCTCTAACTTTTAGC 58.576 41.667 0.00 0.00 36.77 3.09
799 953 4.268884 GTGGAGATGCTCTAACTTTTAGCG 59.731 45.833 0.00 0.00 39.14 4.26
800 954 3.246463 GGAGATGCTCTAACTTTTAGCGC 59.754 47.826 0.00 0.00 39.14 5.92
801 955 4.116238 GAGATGCTCTAACTTTTAGCGCT 58.884 43.478 17.26 17.26 39.14 5.92
802 956 3.868077 AGATGCTCTAACTTTTAGCGCTG 59.132 43.478 22.90 5.37 39.14 5.18
803 957 3.040147 TGCTCTAACTTTTAGCGCTGT 57.960 42.857 22.90 6.17 39.14 4.40
804 958 2.993899 TGCTCTAACTTTTAGCGCTGTC 59.006 45.455 22.90 0.00 39.14 3.51
805 959 3.254892 GCTCTAACTTTTAGCGCTGTCT 58.745 45.455 22.90 0.00 0.00 3.41
806 960 4.082408 TGCTCTAACTTTTAGCGCTGTCTA 60.082 41.667 22.90 0.00 39.14 2.59
807 961 5.044558 GCTCTAACTTTTAGCGCTGTCTAT 58.955 41.667 22.90 4.36 0.00 1.98
808 962 5.520649 GCTCTAACTTTTAGCGCTGTCTATT 59.479 40.000 22.90 11.51 0.00 1.73
809 963 6.036191 GCTCTAACTTTTAGCGCTGTCTATTT 59.964 38.462 22.90 8.62 0.00 1.40
810 964 7.222224 GCTCTAACTTTTAGCGCTGTCTATTTA 59.778 37.037 22.90 9.32 0.00 1.40
811 965 8.991243 TCTAACTTTTAGCGCTGTCTATTTAA 57.009 30.769 22.90 0.00 0.00 1.52
812 966 9.426837 TCTAACTTTTAGCGCTGTCTATTTAAA 57.573 29.630 22.90 6.92 0.00 1.52
839 993 8.642908 AAAAACTTTTAGCGCTGTCTAAAATT 57.357 26.923 22.90 10.03 43.47 1.82
840 994 7.623268 AAACTTTTAGCGCTGTCTAAAATTG 57.377 32.000 22.90 10.06 43.47 2.32
841 995 5.699839 ACTTTTAGCGCTGTCTAAAATTGG 58.300 37.500 22.90 9.38 43.47 3.16
842 996 3.757745 TTAGCGCTGTCTAAAATTGGC 57.242 42.857 22.90 0.00 0.00 4.52
843 997 0.811281 AGCGCTGTCTAAAATTGGCC 59.189 50.000 10.39 0.00 0.00 5.36
844 998 0.523335 GCGCTGTCTAAAATTGGCCG 60.523 55.000 0.00 0.00 0.00 6.13
845 999 0.523335 CGCTGTCTAAAATTGGCCGC 60.523 55.000 0.00 0.00 0.00 6.53
846 1000 0.811281 GCTGTCTAAAATTGGCCGCT 59.189 50.000 0.00 0.00 0.00 5.52
847 1001 1.202188 GCTGTCTAAAATTGGCCGCTC 60.202 52.381 0.00 0.00 0.00 5.03
848 1002 2.083774 CTGTCTAAAATTGGCCGCTCA 58.916 47.619 0.00 0.00 0.00 4.26
849 1003 2.083774 TGTCTAAAATTGGCCGCTCAG 58.916 47.619 0.00 0.00 0.00 3.35
850 1004 2.290008 TGTCTAAAATTGGCCGCTCAGA 60.290 45.455 0.00 0.00 0.00 3.27
851 1005 2.747446 GTCTAAAATTGGCCGCTCAGAA 59.253 45.455 0.00 0.00 0.00 3.02
852 1006 3.190535 GTCTAAAATTGGCCGCTCAGAAA 59.809 43.478 0.00 0.00 0.00 2.52
853 1007 3.823873 TCTAAAATTGGCCGCTCAGAAAA 59.176 39.130 0.00 0.00 0.00 2.29
854 1008 3.467374 AAAATTGGCCGCTCAGAAAAA 57.533 38.095 0.00 0.00 0.00 1.94
880 1034 8.635877 AAAACAAACAAAGGGAAAAACAAAAC 57.364 26.923 0.00 0.00 0.00 2.43
885 1039 8.535592 CAAACAAAGGGAAAAACAAAACAAAAC 58.464 29.630 0.00 0.00 0.00 2.43
887 1041 7.772166 ACAAAGGGAAAAACAAAACAAAACAA 58.228 26.923 0.00 0.00 0.00 2.83
895 1049 6.724502 AAACAAAACAAAACAAACGCAAAG 57.275 29.167 0.00 0.00 0.00 2.77
945 1103 0.107459 GTCTCATTGCTCCTCCCCAC 60.107 60.000 0.00 0.00 0.00 4.61
946 1104 1.225704 CTCATTGCTCCTCCCCACC 59.774 63.158 0.00 0.00 0.00 4.61
947 1105 2.276309 CTCATTGCTCCTCCCCACCC 62.276 65.000 0.00 0.00 0.00 4.61
948 1106 2.204291 ATTGCTCCTCCCCACCCA 60.204 61.111 0.00 0.00 0.00 4.51
958 1116 3.009115 CCCACCCATCCCACTCGT 61.009 66.667 0.00 0.00 0.00 4.18
1178 1336 2.265739 GTCGGCATGAGGTGAGCA 59.734 61.111 0.00 0.00 0.00 4.26
1234 1392 3.341263 GGGGGTTTTCAGAGTGGTC 57.659 57.895 0.00 0.00 0.00 4.02
1237 1395 0.108019 GGGTTTTCAGAGTGGTCGGT 59.892 55.000 0.00 0.00 0.00 4.69
1442 1885 1.153745 CTCCCGCCTTTCGAGACAG 60.154 63.158 0.00 0.00 41.67 3.51
1483 1926 4.768583 AGCATTGGTGTGAATTTTGTGTT 58.231 34.783 0.00 0.00 0.00 3.32
1484 1927 4.810491 AGCATTGGTGTGAATTTTGTGTTC 59.190 37.500 0.00 0.00 0.00 3.18
1755 2237 8.986477 TGGACTTCTCAAAAGAAAAAGAAAAG 57.014 30.769 0.00 0.00 40.95 2.27
1930 2429 3.653835 ATCCAAAGAGGCCCTAAACTC 57.346 47.619 0.00 0.00 37.29 3.01
1941 2440 2.814336 GCCCTAAACTCTGTCTGTTTGG 59.186 50.000 0.00 0.00 38.02 3.28
2046 2551 6.642540 CAGGCGCTTCTTTTTCTAAATTTTCT 59.357 34.615 7.64 0.00 0.00 2.52
2047 2552 7.807907 CAGGCGCTTCTTTTTCTAAATTTTCTA 59.192 33.333 7.64 0.00 0.00 2.10
2131 2636 1.449246 GCAGCGCCAGAGAGACATT 60.449 57.895 2.29 0.00 0.00 2.71
2198 2705 6.325993 TCCATTTCCCTGATCTGTATTTGA 57.674 37.500 0.00 0.00 0.00 2.69
2287 2796 6.476243 ACAGTTTAGCAATAAAGTACACCG 57.524 37.500 0.00 0.00 0.00 4.94
2336 2845 1.381928 TAGTCGTCCGTGATGCCTCC 61.382 60.000 0.00 0.00 0.00 4.30
2451 2960 2.566724 ACATAATGTTTTGCACCAGGGG 59.433 45.455 0.00 0.00 0.00 4.79
2467 2976 2.789219 AGGGGATTAGGCCACTGTTAT 58.211 47.619 5.01 0.00 41.11 1.89
2490 2999 3.300009 CAACCTGAAAATGTGACTTCGC 58.700 45.455 0.00 0.00 0.00 4.70
2793 3304 2.346766 TGCCACAATGAACTGAGTGT 57.653 45.000 0.00 0.00 0.00 3.55
2794 3305 1.948834 TGCCACAATGAACTGAGTGTG 59.051 47.619 0.00 0.00 40.73 3.82
2885 3396 8.671921 TCTCAATCTTGCTTGAATATGAAGTTC 58.328 33.333 0.00 0.00 34.86 3.01
3063 3574 8.776376 ACATGAACAACAAGAAGAAAACAAAT 57.224 26.923 0.00 0.00 0.00 2.32
3082 3593 8.586879 AACAAATGGGAAATCAAAAGGAAAAA 57.413 26.923 0.00 0.00 0.00 1.94
3222 3734 8.846423 TTGAGAGATAGTTCTTCCCTAAATCT 57.154 34.615 0.00 0.00 30.30 2.40
3487 3999 5.711506 TGCATCTTAGATCCAACAAACACAT 59.288 36.000 0.00 0.00 0.00 3.21
3536 4048 3.133665 TCATCCCCAAATCCAAGGAGAT 58.866 45.455 0.00 0.00 0.00 2.75
3548 4060 2.225117 CCAAGGAGATGGGGTTTTGAGT 60.225 50.000 0.00 0.00 36.79 3.41
3580 4092 3.641906 TCCCTAAATCCGAAGAGATGGAC 59.358 47.826 0.00 0.00 37.02 4.02
3606 4118 7.937394 CGGTTTATATTCCAGAATCTTTACCCT 59.063 37.037 0.00 0.00 32.50 4.34
3614 4126 3.010138 CAGAATCTTTACCCTTGGGTGGA 59.990 47.826 20.78 15.20 0.00 4.02
3620 4132 4.018779 TCTTTACCCTTGGGTGGACTTATG 60.019 45.833 20.78 3.56 0.00 1.90
3635 4147 3.100671 ACTTATGCTCCTCGGAGTCTTT 58.899 45.455 14.08 0.79 43.70 2.52
3641 4153 1.903183 CTCCTCGGAGTCTTTTCCCTT 59.097 52.381 4.02 0.00 37.47 3.95
3662 4174 1.596934 GAGGTCTTGATCCCGCACA 59.403 57.895 0.00 0.00 0.00 4.57
3678 4190 2.804572 CGCACAGGGTGATAGATTGAGG 60.805 54.545 0.00 0.00 35.23 3.86
3873 4690 1.112113 GCGACCCCTTGTCTGATCTA 58.888 55.000 0.00 0.00 42.13 1.98
4055 4896 2.233922 CCCTGATCCAGTTCGTTACAGT 59.766 50.000 0.00 0.00 0.00 3.55
4061 4902 4.659111 TCCAGTTCGTTACAGTTTCAGA 57.341 40.909 0.00 0.00 0.00 3.27
4090 4931 2.700897 AGATGGTATGTGGGCTAGTGAC 59.299 50.000 0.00 0.00 0.00 3.67
4091 4932 2.247699 TGGTATGTGGGCTAGTGACT 57.752 50.000 0.00 0.00 0.00 3.41
4103 4944 1.546476 CTAGTGACTCCTTGGAACGCT 59.454 52.381 0.00 11.84 0.00 5.07
4657 5782 1.339644 CCATTGGCCCCCAGGAAATG 61.340 60.000 0.00 1.01 37.98 2.32
4923 6048 7.070571 TGTTTGGATCCTTACCACTTTTGAAAT 59.929 33.333 14.23 0.00 37.13 2.17
5095 6234 7.984391 TCCTTTCCTTGCAAAAATTTCTTTTC 58.016 30.769 0.00 0.00 33.44 2.29
5148 6291 7.735917 TGATCGAAGTATTCTTGTTATGGGAT 58.264 34.615 0.00 0.00 44.75 3.85
5154 6297 8.915057 AAGTATTCTTGTTATGGGATGATGAG 57.085 34.615 0.00 0.00 32.09 2.90
5158 6301 4.103153 TCTTGTTATGGGATGATGAGGTCC 59.897 45.833 0.00 0.00 0.00 4.46
5198 6345 1.337260 CCTTCTGTCAGCAAGTACGCT 60.337 52.381 0.00 0.00 45.21 5.07
5253 6400 4.660789 AGGAATACATCAAATTGCAGGC 57.339 40.909 0.00 0.00 0.00 4.85
5341 6494 9.461312 TGTTGCTATGGAACTATTTCTATTTGT 57.539 29.630 0.00 0.00 34.86 2.83
5497 6650 7.056800 GCTTGATGACGTTGTTATTTTGTTTG 58.943 34.615 0.00 0.00 0.00 2.93
5513 6666 2.143925 GTTTGACAGAAAGAGGGACGG 58.856 52.381 0.00 0.00 0.00 4.79
5598 6751 4.574828 GTGAGCCACTTCTGTAAAACTGAA 59.425 41.667 0.00 0.44 35.30 3.02
5601 6754 4.947388 AGCCACTTCTGTAAAACTGAAACA 59.053 37.500 1.84 0.00 35.99 2.83
5613 6766 5.695851 AAACTGAAACATAGCTGGTTGAG 57.304 39.130 0.00 3.97 39.01 3.02
5756 6909 5.097529 CGATGTTCCACATTTCATTCCTTG 58.902 41.667 0.00 0.00 39.27 3.61
5829 6982 9.903682 GATTCACATTGTATTATCCCTTTCATG 57.096 33.333 0.00 0.00 0.00 3.07
6163 7318 7.587037 TCCTTCTTTTCTGTCACATGATTTT 57.413 32.000 0.00 0.00 0.00 1.82
6177 7332 5.471116 CACATGATTTTCTCAGTTGGAGTCA 59.529 40.000 0.00 0.00 44.40 3.41
6381 7536 4.081917 CCCTCTCACTGTCCTCTTTAACTC 60.082 50.000 0.00 0.00 0.00 3.01
6620 7776 3.279434 GCTCAGTAACCTACATTTGGGG 58.721 50.000 0.00 0.00 0.00 4.96
6725 7882 9.971922 AAAGTTCTCTTCTGTTTAATCCAAATG 57.028 29.630 0.00 0.00 32.90 2.32
6730 7891 8.786898 TCTCTTCTGTTTAATCCAAATGTTCTG 58.213 33.333 0.00 0.00 0.00 3.02
6855 8016 0.473755 TGTTCTGGAAGGCTGCAAGA 59.526 50.000 0.00 0.00 34.07 3.02
6903 8064 2.548480 GGTCTCTTGTGTTGTAACTGCC 59.452 50.000 0.00 0.00 0.00 4.85
7063 8228 2.887783 TCTGATGGAGCGGAGTCTTATC 59.112 50.000 0.00 0.00 0.00 1.75
7144 8309 5.070001 TCTTGTGGCAAACTGTTATAGCTT 58.930 37.500 0.00 0.00 0.00 3.74
7161 8326 0.310854 CTTGTTTGGCACCTCGGTTC 59.689 55.000 0.00 0.00 0.00 3.62
7215 8380 8.292448 ACATTCATCATAGGATATTTCGTTTGC 58.708 33.333 0.00 0.00 30.87 3.68
7223 8388 3.489229 GGATATTTCGTTTGCTGGGAAGC 60.489 47.826 0.00 0.00 0.00 3.86
7234 8399 4.634012 TGCTGGGAAGCTTTCTAGTTTA 57.366 40.909 18.50 4.24 35.49 2.01
7324 8489 3.423154 CGCTGGTGGAAACCGAGC 61.423 66.667 8.41 8.41 33.58 5.03
7341 8506 0.976641 AGCTCCGACTTTGGTCATGA 59.023 50.000 0.00 0.00 42.21 3.07
7346 8511 0.320421 CGACTTTGGTCATGACGGGT 60.320 55.000 19.33 14.00 42.21 5.28
7370 8535 1.226745 CGGTGTCTACGCGCCATTA 60.227 57.895 5.73 0.00 38.88 1.90
7371 8536 1.477030 CGGTGTCTACGCGCCATTAC 61.477 60.000 5.73 0.00 38.88 1.89
7372 8537 1.149964 GGTGTCTACGCGCCATTACC 61.150 60.000 5.73 6.33 38.79 2.85
7373 8538 0.179119 GTGTCTACGCGCCATTACCT 60.179 55.000 5.73 0.00 0.00 3.08
7374 8539 0.533491 TGTCTACGCGCCATTACCTT 59.467 50.000 5.73 0.00 0.00 3.50
7375 8540 0.928229 GTCTACGCGCCATTACCTTG 59.072 55.000 5.73 0.00 0.00 3.61
7376 8541 0.533491 TCTACGCGCCATTACCTTGT 59.467 50.000 5.73 0.00 0.00 3.16
7377 8542 1.066716 TCTACGCGCCATTACCTTGTT 60.067 47.619 5.73 0.00 0.00 2.83
7378 8543 1.062002 CTACGCGCCATTACCTTGTTG 59.938 52.381 5.73 0.00 0.00 3.33
7379 8544 0.604243 ACGCGCCATTACCTTGTTGA 60.604 50.000 5.73 0.00 0.00 3.18
7380 8545 0.519519 CGCGCCATTACCTTGTTGAA 59.480 50.000 0.00 0.00 0.00 2.69
7381 8546 1.465689 CGCGCCATTACCTTGTTGAAG 60.466 52.381 0.00 0.00 0.00 3.02
7386 8563 4.082787 CGCCATTACCTTGTTGAAGACATT 60.083 41.667 0.00 0.00 38.26 2.71
7408 8585 2.584791 CTTTTGCGGTCATTTTCTCCG 58.415 47.619 0.00 0.00 45.94 4.63
7423 8600 1.000506 TCTCCGCGCTTAGACTGTTTT 59.999 47.619 5.56 0.00 0.00 2.43
7461 8670 2.987437 TCTGGGTATCCTAGATCGGACT 59.013 50.000 0.00 0.00 35.52 3.85
7462 8671 4.173594 TCTGGGTATCCTAGATCGGACTA 58.826 47.826 0.00 0.00 35.52 2.59
7463 8672 4.019501 TCTGGGTATCCTAGATCGGACTAC 60.020 50.000 0.00 0.00 35.52 2.73
7464 8673 3.269178 GGGTATCCTAGATCGGACTACG 58.731 54.545 0.00 0.00 46.11 3.51
7469 8678 2.437281 TCCTAGATCGGACTACGACCTT 59.563 50.000 0.00 0.00 45.20 3.50
7470 8679 2.548904 CCTAGATCGGACTACGACCTTG 59.451 54.545 0.00 0.00 45.20 3.61
7471 8680 2.414994 AGATCGGACTACGACCTTGA 57.585 50.000 0.00 0.00 45.20 3.02
7472 8681 2.933573 AGATCGGACTACGACCTTGAT 58.066 47.619 0.00 0.00 45.20 2.57
7473 8682 2.879646 AGATCGGACTACGACCTTGATC 59.120 50.000 0.00 0.00 45.20 2.92
7474 8683 3.433882 AGATCGGACTACGACCTTGATCT 60.434 47.826 0.00 0.00 45.20 2.75
7475 8684 5.515168 AGATCGGACTACGACCTTGATCTG 61.515 50.000 1.36 0.00 45.20 2.90
7476 8685 2.873133 GGACTACGACCTTGATCTGG 57.127 55.000 0.00 0.00 0.00 3.86
7477 8686 1.409427 GGACTACGACCTTGATCTGGG 59.591 57.143 9.52 6.63 0.00 4.45
7478 8687 2.100989 GACTACGACCTTGATCTGGGT 58.899 52.381 9.36 9.36 38.70 4.51
7479 8688 3.285484 GACTACGACCTTGATCTGGGTA 58.715 50.000 9.53 3.42 35.77 3.69
7480 8689 3.890147 GACTACGACCTTGATCTGGGTAT 59.110 47.826 9.53 5.18 35.77 2.73
7481 8690 3.890147 ACTACGACCTTGATCTGGGTATC 59.110 47.826 9.53 0.11 35.77 2.24
7482 8691 2.040178 ACGACCTTGATCTGGGTATCC 58.960 52.381 9.53 0.00 35.77 2.59
7483 8692 2.320781 CGACCTTGATCTGGGTATCCT 58.679 52.381 9.53 0.00 35.77 3.24
7484 8693 3.117246 ACGACCTTGATCTGGGTATCCTA 60.117 47.826 9.53 0.00 35.77 2.94
7485 8694 3.508012 CGACCTTGATCTGGGTATCCTAG 59.492 52.174 9.53 0.00 35.77 3.02
7486 8695 4.742012 GACCTTGATCTGGGTATCCTAGA 58.258 47.826 9.53 4.46 35.77 2.43
7487 8696 5.337788 GACCTTGATCTGGGTATCCTAGAT 58.662 45.833 13.11 13.11 35.77 1.98
7488 8697 5.337788 ACCTTGATCTGGGTATCCTAGATC 58.662 45.833 25.08 25.08 42.05 2.75
7489 8698 5.162826 ACCTTGATCTGGGTATCCTAGATCA 60.163 44.000 28.34 28.34 45.24 2.92
7490 8699 5.421693 CCTTGATCTGGGTATCCTAGATCAG 59.578 48.000 29.34 24.47 46.13 2.90
7491 8700 5.867757 TGATCTGGGTATCCTAGATCAGA 57.132 43.478 28.34 15.23 43.90 3.27
7492 8701 5.575157 TGATCTGGGTATCCTAGATCAGAC 58.425 45.833 28.34 13.08 43.90 3.51
7493 8702 4.390129 TCTGGGTATCCTAGATCAGACC 57.610 50.000 0.00 0.00 0.00 3.85
7498 8707 4.142790 GGTATCCTAGATCAGACCACGAA 58.857 47.826 0.00 0.00 0.00 3.85
7501 8710 1.067821 CCTAGATCAGACCACGAAGGC 59.932 57.143 0.00 0.00 43.14 4.35
7527 8778 1.331756 CGGTGCTGTATTCCTTCATGC 59.668 52.381 0.00 0.00 0.00 4.06
7539 8856 1.541147 CCTTCATGCGTCAATGTTGGT 59.459 47.619 0.00 0.00 0.00 3.67
7545 8862 1.862602 GCGTCAATGTTGGTGGGTCC 61.863 60.000 0.00 0.00 0.00 4.46
7592 8909 2.202932 GCGGATGCGTCTGGATGT 60.203 61.111 16.50 0.00 0.00 3.06
7596 8915 0.176680 GGATGCGTCTGGATGTGAGT 59.823 55.000 5.77 0.00 0.00 3.41
7618 8937 0.681564 AGGGCGGTTGTGTTGTTTGA 60.682 50.000 0.00 0.00 0.00 2.69
7619 8938 0.387565 GGGCGGTTGTGTTGTTTGAT 59.612 50.000 0.00 0.00 0.00 2.57
7621 8940 0.852136 GCGGTTGTGTTGTTTGATGC 59.148 50.000 0.00 0.00 0.00 3.91
7647 8966 2.962569 CGTCCTCGCAAGGTCAGA 59.037 61.111 0.00 0.00 43.82 3.27
7648 8967 1.513158 CGTCCTCGCAAGGTCAGAT 59.487 57.895 0.00 0.00 43.82 2.90
7649 8968 0.108615 CGTCCTCGCAAGGTCAGATT 60.109 55.000 0.00 0.00 43.82 2.40
7650 8969 1.363744 GTCCTCGCAAGGTCAGATTG 58.636 55.000 0.00 0.00 43.82 2.67
7651 8970 0.976641 TCCTCGCAAGGTCAGATTGT 59.023 50.000 0.00 0.00 43.82 2.71
7654 8973 2.146342 CTCGCAAGGTCAGATTGTGTT 58.854 47.619 0.00 0.00 38.85 3.32
7692 9011 1.026718 GGATTGTCTTCTGTGGCGGG 61.027 60.000 0.00 0.00 0.00 6.13
7733 9052 1.410850 CCGATATGTGCCCCAGACCT 61.411 60.000 0.00 0.00 0.00 3.85
7734 9053 1.338107 CGATATGTGCCCCAGACCTA 58.662 55.000 0.00 0.00 0.00 3.08
7735 9054 1.691976 CGATATGTGCCCCAGACCTAA 59.308 52.381 0.00 0.00 0.00 2.69
7752 9071 3.244630 ACCTAACATTACGGCTTGGTTGA 60.245 43.478 0.00 0.00 0.00 3.18
7753 9072 3.754323 CCTAACATTACGGCTTGGTTGAA 59.246 43.478 0.00 0.00 0.00 2.69
7782 9102 4.512571 AGCTTTAAATGTTTGGCTTTGCTG 59.487 37.500 0.00 0.00 0.00 4.41
7784 9104 5.731599 TTTAAATGTTTGGCTTTGCTGTG 57.268 34.783 0.00 0.00 0.00 3.66
7797 9117 4.331968 CTTTGCTGTGAGGTTTGGGTATA 58.668 43.478 0.00 0.00 0.00 1.47
7798 9118 3.343941 TGCTGTGAGGTTTGGGTATAC 57.656 47.619 0.00 0.00 0.00 1.47
7891 9221 9.952030 TTGATGTATTACTTTGTATGGTCTTGA 57.048 29.630 0.00 0.00 0.00 3.02
7923 9253 2.747396 AAAATGGTTGCATGCATCGT 57.253 40.000 23.37 15.17 0.00 3.73
7925 9255 0.457035 AATGGTTGCATGCATCGTCC 59.543 50.000 23.37 20.20 0.00 4.79
7926 9256 0.680601 ATGGTTGCATGCATCGTCCA 60.681 50.000 23.37 24.57 0.00 4.02
7927 9257 0.892814 TGGTTGCATGCATCGTCCAA 60.893 50.000 23.37 0.58 0.00 3.53
7938 9268 1.098050 ATCGTCCAAATGCAGAAGCC 58.902 50.000 0.00 0.00 41.13 4.35
7943 9273 1.978617 CAAATGCAGAAGCCGGGGT 60.979 57.895 2.18 0.00 41.13 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 167 0.319297 GTTGGTCCGTAGCAAGTCGT 60.319 55.000 0.00 0.00 38.37 4.34
176 177 1.299620 CAAGTCGACGTTGGTCCGT 60.300 57.895 10.46 0.00 45.18 4.69
266 268 2.657944 CTGCTCATCGCCGCTCTC 60.658 66.667 0.00 0.00 38.05 3.20
347 388 4.351938 CGTCGGCGTGGGAGTTGA 62.352 66.667 6.85 0.00 0.00 3.18
427 492 2.356194 GCGGCTTTTGGCTGGTTG 60.356 61.111 0.00 0.00 46.77 3.77
428 493 3.977244 CGCGGCTTTTGGCTGGTT 61.977 61.111 0.00 0.00 46.77 3.67
821 975 3.119637 GGCCAATTTTAGACAGCGCTAAA 60.120 43.478 10.99 7.26 38.27 1.85
822 976 2.422127 GGCCAATTTTAGACAGCGCTAA 59.578 45.455 10.99 0.00 0.00 3.09
823 977 2.014128 GGCCAATTTTAGACAGCGCTA 58.986 47.619 10.99 0.00 0.00 4.26
824 978 0.811281 GGCCAATTTTAGACAGCGCT 59.189 50.000 2.64 2.64 0.00 5.92
825 979 0.523335 CGGCCAATTTTAGACAGCGC 60.523 55.000 2.24 0.00 0.00 5.92
826 980 0.523335 GCGGCCAATTTTAGACAGCG 60.523 55.000 2.24 0.00 0.00 5.18
827 981 0.811281 AGCGGCCAATTTTAGACAGC 59.189 50.000 2.24 0.00 0.00 4.40
828 982 2.083774 TGAGCGGCCAATTTTAGACAG 58.916 47.619 2.24 0.00 0.00 3.51
829 983 2.083774 CTGAGCGGCCAATTTTAGACA 58.916 47.619 2.24 0.00 0.00 3.41
830 984 2.356135 TCTGAGCGGCCAATTTTAGAC 58.644 47.619 2.24 0.00 0.00 2.59
831 985 2.779755 TCTGAGCGGCCAATTTTAGA 57.220 45.000 2.24 0.00 0.00 2.10
832 986 3.848272 TTTCTGAGCGGCCAATTTTAG 57.152 42.857 2.24 0.00 0.00 1.85
833 987 4.592485 TTTTTCTGAGCGGCCAATTTTA 57.408 36.364 2.24 0.00 0.00 1.52
834 988 3.467374 TTTTTCTGAGCGGCCAATTTT 57.533 38.095 2.24 0.00 0.00 1.82
854 1008 9.088512 GTTTTGTTTTTCCCTTTGTTTGTTTTT 57.911 25.926 0.00 0.00 0.00 1.94
855 1009 8.251026 TGTTTTGTTTTTCCCTTTGTTTGTTTT 58.749 25.926 0.00 0.00 0.00 2.43
856 1010 7.772166 TGTTTTGTTTTTCCCTTTGTTTGTTT 58.228 26.923 0.00 0.00 0.00 2.83
857 1011 7.334844 TGTTTTGTTTTTCCCTTTGTTTGTT 57.665 28.000 0.00 0.00 0.00 2.83
858 1012 6.944234 TGTTTTGTTTTTCCCTTTGTTTGT 57.056 29.167 0.00 0.00 0.00 2.83
859 1013 8.535592 GTTTTGTTTTGTTTTTCCCTTTGTTTG 58.464 29.630 0.00 0.00 0.00 2.93
860 1014 8.251026 TGTTTTGTTTTGTTTTTCCCTTTGTTT 58.749 25.926 0.00 0.00 0.00 2.83
861 1015 7.772166 TGTTTTGTTTTGTTTTTCCCTTTGTT 58.228 26.923 0.00 0.00 0.00 2.83
862 1016 7.334844 TGTTTTGTTTTGTTTTTCCCTTTGT 57.665 28.000 0.00 0.00 0.00 2.83
863 1017 8.535592 GTTTGTTTTGTTTTGTTTTTCCCTTTG 58.464 29.630 0.00 0.00 0.00 2.77
864 1018 7.432545 CGTTTGTTTTGTTTTGTTTTTCCCTTT 59.567 29.630 0.00 0.00 0.00 3.11
865 1019 6.913132 CGTTTGTTTTGTTTTGTTTTTCCCTT 59.087 30.769 0.00 0.00 0.00 3.95
866 1020 6.431278 CGTTTGTTTTGTTTTGTTTTTCCCT 58.569 32.000 0.00 0.00 0.00 4.20
867 1021 5.115773 GCGTTTGTTTTGTTTTGTTTTTCCC 59.884 36.000 0.00 0.00 0.00 3.97
868 1022 5.681543 TGCGTTTGTTTTGTTTTGTTTTTCC 59.318 32.000 0.00 0.00 0.00 3.13
869 1023 6.718389 TGCGTTTGTTTTGTTTTGTTTTTC 57.282 29.167 0.00 0.00 0.00 2.29
870 1024 7.506296 TTTGCGTTTGTTTTGTTTTGTTTTT 57.494 24.000 0.00 0.00 0.00 1.94
871 1025 6.291322 GCTTTGCGTTTGTTTTGTTTTGTTTT 60.291 30.769 0.00 0.00 0.00 2.43
872 1026 5.172232 GCTTTGCGTTTGTTTTGTTTTGTTT 59.828 32.000 0.00 0.00 0.00 2.83
873 1027 4.672862 GCTTTGCGTTTGTTTTGTTTTGTT 59.327 33.333 0.00 0.00 0.00 2.83
874 1028 4.215201 GCTTTGCGTTTGTTTTGTTTTGT 58.785 34.783 0.00 0.00 0.00 2.83
875 1029 3.601636 GGCTTTGCGTTTGTTTTGTTTTG 59.398 39.130 0.00 0.00 0.00 2.44
880 1034 1.592543 GAGGGCTTTGCGTTTGTTTTG 59.407 47.619 0.00 0.00 0.00 2.44
885 1039 1.581447 GAGGAGGGCTTTGCGTTTG 59.419 57.895 0.00 0.00 0.00 2.93
887 1041 2.034221 GGAGGAGGGCTTTGCGTT 59.966 61.111 0.00 0.00 0.00 4.84
895 1049 1.124477 ATGGATTCGAGGAGGAGGGC 61.124 60.000 0.00 0.00 0.00 5.19
945 1103 0.390860 GATCTGACGAGTGGGATGGG 59.609 60.000 0.00 0.00 0.00 4.00
946 1104 1.339610 GAGATCTGACGAGTGGGATGG 59.660 57.143 0.00 0.00 0.00 3.51
947 1105 2.293122 GAGAGATCTGACGAGTGGGATG 59.707 54.545 0.00 0.00 0.00 3.51
948 1106 2.174639 AGAGAGATCTGACGAGTGGGAT 59.825 50.000 0.00 0.00 0.00 3.85
958 1116 1.202830 GCGGGGTAGAGAGAGATCTGA 60.203 57.143 0.00 0.00 0.00 3.27
1103 1261 0.396278 GCAATTGGAAGGAGAGGGGG 60.396 60.000 7.72 0.00 0.00 5.40
1178 1336 4.517832 GGACAAAAACCTAGAAATCGTGGT 59.482 41.667 0.00 0.00 0.00 4.16
1237 1395 1.393746 AGCCATCAGAGAGGGGTGA 59.606 57.895 1.27 0.00 42.67 4.02
1428 1871 1.337817 CGACACTGTCTCGAAAGGCG 61.338 60.000 7.58 0.00 42.69 5.52
1442 1885 2.994578 GCTTAGAGAAAAGGGACGACAC 59.005 50.000 0.00 0.00 0.00 3.67
1483 1926 6.600882 AGTTAGATCCTAACCGAAAAGTGA 57.399 37.500 11.86 0.00 0.00 3.41
1484 1927 6.402226 GCAAGTTAGATCCTAACCGAAAAGTG 60.402 42.308 11.86 3.28 0.00 3.16
1539 1982 3.744660 CAGAAAGAGCACCCTAAACTGT 58.255 45.455 0.00 0.00 0.00 3.55
1546 1989 1.294780 CGAGCAGAAAGAGCACCCT 59.705 57.895 0.00 0.00 0.00 4.34
1608 2051 6.737254 TCCAGCGTTTTTCCTATTTCTTAG 57.263 37.500 0.00 0.00 0.00 2.18
1755 2237 3.118482 TCTCATCATGAGCTCAAACCTCC 60.118 47.826 22.50 0.00 43.95 4.30
1898 2397 3.006859 CCTCTTTGGATTGTGGGGTTTTC 59.993 47.826 0.00 0.00 38.35 2.29
1930 2429 6.229733 AGAAGAAGAAGATCCAAACAGACAG 58.770 40.000 0.00 0.00 0.00 3.51
2063 2568 3.819564 TCTTGCAATAGATACCTGCGT 57.180 42.857 0.00 0.00 38.97 5.24
2131 2636 0.906066 TGGTCGATTCCCGGAATTCA 59.094 50.000 14.06 7.91 39.14 2.57
2198 2705 3.097342 AGTACGTCCAAGTCATACCCT 57.903 47.619 0.00 0.00 0.00 4.34
2287 2796 0.171903 CTTACAGGGCAGCATTGTGC 59.828 55.000 10.43 0.00 45.46 4.57
2313 2822 1.202371 GGCATCACGGACGACTATCAA 60.202 52.381 0.00 0.00 0.00 2.57
2336 2845 4.687948 CACAATAATATCGTCCCAGAGCAG 59.312 45.833 0.00 0.00 0.00 4.24
2451 2960 3.066760 GGTTGCATAACAGTGGCCTAATC 59.933 47.826 3.32 0.00 38.58 1.75
2467 2976 3.243035 CGAAGTCACATTTTCAGGTTGCA 60.243 43.478 0.00 0.00 0.00 4.08
2490 2999 4.109766 CACAAAGAATGGCATGCACTATG 58.890 43.478 21.36 10.75 39.88 2.23
2638 3147 2.514458 AACTGGGTTATTGGAGGCAG 57.486 50.000 0.00 0.00 0.00 4.85
2641 3150 3.449746 TGGAAACTGGGTTATTGGAGG 57.550 47.619 0.00 0.00 0.00 4.30
2717 3226 3.984838 GGCATTTGTTTGGCTCACA 57.015 47.368 0.00 0.00 39.00 3.58
2729 3238 4.130118 CTGTTTCCGAGCTATAGGCATTT 58.870 43.478 1.04 0.00 44.79 2.32
2793 3304 7.654923 GTGCTATACTGATGTCATCTCAAATCA 59.345 37.037 13.90 2.19 0.00 2.57
2794 3305 7.117523 GGTGCTATACTGATGTCATCTCAAATC 59.882 40.741 13.90 0.00 0.00 2.17
2849 3360 6.487668 TCAAGCAAGATTGAGATTCAAACTCA 59.512 34.615 0.00 0.00 38.33 3.41
2860 3371 7.639072 CGAACTTCATATTCAAGCAAGATTGAG 59.361 37.037 0.83 0.00 40.16 3.02
2885 3396 3.489785 GCTCGGTGGATTAACATAACTCG 59.510 47.826 0.00 0.00 0.00 4.18
2952 3463 4.350368 TGATGTCAAAGGCAACAGTCTA 57.650 40.909 0.00 0.00 41.41 2.59
3041 3552 6.593382 CCCATTTGTTTTCTTCTTGTTGTTCA 59.407 34.615 0.00 0.00 0.00 3.18
3045 3556 7.608308 TTTCCCATTTGTTTTCTTCTTGTTG 57.392 32.000 0.00 0.00 0.00 3.33
3082 3593 1.956477 GTGAATCTTGCCCTGTGTGTT 59.044 47.619 0.00 0.00 0.00 3.32
3092 3603 3.412386 AGTACTTGGTGGTGAATCTTGC 58.588 45.455 0.00 0.00 0.00 4.01
3222 3734 5.975988 AATATAAGCCCTCCAACTCTTCA 57.024 39.130 0.00 0.00 0.00 3.02
3293 3805 2.493675 TGTGGGATCAAGACTTCTCGAG 59.506 50.000 5.93 5.93 0.00 4.04
3487 3999 5.637127 CCTTTTGTTACCCTTCTCCCTTTA 58.363 41.667 0.00 0.00 0.00 1.85
3536 4048 4.993705 AGAACTATCACTCAAAACCCCA 57.006 40.909 0.00 0.00 0.00 4.96
3548 4060 6.610020 TCTTCGGATTTAGGGAAGAACTATCA 59.390 38.462 0.58 0.00 42.17 2.15
3580 4092 7.937394 AGGGTAAAGATTCTGGAATATAAACCG 59.063 37.037 11.76 0.00 32.31 4.44
3606 4118 1.559682 GAGGAGCATAAGTCCACCCAA 59.440 52.381 0.00 0.00 36.43 4.12
3614 4126 2.445682 AGACTCCGAGGAGCATAAGT 57.554 50.000 18.37 0.00 45.54 2.24
3620 4132 0.108089 GGGAAAAGACTCCGAGGAGC 60.108 60.000 18.37 11.36 45.54 4.70
3662 4174 4.043596 AGCTTTCCTCAATCTATCACCCT 58.956 43.478 0.00 0.00 0.00 4.34
3873 4690 2.695359 ACAAGATGGTGATAACGCGTT 58.305 42.857 29.27 29.27 0.00 4.84
4055 4896 5.013079 ACATACCATCTGAACAGGTCTGAAA 59.987 40.000 14.87 0.00 37.70 2.69
4061 4902 2.239654 CCCACATACCATCTGAACAGGT 59.760 50.000 1.93 5.37 39.41 4.00
4090 4931 0.868406 GTGAACAGCGTTCCAAGGAG 59.132 55.000 15.49 0.00 0.00 3.69
4091 4932 0.468226 AGTGAACAGCGTTCCAAGGA 59.532 50.000 15.49 0.00 0.00 3.36
4103 4944 2.097954 CACAGCAAGCAGAAAGTGAACA 59.902 45.455 0.00 0.00 0.00 3.18
4657 5782 8.871862 TGATGTTGTTAGAAATATGCAATTTGC 58.128 29.630 14.49 14.49 45.29 3.68
4879 6004 1.338337 ACAGAGTTGACACGAGGACAG 59.662 52.381 0.00 0.00 0.00 3.51
4923 6048 7.177184 GGTTGGATTAGGGGTTAGTTTTAGAA 58.823 38.462 0.00 0.00 0.00 2.10
5131 6270 7.227156 ACCTCATCATCCCATAACAAGAATAC 58.773 38.462 0.00 0.00 0.00 1.89
5148 6291 2.557555 ATCAGGACAGGACCTCATCA 57.442 50.000 0.00 0.00 38.32 3.07
5154 6297 3.964031 AGATAGTGAATCAGGACAGGACC 59.036 47.826 0.00 0.00 37.03 4.46
5158 6301 5.867903 AGGAAGATAGTGAATCAGGACAG 57.132 43.478 0.00 0.00 37.03 3.51
5198 6345 5.300539 TCTTCGTTTCATGAATTTGTTGGGA 59.699 36.000 9.40 0.00 0.00 4.37
5253 6400 3.272439 TGAGAAAAATGCAACAGCTCG 57.728 42.857 0.00 0.00 0.00 5.03
5293 6441 7.606858 ACAATTCAGATTATATCTCCATGCG 57.393 36.000 0.00 0.00 37.58 4.73
5341 6494 7.490657 TCAATACTTGGTTTAGCTTCTCCTA 57.509 36.000 0.00 0.00 0.00 2.94
5497 6650 0.390472 CTGCCGTCCCTCTTTCTGTC 60.390 60.000 0.00 0.00 0.00 3.51
5513 6666 1.672356 AGTCCATGTTCCACGCTGC 60.672 57.895 0.00 0.00 0.00 5.25
5576 6729 4.415881 TCAGTTTTACAGAAGTGGCTCA 57.584 40.909 0.00 0.00 32.15 4.26
5598 6751 9.988815 CTTAGAATATACTCAACCAGCTATGTT 57.011 33.333 0.00 0.00 0.00 2.71
5601 6754 8.958060 TCCTTAGAATATACTCAACCAGCTAT 57.042 34.615 0.00 0.00 0.00 2.97
5613 6766 9.120538 TGCATTCAAGGTTTCCTTAGAATATAC 57.879 33.333 17.11 13.13 42.67 1.47
5756 6909 5.923684 CACACCCATACATTAACAAACAACC 59.076 40.000 0.00 0.00 0.00 3.77
6112 7266 8.761575 ACACATGACACCAAATATTTCATTTC 57.238 30.769 0.00 0.00 0.00 2.17
6163 7318 3.259374 GGATCTTGTGACTCCAACTGAGA 59.741 47.826 0.00 0.00 44.42 3.27
6177 7332 7.310609 CCCAACAAAATAAAGGATGGATCTTGT 60.311 37.037 0.00 0.00 0.00 3.16
6315 7470 7.433719 TGAAACATCAAAAATAAGGAACGTGTG 59.566 33.333 0.00 0.00 0.00 3.82
6381 7536 7.167468 GTGCCTGTGAAGTAATTTGTTTTACAG 59.833 37.037 11.15 11.15 37.85 2.74
6398 7553 2.027073 GCGTCATTCGTGCCTGTGA 61.027 57.895 0.00 0.00 42.13 3.58
6529 7684 4.634004 TCATTTATGAGTGGTTAAGCACCG 59.366 41.667 29.11 11.32 39.24 4.94
6620 7776 2.695359 TGGACGCCTGTAAATTCAGTC 58.305 47.619 0.00 0.00 34.02 3.51
6724 7881 7.095229 GCTATTGTGTGAATCAGTAACAGAACA 60.095 37.037 0.00 0.00 30.95 3.18
6725 7882 7.095229 TGCTATTGTGTGAATCAGTAACAGAAC 60.095 37.037 0.00 0.00 30.95 3.01
6730 7891 5.874810 TCCTGCTATTGTGTGAATCAGTAAC 59.125 40.000 0.00 0.00 0.00 2.50
6855 8016 5.164620 TCACAGACCAACATATGATGTGT 57.835 39.130 10.38 8.13 44.07 3.72
6862 8023 3.782523 ACCTCCATCACAGACCAACATAT 59.217 43.478 0.00 0.00 0.00 1.78
6863 8024 3.181329 ACCTCCATCACAGACCAACATA 58.819 45.455 0.00 0.00 0.00 2.29
6903 8064 8.081025 GGGAAGAGGTTTATCAGTTATACTACG 58.919 40.741 0.00 0.00 0.00 3.51
6992 8153 2.098607 CCTACGGATCAGTTAGCAACGA 59.901 50.000 3.18 0.00 36.23 3.85
7020 8185 3.141272 AGAGGAATACCAGTAGCTAGGCT 59.859 47.826 0.00 0.00 39.72 4.58
7144 8309 0.534203 GAGAACCGAGGTGCCAAACA 60.534 55.000 0.00 0.00 0.00 2.83
7215 8380 4.633565 CAGCTAAACTAGAAAGCTTCCCAG 59.366 45.833 13.19 0.00 43.97 4.45
7223 8388 4.574013 CCATCTGGCAGCTAAACTAGAAAG 59.426 45.833 10.34 0.00 0.00 2.62
7234 8399 1.005097 TCACAAATCCATCTGGCAGCT 59.995 47.619 10.34 0.00 34.44 4.24
7310 8475 2.747686 GGAGCTCGGTTTCCACCA 59.252 61.111 7.83 0.00 44.53 4.17
7324 8489 1.350193 CGTCATGACCAAAGTCGGAG 58.650 55.000 20.03 0.00 46.74 4.63
7341 8506 4.922026 GACACCGCCAACACCCGT 62.922 66.667 0.00 0.00 0.00 5.28
7346 8511 2.356553 GCGTAGACACCGCCAACA 60.357 61.111 0.00 0.00 45.20 3.33
7367 8532 6.655078 AAGCAATGTCTTCAACAAGGTAAT 57.345 33.333 0.00 0.00 42.37 1.89
7370 8535 5.111293 CAAAAGCAATGTCTTCAACAAGGT 58.889 37.500 0.00 0.00 42.37 3.50
7371 8536 4.025480 GCAAAAGCAATGTCTTCAACAAGG 60.025 41.667 0.00 0.00 42.37 3.61
7372 8537 4.317558 CGCAAAAGCAATGTCTTCAACAAG 60.318 41.667 0.00 0.00 42.37 3.16
7373 8538 3.551082 CGCAAAAGCAATGTCTTCAACAA 59.449 39.130 0.00 0.00 42.37 2.83
7374 8539 3.114809 CGCAAAAGCAATGTCTTCAACA 58.885 40.909 0.00 0.00 43.51 3.33
7375 8540 2.472488 CCGCAAAAGCAATGTCTTCAAC 59.528 45.455 0.00 0.00 0.00 3.18
7376 8541 2.100584 ACCGCAAAAGCAATGTCTTCAA 59.899 40.909 0.00 0.00 0.00 2.69
7377 8542 1.680735 ACCGCAAAAGCAATGTCTTCA 59.319 42.857 0.00 0.00 0.00 3.02
7378 8543 2.287547 TGACCGCAAAAGCAATGTCTTC 60.288 45.455 0.00 0.00 0.00 2.87
7379 8544 1.680735 TGACCGCAAAAGCAATGTCTT 59.319 42.857 0.00 0.00 0.00 3.01
7380 8545 1.317613 TGACCGCAAAAGCAATGTCT 58.682 45.000 0.00 0.00 0.00 3.41
7381 8546 2.352503 ATGACCGCAAAAGCAATGTC 57.647 45.000 0.00 0.00 0.00 3.06
7386 8563 2.288152 GGAGAAAATGACCGCAAAAGCA 60.288 45.455 0.00 0.00 0.00 3.91
7408 8585 1.464997 CCCTCAAAACAGTCTAAGCGC 59.535 52.381 0.00 0.00 0.00 5.92
7461 8670 3.117246 AGGATACCCAGATCAAGGTCGTA 60.117 47.826 9.76 3.56 37.59 3.43
7462 8671 2.040178 GGATACCCAGATCAAGGTCGT 58.960 52.381 9.76 1.64 37.59 4.34
7463 8672 2.320781 AGGATACCCAGATCAAGGTCG 58.679 52.381 9.76 0.00 37.59 4.79
7464 8673 4.742012 TCTAGGATACCCAGATCAAGGTC 58.258 47.826 9.76 0.00 37.59 3.85
7465 8674 4.834406 TCTAGGATACCCAGATCAAGGT 57.166 45.455 11.08 11.08 40.31 3.50
7466 8675 5.336945 TGATCTAGGATACCCAGATCAAGG 58.663 45.833 20.32 0.00 44.52 3.61
7467 8676 6.152661 GTCTGATCTAGGATACCCAGATCAAG 59.847 46.154 21.87 17.22 45.46 3.02
7468 8677 6.013379 GTCTGATCTAGGATACCCAGATCAA 58.987 44.000 21.87 13.94 45.46 2.57
7469 8678 5.517477 GGTCTGATCTAGGATACCCAGATCA 60.517 48.000 20.91 20.91 44.85 2.92
7470 8679 4.953579 GGTCTGATCTAGGATACCCAGATC 59.046 50.000 15.56 15.56 41.84 2.75
7471 8680 4.358310 TGGTCTGATCTAGGATACCCAGAT 59.642 45.833 0.00 0.00 34.91 2.90
7472 8681 3.727391 TGGTCTGATCTAGGATACCCAGA 59.273 47.826 0.00 0.00 33.88 3.86
7473 8682 3.829601 GTGGTCTGATCTAGGATACCCAG 59.170 52.174 0.00 0.00 33.88 4.45
7474 8683 3.750922 CGTGGTCTGATCTAGGATACCCA 60.751 52.174 0.00 0.00 33.88 4.51
7475 8684 2.820787 CGTGGTCTGATCTAGGATACCC 59.179 54.545 0.00 0.00 37.17 3.69
7476 8685 3.752665 TCGTGGTCTGATCTAGGATACC 58.247 50.000 0.00 0.00 37.17 2.73
7477 8686 4.216687 CCTTCGTGGTCTGATCTAGGATAC 59.783 50.000 0.00 0.00 0.00 2.24
7478 8687 4.399219 CCTTCGTGGTCTGATCTAGGATA 58.601 47.826 0.00 0.00 0.00 2.59
7479 8688 3.226777 CCTTCGTGGTCTGATCTAGGAT 58.773 50.000 0.00 0.00 0.00 3.24
7480 8689 2.656002 CCTTCGTGGTCTGATCTAGGA 58.344 52.381 0.00 0.00 0.00 2.94
7481 8690 1.067821 GCCTTCGTGGTCTGATCTAGG 59.932 57.143 0.00 0.00 38.35 3.02
7482 8691 1.268794 CGCCTTCGTGGTCTGATCTAG 60.269 57.143 0.00 0.00 38.35 2.43
7483 8692 0.738975 CGCCTTCGTGGTCTGATCTA 59.261 55.000 0.00 0.00 38.35 1.98
7484 8693 1.513158 CGCCTTCGTGGTCTGATCT 59.487 57.895 0.00 0.00 38.35 2.75
7485 8694 2.167861 GCGCCTTCGTGGTCTGATC 61.168 63.158 0.00 0.00 38.35 2.92
7486 8695 1.320344 TAGCGCCTTCGTGGTCTGAT 61.320 55.000 2.29 0.00 38.35 2.90
7487 8696 1.320344 ATAGCGCCTTCGTGGTCTGA 61.320 55.000 2.29 0.00 38.35 3.27
7488 8697 0.872021 GATAGCGCCTTCGTGGTCTG 60.872 60.000 2.29 0.00 38.35 3.51
7489 8698 1.437986 GATAGCGCCTTCGTGGTCT 59.562 57.895 2.29 0.00 38.35 3.85
7490 8699 1.944676 CGATAGCGCCTTCGTGGTC 60.945 63.158 18.38 0.00 38.35 4.02
7491 8700 2.104331 CGATAGCGCCTTCGTGGT 59.896 61.111 18.38 0.00 38.35 4.16
7492 8701 2.658593 CCGATAGCGCCTTCGTGG 60.659 66.667 22.89 9.33 38.14 4.94
7493 8702 2.104331 ACCGATAGCGCCTTCGTG 59.896 61.111 22.89 17.54 38.14 4.35
7498 8707 1.464376 ATACAGCACCGATAGCGCCT 61.464 55.000 2.29 0.00 37.01 5.52
7501 8710 1.000163 AGGAATACAGCACCGATAGCG 60.000 52.381 0.00 0.00 37.01 4.26
7527 8778 0.250727 AGGACCCACCAACATTGACG 60.251 55.000 0.00 0.00 42.04 4.35
7592 8909 3.872603 ACAACCGCCCTGCACTCA 61.873 61.111 0.00 0.00 0.00 3.41
7596 8915 3.215568 CAACACAACCGCCCTGCA 61.216 61.111 0.00 0.00 0.00 4.41
7644 8963 9.831737 CTTCAAAGAAGGTATTAACACAATCTG 57.168 33.333 0.00 0.00 0.00 2.90
7645 8964 9.793259 TCTTCAAAGAAGGTATTAACACAATCT 57.207 29.630 6.89 0.00 30.73 2.40
7648 8967 8.792633 CCATCTTCAAAGAAGGTATTAACACAA 58.207 33.333 6.89 0.00 38.69 3.33
7649 8968 8.160765 TCCATCTTCAAAGAAGGTATTAACACA 58.839 33.333 12.39 0.00 42.84 3.72
7650 8969 8.561738 TCCATCTTCAAAGAAGGTATTAACAC 57.438 34.615 12.39 0.00 42.84 3.32
7651 8970 9.753674 AATCCATCTTCAAAGAAGGTATTAACA 57.246 29.630 12.39 0.00 42.84 2.41
7654 8973 9.396022 GACAATCCATCTTCAAAGAAGGTATTA 57.604 33.333 12.39 0.00 42.84 0.98
7692 9011 1.884444 GACTGACTCCGAGTGGTCC 59.116 63.158 5.57 0.00 36.30 4.46
7700 9019 0.812811 TATCGGTCCGACTGACTCCG 60.813 60.000 18.08 0.00 43.89 4.63
7701 9020 1.267261 CATATCGGTCCGACTGACTCC 59.733 57.143 18.08 0.00 43.89 3.85
7734 9053 3.915437 CTTCAACCAAGCCGTAATGTT 57.085 42.857 0.00 0.00 0.00 2.71
7759 9079 4.512571 CAGCAAAGCCAAACATTTAAAGCT 59.487 37.500 0.00 0.00 0.00 3.74
7772 9092 0.746063 CAAACCTCACAGCAAAGCCA 59.254 50.000 0.00 0.00 0.00 4.75
7782 9102 1.208776 AGCCGTATACCCAAACCTCAC 59.791 52.381 0.00 0.00 0.00 3.51
7784 9104 1.483415 TGAGCCGTATACCCAAACCTC 59.517 52.381 0.00 0.00 0.00 3.85
7923 9253 1.678635 CCCGGCTTCTGCATTTGGA 60.679 57.895 0.00 0.00 41.91 3.53
7925 9255 1.535204 AACCCCGGCTTCTGCATTTG 61.535 55.000 0.00 0.00 41.91 2.32
7926 9256 1.228862 AACCCCGGCTTCTGCATTT 60.229 52.632 0.00 0.00 41.91 2.32
7927 9257 1.678970 GAACCCCGGCTTCTGCATT 60.679 57.895 0.00 0.00 41.91 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.