Multiple sequence alignment - TraesCS7B01G182000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G182000 chr7B 100.000 3568 0 0 353 3920 281387713 281384146 0.000000e+00 6589
1 TraesCS7B01G182000 chr7B 100.000 161 0 0 1 161 281388065 281387905 8.230000e-77 298
2 TraesCS7B01G182000 chr7B 88.535 157 15 3 3666 3820 417392718 417392563 1.860000e-43 187
3 TraesCS7B01G182000 chr7A 97.171 3075 49 17 353 3396 352859656 352862723 0.000000e+00 5162
4 TraesCS7B01G182000 chr7A 95.402 174 8 0 3395 3568 302803661 302803488 1.070000e-70 278
5 TraesCS7B01G182000 chr7A 99.099 111 1 0 3561 3671 352862725 352862835 2.390000e-47 200
6 TraesCS7B01G182000 chr7A 96.610 118 4 0 3794 3911 352862833 352862950 3.090000e-46 196
7 TraesCS7B01G182000 chr7D 98.150 2594 26 8 820 3396 342633091 342630503 0.000000e+00 4505
8 TraesCS7B01G182000 chr7D 94.008 484 20 5 353 828 342634011 342633529 0.000000e+00 725
9 TraesCS7B01G182000 chr7D 99.099 111 1 0 3561 3671 342630501 342630391 2.390000e-47 200
10 TraesCS7B01G182000 chr7D 96.610 118 4 0 3794 3911 342630393 342630276 3.090000e-46 196
11 TraesCS7B01G182000 chr5A 80.466 1674 304 21 1254 2920 428408646 428410303 0.000000e+00 1258
12 TraesCS7B01G182000 chr5A 95.349 172 8 0 3392 3563 367790246 367790075 1.390000e-69 274
13 TraesCS7B01G182000 chr5D 79.988 1679 306 25 1254 2920 327992030 327990370 0.000000e+00 1212
14 TraesCS7B01G182000 chr5D 93.407 182 10 2 3381 3562 90002494 90002673 6.460000e-68 268
15 TraesCS7B01G182000 chr5B 79.952 1676 309 18 1254 2920 381357892 381356235 0.000000e+00 1208
16 TraesCS7B01G182000 chr5B 88.535 157 15 3 3666 3820 288587764 288587609 1.860000e-43 187
17 TraesCS7B01G182000 chr1D 98.824 170 2 0 3397 3566 293904765 293904596 1.770000e-78 303
18 TraesCS7B01G182000 chr1A 97.647 170 3 1 3397 3566 366266286 366266118 1.380000e-74 291
19 TraesCS7B01G182000 chr1A 87.805 164 15 5 3659 3820 535143324 535143484 1.860000e-43 187
20 TraesCS7B01G182000 chr2D 98.182 165 3 0 3397 3561 78766006 78766170 4.960000e-74 289
21 TraesCS7B01G182000 chr6B 97.590 166 4 0 3397 3562 151137077 151136912 6.410000e-73 285
22 TraesCS7B01G182000 chr6B 89.404 151 13 3 3666 3813 118513747 118513597 1.860000e-43 187
23 TraesCS7B01G182000 chr6D 93.443 183 10 2 3396 3578 153869404 153869224 1.800000e-68 270
24 TraesCS7B01G182000 chr3D 91.414 198 14 3 3379 3575 401307135 401307330 6.460000e-68 268
25 TraesCS7B01G182000 chr3D 87.805 164 15 5 3659 3820 238057882 238058042 1.860000e-43 187
26 TraesCS7B01G182000 chr4B 88.415 164 14 5 3659 3820 254462658 254462818 4.000000e-45 193
27 TraesCS7B01G182000 chr4B 87.195 164 18 3 3659 3820 186271271 186271433 2.410000e-42 183
28 TraesCS7B01G182000 chr4A 87.805 164 15 5 3659 3820 14654522 14654682 1.860000e-43 187
29 TraesCS7B01G182000 chr1B 88.535 157 15 3 3666 3820 541561587 541561432 1.860000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G182000 chr7B 281384146 281388065 3919 True 3443.500000 6589 100.000000 1 3920 2 chr7B.!!$R2 3919
1 TraesCS7B01G182000 chr7A 352859656 352862950 3294 False 1852.666667 5162 97.626667 353 3911 3 chr7A.!!$F1 3558
2 TraesCS7B01G182000 chr7D 342630276 342634011 3735 True 1406.500000 4505 96.966750 353 3911 4 chr7D.!!$R1 3558
3 TraesCS7B01G182000 chr5A 428408646 428410303 1657 False 1258.000000 1258 80.466000 1254 2920 1 chr5A.!!$F1 1666
4 TraesCS7B01G182000 chr5D 327990370 327992030 1660 True 1212.000000 1212 79.988000 1254 2920 1 chr5D.!!$R1 1666
5 TraesCS7B01G182000 chr5B 381356235 381357892 1657 True 1208.000000 1208 79.952000 1254 2920 1 chr5B.!!$R2 1666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 599 0.033796 ATTCGACACCCCTCCGTCTA 60.034 55.000 0.0 0.0 0.0 2.59 F
608 615 2.007608 GTCTATTTGAGGGGCGTTGTC 58.992 52.381 0.0 0.0 0.0 3.18 F
980 1446 2.037527 GGTGGAGAGTCGGGAGGT 59.962 66.667 0.0 0.0 0.0 3.85 F
1069 1535 2.049433 ACTCGTCGTTGGCTTCGG 60.049 61.111 0.0 0.0 0.0 4.30 F
2543 3024 1.102978 GCCACAAATTACCAGCGGAT 58.897 50.000 1.5 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2061 2542 0.527817 CCGAGAGTATTCCACGCACC 60.528 60.000 0.00 0.0 0.00 5.01 R
2329 2810 4.521146 AGGACAACAATGATCCAGATGAC 58.479 43.478 5.93 0.0 34.73 3.06 R
2543 3024 4.842531 TTCAGGATCTTTAGCCATGACA 57.157 40.909 0.00 0.0 31.71 3.58 R
2904 3385 6.546403 CACAGGAATTTCATCCATGAGATCTT 59.454 38.462 0.00 0.0 42.27 2.40 R
3497 3983 1.754803 CAAGGGACTACATACGGAGCA 59.245 52.381 0.00 0.0 38.49 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.053618 TGGATTTTGGGCGTTTGGG 58.946 52.632 0.00 0.00 0.00 4.12
19 20 1.295101 GGATTTTGGGCGTTTGGGG 59.705 57.895 0.00 0.00 0.00 4.96
20 21 1.295101 GATTTTGGGCGTTTGGGGG 59.705 57.895 0.00 0.00 0.00 5.40
39 40 2.126071 CGAAGGACGCCGATGTGT 60.126 61.111 0.00 0.00 38.09 3.72
40 41 2.444624 CGAAGGACGCCGATGTGTG 61.445 63.158 0.00 0.00 34.74 3.82
41 42 2.047274 AAGGACGCCGATGTGTGG 60.047 61.111 0.00 0.00 34.74 4.17
59 60 2.671619 CCGCGGTGGTGGTTTGAT 60.672 61.111 19.50 0.00 39.07 2.57
60 61 2.686816 CCGCGGTGGTGGTTTGATC 61.687 63.158 19.50 0.00 39.07 2.92
61 62 2.867472 GCGGTGGTGGTTTGATCG 59.133 61.111 0.00 0.00 0.00 3.69
62 63 1.669760 GCGGTGGTGGTTTGATCGA 60.670 57.895 0.00 0.00 0.00 3.59
63 64 1.635663 GCGGTGGTGGTTTGATCGAG 61.636 60.000 0.00 0.00 0.00 4.04
64 65 0.320421 CGGTGGTGGTTTGATCGAGT 60.320 55.000 0.00 0.00 0.00 4.18
65 66 1.876416 CGGTGGTGGTTTGATCGAGTT 60.876 52.381 0.00 0.00 0.00 3.01
66 67 2.610976 CGGTGGTGGTTTGATCGAGTTA 60.611 50.000 0.00 0.00 0.00 2.24
67 68 3.000727 GGTGGTGGTTTGATCGAGTTAG 58.999 50.000 0.00 0.00 0.00 2.34
68 69 3.000727 GTGGTGGTTTGATCGAGTTAGG 58.999 50.000 0.00 0.00 0.00 2.69
69 70 2.635915 TGGTGGTTTGATCGAGTTAGGT 59.364 45.455 0.00 0.00 0.00 3.08
70 71 3.000727 GGTGGTTTGATCGAGTTAGGTG 58.999 50.000 0.00 0.00 0.00 4.00
71 72 3.000727 GTGGTTTGATCGAGTTAGGTGG 58.999 50.000 0.00 0.00 0.00 4.61
72 73 2.635915 TGGTTTGATCGAGTTAGGTGGT 59.364 45.455 0.00 0.00 0.00 4.16
73 74 3.071892 TGGTTTGATCGAGTTAGGTGGTT 59.928 43.478 0.00 0.00 0.00 3.67
74 75 3.435671 GGTTTGATCGAGTTAGGTGGTTG 59.564 47.826 0.00 0.00 0.00 3.77
75 76 3.328382 TTGATCGAGTTAGGTGGTTGG 57.672 47.619 0.00 0.00 0.00 3.77
76 77 1.066430 TGATCGAGTTAGGTGGTTGGC 60.066 52.381 0.00 0.00 0.00 4.52
77 78 0.108329 ATCGAGTTAGGTGGTTGGCG 60.108 55.000 0.00 0.00 0.00 5.69
78 79 1.740296 CGAGTTAGGTGGTTGGCGG 60.740 63.158 0.00 0.00 0.00 6.13
79 80 1.373812 GAGTTAGGTGGTTGGCGGT 59.626 57.895 0.00 0.00 0.00 5.68
80 81 0.953960 GAGTTAGGTGGTTGGCGGTG 60.954 60.000 0.00 0.00 0.00 4.94
81 82 2.281900 TTAGGTGGTTGGCGGTGC 60.282 61.111 0.00 0.00 0.00 5.01
82 83 3.121406 TTAGGTGGTTGGCGGTGCA 62.121 57.895 0.00 0.00 0.00 4.57
83 84 3.545124 TAGGTGGTTGGCGGTGCAG 62.545 63.158 0.00 0.00 0.00 4.41
85 86 3.964875 GTGGTTGGCGGTGCAGTG 61.965 66.667 0.00 0.00 0.00 3.66
94 95 4.947147 GGTGCAGTGCCGGGTGAA 62.947 66.667 13.72 0.00 0.00 3.18
95 96 3.660111 GTGCAGTGCCGGGTGAAC 61.660 66.667 13.72 0.00 0.00 3.18
96 97 4.182433 TGCAGTGCCGGGTGAACA 62.182 61.111 13.72 0.00 0.00 3.18
97 98 3.660111 GCAGTGCCGGGTGAACAC 61.660 66.667 2.85 1.63 34.48 3.32
107 108 2.562912 GTGAACACCATGCTGCCG 59.437 61.111 0.00 0.00 0.00 5.69
108 109 2.672651 TGAACACCATGCTGCCGG 60.673 61.111 0.00 0.00 0.00 6.13
109 110 2.672996 GAACACCATGCTGCCGGT 60.673 61.111 1.90 5.11 35.27 5.28
110 111 2.672996 AACACCATGCTGCCGGTC 60.673 61.111 1.90 0.00 31.41 4.79
111 112 3.490031 AACACCATGCTGCCGGTCA 62.490 57.895 1.90 0.00 31.41 4.02
112 113 2.438975 CACCATGCTGCCGGTCAT 60.439 61.111 1.90 1.37 31.41 3.06
113 114 2.438975 ACCATGCTGCCGGTCATG 60.439 61.111 19.68 19.68 39.67 3.07
115 116 3.214123 CATGCTGCCGGTCATGGG 61.214 66.667 19.17 3.44 37.13 4.00
116 117 3.731728 ATGCTGCCGGTCATGGGT 61.732 61.111 1.90 0.00 0.00 4.51
117 118 3.704231 ATGCTGCCGGTCATGGGTC 62.704 63.158 1.90 0.00 0.00 4.46
119 120 4.838152 CTGCCGGTCATGGGTCGG 62.838 72.222 1.90 14.78 45.84 4.79
123 124 2.760799 CGGTCATGGGTCGGGGTA 60.761 66.667 0.00 0.00 0.00 3.69
124 125 2.792947 CGGTCATGGGTCGGGGTAG 61.793 68.421 0.00 0.00 0.00 3.18
125 126 2.440817 GGTCATGGGTCGGGGTAGG 61.441 68.421 0.00 0.00 0.00 3.18
126 127 2.766651 TCATGGGTCGGGGTAGGC 60.767 66.667 0.00 0.00 0.00 3.93
127 128 3.087253 CATGGGTCGGGGTAGGCA 61.087 66.667 0.00 0.00 0.00 4.75
128 129 2.285818 ATGGGTCGGGGTAGGCAA 60.286 61.111 0.00 0.00 0.00 4.52
129 130 1.696314 ATGGGTCGGGGTAGGCAAT 60.696 57.895 0.00 0.00 0.00 3.56
130 131 1.994885 ATGGGTCGGGGTAGGCAATG 61.995 60.000 0.00 0.00 0.00 2.82
131 132 2.192175 GGTCGGGGTAGGCAATGG 59.808 66.667 0.00 0.00 0.00 3.16
132 133 2.676265 GGTCGGGGTAGGCAATGGT 61.676 63.158 0.00 0.00 0.00 3.55
133 134 1.451387 GTCGGGGTAGGCAATGGTG 60.451 63.158 0.00 0.00 0.00 4.17
134 135 1.613928 TCGGGGTAGGCAATGGTGA 60.614 57.895 0.00 0.00 0.00 4.02
135 136 1.451387 CGGGGTAGGCAATGGTGAC 60.451 63.158 0.00 0.00 0.00 3.67
136 137 1.451387 GGGGTAGGCAATGGTGACG 60.451 63.158 0.00 0.00 38.10 4.35
137 138 1.298667 GGGTAGGCAATGGTGACGT 59.701 57.895 0.00 0.00 38.10 4.34
138 139 0.743345 GGGTAGGCAATGGTGACGTC 60.743 60.000 9.11 9.11 38.10 4.34
139 140 0.249398 GGTAGGCAATGGTGACGTCT 59.751 55.000 17.92 0.00 38.10 4.18
140 141 1.359848 GTAGGCAATGGTGACGTCTG 58.640 55.000 17.92 7.26 38.10 3.51
141 142 0.973632 TAGGCAATGGTGACGTCTGT 59.026 50.000 17.92 0.00 38.10 3.41
142 143 0.603707 AGGCAATGGTGACGTCTGTG 60.604 55.000 17.92 8.39 38.10 3.66
143 144 1.577328 GGCAATGGTGACGTCTGTGG 61.577 60.000 17.92 2.84 0.00 4.17
144 145 1.577328 GCAATGGTGACGTCTGTGGG 61.577 60.000 17.92 3.40 0.00 4.61
145 146 1.302511 AATGGTGACGTCTGTGGGC 60.303 57.895 17.92 0.20 0.00 5.36
146 147 3.589654 ATGGTGACGTCTGTGGGCG 62.590 63.158 17.92 0.00 0.00 6.13
157 158 4.179579 GTGGGCGCCGCTTCATTC 62.180 66.667 22.54 3.93 0.00 2.67
158 159 4.408821 TGGGCGCCGCTTCATTCT 62.409 61.111 22.54 0.00 0.00 2.40
159 160 3.577313 GGGCGCCGCTTCATTCTC 61.577 66.667 22.54 0.00 0.00 2.87
160 161 3.929948 GGCGCCGCTTCATTCTCG 61.930 66.667 12.58 0.00 0.00 4.04
395 396 0.706433 ATCACACCTCTTGGGGCATT 59.294 50.000 0.00 0.00 41.53 3.56
419 420 0.323629 CTGGAGTTTCTTACCGGCCA 59.676 55.000 0.00 0.00 0.00 5.36
472 473 1.288127 GCTGCTTGGAGCTTGGTTG 59.712 57.895 6.87 0.00 42.97 3.77
588 595 0.754217 TCCTATTCGACACCCCTCCG 60.754 60.000 0.00 0.00 0.00 4.63
592 599 0.033796 ATTCGACACCCCTCCGTCTA 60.034 55.000 0.00 0.00 0.00 2.59
608 615 2.007608 GTCTATTTGAGGGGCGTTGTC 58.992 52.381 0.00 0.00 0.00 3.18
630 637 2.774687 GGTGACAACCATACGAAAGGT 58.225 47.619 0.00 0.00 46.75 3.50
767 782 7.546667 ACACCATCTAAATGAATGAAATGCAAC 59.453 33.333 0.00 0.00 33.83 4.17
980 1446 2.037527 GGTGGAGAGTCGGGAGGT 59.962 66.667 0.00 0.00 0.00 3.85
1069 1535 2.049433 ACTCGTCGTTGGCTTCGG 60.049 61.111 0.00 0.00 0.00 4.30
1129 1607 2.722201 GCAGGGGATCGAACCGAGT 61.722 63.158 5.55 0.00 39.91 4.18
2329 2810 4.124351 CACCGCTTGCTGCCCATG 62.124 66.667 0.00 0.00 38.78 3.66
2543 3024 1.102978 GCCACAAATTACCAGCGGAT 58.897 50.000 1.50 0.00 0.00 4.18
2891 3372 3.296737 AGGGGCTCCTCCTTCCCT 61.297 66.667 0.00 0.00 44.43 4.20
2904 3385 4.213531 TCCTTCCCTGCATAATAGGAGA 57.786 45.455 4.24 0.00 37.52 3.71
3008 3489 0.536006 AAGTGCTGACAGTTGGAGCC 60.536 55.000 3.99 0.00 38.05 4.70
3303 3784 1.134640 TCATGCCAATGCCTTGAATGC 60.135 47.619 2.97 0.00 36.33 3.56
3359 3844 4.299586 TGGATAGTCCATGCTTTGTTGA 57.700 40.909 0.00 0.00 42.67 3.18
3374 3859 9.678260 ATGCTTTGTTGATTAGAGATAGAAAGT 57.322 29.630 0.00 0.00 0.00 2.66
3405 3891 6.847421 TTACTCTTTTGTACTACTCCCTCC 57.153 41.667 0.00 0.00 0.00 4.30
3406 3892 3.762823 ACTCTTTTGTACTACTCCCTCCG 59.237 47.826 0.00 0.00 0.00 4.63
3407 3893 3.762823 CTCTTTTGTACTACTCCCTCCGT 59.237 47.826 0.00 0.00 0.00 4.69
3408 3894 4.154942 TCTTTTGTACTACTCCCTCCGTT 58.845 43.478 0.00 0.00 0.00 4.44
3409 3895 4.219288 TCTTTTGTACTACTCCCTCCGTTC 59.781 45.833 0.00 0.00 0.00 3.95
3410 3896 2.134789 TGTACTACTCCCTCCGTTCC 57.865 55.000 0.00 0.00 0.00 3.62
3411 3897 1.637553 TGTACTACTCCCTCCGTTCCT 59.362 52.381 0.00 0.00 0.00 3.36
3412 3898 2.846206 TGTACTACTCCCTCCGTTCCTA 59.154 50.000 0.00 0.00 0.00 2.94
3413 3899 3.266772 TGTACTACTCCCTCCGTTCCTAA 59.733 47.826 0.00 0.00 0.00 2.69
3414 3900 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3415 3901 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3416 3902 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3417 3903 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3418 3904 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
3419 3905 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
3420 3906 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3421 3907 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3422 3908 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3423 3909 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3424 3910 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3425 3911 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3426 3912 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3427 3913 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3445 3931 9.579932 AGTCTTTTTAGAGATTTCAAATGGACT 57.420 29.630 0.00 0.00 0.00 3.85
3451 3937 9.567776 TTTAGAGATTTCAAATGGACTACAACA 57.432 29.630 0.00 0.00 0.00 3.33
3452 3938 9.739276 TTAGAGATTTCAAATGGACTACAACAT 57.261 29.630 0.00 0.00 0.00 2.71
3454 3940 9.167311 AGAGATTTCAAATGGACTACAACATAC 57.833 33.333 0.00 0.00 0.00 2.39
3455 3941 7.974675 AGATTTCAAATGGACTACAACATACG 58.025 34.615 0.00 0.00 0.00 3.06
3456 3942 6.489127 TTTCAAATGGACTACAACATACGG 57.511 37.500 0.00 0.00 0.00 4.02
3457 3943 5.408880 TCAAATGGACTACAACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
3458 3944 5.984725 TCAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
3459 3945 5.815222 TCAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
3461 3947 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
3462 3948 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
3463 3949 7.770366 ATGGACTACAACATACGGATGTATA 57.230 36.000 15.10 8.98 45.93 1.47
3464 3950 7.770366 TGGACTACAACATACGGATGTATAT 57.230 36.000 15.10 5.13 45.93 0.86
3465 3951 8.866970 TGGACTACAACATACGGATGTATATA 57.133 34.615 15.10 6.07 45.93 0.86
3466 3952 8.953313 TGGACTACAACATACGGATGTATATAG 58.047 37.037 15.10 16.95 45.93 1.31
3467 3953 9.170734 GGACTACAACATACGGATGTATATAGA 57.829 37.037 23.06 5.58 45.93 1.98
3468 3954 9.985318 GACTACAACATACGGATGTATATAGAC 57.015 37.037 23.06 16.72 45.93 2.59
3469 3955 9.511272 ACTACAACATACGGATGTATATAGACA 57.489 33.333 23.06 2.07 45.93 3.41
3501 3987 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3502 3988 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3503 3989 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3504 3990 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3505 3991 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3506 3992 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3507 3993 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3508 3994 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3509 3995 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3510 3996 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3511 3997 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3512 3998 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3513 3999 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
3514 4000 2.973694 TTTGCTCCGTATGTAGTCCC 57.026 50.000 0.00 0.00 0.00 4.46
3515 4001 2.154567 TTGCTCCGTATGTAGTCCCT 57.845 50.000 0.00 0.00 0.00 4.20
3516 4002 2.154567 TGCTCCGTATGTAGTCCCTT 57.845 50.000 0.00 0.00 0.00 3.95
3517 4003 1.754803 TGCTCCGTATGTAGTCCCTTG 59.245 52.381 0.00 0.00 0.00 3.61
3518 4004 1.755380 GCTCCGTATGTAGTCCCTTGT 59.245 52.381 0.00 0.00 0.00 3.16
3519 4005 2.167900 GCTCCGTATGTAGTCCCTTGTT 59.832 50.000 0.00 0.00 0.00 2.83
3520 4006 3.782046 CTCCGTATGTAGTCCCTTGTTG 58.218 50.000 0.00 0.00 0.00 3.33
3521 4007 2.498481 TCCGTATGTAGTCCCTTGTTGG 59.502 50.000 0.00 0.00 0.00 3.77
3522 4008 2.498481 CCGTATGTAGTCCCTTGTTGGA 59.502 50.000 0.00 0.00 38.35 3.53
3523 4009 3.055675 CCGTATGTAGTCCCTTGTTGGAA 60.056 47.826 0.00 0.00 35.80 3.53
3524 4010 4.383770 CCGTATGTAGTCCCTTGTTGGAAT 60.384 45.833 0.00 0.00 35.80 3.01
3525 4011 4.809426 CGTATGTAGTCCCTTGTTGGAATC 59.191 45.833 0.00 0.00 35.80 2.52
3526 4012 5.395324 CGTATGTAGTCCCTTGTTGGAATCT 60.395 44.000 0.00 0.00 35.80 2.40
3527 4013 4.553330 TGTAGTCCCTTGTTGGAATCTC 57.447 45.455 0.00 0.00 35.80 2.75
3528 4014 4.168101 TGTAGTCCCTTGTTGGAATCTCT 58.832 43.478 0.00 0.00 35.80 3.10
3529 4015 5.338632 TGTAGTCCCTTGTTGGAATCTCTA 58.661 41.667 0.00 0.00 35.80 2.43
3530 4016 5.783360 TGTAGTCCCTTGTTGGAATCTCTAA 59.217 40.000 0.00 0.00 35.80 2.10
3531 4017 5.843019 AGTCCCTTGTTGGAATCTCTAAA 57.157 39.130 0.00 0.00 35.80 1.85
3532 4018 6.200878 AGTCCCTTGTTGGAATCTCTAAAA 57.799 37.500 0.00 0.00 35.80 1.52
3533 4019 6.610830 AGTCCCTTGTTGGAATCTCTAAAAA 58.389 36.000 0.00 0.00 35.80 1.94
3534 4020 6.717084 AGTCCCTTGTTGGAATCTCTAAAAAG 59.283 38.462 0.00 0.00 33.49 2.27
3535 4021 6.715264 GTCCCTTGTTGGAATCTCTAAAAAGA 59.285 38.462 4.69 0.00 35.06 2.52
3536 4022 6.715264 TCCCTTGTTGGAATCTCTAAAAAGAC 59.285 38.462 4.69 0.00 35.06 3.01
3537 4023 6.717084 CCCTTGTTGGAATCTCTAAAAAGACT 59.283 38.462 4.69 0.00 35.06 3.24
3538 4024 7.231519 CCCTTGTTGGAATCTCTAAAAAGACTT 59.768 37.037 4.69 0.00 35.06 3.01
3539 4025 9.284968 CCTTGTTGGAATCTCTAAAAAGACTTA 57.715 33.333 4.69 0.00 35.06 2.24
3541 4027 9.621629 TTGTTGGAATCTCTAAAAAGACTTACA 57.378 29.630 0.00 0.00 0.00 2.41
3542 4028 9.793259 TGTTGGAATCTCTAAAAAGACTTACAT 57.207 29.630 0.00 0.00 0.00 2.29
3546 4032 9.974750 GGAATCTCTAAAAAGACTTACATTTCG 57.025 33.333 0.00 0.00 0.00 3.46
3547 4033 9.974750 GAATCTCTAAAAAGACTTACATTTCGG 57.025 33.333 0.00 0.00 0.00 4.30
3548 4034 9.720769 AATCTCTAAAAAGACTTACATTTCGGA 57.279 29.630 0.00 0.00 0.00 4.55
3549 4035 9.720769 ATCTCTAAAAAGACTTACATTTCGGAA 57.279 29.630 0.00 0.00 0.00 4.30
3550 4036 8.985805 TCTCTAAAAAGACTTACATTTCGGAAC 58.014 33.333 0.00 0.00 0.00 3.62
3551 4037 8.665643 TCTAAAAAGACTTACATTTCGGAACA 57.334 30.769 0.00 0.00 0.00 3.18
3552 4038 8.770828 TCTAAAAAGACTTACATTTCGGAACAG 58.229 33.333 0.00 0.00 0.00 3.16
3553 4039 7.562454 AAAAAGACTTACATTTCGGAACAGA 57.438 32.000 0.00 0.00 0.00 3.41
3554 4040 6.787085 AAAGACTTACATTTCGGAACAGAG 57.213 37.500 0.00 0.00 0.00 3.35
3555 4041 4.822026 AGACTTACATTTCGGAACAGAGG 58.178 43.478 0.00 0.00 0.00 3.69
3556 4042 3.933332 GACTTACATTTCGGAACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
3557 4043 3.581332 ACTTACATTTCGGAACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
3558 4044 2.770164 ACATTTCGGAACAGAGGGAG 57.230 50.000 0.00 0.00 0.00 4.30
3559 4045 1.978580 ACATTTCGGAACAGAGGGAGT 59.021 47.619 0.00 0.00 0.00 3.85
3671 4157 9.646427 GACAGATTTTAATCACTCTCTTGTACT 57.354 33.333 5.36 0.00 37.89 2.73
3672 4158 9.646427 ACAGATTTTAATCACTCTCTTGTACTC 57.354 33.333 5.36 0.00 37.89 2.59
3673 4159 9.092876 CAGATTTTAATCACTCTCTTGTACTCC 57.907 37.037 5.36 0.00 37.89 3.85
3674 4160 9.041354 AGATTTTAATCACTCTCTTGTACTCCT 57.959 33.333 5.36 0.00 37.89 3.69
3675 4161 9.660180 GATTTTAATCACTCTCTTGTACTCCTT 57.340 33.333 0.00 0.00 35.49 3.36
3676 4162 9.660180 ATTTTAATCACTCTCTTGTACTCCTTC 57.340 33.333 0.00 0.00 0.00 3.46
3677 4163 5.669164 AATCACTCTCTTGTACTCCTTCC 57.331 43.478 0.00 0.00 0.00 3.46
3678 4164 3.082548 TCACTCTCTTGTACTCCTTCCG 58.917 50.000 0.00 0.00 0.00 4.30
3679 4165 2.820787 CACTCTCTTGTACTCCTTCCGT 59.179 50.000 0.00 0.00 0.00 4.69
3680 4166 3.083293 ACTCTCTTGTACTCCTTCCGTC 58.917 50.000 0.00 0.00 0.00 4.79
3681 4167 2.424246 CTCTCTTGTACTCCTTCCGTCC 59.576 54.545 0.00 0.00 0.00 4.79
3682 4168 1.477295 CTCTTGTACTCCTTCCGTCCC 59.523 57.143 0.00 0.00 0.00 4.46
3683 4169 1.203087 TCTTGTACTCCTTCCGTCCCA 60.203 52.381 0.00 0.00 0.00 4.37
3684 4170 1.621814 CTTGTACTCCTTCCGTCCCAA 59.378 52.381 0.00 0.00 0.00 4.12
3685 4171 1.719529 TGTACTCCTTCCGTCCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
3686 4172 2.048601 TGTACTCCTTCCGTCCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
3687 4173 2.640826 TGTACTCCTTCCGTCCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
3688 4174 2.971901 ACTCCTTCCGTCCCAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
3689 4175 2.791655 ACTCCTTCCGTCCCAAAATTC 58.208 47.619 0.00 0.00 0.00 2.17
3690 4176 2.375509 ACTCCTTCCGTCCCAAAATTCT 59.624 45.455 0.00 0.00 0.00 2.40
3691 4177 3.181433 ACTCCTTCCGTCCCAAAATTCTT 60.181 43.478 0.00 0.00 0.00 2.52
3692 4178 4.042435 ACTCCTTCCGTCCCAAAATTCTTA 59.958 41.667 0.00 0.00 0.00 2.10
3693 4179 5.187621 TCCTTCCGTCCCAAAATTCTTAT 57.812 39.130 0.00 0.00 0.00 1.73
3694 4180 5.190677 TCCTTCCGTCCCAAAATTCTTATC 58.809 41.667 0.00 0.00 0.00 1.75
3695 4181 5.045140 TCCTTCCGTCCCAAAATTCTTATCT 60.045 40.000 0.00 0.00 0.00 1.98
3696 4182 5.652452 CCTTCCGTCCCAAAATTCTTATCTT 59.348 40.000 0.00 0.00 0.00 2.40
3697 4183 6.826741 CCTTCCGTCCCAAAATTCTTATCTTA 59.173 38.462 0.00 0.00 0.00 2.10
3698 4184 7.338449 CCTTCCGTCCCAAAATTCTTATCTTAA 59.662 37.037 0.00 0.00 0.00 1.85
3699 4185 8.638629 TTCCGTCCCAAAATTCTTATCTTAAA 57.361 30.769 0.00 0.00 0.00 1.52
3700 4186 8.817092 TCCGTCCCAAAATTCTTATCTTAAAT 57.183 30.769 0.00 0.00 0.00 1.40
3701 4187 9.250246 TCCGTCCCAAAATTCTTATCTTAAATT 57.750 29.630 0.00 0.00 0.00 1.82
3702 4188 9.869757 CCGTCCCAAAATTCTTATCTTAAATTT 57.130 29.630 0.00 0.00 34.86 1.82
3758 4244 7.870509 AGTGTTAGATACATTCGTACCTACA 57.129 36.000 0.00 0.00 39.39 2.74
3759 4245 7.928103 AGTGTTAGATACATTCGTACCTACAG 58.072 38.462 0.00 0.00 39.39 2.74
3760 4246 7.772292 AGTGTTAGATACATTCGTACCTACAGA 59.228 37.037 0.00 0.00 39.39 3.41
3761 4247 8.400947 GTGTTAGATACATTCGTACCTACAGAA 58.599 37.037 0.00 0.00 39.39 3.02
3762 4248 8.959548 TGTTAGATACATTCGTACCTACAGAAA 58.040 33.333 0.00 0.00 0.00 2.52
3763 4249 9.962783 GTTAGATACATTCGTACCTACAGAAAT 57.037 33.333 0.00 0.00 0.00 2.17
3764 4250 9.961265 TTAGATACATTCGTACCTACAGAAATG 57.039 33.333 0.00 0.00 0.00 2.32
3765 4251 8.008513 AGATACATTCGTACCTACAGAAATGT 57.991 34.615 0.00 0.00 0.00 2.71
3766 4252 9.128404 AGATACATTCGTACCTACAGAAATGTA 57.872 33.333 7.86 7.86 0.00 2.29
3767 4253 9.740239 GATACATTCGTACCTACAGAAATGTAA 57.260 33.333 9.11 0.00 30.27 2.41
3768 4254 9.745880 ATACATTCGTACCTACAGAAATGTAAG 57.254 33.333 9.11 0.00 30.27 2.34
3769 4255 7.833786 ACATTCGTACCTACAGAAATGTAAGA 58.166 34.615 0.00 0.00 0.00 2.10
3770 4256 7.758528 ACATTCGTACCTACAGAAATGTAAGAC 59.241 37.037 0.00 0.00 0.00 3.01
3771 4257 6.822667 TCGTACCTACAGAAATGTAAGACA 57.177 37.500 0.00 0.00 0.00 3.41
3772 4258 7.218228 TCGTACCTACAGAAATGTAAGACAA 57.782 36.000 0.00 0.00 0.00 3.18
3773 4259 7.310664 TCGTACCTACAGAAATGTAAGACAAG 58.689 38.462 0.00 0.00 0.00 3.16
3774 4260 7.175467 TCGTACCTACAGAAATGTAAGACAAGA 59.825 37.037 0.00 0.00 0.00 3.02
3775 4261 7.811236 CGTACCTACAGAAATGTAAGACAAGAA 59.189 37.037 0.00 0.00 0.00 2.52
3776 4262 9.654663 GTACCTACAGAAATGTAAGACAAGAAT 57.345 33.333 0.00 0.00 0.00 2.40
3778 4264 9.574516 ACCTACAGAAATGTAAGACAAGAATTT 57.425 29.630 0.00 0.00 0.00 1.82
3782 4268 8.143835 ACAGAAATGTAAGACAAGAATTTTGGG 58.856 33.333 5.68 0.00 0.00 4.12
3783 4269 8.359642 CAGAAATGTAAGACAAGAATTTTGGGA 58.640 33.333 5.68 0.00 0.00 4.37
3784 4270 9.093458 AGAAATGTAAGACAAGAATTTTGGGAT 57.907 29.630 5.68 0.00 0.00 3.85
3785 4271 9.143631 GAAATGTAAGACAAGAATTTTGGGATG 57.856 33.333 5.68 0.00 0.00 3.51
3786 4272 6.588719 TGTAAGACAAGAATTTTGGGATGG 57.411 37.500 5.68 0.00 0.00 3.51
3787 4273 6.310941 TGTAAGACAAGAATTTTGGGATGGA 58.689 36.000 5.68 0.00 0.00 3.41
3788 4274 5.990120 AAGACAAGAATTTTGGGATGGAG 57.010 39.130 5.68 0.00 0.00 3.86
3789 4275 4.347607 AGACAAGAATTTTGGGATGGAGG 58.652 43.478 5.68 0.00 0.00 4.30
3790 4276 4.044571 AGACAAGAATTTTGGGATGGAGGA 59.955 41.667 5.68 0.00 0.00 3.71
3791 4277 4.750941 ACAAGAATTTTGGGATGGAGGAA 58.249 39.130 5.68 0.00 0.00 3.36
3792 4278 5.154418 ACAAGAATTTTGGGATGGAGGAAA 58.846 37.500 5.68 0.00 0.00 3.13
3793 4279 5.786975 ACAAGAATTTTGGGATGGAGGAAAT 59.213 36.000 5.68 0.00 0.00 2.17
3794 4280 6.959366 ACAAGAATTTTGGGATGGAGGAAATA 59.041 34.615 5.68 0.00 0.00 1.40
3795 4281 7.093333 ACAAGAATTTTGGGATGGAGGAAATAC 60.093 37.037 5.68 0.00 0.00 1.89
3796 4282 6.502138 AGAATTTTGGGATGGAGGAAATACA 58.498 36.000 0.00 0.00 0.00 2.29
3911 4397 2.409948 AGCAAGCCAGGAATGTACTC 57.590 50.000 0.00 0.00 0.00 2.59
3912 4398 1.065126 AGCAAGCCAGGAATGTACTCC 60.065 52.381 0.00 0.00 35.51 3.85
3913 4399 2.019156 GCAAGCCAGGAATGTACTCCC 61.019 57.143 0.00 0.00 35.95 4.30
3914 4400 1.561542 CAAGCCAGGAATGTACTCCCT 59.438 52.381 0.00 0.00 35.95 4.20
3915 4401 1.501582 AGCCAGGAATGTACTCCCTC 58.498 55.000 0.00 0.00 35.95 4.30
3916 4402 0.470341 GCCAGGAATGTACTCCCTCC 59.530 60.000 0.00 0.00 35.95 4.30
3917 4403 0.753262 CCAGGAATGTACTCCCTCCG 59.247 60.000 0.00 0.00 35.95 4.63
3918 4404 1.486211 CAGGAATGTACTCCCTCCGT 58.514 55.000 0.00 0.00 35.95 4.69
3919 4405 1.409427 CAGGAATGTACTCCCTCCGTC 59.591 57.143 0.00 0.00 35.95 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.476007 CCCCAAACGCCCAAAATCCA 61.476 55.000 0.00 0.00 0.00 3.41
1 2 1.295101 CCCCAAACGCCCAAAATCC 59.705 57.895 0.00 0.00 0.00 3.01
3 4 3.477582 CCCCCAAACGCCCAAAAT 58.522 55.556 0.00 0.00 0.00 1.82
22 23 2.126071 ACACATCGGCGTCCTTCG 60.126 61.111 6.85 0.00 43.12 3.79
23 24 2.100631 CCACACATCGGCGTCCTTC 61.101 63.158 6.85 0.00 0.00 3.46
24 25 2.047274 CCACACATCGGCGTCCTT 60.047 61.111 6.85 0.00 0.00 3.36
25 26 4.760047 GCCACACATCGGCGTCCT 62.760 66.667 6.85 0.00 40.35 3.85
42 43 2.671619 ATCAAACCACCACCGCGG 60.672 61.111 26.86 26.86 42.50 6.46
43 44 2.867472 GATCAAACCACCACCGCG 59.133 61.111 0.00 0.00 0.00 6.46
44 45 1.635663 CTCGATCAAACCACCACCGC 61.636 60.000 0.00 0.00 0.00 5.68
45 46 0.320421 ACTCGATCAAACCACCACCG 60.320 55.000 0.00 0.00 0.00 4.94
46 47 1.892209 AACTCGATCAAACCACCACC 58.108 50.000 0.00 0.00 0.00 4.61
47 48 3.000727 CCTAACTCGATCAAACCACCAC 58.999 50.000 0.00 0.00 0.00 4.16
48 49 2.635915 ACCTAACTCGATCAAACCACCA 59.364 45.455 0.00 0.00 0.00 4.17
49 50 3.000727 CACCTAACTCGATCAAACCACC 58.999 50.000 0.00 0.00 0.00 4.61
50 51 3.000727 CCACCTAACTCGATCAAACCAC 58.999 50.000 0.00 0.00 0.00 4.16
51 52 2.635915 ACCACCTAACTCGATCAAACCA 59.364 45.455 0.00 0.00 0.00 3.67
52 53 3.329929 ACCACCTAACTCGATCAAACC 57.670 47.619 0.00 0.00 0.00 3.27
53 54 3.435671 CCAACCACCTAACTCGATCAAAC 59.564 47.826 0.00 0.00 0.00 2.93
54 55 3.670625 CCAACCACCTAACTCGATCAAA 58.329 45.455 0.00 0.00 0.00 2.69
55 56 2.614481 GCCAACCACCTAACTCGATCAA 60.614 50.000 0.00 0.00 0.00 2.57
56 57 1.066430 GCCAACCACCTAACTCGATCA 60.066 52.381 0.00 0.00 0.00 2.92
57 58 1.653151 GCCAACCACCTAACTCGATC 58.347 55.000 0.00 0.00 0.00 3.69
58 59 0.108329 CGCCAACCACCTAACTCGAT 60.108 55.000 0.00 0.00 0.00 3.59
59 60 1.290955 CGCCAACCACCTAACTCGA 59.709 57.895 0.00 0.00 0.00 4.04
60 61 1.740296 CCGCCAACCACCTAACTCG 60.740 63.158 0.00 0.00 0.00 4.18
61 62 0.953960 CACCGCCAACCACCTAACTC 60.954 60.000 0.00 0.00 0.00 3.01
62 63 1.072505 CACCGCCAACCACCTAACT 59.927 57.895 0.00 0.00 0.00 2.24
63 64 2.622962 GCACCGCCAACCACCTAAC 61.623 63.158 0.00 0.00 0.00 2.34
64 65 2.281900 GCACCGCCAACCACCTAA 60.282 61.111 0.00 0.00 0.00 2.69
65 66 3.545124 CTGCACCGCCAACCACCTA 62.545 63.158 0.00 0.00 0.00 3.08
66 67 4.954970 CTGCACCGCCAACCACCT 62.955 66.667 0.00 0.00 0.00 4.00
68 69 3.964875 CACTGCACCGCCAACCAC 61.965 66.667 0.00 0.00 0.00 4.16
77 78 4.947147 TTCACCCGGCACTGCACC 62.947 66.667 2.82 0.00 0.00 5.01
78 79 3.660111 GTTCACCCGGCACTGCAC 61.660 66.667 2.82 0.00 0.00 4.57
79 80 4.182433 TGTTCACCCGGCACTGCA 62.182 61.111 2.82 0.00 0.00 4.41
80 81 3.660111 GTGTTCACCCGGCACTGC 61.660 66.667 0.00 0.00 0.00 4.40
81 82 2.978010 GGTGTTCACCCGGCACTG 60.978 66.667 10.56 0.00 33.96 3.66
82 83 2.829384 ATGGTGTTCACCCGGCACT 61.829 57.895 17.78 0.00 33.96 4.40
83 84 2.282180 ATGGTGTTCACCCGGCAC 60.282 61.111 17.78 0.00 0.00 5.01
84 85 2.282110 CATGGTGTTCACCCGGCA 60.282 61.111 17.78 1.32 0.00 5.69
85 86 3.747976 GCATGGTGTTCACCCGGC 61.748 66.667 17.78 16.43 0.00 6.13
86 87 2.034066 AGCATGGTGTTCACCCGG 59.966 61.111 17.78 11.37 0.00 5.73
87 88 2.981560 GCAGCATGGTGTTCACCCG 61.982 63.158 24.73 10.84 35.86 5.28
88 89 2.639327 GGCAGCATGGTGTTCACCC 61.639 63.158 24.73 13.80 35.86 4.61
89 90 2.964978 GGCAGCATGGTGTTCACC 59.035 61.111 24.73 14.16 35.86 4.02
90 91 2.562912 CGGCAGCATGGTGTTCAC 59.437 61.111 24.73 12.49 35.86 3.18
91 92 2.672651 CCGGCAGCATGGTGTTCA 60.673 61.111 24.73 0.00 35.86 3.18
92 93 2.672996 ACCGGCAGCATGGTGTTC 60.673 61.111 24.73 16.28 37.02 3.18
93 94 2.672996 GACCGGCAGCATGGTGTT 60.673 61.111 24.73 8.26 38.99 3.32
94 95 3.272364 ATGACCGGCAGCATGGTGT 62.272 57.895 24.73 6.10 38.99 4.16
95 96 2.438975 ATGACCGGCAGCATGGTG 60.439 61.111 20.52 20.52 38.99 4.17
96 97 2.438975 CATGACCGGCAGCATGGT 60.439 61.111 19.37 8.25 42.42 3.55
98 99 3.214123 CCCATGACCGGCAGCATG 61.214 66.667 19.91 19.91 41.11 4.06
99 100 3.704231 GACCCATGACCGGCAGCAT 62.704 63.158 0.00 0.00 0.00 3.79
100 101 4.408821 GACCCATGACCGGCAGCA 62.409 66.667 0.00 0.00 0.00 4.41
102 103 4.838152 CCGACCCATGACCGGCAG 62.838 72.222 0.00 0.00 36.62 4.85
106 107 2.760799 TACCCCGACCCATGACCG 60.761 66.667 0.00 0.00 0.00 4.79
107 108 2.440817 CCTACCCCGACCCATGACC 61.441 68.421 0.00 0.00 0.00 4.02
108 109 3.103091 GCCTACCCCGACCCATGAC 62.103 68.421 0.00 0.00 0.00 3.06
109 110 2.766651 GCCTACCCCGACCCATGA 60.767 66.667 0.00 0.00 0.00 3.07
110 111 1.994885 ATTGCCTACCCCGACCCATG 61.995 60.000 0.00 0.00 0.00 3.66
111 112 1.696314 ATTGCCTACCCCGACCCAT 60.696 57.895 0.00 0.00 0.00 4.00
112 113 2.285818 ATTGCCTACCCCGACCCA 60.286 61.111 0.00 0.00 0.00 4.51
113 114 2.192175 CATTGCCTACCCCGACCC 59.808 66.667 0.00 0.00 0.00 4.46
114 115 2.192175 CCATTGCCTACCCCGACC 59.808 66.667 0.00 0.00 0.00 4.79
115 116 1.451387 CACCATTGCCTACCCCGAC 60.451 63.158 0.00 0.00 0.00 4.79
116 117 1.613928 TCACCATTGCCTACCCCGA 60.614 57.895 0.00 0.00 0.00 5.14
117 118 1.451387 GTCACCATTGCCTACCCCG 60.451 63.158 0.00 0.00 0.00 5.73
118 119 1.451387 CGTCACCATTGCCTACCCC 60.451 63.158 0.00 0.00 0.00 4.95
119 120 0.743345 GACGTCACCATTGCCTACCC 60.743 60.000 11.55 0.00 0.00 3.69
120 121 0.249398 AGACGTCACCATTGCCTACC 59.751 55.000 19.50 0.00 0.00 3.18
121 122 1.337823 ACAGACGTCACCATTGCCTAC 60.338 52.381 19.50 0.00 0.00 3.18
122 123 0.973632 ACAGACGTCACCATTGCCTA 59.026 50.000 19.50 0.00 0.00 3.93
123 124 0.603707 CACAGACGTCACCATTGCCT 60.604 55.000 19.50 0.00 0.00 4.75
124 125 1.577328 CCACAGACGTCACCATTGCC 61.577 60.000 19.50 0.00 0.00 4.52
125 126 1.577328 CCCACAGACGTCACCATTGC 61.577 60.000 19.50 0.00 0.00 3.56
126 127 1.577328 GCCCACAGACGTCACCATTG 61.577 60.000 19.50 9.30 0.00 2.82
127 128 1.302511 GCCCACAGACGTCACCATT 60.303 57.895 19.50 0.00 0.00 3.16
128 129 2.347490 GCCCACAGACGTCACCAT 59.653 61.111 19.50 0.00 0.00 3.55
129 130 4.293648 CGCCCACAGACGTCACCA 62.294 66.667 19.50 0.00 0.00 4.17
140 141 4.179579 GAATGAAGCGGCGCCCAC 62.180 66.667 30.40 19.91 0.00 4.61
141 142 4.408821 AGAATGAAGCGGCGCCCA 62.409 61.111 30.40 26.22 0.00 5.36
142 143 3.577313 GAGAATGAAGCGGCGCCC 61.577 66.667 30.40 21.17 0.00 6.13
143 144 3.929948 CGAGAATGAAGCGGCGCC 61.930 66.667 30.40 19.07 0.00 6.53
352 353 4.321008 GCACATCACCATCATCATCCAATC 60.321 45.833 0.00 0.00 0.00 2.67
353 354 3.572682 GCACATCACCATCATCATCCAAT 59.427 43.478 0.00 0.00 0.00 3.16
354 355 2.953648 GCACATCACCATCATCATCCAA 59.046 45.455 0.00 0.00 0.00 3.53
355 356 2.092321 TGCACATCACCATCATCATCCA 60.092 45.455 0.00 0.00 0.00 3.41
395 396 2.489971 CGGTAAGAAACTCCAGCAACA 58.510 47.619 0.00 0.00 0.00 3.33
419 420 3.200825 CACCATCTATCACTGGTCCCTTT 59.799 47.826 0.00 0.00 43.91 3.11
472 473 8.650714 GCATCAAAATCAAAACTAAATCTGGTC 58.349 33.333 0.00 0.00 0.00 4.02
588 595 2.007608 GACAACGCCCCTCAAATAGAC 58.992 52.381 0.00 0.00 0.00 2.59
592 599 1.674322 CCGACAACGCCCCTCAAAT 60.674 57.895 0.00 0.00 38.29 2.32
608 615 1.730064 CTTTCGTATGGTTGTCACCCG 59.270 52.381 0.00 0.00 43.49 5.28
626 633 2.632987 ACCAAGCAAGTCGTAACCTT 57.367 45.000 0.00 0.00 0.00 3.50
628 635 3.656559 TCTAACCAAGCAAGTCGTAACC 58.343 45.455 0.00 0.00 0.00 2.85
629 636 4.927425 TCATCTAACCAAGCAAGTCGTAAC 59.073 41.667 0.00 0.00 0.00 2.50
630 637 4.927425 GTCATCTAACCAAGCAAGTCGTAA 59.073 41.667 0.00 0.00 0.00 3.18
980 1446 6.669631 TCCATAGTATACAGTTGACTCCTCA 58.330 40.000 5.50 0.00 0.00 3.86
1408 1886 1.187087 GAGTCATCTTCCTCCACGGT 58.813 55.000 0.00 0.00 0.00 4.83
2061 2542 0.527817 CCGAGAGTATTCCACGCACC 60.528 60.000 0.00 0.00 0.00 5.01
2329 2810 4.521146 AGGACAACAATGATCCAGATGAC 58.479 43.478 5.93 0.00 34.73 3.06
2543 3024 4.842531 TTCAGGATCTTTAGCCATGACA 57.157 40.909 0.00 0.00 31.71 3.58
2891 3372 6.727697 TCCATGAGATCTTCTCCTATTATGCA 59.272 38.462 0.00 0.00 42.73 3.96
2904 3385 6.546403 CACAGGAATTTCATCCATGAGATCTT 59.454 38.462 0.00 0.00 42.27 2.40
3008 3489 8.777865 TTGTCAAATATCAGAGAGTAAACAGG 57.222 34.615 0.00 0.00 0.00 4.00
3303 3784 9.438291 CTAATAACATAAAGGACATCAAAAGCG 57.562 33.333 0.00 0.00 0.00 4.68
3396 3882 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3397 3883 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3398 3884 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3399 3885 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3400 3886 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3401 3887 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3419 3905 9.579932 AGTCCATTTGAAATCTCTAAAAAGACT 57.420 29.630 0.00 0.00 0.00 3.24
3425 3911 9.567776 TGTTGTAGTCCATTTGAAATCTCTAAA 57.432 29.630 0.00 0.00 0.00 1.85
3426 3912 9.739276 ATGTTGTAGTCCATTTGAAATCTCTAA 57.261 29.630 0.00 0.00 0.00 2.10
3428 3914 9.167311 GTATGTTGTAGTCCATTTGAAATCTCT 57.833 33.333 0.00 0.00 0.00 3.10
3429 3915 8.116753 CGTATGTTGTAGTCCATTTGAAATCTC 58.883 37.037 0.00 0.00 0.00 2.75
3430 3916 7.065803 CCGTATGTTGTAGTCCATTTGAAATCT 59.934 37.037 0.00 0.00 0.00 2.40
3431 3917 7.065324 TCCGTATGTTGTAGTCCATTTGAAATC 59.935 37.037 0.00 0.00 0.00 2.17
3432 3918 6.882140 TCCGTATGTTGTAGTCCATTTGAAAT 59.118 34.615 0.00 0.00 0.00 2.17
3433 3919 6.231951 TCCGTATGTTGTAGTCCATTTGAAA 58.768 36.000 0.00 0.00 0.00 2.69
3434 3920 5.795972 TCCGTATGTTGTAGTCCATTTGAA 58.204 37.500 0.00 0.00 0.00 2.69
3435 3921 5.408880 TCCGTATGTTGTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
3436 3922 5.584649 ACATCCGTATGTTGTAGTCCATTTG 59.415 40.000 0.00 0.00 44.07 2.32
3437 3923 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
3438 3924 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
3439 3925 6.665992 ATACATCCGTATGTTGTAGTCCAT 57.334 37.500 0.00 0.00 44.07 3.41
3440 3926 7.770366 ATATACATCCGTATGTTGTAGTCCA 57.230 36.000 0.00 0.00 44.07 4.02
3441 3927 9.170734 TCTATATACATCCGTATGTTGTAGTCC 57.829 37.037 0.00 0.00 44.07 3.85
3442 3928 9.985318 GTCTATATACATCCGTATGTTGTAGTC 57.015 37.037 0.00 0.00 44.07 2.59
3443 3929 9.511272 TGTCTATATACATCCGTATGTTGTAGT 57.489 33.333 0.00 0.00 44.07 2.73
3479 3965 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3480 3966 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3481 3967 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3482 3968 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3483 3969 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3484 3970 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3485 3971 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3486 3972 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3487 3973 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3488 3974 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3489 3975 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3490 3976 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
3491 3977 4.439057 GGACTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
3492 3978 3.560068 GGGACTACATACGGAGCAAAATG 59.440 47.826 0.00 0.00 0.00 2.32
3493 3979 3.454812 AGGGACTACATACGGAGCAAAAT 59.545 43.478 0.00 0.00 36.02 1.82
3494 3980 2.835764 AGGGACTACATACGGAGCAAAA 59.164 45.455 0.00 0.00 36.02 2.44
3495 3981 2.463752 AGGGACTACATACGGAGCAAA 58.536 47.619 0.00 0.00 36.02 3.68
3496 3982 2.154567 AGGGACTACATACGGAGCAA 57.845 50.000 0.00 0.00 36.02 3.91
3497 3983 1.754803 CAAGGGACTACATACGGAGCA 59.245 52.381 0.00 0.00 38.49 4.26
3498 3984 1.755380 ACAAGGGACTACATACGGAGC 59.245 52.381 0.00 0.00 38.49 4.70
3499 3985 3.430374 CCAACAAGGGACTACATACGGAG 60.430 52.174 0.00 0.00 38.49 4.63
3500 3986 2.498481 CCAACAAGGGACTACATACGGA 59.502 50.000 0.00 0.00 38.49 4.69
3501 3987 2.498481 TCCAACAAGGGACTACATACGG 59.502 50.000 0.00 0.00 38.49 4.02
3502 3988 3.880047 TCCAACAAGGGACTACATACG 57.120 47.619 0.00 0.00 38.49 3.06
3503 3989 5.990668 AGATTCCAACAAGGGACTACATAC 58.009 41.667 0.00 0.00 38.49 2.39
3504 3990 5.964477 AGAGATTCCAACAAGGGACTACATA 59.036 40.000 0.00 0.00 38.49 2.29
3505 3991 4.785376 AGAGATTCCAACAAGGGACTACAT 59.215 41.667 0.00 0.00 38.49 2.29
3506 3992 4.168101 AGAGATTCCAACAAGGGACTACA 58.832 43.478 0.00 0.00 38.49 2.74
3507 3993 4.828072 AGAGATTCCAACAAGGGACTAC 57.172 45.455 0.00 0.00 38.49 2.73
3508 3994 6.945636 TTTAGAGATTCCAACAAGGGACTA 57.054 37.500 0.00 0.00 38.49 2.59
3510 3996 6.715264 TCTTTTTAGAGATTCCAACAAGGGAC 59.285 38.462 0.00 0.00 36.46 4.46
3511 3997 6.715264 GTCTTTTTAGAGATTCCAACAAGGGA 59.285 38.462 0.00 0.00 38.24 4.20
3512 3998 6.717084 AGTCTTTTTAGAGATTCCAACAAGGG 59.283 38.462 0.00 0.00 38.24 3.95
3513 3999 7.751768 AGTCTTTTTAGAGATTCCAACAAGG 57.248 36.000 0.00 0.00 39.47 3.61
3515 4001 9.621629 TGTAAGTCTTTTTAGAGATTCCAACAA 57.378 29.630 0.00 0.00 0.00 2.83
3516 4002 9.793259 ATGTAAGTCTTTTTAGAGATTCCAACA 57.207 29.630 0.00 0.00 0.00 3.33
3520 4006 9.974750 CGAAATGTAAGTCTTTTTAGAGATTCC 57.025 33.333 0.00 0.00 0.00 3.01
3521 4007 9.974750 CCGAAATGTAAGTCTTTTTAGAGATTC 57.025 33.333 0.00 0.00 0.00 2.52
3522 4008 9.720769 TCCGAAATGTAAGTCTTTTTAGAGATT 57.279 29.630 0.00 0.00 0.00 2.40
3523 4009 9.720769 TTCCGAAATGTAAGTCTTTTTAGAGAT 57.279 29.630 0.00 0.00 0.00 2.75
3524 4010 8.985805 GTTCCGAAATGTAAGTCTTTTTAGAGA 58.014 33.333 0.00 0.00 0.00 3.10
3525 4011 8.770828 TGTTCCGAAATGTAAGTCTTTTTAGAG 58.229 33.333 0.00 0.00 0.00 2.43
3526 4012 8.665643 TGTTCCGAAATGTAAGTCTTTTTAGA 57.334 30.769 0.00 0.00 0.00 2.10
3527 4013 8.770828 TCTGTTCCGAAATGTAAGTCTTTTTAG 58.229 33.333 0.00 0.00 0.00 1.85
3528 4014 8.665643 TCTGTTCCGAAATGTAAGTCTTTTTA 57.334 30.769 0.00 0.00 0.00 1.52
3529 4015 7.255139 CCTCTGTTCCGAAATGTAAGTCTTTTT 60.255 37.037 0.00 0.00 0.00 1.94
3530 4016 6.204882 CCTCTGTTCCGAAATGTAAGTCTTTT 59.795 38.462 0.00 0.00 0.00 2.27
3531 4017 5.701290 CCTCTGTTCCGAAATGTAAGTCTTT 59.299 40.000 0.00 0.00 0.00 2.52
3532 4018 5.238583 CCTCTGTTCCGAAATGTAAGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
3533 4019 4.322801 CCCTCTGTTCCGAAATGTAAGTCT 60.323 45.833 0.00 0.00 0.00 3.24
3534 4020 3.933332 CCCTCTGTTCCGAAATGTAAGTC 59.067 47.826 0.00 0.00 0.00 3.01
3535 4021 3.581332 TCCCTCTGTTCCGAAATGTAAGT 59.419 43.478 0.00 0.00 0.00 2.24
3536 4022 4.184629 CTCCCTCTGTTCCGAAATGTAAG 58.815 47.826 0.00 0.00 0.00 2.34
3537 4023 3.581332 ACTCCCTCTGTTCCGAAATGTAA 59.419 43.478 0.00 0.00 0.00 2.41
3538 4024 3.170717 ACTCCCTCTGTTCCGAAATGTA 58.829 45.455 0.00 0.00 0.00 2.29
3539 4025 1.978580 ACTCCCTCTGTTCCGAAATGT 59.021 47.619 0.00 0.00 0.00 2.71
3540 4026 2.770164 ACTCCCTCTGTTCCGAAATG 57.230 50.000 0.00 0.00 0.00 2.32
3541 4027 5.839063 TCATATACTCCCTCTGTTCCGAAAT 59.161 40.000 0.00 0.00 0.00 2.17
3542 4028 5.205821 TCATATACTCCCTCTGTTCCGAAA 58.794 41.667 0.00 0.00 0.00 3.46
3543 4029 4.800023 TCATATACTCCCTCTGTTCCGAA 58.200 43.478 0.00 0.00 0.00 4.30
3544 4030 4.448720 TCATATACTCCCTCTGTTCCGA 57.551 45.455 0.00 0.00 0.00 4.55
3545 4031 5.730296 AATCATATACTCCCTCTGTTCCG 57.270 43.478 0.00 0.00 0.00 4.30
3546 4032 7.283329 ACAAAATCATATACTCCCTCTGTTCC 58.717 38.462 0.00 0.00 0.00 3.62
3547 4033 9.832445 TTACAAAATCATATACTCCCTCTGTTC 57.168 33.333 0.00 0.00 0.00 3.18
3671 4157 3.518992 AAGAATTTTGGGACGGAAGGA 57.481 42.857 0.00 0.00 0.00 3.36
3672 4158 5.193679 AGATAAGAATTTTGGGACGGAAGG 58.806 41.667 0.00 0.00 0.00 3.46
3673 4159 6.759497 AAGATAAGAATTTTGGGACGGAAG 57.241 37.500 0.00 0.00 0.00 3.46
3674 4160 8.638629 TTTAAGATAAGAATTTTGGGACGGAA 57.361 30.769 0.00 0.00 0.00 4.30
3675 4161 8.817092 ATTTAAGATAAGAATTTTGGGACGGA 57.183 30.769 0.00 0.00 0.00 4.69
3676 4162 9.869757 AAATTTAAGATAAGAATTTTGGGACGG 57.130 29.630 0.00 0.00 31.00 4.79
3732 4218 9.394767 TGTAGGTACGAATGTATCTAACACTAA 57.605 33.333 0.00 0.00 43.97 2.24
3733 4219 8.962884 TGTAGGTACGAATGTATCTAACACTA 57.037 34.615 0.00 0.00 43.97 2.74
3734 4220 7.772292 TCTGTAGGTACGAATGTATCTAACACT 59.228 37.037 0.00 0.00 43.97 3.55
3735 4221 7.923888 TCTGTAGGTACGAATGTATCTAACAC 58.076 38.462 0.00 0.00 43.97 3.32
3736 4222 8.510243 TTCTGTAGGTACGAATGTATCTAACA 57.490 34.615 0.00 0.00 43.97 2.41
3737 4223 9.962783 ATTTCTGTAGGTACGAATGTATCTAAC 57.037 33.333 0.00 0.00 43.97 2.34
3738 4224 9.961265 CATTTCTGTAGGTACGAATGTATCTAA 57.039 33.333 0.00 0.00 43.97 2.10
3739 4225 9.128404 ACATTTCTGTAGGTACGAATGTATCTA 57.872 33.333 11.51 0.00 40.28 1.98
3740 4226 8.008513 ACATTTCTGTAGGTACGAATGTATCT 57.991 34.615 11.51 0.00 44.27 1.98
3741 4227 9.740239 TTACATTTCTGTAGGTACGAATGTATC 57.260 33.333 16.18 0.00 39.00 2.24
3742 4228 9.745880 CTTACATTTCTGTAGGTACGAATGTAT 57.254 33.333 16.18 3.79 39.00 2.29
3743 4229 8.959548 TCTTACATTTCTGTAGGTACGAATGTA 58.040 33.333 13.74 13.74 39.00 2.29
3744 4230 7.758528 GTCTTACATTTCTGTAGGTACGAATGT 59.241 37.037 14.99 14.99 39.00 2.71
3745 4231 7.758076 TGTCTTACATTTCTGTAGGTACGAATG 59.242 37.037 0.00 0.00 39.00 2.67
3746 4232 7.833786 TGTCTTACATTTCTGTAGGTACGAAT 58.166 34.615 0.00 0.00 39.00 3.34
3747 4233 7.218228 TGTCTTACATTTCTGTAGGTACGAA 57.782 36.000 0.00 0.00 39.00 3.85
3748 4234 6.822667 TGTCTTACATTTCTGTAGGTACGA 57.177 37.500 0.00 0.00 39.00 3.43
3749 4235 7.310664 TCTTGTCTTACATTTCTGTAGGTACG 58.689 38.462 0.00 0.00 39.00 3.67
3750 4236 9.654663 ATTCTTGTCTTACATTTCTGTAGGTAC 57.345 33.333 0.00 0.00 39.00 3.34
3752 4238 9.574516 AAATTCTTGTCTTACATTTCTGTAGGT 57.425 29.630 0.00 0.00 39.00 3.08
3756 4242 8.143835 CCCAAAATTCTTGTCTTACATTTCTGT 58.856 33.333 0.00 0.00 39.49 3.41
3757 4243 8.359642 TCCCAAAATTCTTGTCTTACATTTCTG 58.640 33.333 0.00 0.00 0.00 3.02
3758 4244 8.477419 TCCCAAAATTCTTGTCTTACATTTCT 57.523 30.769 0.00 0.00 0.00 2.52
3759 4245 9.143631 CATCCCAAAATTCTTGTCTTACATTTC 57.856 33.333 0.00 0.00 0.00 2.17
3760 4246 8.096414 CCATCCCAAAATTCTTGTCTTACATTT 58.904 33.333 0.00 0.00 0.00 2.32
3761 4247 7.454380 TCCATCCCAAAATTCTTGTCTTACATT 59.546 33.333 0.00 0.00 0.00 2.71
3762 4248 6.953520 TCCATCCCAAAATTCTTGTCTTACAT 59.046 34.615 0.00 0.00 0.00 2.29
3763 4249 6.310941 TCCATCCCAAAATTCTTGTCTTACA 58.689 36.000 0.00 0.00 0.00 2.41
3764 4250 6.127619 CCTCCATCCCAAAATTCTTGTCTTAC 60.128 42.308 0.00 0.00 0.00 2.34
3765 4251 5.951747 CCTCCATCCCAAAATTCTTGTCTTA 59.048 40.000 0.00 0.00 0.00 2.10
3766 4252 4.774200 CCTCCATCCCAAAATTCTTGTCTT 59.226 41.667 0.00 0.00 0.00 3.01
3767 4253 4.044571 TCCTCCATCCCAAAATTCTTGTCT 59.955 41.667 0.00 0.00 0.00 3.41
3768 4254 4.344104 TCCTCCATCCCAAAATTCTTGTC 58.656 43.478 0.00 0.00 0.00 3.18
3769 4255 4.402616 TCCTCCATCCCAAAATTCTTGT 57.597 40.909 0.00 0.00 0.00 3.16
3770 4256 5.743636 TTTCCTCCATCCCAAAATTCTTG 57.256 39.130 0.00 0.00 0.00 3.02
3771 4257 6.959366 TGTATTTCCTCCATCCCAAAATTCTT 59.041 34.615 0.00 0.00 0.00 2.52
3772 4258 6.502138 TGTATTTCCTCCATCCCAAAATTCT 58.498 36.000 0.00 0.00 0.00 2.40
3773 4259 6.790232 TGTATTTCCTCCATCCCAAAATTC 57.210 37.500 0.00 0.00 0.00 2.17
3774 4260 6.500049 TGTTGTATTTCCTCCATCCCAAAATT 59.500 34.615 0.00 0.00 0.00 1.82
3775 4261 6.022315 TGTTGTATTTCCTCCATCCCAAAAT 58.978 36.000 0.00 0.00 0.00 1.82
3776 4262 5.398236 TGTTGTATTTCCTCCATCCCAAAA 58.602 37.500 0.00 0.00 0.00 2.44
3777 4263 5.004361 TGTTGTATTTCCTCCATCCCAAA 57.996 39.130 0.00 0.00 0.00 3.28
3778 4264 4.666412 TGTTGTATTTCCTCCATCCCAA 57.334 40.909 0.00 0.00 0.00 4.12
3779 4265 4.229353 TCATGTTGTATTTCCTCCATCCCA 59.771 41.667 0.00 0.00 0.00 4.37
3780 4266 4.792068 TCATGTTGTATTTCCTCCATCCC 58.208 43.478 0.00 0.00 0.00 3.85
3781 4267 6.966534 AATCATGTTGTATTTCCTCCATCC 57.033 37.500 0.00 0.00 0.00 3.51
3782 4268 8.253113 ACAAAATCATGTTGTATTTCCTCCATC 58.747 33.333 0.00 0.00 37.44 3.51
3783 4269 8.137745 ACAAAATCATGTTGTATTTCCTCCAT 57.862 30.769 0.00 0.00 37.44 3.41
3784 4270 7.537596 ACAAAATCATGTTGTATTTCCTCCA 57.462 32.000 0.00 0.00 37.44 3.86
3785 4271 9.921637 TTTACAAAATCATGTTGTATTTCCTCC 57.078 29.630 0.97 0.00 40.26 4.30
3844 4330 8.306761 CCCTTAAAAAGTTGTGCATTAGAGAAT 58.693 33.333 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.