Multiple sequence alignment - TraesCS7B01G181800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G181800 chr7B 100.000 4924 0 0 1 4924 277649129 277654052 0.000000e+00 9094.0
1 TraesCS7B01G181800 chr7A 96.590 3490 64 26 706 4164 354433260 354429795 0.000000e+00 5734.0
2 TraesCS7B01G181800 chr7A 89.762 713 64 6 1 706 354434952 354434242 0.000000e+00 904.0
3 TraesCS7B01G181800 chr7A 86.458 192 23 3 4733 4922 354378680 354378490 1.800000e-49 207.0
4 TraesCS7B01G181800 chr7A 90.385 104 9 1 4174 4276 354429499 354429396 8.600000e-28 135.0
5 TraesCS7B01G181800 chr7D 97.422 1513 31 6 2741 4251 345579185 345577679 0.000000e+00 2571.0
6 TraesCS7B01G181800 chr7D 97.286 1400 25 7 1353 2742 345580675 345579279 0.000000e+00 2362.0
7 TraesCS7B01G181800 chr7D 91.496 1364 63 20 1 1336 345582001 345580663 0.000000e+00 1827.0
8 TraesCS7B01G181800 chr7D 84.293 191 27 3 4733 4922 200064355 200064543 3.030000e-42 183.0
9 TraesCS7B01G181800 chr7D 82.812 192 31 2 4732 4922 512975557 512975367 2.360000e-38 171.0
10 TraesCS7B01G181800 chr7D 93.846 65 3 1 4247 4310 345575074 345575010 4.060000e-16 97.1
11 TraesCS7B01G181800 chr4D 78.695 1042 222 0 2866 3907 478765 479806 0.000000e+00 695.0
12 TraesCS7B01G181800 chr4D 91.045 67 6 0 4401 4467 333414768 333414702 1.890000e-14 91.6
13 TraesCS7B01G181800 chr4A 78.599 1042 223 0 2866 3907 210782 211823 0.000000e+00 689.0
14 TraesCS7B01G181800 chr4A 85.057 87 7 3 4653 4734 115306217 115306302 3.160000e-12 84.2
15 TraesCS7B01G181800 chr4B 78.428 1043 223 2 2866 3907 1322625 1321584 0.000000e+00 678.0
16 TraesCS7B01G181800 chr4B 82.105 190 31 2 4734 4922 118079677 118079490 5.100000e-35 159.0
17 TraesCS7B01G181800 chr4B 79.832 119 14 7 4585 4693 407007707 407007589 1.470000e-10 78.7
18 TraesCS7B01G181800 chr1A 91.623 191 12 4 2518 2704 581544077 581543887 1.360000e-65 261.0
19 TraesCS7B01G181800 chr1A 81.915 188 32 2 4736 4922 380057532 380057346 1.830000e-34 158.0
20 TraesCS7B01G181800 chr3A 90.722 194 13 4 2512 2703 561038736 561038546 2.270000e-63 254.0
21 TraesCS7B01G181800 chr3A 91.111 180 15 1 2519 2697 628191911 628192090 4.920000e-60 243.0
22 TraesCS7B01G181800 chr5D 91.713 181 13 2 2518 2697 539985721 539985542 2.940000e-62 250.0
23 TraesCS7B01G181800 chr5D 84.456 193 28 2 4733 4924 160168303 160168112 6.510000e-44 189.0
24 TraesCS7B01G181800 chrUn 91.257 183 10 3 2521 2697 30689238 30689420 1.370000e-60 244.0
25 TraesCS7B01G181800 chr5A 89.583 192 20 0 2509 2700 341143602 341143411 1.370000e-60 244.0
26 TraesCS7B01G181800 chr5A 88.571 70 8 0 4398 4467 58111332 58111263 8.780000e-13 86.1
27 TraesCS7B01G181800 chr6A 88.384 198 20 3 2509 2704 39005793 39005597 8.240000e-58 235.0
28 TraesCS7B01G181800 chr2D 82.703 185 30 2 4733 4916 174123100 174123283 3.940000e-36 163.0
29 TraesCS7B01G181800 chr6B 82.199 191 28 4 4734 4922 159122721 159122535 5.100000e-35 159.0
30 TraesCS7B01G181800 chr6B 90.000 50 5 0 4401 4450 506461428 506461379 1.140000e-06 65.8
31 TraesCS7B01G181800 chr1D 81.915 188 31 3 4736 4922 321508098 321507913 6.600000e-34 156.0
32 TraesCS7B01G181800 chr1B 78.199 211 29 13 4540 4733 394848125 394848335 8.660000e-23 119.0
33 TraesCS7B01G181800 chr1B 78.378 185 22 13 4565 4733 641057950 641058132 2.420000e-18 104.0
34 TraesCS7B01G181800 chr3D 75.943 212 30 16 4540 4734 213518270 213518063 6.790000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G181800 chr7B 277649129 277654052 4923 False 9094.000000 9094 100.000000 1 4924 1 chr7B.!!$F1 4923
1 TraesCS7B01G181800 chr7A 354429396 354434952 5556 True 2257.666667 5734 92.245667 1 4276 3 chr7A.!!$R2 4275
2 TraesCS7B01G181800 chr7D 345575010 345582001 6991 True 1714.275000 2571 95.012500 1 4310 4 chr7D.!!$R2 4309
3 TraesCS7B01G181800 chr4D 478765 479806 1041 False 695.000000 695 78.695000 2866 3907 1 chr4D.!!$F1 1041
4 TraesCS7B01G181800 chr4A 210782 211823 1041 False 689.000000 689 78.599000 2866 3907 1 chr4A.!!$F1 1041
5 TraesCS7B01G181800 chr4B 1321584 1322625 1041 True 678.000000 678 78.428000 2866 3907 1 chr4B.!!$R1 1041

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 134 0.036164 ACCCTTGTAGCATTGTCGCA 59.964 50.000 0.00 0.0 0.00 5.10 F
569 580 0.038021 TGCCTGGTTGCTAGCATTGA 59.962 50.000 20.13 0.0 0.00 2.57 F
1504 2530 0.902531 CCTGGTCCGTTGTATCCTGT 59.097 55.000 0.00 0.0 0.00 4.00 F
2137 3163 2.186826 CCGCATTTCATCCGGGTCC 61.187 63.158 0.00 0.0 38.42 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1330 2353 0.309922 GGCGATGAACGACGAGGATA 59.690 55.000 0.00 0.0 45.77 2.59 R
2104 3130 0.814457 TGCGGACAATGGGCAAATAC 59.186 50.000 0.00 0.0 33.01 1.89 R
3206 4338 2.158449 GTCATTGACAACCTTCTCAGCG 59.842 50.000 11.93 0.0 32.09 5.18 R
3998 5130 1.933181 TGTCGCGCTAAATGATGGAAG 59.067 47.619 5.56 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.798380 TGCCGCAACATCATCGAG 58.202 55.556 0.00 0.00 0.00 4.04
22 23 1.633561 CGCAACATCATCGAGACAGT 58.366 50.000 0.00 0.00 0.00 3.55
34 35 0.179034 GAGACAGTGGGGATGCCATC 60.179 60.000 5.30 0.00 0.00 3.51
49 50 0.460109 CCATCGCAACATCCTCACGA 60.460 55.000 0.00 0.00 37.15 4.35
91 92 0.249699 TTCGAAGCATGTGGTCGTGT 60.250 50.000 12.42 0.00 33.51 4.49
132 134 0.036164 ACCCTTGTAGCATTGTCGCA 59.964 50.000 0.00 0.00 0.00 5.10
156 158 1.508632 TTGAAGCAGTCGCCTTGTAC 58.491 50.000 0.00 0.00 39.83 2.90
177 179 0.599204 ATTGTCGCGACCGTTGAAGT 60.599 50.000 34.34 10.40 35.54 3.01
191 193 0.319211 TGAAGTAGTTGGGTGTCGCG 60.319 55.000 0.00 0.00 0.00 5.87
219 221 1.385528 CATCCAGCATTGCAGCACTA 58.614 50.000 11.91 0.00 36.85 2.74
266 268 1.791555 GCAACGAAATCACCATCGCAG 60.792 52.381 0.00 0.00 42.61 5.18
267 269 1.086696 AACGAAATCACCATCGCAGG 58.913 50.000 0.00 0.00 42.61 4.85
270 272 1.942657 CGAAATCACCATCGCAGGATT 59.057 47.619 0.00 0.00 31.71 3.01
279 281 3.062763 CCATCGCAGGATTGTATGAGAC 58.937 50.000 0.00 0.00 0.00 3.36
282 284 1.802508 CGCAGGATTGTATGAGACGCA 60.803 52.381 0.00 0.00 0.00 5.24
307 309 2.876550 GACCTTGTAGACAACAACCACC 59.123 50.000 0.00 0.00 43.22 4.61
308 310 2.508300 ACCTTGTAGACAACAACCACCT 59.492 45.455 0.00 0.00 43.22 4.00
311 313 3.188159 TGTAGACAACAACCACCTGAC 57.812 47.619 0.00 0.00 34.29 3.51
334 336 2.421619 CTGACCTTTGGAGCAACTCTC 58.578 52.381 0.00 0.00 41.15 3.20
337 339 2.037772 GACCTTTGGAGCAACTCTCTCA 59.962 50.000 0.00 0.00 41.60 3.27
454 456 2.250939 GCAAGTGCACACGTGGCTA 61.251 57.895 21.57 8.45 40.38 3.93
456 458 1.145156 AAGTGCACACGTGGCTACA 59.855 52.632 21.57 9.17 36.20 2.74
552 557 3.032609 CGACGCGGGATCATCTGC 61.033 66.667 12.47 0.00 35.78 4.26
556 561 2.281345 GCGGGATCATCTGCCTGG 60.281 66.667 0.00 0.00 31.91 4.45
564 575 0.107508 TCATCTGCCTGGTTGCTAGC 60.108 55.000 8.10 8.10 0.00 3.42
565 576 0.393402 CATCTGCCTGGTTGCTAGCA 60.393 55.000 14.93 14.93 0.00 3.49
566 577 0.549950 ATCTGCCTGGTTGCTAGCAT 59.450 50.000 20.13 0.00 34.16 3.79
567 578 0.329261 TCTGCCTGGTTGCTAGCATT 59.671 50.000 20.13 0.00 34.16 3.56
568 579 0.454600 CTGCCTGGTTGCTAGCATTG 59.545 55.000 20.13 8.83 34.16 2.82
569 580 0.038021 TGCCTGGTTGCTAGCATTGA 59.962 50.000 20.13 0.00 0.00 2.57
757 1764 5.456921 AATGGAAGAGAAGCCCAGATAAA 57.543 39.130 0.00 0.00 32.90 1.40
842 1861 4.899352 AAGTAGCACTTGTCTTCTCCAT 57.101 40.909 1.44 0.00 37.00 3.41
974 1997 5.106078 CCAACCCTCGAGCTATCTAACTATC 60.106 48.000 6.99 0.00 0.00 2.08
975 1998 4.591929 ACCCTCGAGCTATCTAACTATCC 58.408 47.826 6.99 0.00 0.00 2.59
976 1999 3.949113 CCCTCGAGCTATCTAACTATCCC 59.051 52.174 6.99 0.00 0.00 3.85
977 2000 3.623960 CCTCGAGCTATCTAACTATCCCG 59.376 52.174 6.99 0.00 0.00 5.14
978 2001 4.505808 CTCGAGCTATCTAACTATCCCGA 58.494 47.826 0.00 0.00 0.00 5.14
979 2002 5.100344 TCGAGCTATCTAACTATCCCGAT 57.900 43.478 0.00 0.00 0.00 4.18
1242 2265 4.566907 CCGATCCCCTTTTCCTTCTTGTTA 60.567 45.833 0.00 0.00 0.00 2.41
1330 2353 8.417106 CCAGTGATAGAACACAAGAGTATGTAT 58.583 37.037 0.00 0.00 42.45 2.29
1356 2379 1.716050 CGTCGTTCATCGCCAGATATG 59.284 52.381 0.00 0.00 39.67 1.78
1373 2399 9.456147 GCCAGATATGATATACCTATATCGAGT 57.544 37.037 7.51 0.00 44.70 4.18
1504 2530 0.902531 CCTGGTCCGTTGTATCCTGT 59.097 55.000 0.00 0.00 0.00 4.00
2097 3123 4.095036 GCACAGGTTAGCTATTGAACTTCC 59.905 45.833 0.00 0.00 0.00 3.46
2104 3130 7.337942 AGGTTAGCTATTGAACTTCCATCTTTG 59.662 37.037 0.00 0.00 0.00 2.77
2120 3146 4.799564 TCTTTGTATTTGCCCATTGTCC 57.200 40.909 0.00 0.00 0.00 4.02
2137 3163 2.186826 CCGCATTTCATCCGGGTCC 61.187 63.158 0.00 0.00 38.42 4.46
2453 3480 7.862372 ACTGCACTTGAACATGTATTTTAAGTG 59.138 33.333 20.91 20.91 43.69 3.16
2467 3494 9.906660 TGTATTTTAAGTGGAAATGATGTGTTC 57.093 29.630 0.00 0.00 0.00 3.18
2595 3626 9.766277 GTGACTAAATCAAGCATAGAAAGAAAG 57.234 33.333 0.00 0.00 39.72 2.62
2596 3627 9.507329 TGACTAAATCAAGCATAGAAAGAAAGT 57.493 29.630 0.00 0.00 33.02 2.66
2833 3965 3.003378 GGTGGTCAGTTGTGCTTACTTTC 59.997 47.826 0.00 0.00 0.00 2.62
2838 3970 5.448089 GGTCAGTTGTGCTTACTTTCGAAAA 60.448 40.000 12.41 0.00 0.00 2.29
2845 3977 5.585445 TGTGCTTACTTTCGAAAACAACCTA 59.415 36.000 12.41 0.00 0.00 3.08
2912 4044 6.431234 TCTGGCTGGAAGAGAAATTAAAGAAC 59.569 38.462 0.00 0.00 34.07 3.01
3206 4338 1.153549 GATGGAGCGTGGTGGTCTC 60.154 63.158 0.00 0.00 44.62 3.36
3310 4442 4.216042 TGCTGATGTCACATTTGGTTACAG 59.784 41.667 0.00 0.00 37.07 2.74
3980 5112 6.072452 GGAGATCTAGACAACCCAAAGTTTTG 60.072 42.308 0.00 0.00 36.18 2.44
3981 5113 4.911514 TCTAGACAACCCAAAGTTTTGC 57.088 40.909 0.00 0.00 36.18 3.68
3983 5115 2.466846 AGACAACCCAAAGTTTTGCCT 58.533 42.857 0.00 0.00 36.18 4.75
3998 5130 5.048434 AGTTTTGCCTCTGTATCAGAAAAGC 60.048 40.000 1.22 5.39 40.18 3.51
4014 5146 3.427161 AAAGCTTCCATCATTTAGCGC 57.573 42.857 0.00 0.00 38.62 5.92
4023 5155 3.302480 CCATCATTTAGCGCGACAAGTAC 60.302 47.826 12.10 0.00 0.00 2.73
4024 5156 2.949142 TCATTTAGCGCGACAAGTACA 58.051 42.857 12.10 0.00 0.00 2.90
4086 5218 7.086376 GCTATTTTATAACCAGACGATCCGTA 58.914 38.462 0.00 0.00 41.37 4.02
4139 5272 4.501915 CCATGATGGTTTGTTTTGCTCTGT 60.502 41.667 2.54 0.00 31.35 3.41
4258 8286 5.928264 ACGTCTGTTACACCCTTAATTGTAC 59.072 40.000 0.00 0.00 0.00 2.90
4259 8287 5.061311 CGTCTGTTACACCCTTAATTGTACG 59.939 44.000 0.00 0.00 0.00 3.67
4266 8295 5.727434 ACACCCTTAATTGTACGGTTCTAG 58.273 41.667 0.00 0.00 0.00 2.43
4295 8324 8.275040 ACTTGCATCTGGGTAGTATCTAATTTT 58.725 33.333 0.00 0.00 0.00 1.82
4307 8336 3.663995 TCTAATTTTGGACGACGGACA 57.336 42.857 0.00 0.00 0.00 4.02
4310 8339 1.734163 ATTTTGGACGACGGACATCC 58.266 50.000 0.00 0.00 0.00 3.51
4311 8340 0.682852 TTTTGGACGACGGACATCCT 59.317 50.000 0.00 0.00 33.34 3.24
4312 8341 0.245539 TTTGGACGACGGACATCCTC 59.754 55.000 0.00 0.00 33.34 3.71
4313 8342 1.929806 TTGGACGACGGACATCCTCG 61.930 60.000 14.37 14.37 40.21 4.63
4314 8343 2.404995 GGACGACGGACATCCTCGT 61.405 63.158 18.93 18.93 45.48 4.18
4315 8344 1.091771 GGACGACGGACATCCTCGTA 61.092 60.000 18.90 0.00 44.07 3.43
4316 8345 0.027324 GACGACGGACATCCTCGTAC 59.973 60.000 18.90 12.17 44.07 3.67
4317 8346 1.354506 CGACGGACATCCTCGTACC 59.645 63.158 10.03 0.00 39.88 3.34
4318 8347 1.371337 CGACGGACATCCTCGTACCA 61.371 60.000 10.03 0.00 39.88 3.25
4319 8348 0.381089 GACGGACATCCTCGTACCAG 59.619 60.000 0.00 0.00 39.88 4.00
4320 8349 0.034767 ACGGACATCCTCGTACCAGA 60.035 55.000 0.00 0.00 37.88 3.86
4321 8350 1.100510 CGGACATCCTCGTACCAGAA 58.899 55.000 0.00 0.00 0.00 3.02
4322 8351 1.475280 CGGACATCCTCGTACCAGAAA 59.525 52.381 0.00 0.00 0.00 2.52
4323 8352 2.094390 CGGACATCCTCGTACCAGAAAA 60.094 50.000 0.00 0.00 0.00 2.29
4324 8353 3.430374 CGGACATCCTCGTACCAGAAAAT 60.430 47.826 0.00 0.00 0.00 1.82
4325 8354 4.202080 CGGACATCCTCGTACCAGAAAATA 60.202 45.833 0.00 0.00 0.00 1.40
4326 8355 5.509163 CGGACATCCTCGTACCAGAAAATAT 60.509 44.000 0.00 0.00 0.00 1.28
4327 8356 6.294342 CGGACATCCTCGTACCAGAAAATATA 60.294 42.308 0.00 0.00 0.00 0.86
4328 8357 7.091443 GGACATCCTCGTACCAGAAAATATAG 58.909 42.308 0.00 0.00 0.00 1.31
4329 8358 7.255871 GGACATCCTCGTACCAGAAAATATAGT 60.256 40.741 0.00 0.00 0.00 2.12
4330 8359 8.701908 ACATCCTCGTACCAGAAAATATAGTA 57.298 34.615 0.00 0.00 0.00 1.82
4331 8360 8.574737 ACATCCTCGTACCAGAAAATATAGTAC 58.425 37.037 0.00 0.00 0.00 2.73
4332 8361 8.794553 CATCCTCGTACCAGAAAATATAGTACT 58.205 37.037 0.00 0.00 32.89 2.73
4333 8362 8.388484 TCCTCGTACCAGAAAATATAGTACTC 57.612 38.462 0.00 0.00 32.89 2.59
4334 8363 7.446625 TCCTCGTACCAGAAAATATAGTACTCC 59.553 40.741 0.00 0.00 32.89 3.85
4335 8364 7.447853 CCTCGTACCAGAAAATATAGTACTCCT 59.552 40.741 0.00 0.00 32.89 3.69
4336 8365 8.757982 TCGTACCAGAAAATATAGTACTCCTT 57.242 34.615 0.00 0.00 32.89 3.36
4337 8366 9.851686 TCGTACCAGAAAATATAGTACTCCTTA 57.148 33.333 0.00 0.00 32.89 2.69
4366 8395 9.769093 AAAAATTATCGTTTGTAGTAGACATGC 57.231 29.630 0.00 0.00 38.07 4.06
4367 8396 8.487313 AAATTATCGTTTGTAGTAGACATGCA 57.513 30.769 0.00 0.00 38.07 3.96
4368 8397 6.880822 TTATCGTTTGTAGTAGACATGCAC 57.119 37.500 0.00 0.00 38.07 4.57
4369 8398 3.581755 TCGTTTGTAGTAGACATGCACC 58.418 45.455 0.00 0.00 38.07 5.01
4370 8399 3.257375 TCGTTTGTAGTAGACATGCACCT 59.743 43.478 0.00 0.00 38.07 4.00
4371 8400 4.460034 TCGTTTGTAGTAGACATGCACCTA 59.540 41.667 0.00 0.00 38.07 3.08
4372 8401 4.561606 CGTTTGTAGTAGACATGCACCTAC 59.438 45.833 12.35 12.35 38.07 3.18
4373 8402 5.475719 GTTTGTAGTAGACATGCACCTACA 58.524 41.667 18.89 13.67 38.07 2.74
4374 8403 5.731957 TTGTAGTAGACATGCACCTACAA 57.268 39.130 18.89 17.14 42.92 2.41
4375 8404 5.731957 TGTAGTAGACATGCACCTACAAA 57.268 39.130 18.89 8.59 38.11 2.83
4376 8405 6.104146 TGTAGTAGACATGCACCTACAAAA 57.896 37.500 18.89 6.83 38.11 2.44
4377 8406 6.526526 TGTAGTAGACATGCACCTACAAAAA 58.473 36.000 18.89 5.35 38.11 1.94
4378 8407 7.165485 TGTAGTAGACATGCACCTACAAAAAT 58.835 34.615 18.89 6.27 38.11 1.82
4379 8408 6.500684 AGTAGACATGCACCTACAAAAATG 57.499 37.500 18.89 1.29 38.11 2.32
4380 8409 6.003950 AGTAGACATGCACCTACAAAAATGT 58.996 36.000 18.89 4.20 38.11 2.71
4381 8410 7.165485 AGTAGACATGCACCTACAAAAATGTA 58.835 34.615 18.89 0.00 38.11 2.29
4382 8411 7.829211 AGTAGACATGCACCTACAAAAATGTAT 59.171 33.333 18.89 4.43 38.11 2.29
4383 8412 7.088589 AGACATGCACCTACAAAAATGTATC 57.911 36.000 0.00 0.00 0.00 2.24
4384 8413 6.886459 AGACATGCACCTACAAAAATGTATCT 59.114 34.615 0.00 0.00 0.00 1.98
4385 8414 8.046708 AGACATGCACCTACAAAAATGTATCTA 58.953 33.333 0.00 0.00 0.00 1.98
4386 8415 7.985476 ACATGCACCTACAAAAATGTATCTAC 58.015 34.615 0.00 0.00 0.00 2.59
4387 8416 7.829211 ACATGCACCTACAAAAATGTATCTACT 59.171 33.333 0.00 0.00 0.00 2.57
4388 8417 9.325198 CATGCACCTACAAAAATGTATCTACTA 57.675 33.333 0.00 0.00 0.00 1.82
4389 8418 8.712285 TGCACCTACAAAAATGTATCTACTAC 57.288 34.615 0.00 0.00 0.00 2.73
4390 8419 8.315482 TGCACCTACAAAAATGTATCTACTACA 58.685 33.333 0.00 0.00 44.29 2.74
4391 8420 9.158233 GCACCTACAAAAATGTATCTACTACAA 57.842 33.333 0.00 0.00 43.42 2.41
4397 8426 9.243105 ACAAAAATGTATCTACTACAAATGCCT 57.757 29.630 0.00 0.00 43.42 4.75
4404 8433 9.899661 TGTATCTACTACAAATGCCTTTATTGT 57.100 29.630 0.00 0.00 37.40 2.71
4435 8464 9.573133 TTACTATGCATGATCATATAGTTGACG 57.427 33.333 25.60 7.67 37.49 4.35
4436 8465 7.606349 ACTATGCATGATCATATAGTTGACGT 58.394 34.615 19.16 0.00 33.76 4.34
4437 8466 8.739972 ACTATGCATGATCATATAGTTGACGTA 58.260 33.333 19.16 2.33 33.76 3.57
4438 8467 9.230932 CTATGCATGATCATATAGTTGACGTAG 57.769 37.037 10.16 4.91 0.00 3.51
4454 8483 3.991367 ACGTAGTATTTATGGCTCAGCC 58.009 45.455 9.54 9.54 46.18 4.85
4467 8496 3.532892 GCTCAGCCATCGTTTATCATG 57.467 47.619 0.00 0.00 0.00 3.07
4468 8497 2.225019 GCTCAGCCATCGTTTATCATGG 59.775 50.000 0.00 0.00 42.39 3.66
4469 8498 3.470709 CTCAGCCATCGTTTATCATGGT 58.529 45.455 0.00 0.00 41.63 3.55
4470 8499 3.879295 CTCAGCCATCGTTTATCATGGTT 59.121 43.478 0.00 0.00 41.63 3.67
4471 8500 4.269183 TCAGCCATCGTTTATCATGGTTT 58.731 39.130 0.00 0.00 41.63 3.27
4472 8501 5.432645 TCAGCCATCGTTTATCATGGTTTA 58.567 37.500 0.00 0.00 41.63 2.01
4473 8502 6.061441 TCAGCCATCGTTTATCATGGTTTAT 58.939 36.000 0.00 0.00 41.63 1.40
4474 8503 6.204688 TCAGCCATCGTTTATCATGGTTTATC 59.795 38.462 0.00 0.00 41.63 1.75
4475 8504 6.017192 CAGCCATCGTTTATCATGGTTTATCA 60.017 38.462 0.00 0.00 41.63 2.15
4476 8505 6.716628 AGCCATCGTTTATCATGGTTTATCAT 59.283 34.615 0.00 0.00 41.63 2.45
4477 8506 7.231317 AGCCATCGTTTATCATGGTTTATCATT 59.769 33.333 0.00 0.00 41.63 2.57
4478 8507 8.511321 GCCATCGTTTATCATGGTTTATCATTA 58.489 33.333 0.00 0.00 41.63 1.90
4489 8518 9.517868 TCATGGTTTATCATTATCATACATGCA 57.482 29.630 0.00 0.00 33.84 3.96
4490 8519 9.563898 CATGGTTTATCATTATCATACATGCAC 57.436 33.333 0.00 0.00 0.00 4.57
4491 8520 8.688747 TGGTTTATCATTATCATACATGCACA 57.311 30.769 0.00 0.00 0.00 4.57
4492 8521 9.299465 TGGTTTATCATTATCATACATGCACAT 57.701 29.630 0.00 0.00 0.00 3.21
4493 8522 9.778993 GGTTTATCATTATCATACATGCACATC 57.221 33.333 0.00 0.00 0.00 3.06
4494 8523 9.778993 GTTTATCATTATCATACATGCACATCC 57.221 33.333 0.00 0.00 0.00 3.51
4495 8524 9.743581 TTTATCATTATCATACATGCACATCCT 57.256 29.630 0.00 0.00 0.00 3.24
4496 8525 7.625828 ATCATTATCATACATGCACATCCTG 57.374 36.000 0.00 0.00 0.00 3.86
4497 8526 6.771573 TCATTATCATACATGCACATCCTGA 58.228 36.000 0.00 0.00 0.00 3.86
4498 8527 7.399634 TCATTATCATACATGCACATCCTGAT 58.600 34.615 0.00 0.00 0.00 2.90
4499 8528 8.542080 TCATTATCATACATGCACATCCTGATA 58.458 33.333 0.00 0.00 0.00 2.15
4500 8529 8.610035 CATTATCATACATGCACATCCTGATAC 58.390 37.037 0.00 0.00 0.00 2.24
4501 8530 5.549742 TCATACATGCACATCCTGATACA 57.450 39.130 0.00 0.00 0.00 2.29
4502 8531 5.299949 TCATACATGCACATCCTGATACAC 58.700 41.667 0.00 0.00 0.00 2.90
4503 8532 3.920231 ACATGCACATCCTGATACACT 57.080 42.857 0.00 0.00 0.00 3.55
4504 8533 3.538591 ACATGCACATCCTGATACACTG 58.461 45.455 0.00 0.00 0.00 3.66
4505 8534 2.028420 TGCACATCCTGATACACTGC 57.972 50.000 0.00 0.00 0.00 4.40
4506 8535 1.278699 TGCACATCCTGATACACTGCA 59.721 47.619 0.00 0.00 0.00 4.41
4507 8536 2.290197 TGCACATCCTGATACACTGCAA 60.290 45.455 0.00 0.00 30.48 4.08
4508 8537 2.749076 GCACATCCTGATACACTGCAAA 59.251 45.455 0.00 0.00 0.00 3.68
4509 8538 3.379372 GCACATCCTGATACACTGCAAAT 59.621 43.478 0.00 0.00 0.00 2.32
4510 8539 4.576053 GCACATCCTGATACACTGCAAATA 59.424 41.667 0.00 0.00 0.00 1.40
4511 8540 5.504665 GCACATCCTGATACACTGCAAATAC 60.505 44.000 0.00 0.00 0.00 1.89
4512 8541 5.585844 CACATCCTGATACACTGCAAATACA 59.414 40.000 0.00 0.00 0.00 2.29
4513 8542 6.261603 CACATCCTGATACACTGCAAATACAT 59.738 38.462 0.00 0.00 0.00 2.29
4514 8543 6.830324 ACATCCTGATACACTGCAAATACATT 59.170 34.615 0.00 0.00 0.00 2.71
4515 8544 6.925610 TCCTGATACACTGCAAATACATTC 57.074 37.500 0.00 0.00 0.00 2.67
4516 8545 6.413892 TCCTGATACACTGCAAATACATTCA 58.586 36.000 0.00 0.00 0.00 2.57
4517 8546 7.056006 TCCTGATACACTGCAAATACATTCAT 58.944 34.615 0.00 0.00 0.00 2.57
4518 8547 8.210265 TCCTGATACACTGCAAATACATTCATA 58.790 33.333 0.00 0.00 0.00 2.15
4519 8548 9.006839 CCTGATACACTGCAAATACATTCATAT 57.993 33.333 0.00 0.00 0.00 1.78
4524 8553 8.962884 ACACTGCAAATACATTCATATAGTCA 57.037 30.769 0.00 0.00 0.00 3.41
4525 8554 9.565090 ACACTGCAAATACATTCATATAGTCAT 57.435 29.630 0.00 0.00 0.00 3.06
4526 8555 9.821662 CACTGCAAATACATTCATATAGTCATG 57.178 33.333 0.00 0.00 0.00 3.07
4527 8556 9.565090 ACTGCAAATACATTCATATAGTCATGT 57.435 29.630 0.00 0.00 34.27 3.21
4602 8631 5.887214 AAAAAGAAGGGGCAATGTTACTT 57.113 34.783 0.00 0.00 0.00 2.24
4603 8632 5.468540 AAAAGAAGGGGCAATGTTACTTC 57.531 39.130 0.00 0.00 38.20 3.01
4605 8634 4.388577 AGAAGGGGCAATGTTACTTCTT 57.611 40.909 8.75 0.00 43.75 2.52
4606 8635 4.740902 AGAAGGGGCAATGTTACTTCTTT 58.259 39.130 8.75 0.00 43.75 2.52
4607 8636 5.147767 AGAAGGGGCAATGTTACTTCTTTT 58.852 37.500 8.75 0.00 43.75 2.27
4608 8637 5.602561 AGAAGGGGCAATGTTACTTCTTTTT 59.397 36.000 8.75 0.00 43.75 1.94
4635 8664 8.635765 ACTTGTGGTTCAAAGTAATATCATGT 57.364 30.769 0.00 0.00 35.48 3.21
4636 8665 9.077885 ACTTGTGGTTCAAAGTAATATCATGTT 57.922 29.630 0.00 0.00 35.48 2.71
4637 8666 9.912634 CTTGTGGTTCAAAGTAATATCATGTTT 57.087 29.630 0.00 0.00 35.48 2.83
4677 8706 8.712285 TGTTGTCACTTTTATATACTAGTGGC 57.288 34.615 15.98 15.98 42.12 5.01
4695 8724 9.257651 ACTAGTGGCAATATTTCGTTATAGAAC 57.742 33.333 0.00 0.00 0.00 3.01
4696 8725 9.256477 CTAGTGGCAATATTTCGTTATAGAACA 57.744 33.333 0.56 0.00 35.06 3.18
4697 8726 8.677148 AGTGGCAATATTTCGTTATAGAACAT 57.323 30.769 0.56 0.00 35.06 2.71
4698 8727 9.120538 AGTGGCAATATTTCGTTATAGAACATT 57.879 29.630 0.56 0.00 35.06 2.71
4699 8728 9.730420 GTGGCAATATTTCGTTATAGAACATTT 57.270 29.630 0.56 0.00 35.06 2.32
4700 8729 9.729023 TGGCAATATTTCGTTATAGAACATTTG 57.271 29.630 0.56 0.00 35.06 2.32
4701 8730 9.730420 GGCAATATTTCGTTATAGAACATTTGT 57.270 29.630 0.56 0.00 35.06 2.83
4717 8746 9.054922 AGAACATTTGTTTGTTTTAATGATGGG 57.945 29.630 0.00 0.00 39.85 4.00
4718 8747 7.200778 ACATTTGTTTGTTTTAATGATGGGC 57.799 32.000 0.00 0.00 33.39 5.36
4719 8748 6.997476 ACATTTGTTTGTTTTAATGATGGGCT 59.003 30.769 0.00 0.00 33.39 5.19
4720 8749 7.501892 ACATTTGTTTGTTTTAATGATGGGCTT 59.498 29.630 0.00 0.00 33.39 4.35
4721 8750 7.489574 TTTGTTTGTTTTAATGATGGGCTTC 57.510 32.000 0.00 0.00 0.00 3.86
4722 8751 5.546526 TGTTTGTTTTAATGATGGGCTTCC 58.453 37.500 0.00 0.00 0.00 3.46
4723 8752 5.306678 TGTTTGTTTTAATGATGGGCTTCCT 59.693 36.000 0.00 0.00 0.00 3.36
4724 8753 5.659440 TTGTTTTAATGATGGGCTTCCTC 57.341 39.130 0.00 0.00 0.00 3.71
4725 8754 4.671831 TGTTTTAATGATGGGCTTCCTCA 58.328 39.130 0.00 0.00 0.00 3.86
4726 8755 5.083122 TGTTTTAATGATGGGCTTCCTCAA 58.917 37.500 0.00 0.00 0.00 3.02
4727 8756 5.541868 TGTTTTAATGATGGGCTTCCTCAAA 59.458 36.000 0.00 0.00 0.00 2.69
4728 8757 6.213195 TGTTTTAATGATGGGCTTCCTCAAAT 59.787 34.615 0.00 0.00 0.00 2.32
4729 8758 5.857471 TTAATGATGGGCTTCCTCAAATG 57.143 39.130 0.00 0.00 0.00 2.32
4730 8759 1.477553 TGATGGGCTTCCTCAAATGC 58.522 50.000 0.00 0.00 0.00 3.56
4731 8760 0.749049 GATGGGCTTCCTCAAATGCC 59.251 55.000 0.00 0.00 44.22 4.40
4733 8762 3.200522 GGCTTCCTCAAATGCCCG 58.799 61.111 0.00 0.00 39.49 6.13
4734 8763 2.491621 GCTTCCTCAAATGCCCGC 59.508 61.111 0.00 0.00 0.00 6.13
4735 8764 2.048603 GCTTCCTCAAATGCCCGCT 61.049 57.895 0.00 0.00 0.00 5.52
4736 8765 1.997928 GCTTCCTCAAATGCCCGCTC 61.998 60.000 0.00 0.00 0.00 5.03
4737 8766 0.677731 CTTCCTCAAATGCCCGCTCA 60.678 55.000 0.00 0.00 0.00 4.26
4738 8767 0.034186 TTCCTCAAATGCCCGCTCAT 60.034 50.000 0.00 0.00 0.00 2.90
4739 8768 0.749091 TCCTCAAATGCCCGCTCATG 60.749 55.000 0.00 0.00 0.00 3.07
4740 8769 1.033746 CCTCAAATGCCCGCTCATGT 61.034 55.000 0.00 0.00 0.00 3.21
4741 8770 1.667236 CTCAAATGCCCGCTCATGTA 58.333 50.000 0.00 0.00 0.00 2.29
4742 8771 2.224606 CTCAAATGCCCGCTCATGTAT 58.775 47.619 0.00 0.00 0.00 2.29
4743 8772 2.620115 CTCAAATGCCCGCTCATGTATT 59.380 45.455 0.00 0.00 0.00 1.89
4744 8773 2.358582 TCAAATGCCCGCTCATGTATTG 59.641 45.455 0.00 0.00 0.00 1.90
4745 8774 0.670162 AATGCCCGCTCATGTATTGC 59.330 50.000 0.00 0.00 0.00 3.56
4755 8784 3.326836 TCATGTATTGCGTGAGGTTGA 57.673 42.857 0.00 0.00 38.14 3.18
4756 8785 3.669536 TCATGTATTGCGTGAGGTTGAA 58.330 40.909 0.00 0.00 38.14 2.69
4757 8786 4.068599 TCATGTATTGCGTGAGGTTGAAA 58.931 39.130 0.00 0.00 38.14 2.69
4758 8787 4.517075 TCATGTATTGCGTGAGGTTGAAAA 59.483 37.500 0.00 0.00 38.14 2.29
4759 8788 4.902443 TGTATTGCGTGAGGTTGAAAAA 57.098 36.364 0.00 0.00 0.00 1.94
4760 8789 4.854399 TGTATTGCGTGAGGTTGAAAAAG 58.146 39.130 0.00 0.00 0.00 2.27
4761 8790 2.202295 TTGCGTGAGGTTGAAAAAGC 57.798 45.000 0.00 0.00 0.00 3.51
4762 8791 1.388547 TGCGTGAGGTTGAAAAAGCT 58.611 45.000 0.00 0.00 0.00 3.74
4763 8792 1.065401 TGCGTGAGGTTGAAAAAGCTG 59.935 47.619 0.00 0.00 0.00 4.24
4764 8793 1.333619 GCGTGAGGTTGAAAAAGCTGA 59.666 47.619 0.00 0.00 0.00 4.26
4765 8794 2.223479 GCGTGAGGTTGAAAAAGCTGAA 60.223 45.455 0.00 0.00 0.00 3.02
4766 8795 3.621794 CGTGAGGTTGAAAAAGCTGAAG 58.378 45.455 0.00 0.00 0.00 3.02
4767 8796 3.065371 CGTGAGGTTGAAAAAGCTGAAGT 59.935 43.478 0.00 0.00 0.00 3.01
4768 8797 4.602006 GTGAGGTTGAAAAAGCTGAAGTC 58.398 43.478 0.00 0.00 0.00 3.01
4769 8798 3.632145 TGAGGTTGAAAAAGCTGAAGTCC 59.368 43.478 0.00 0.00 0.00 3.85
4770 8799 2.618709 AGGTTGAAAAAGCTGAAGTCCG 59.381 45.455 0.00 0.00 0.00 4.79
4771 8800 2.357952 GGTTGAAAAAGCTGAAGTCCGT 59.642 45.455 0.00 0.00 0.00 4.69
4772 8801 3.181490 GGTTGAAAAAGCTGAAGTCCGTT 60.181 43.478 0.00 0.00 0.00 4.44
4773 8802 4.035909 GGTTGAAAAAGCTGAAGTCCGTTA 59.964 41.667 0.00 0.00 0.00 3.18
4774 8803 5.449451 GGTTGAAAAAGCTGAAGTCCGTTAA 60.449 40.000 0.00 0.00 0.00 2.01
4775 8804 5.821516 TGAAAAAGCTGAAGTCCGTTAAA 57.178 34.783 0.00 0.00 0.00 1.52
4776 8805 6.197364 TGAAAAAGCTGAAGTCCGTTAAAA 57.803 33.333 0.00 0.00 0.00 1.52
4777 8806 6.622549 TGAAAAAGCTGAAGTCCGTTAAAAA 58.377 32.000 0.00 0.00 0.00 1.94
4778 8807 6.750039 TGAAAAAGCTGAAGTCCGTTAAAAAG 59.250 34.615 0.00 0.00 0.00 2.27
4779 8808 5.830000 AAAGCTGAAGTCCGTTAAAAAGT 57.170 34.783 0.00 0.00 0.00 2.66
4780 8809 6.930667 AAAGCTGAAGTCCGTTAAAAAGTA 57.069 33.333 0.00 0.00 0.00 2.24
4781 8810 7.506328 AAAGCTGAAGTCCGTTAAAAAGTAT 57.494 32.000 0.00 0.00 0.00 2.12
4782 8811 8.611654 AAAGCTGAAGTCCGTTAAAAAGTATA 57.388 30.769 0.00 0.00 0.00 1.47
4783 8812 8.611654 AAGCTGAAGTCCGTTAAAAAGTATAA 57.388 30.769 0.00 0.00 0.00 0.98
4784 8813 8.611654 AGCTGAAGTCCGTTAAAAAGTATAAA 57.388 30.769 0.00 0.00 0.00 1.40
4785 8814 9.227777 AGCTGAAGTCCGTTAAAAAGTATAAAT 57.772 29.630 0.00 0.00 0.00 1.40
4786 8815 9.486857 GCTGAAGTCCGTTAAAAAGTATAAATC 57.513 33.333 0.00 0.00 0.00 2.17
4802 8831 9.586435 AAGTATAAATCAATTGCTTAACTTGCC 57.414 29.630 12.68 0.00 0.00 4.52
4803 8832 8.748412 AGTATAAATCAATTGCTTAACTTGCCA 58.252 29.630 0.00 0.00 0.00 4.92
4804 8833 9.533253 GTATAAATCAATTGCTTAACTTGCCAT 57.467 29.630 0.00 0.00 0.00 4.40
4805 8834 6.973229 AAATCAATTGCTTAACTTGCCATC 57.027 33.333 0.00 0.00 0.00 3.51
4806 8835 5.664294 ATCAATTGCTTAACTTGCCATCA 57.336 34.783 0.00 0.00 0.00 3.07
4807 8836 5.063180 TCAATTGCTTAACTTGCCATCAG 57.937 39.130 0.00 0.00 0.00 2.90
4808 8837 4.082081 TCAATTGCTTAACTTGCCATCAGG 60.082 41.667 0.00 0.00 38.23 3.86
4809 8838 1.838112 TGCTTAACTTGCCATCAGGG 58.162 50.000 0.00 0.00 40.85 4.45
4810 8839 1.075374 TGCTTAACTTGCCATCAGGGT 59.925 47.619 0.00 0.00 39.65 4.34
4811 8840 2.171003 GCTTAACTTGCCATCAGGGTT 58.829 47.619 0.00 0.00 39.65 4.11
4812 8841 2.094545 GCTTAACTTGCCATCAGGGTTG 60.095 50.000 0.00 0.00 39.65 3.77
4813 8842 2.969821 TAACTTGCCATCAGGGTTGT 57.030 45.000 0.00 0.00 39.65 3.32
4814 8843 2.969821 AACTTGCCATCAGGGTTGTA 57.030 45.000 0.00 0.00 39.65 2.41
4815 8844 3.456380 AACTTGCCATCAGGGTTGTAT 57.544 42.857 0.00 0.00 39.65 2.29
4816 8845 4.584638 AACTTGCCATCAGGGTTGTATA 57.415 40.909 0.00 0.00 39.65 1.47
4817 8846 4.796110 ACTTGCCATCAGGGTTGTATAT 57.204 40.909 0.00 0.00 39.65 0.86
4818 8847 4.464008 ACTTGCCATCAGGGTTGTATATG 58.536 43.478 0.00 0.00 39.65 1.78
4819 8848 4.165950 ACTTGCCATCAGGGTTGTATATGA 59.834 41.667 0.00 0.00 39.65 2.15
4820 8849 4.999469 TGCCATCAGGGTTGTATATGAT 57.001 40.909 0.00 0.00 39.65 2.45
4821 8850 5.323382 TGCCATCAGGGTTGTATATGATT 57.677 39.130 0.00 0.00 39.65 2.57
4822 8851 6.446909 TGCCATCAGGGTTGTATATGATTA 57.553 37.500 0.00 0.00 39.65 1.75
4823 8852 6.846988 TGCCATCAGGGTTGTATATGATTAA 58.153 36.000 0.00 0.00 39.65 1.40
4824 8853 7.469343 TGCCATCAGGGTTGTATATGATTAAT 58.531 34.615 0.00 0.00 39.65 1.40
4825 8854 8.610369 TGCCATCAGGGTTGTATATGATTAATA 58.390 33.333 0.00 0.00 39.65 0.98
4826 8855 8.893727 GCCATCAGGGTTGTATATGATTAATAC 58.106 37.037 0.00 0.00 39.65 1.89
4827 8856 9.958180 CCATCAGGGTTGTATATGATTAATACA 57.042 33.333 0.00 0.00 37.89 2.29
4847 8876 4.874970 ACATTGTGTGAAGAAAATGGAGC 58.125 39.130 0.00 0.00 34.92 4.70
4848 8877 4.341806 ACATTGTGTGAAGAAAATGGAGCA 59.658 37.500 0.00 0.00 34.92 4.26
4849 8878 5.011329 ACATTGTGTGAAGAAAATGGAGCAT 59.989 36.000 0.00 0.00 34.92 3.79
4850 8879 4.508461 TGTGTGAAGAAAATGGAGCATG 57.492 40.909 0.00 0.00 0.00 4.06
4851 8880 4.143543 TGTGTGAAGAAAATGGAGCATGA 58.856 39.130 0.00 0.00 0.00 3.07
4852 8881 4.583907 TGTGTGAAGAAAATGGAGCATGAA 59.416 37.500 0.00 0.00 0.00 2.57
4853 8882 5.068855 TGTGTGAAGAAAATGGAGCATGAAA 59.931 36.000 0.00 0.00 0.00 2.69
4854 8883 5.984926 GTGTGAAGAAAATGGAGCATGAAAA 59.015 36.000 0.00 0.00 0.00 2.29
4855 8884 6.479660 GTGTGAAGAAAATGGAGCATGAAAAA 59.520 34.615 0.00 0.00 0.00 1.94
4915 8944 7.778470 TTTTTATTTTGAAAGGCACGATTGT 57.222 28.000 0.00 0.00 0.00 2.71
4916 8945 8.873215 TTTTTATTTTGAAAGGCACGATTGTA 57.127 26.923 0.00 0.00 0.00 2.41
4917 8946 9.482627 TTTTTATTTTGAAAGGCACGATTGTAT 57.517 25.926 0.00 0.00 0.00 2.29
4918 8947 8.459521 TTTATTTTGAAAGGCACGATTGTATG 57.540 30.769 0.00 0.00 0.00 2.39
4919 8948 5.446143 TTTTGAAAGGCACGATTGTATGT 57.554 34.783 0.00 0.00 0.00 2.29
4920 8949 5.446143 TTTGAAAGGCACGATTGTATGTT 57.554 34.783 0.00 0.00 0.00 2.71
4921 8950 4.418013 TGAAAGGCACGATTGTATGTTG 57.582 40.909 0.00 0.00 0.00 3.33
4922 8951 4.068599 TGAAAGGCACGATTGTATGTTGA 58.931 39.130 0.00 0.00 0.00 3.18
4923 8952 4.699735 TGAAAGGCACGATTGTATGTTGAT 59.300 37.500 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.444624 CGGTCGTGAGGATGTTGCG 61.445 63.158 0.00 0.00 0.00 4.85
49 50 0.740868 CCATGATGTGCTTCGACGGT 60.741 55.000 0.00 0.00 0.00 4.83
91 92 2.814604 CGATGGCCACGGAGATGA 59.185 61.111 8.16 0.00 0.00 2.92
132 134 0.250901 AGGCGACTGCTTCAATGGTT 60.251 50.000 0.00 0.00 41.13 3.67
156 158 1.561717 TTCAACGGTCGCGACAATGG 61.562 55.000 37.26 24.90 0.00 3.16
177 179 0.038892 GTCTTCGCGACACCCAACTA 60.039 55.000 9.15 0.00 42.37 2.24
191 193 1.747355 CAATGCTGGATGGTGGTCTTC 59.253 52.381 0.00 0.00 0.00 2.87
198 200 1.304630 TGCTGCAATGCTGGATGGT 60.305 52.632 13.79 0.00 0.00 3.55
219 221 3.317571 AACTCTGAGGCTGCGGCT 61.318 61.111 18.85 11.06 42.48 5.52
225 227 1.670406 CAAGCGCAACTCTGAGGCT 60.670 57.895 11.47 5.02 35.95 4.58
251 253 2.684881 ACAATCCTGCGATGGTGATTTC 59.315 45.455 0.00 0.00 30.91 2.17
266 268 3.738282 GTCTGATGCGTCTCATACAATCC 59.262 47.826 7.58 0.00 35.05 3.01
267 269 3.738282 GGTCTGATGCGTCTCATACAATC 59.262 47.826 7.58 0.00 35.05 2.67
270 272 2.379005 AGGTCTGATGCGTCTCATACA 58.621 47.619 7.58 0.00 35.05 2.29
279 281 2.654749 TGTCTACAAGGTCTGATGCG 57.345 50.000 0.00 0.00 0.00 4.73
282 284 4.102524 TGGTTGTTGTCTACAAGGTCTGAT 59.897 41.667 0.00 0.00 46.95 2.90
307 309 0.671781 CTCCAAAGGTCAGCGGTCAG 60.672 60.000 0.00 0.00 0.00 3.51
308 310 1.371183 CTCCAAAGGTCAGCGGTCA 59.629 57.895 0.00 0.00 0.00 4.02
311 313 1.600636 TTGCTCCAAAGGTCAGCGG 60.601 57.895 0.00 0.00 35.81 5.52
334 336 1.133253 CAGCCGTCGTTGCAATGAG 59.867 57.895 21.55 12.05 0.00 2.90
337 339 1.231221 TTAACAGCCGTCGTTGCAAT 58.769 45.000 0.59 0.00 0.00 3.56
391 393 0.671251 ATGCGTCCTCAGCTAGTAGC 59.329 55.000 14.62 14.62 42.84 3.58
444 446 0.955428 CATGCCTTGTAGCCACGTGT 60.955 55.000 15.65 0.00 0.00 4.49
447 449 0.676466 TTCCATGCCTTGTAGCCACG 60.676 55.000 0.00 0.00 0.00 4.94
454 456 3.259123 GTCCTTTTCATTCCATGCCTTGT 59.741 43.478 0.00 0.00 0.00 3.16
456 458 2.493278 CGTCCTTTTCATTCCATGCCTT 59.507 45.455 0.00 0.00 0.00 4.35
550 555 0.038021 TCAATGCTAGCAACCAGGCA 59.962 50.000 23.54 0.00 39.06 4.75
552 557 1.098050 GGTCAATGCTAGCAACCAGG 58.902 55.000 25.60 13.16 0.00 4.45
696 721 7.964666 AGCCTTGGAGTATATACCTAATCTC 57.035 40.000 9.32 0.00 0.00 2.75
842 1861 0.487325 TGTGGAGAGAGGAGTTGGGA 59.513 55.000 0.00 0.00 0.00 4.37
974 1997 2.680352 ATCGGGATCGGGATCGGG 60.680 66.667 2.80 0.00 38.69 5.14
975 1998 1.658686 GAGATCGGGATCGGGATCGG 61.659 65.000 15.06 0.00 42.97 4.18
976 1999 1.658686 GGAGATCGGGATCGGGATCG 61.659 65.000 15.06 2.98 42.97 3.69
977 2000 0.323908 AGGAGATCGGGATCGGGATC 60.324 60.000 13.81 13.81 42.48 3.36
978 2001 1.000496 TAGGAGATCGGGATCGGGAT 59.000 55.000 3.19 0.00 42.48 3.85
979 2002 0.037877 GTAGGAGATCGGGATCGGGA 59.962 60.000 3.19 0.00 42.48 5.14
1132 2155 2.763933 GGATAAGTTAAGGGCCGCTAC 58.236 52.381 0.00 0.00 0.00 3.58
1214 2237 2.493091 AGGAAAAGGGGATCGGATCTT 58.507 47.619 16.96 3.76 0.00 2.40
1242 2265 4.096382 GGTTTGCAACGATGGATGAATAGT 59.904 41.667 0.00 0.00 0.00 2.12
1330 2353 0.309922 GGCGATGAACGACGAGGATA 59.690 55.000 0.00 0.00 45.77 2.59
1369 2395 7.439356 TGGATCTAGCAATCTATTTTTCACTCG 59.561 37.037 0.00 0.00 0.00 4.18
1373 2399 8.985315 ACATGGATCTAGCAATCTATTTTTCA 57.015 30.769 0.00 0.00 0.00 2.69
1380 2406 9.494271 GTGATTTAACATGGATCTAGCAATCTA 57.506 33.333 0.00 0.00 0.00 1.98
2097 3123 5.111293 GGACAATGGGCAAATACAAAGATG 58.889 41.667 0.00 0.00 0.00 2.90
2104 3130 0.814457 TGCGGACAATGGGCAAATAC 59.186 50.000 0.00 0.00 33.01 1.89
2137 3163 6.635641 CAGCAGCAAGTGTAAGCAATTATATG 59.364 38.462 0.00 0.00 31.18 1.78
2912 4044 8.186178 AGATAACAACAAGTATACGCTCAAAG 57.814 34.615 0.00 0.00 0.00 2.77
3206 4338 2.158449 GTCATTGACAACCTTCTCAGCG 59.842 50.000 11.93 0.00 32.09 5.18
3310 4442 6.576662 TCTTGTAGATGAGATTATCCGGAC 57.423 41.667 6.12 0.00 0.00 4.79
3980 5112 3.625313 GGAAGCTTTTCTGATACAGAGGC 59.375 47.826 0.00 0.00 41.75 4.70
3981 5113 4.836825 TGGAAGCTTTTCTGATACAGAGG 58.163 43.478 0.00 0.00 41.75 3.69
3983 5115 6.053632 TGATGGAAGCTTTTCTGATACAGA 57.946 37.500 0.00 0.00 38.87 3.41
3998 5130 1.933181 TGTCGCGCTAAATGATGGAAG 59.067 47.619 5.56 0.00 0.00 3.46
4014 5146 9.007252 GTGATACAATAGTACTTGTACTTGTCG 57.993 37.037 17.12 7.84 42.63 4.35
4061 5193 5.924825 ACGGATCGTCTGGTTATAAAATAGC 59.075 40.000 0.00 0.00 33.69 2.97
4229 5648 6.594788 TTAAGGGTGTAACAGACGTAGAAT 57.405 37.500 0.00 0.00 39.98 2.40
4238 5657 5.240121 ACCGTACAATTAAGGGTGTAACAG 58.760 41.667 4.11 0.00 39.98 3.16
4258 8286 2.932614 CAGATGCAAGTTCCTAGAACCG 59.067 50.000 3.91 0.00 0.00 4.44
4259 8287 3.274288 CCAGATGCAAGTTCCTAGAACC 58.726 50.000 3.91 0.00 0.00 3.62
4266 8295 2.789409 ACTACCCAGATGCAAGTTCC 57.211 50.000 0.00 0.00 0.00 3.62
4307 8336 8.937207 AGTACTATATTTTCTGGTACGAGGAT 57.063 34.615 4.95 0.75 38.11 3.24
4310 8339 8.393671 AGGAGTACTATATTTTCTGGTACGAG 57.606 38.462 0.00 0.00 38.11 4.18
4311 8340 8.757982 AAGGAGTACTATATTTTCTGGTACGA 57.242 34.615 0.00 0.00 38.11 3.43
4340 8369 9.769093 GCATGTCTACTACAAACGATAATTTTT 57.231 29.630 0.00 0.00 42.70 1.94
4341 8370 8.941977 TGCATGTCTACTACAAACGATAATTTT 58.058 29.630 0.00 0.00 42.70 1.82
4342 8371 8.388103 GTGCATGTCTACTACAAACGATAATTT 58.612 33.333 0.00 0.00 42.70 1.82
4343 8372 7.011109 GGTGCATGTCTACTACAAACGATAATT 59.989 37.037 0.00 0.00 42.70 1.40
4344 8373 6.479001 GGTGCATGTCTACTACAAACGATAAT 59.521 38.462 0.00 0.00 42.70 1.28
4345 8374 5.808540 GGTGCATGTCTACTACAAACGATAA 59.191 40.000 0.00 0.00 42.70 1.75
4346 8375 5.126545 AGGTGCATGTCTACTACAAACGATA 59.873 40.000 0.00 0.00 42.70 2.92
4347 8376 4.081642 AGGTGCATGTCTACTACAAACGAT 60.082 41.667 0.00 0.00 42.70 3.73
4348 8377 3.257375 AGGTGCATGTCTACTACAAACGA 59.743 43.478 0.00 0.00 42.70 3.85
4349 8378 3.585862 AGGTGCATGTCTACTACAAACG 58.414 45.455 0.00 0.00 42.70 3.60
4350 8379 5.475719 TGTAGGTGCATGTCTACTACAAAC 58.524 41.667 18.78 2.41 42.70 2.93
4351 8380 5.731957 TGTAGGTGCATGTCTACTACAAA 57.268 39.130 18.78 3.56 42.70 2.83
4352 8381 5.731957 TTGTAGGTGCATGTCTACTACAA 57.268 39.130 20.28 20.28 46.42 2.41
4353 8382 5.731957 TTTGTAGGTGCATGTCTACTACA 57.268 39.130 18.78 15.64 43.86 2.74
4354 8383 7.119262 ACATTTTTGTAGGTGCATGTCTACTAC 59.881 37.037 18.78 13.96 37.37 2.73
4355 8384 7.165485 ACATTTTTGTAGGTGCATGTCTACTA 58.835 34.615 18.78 12.43 37.37 1.82
4356 8385 6.003950 ACATTTTTGTAGGTGCATGTCTACT 58.996 36.000 18.78 5.87 37.37 2.57
4357 8386 6.254281 ACATTTTTGTAGGTGCATGTCTAC 57.746 37.500 14.14 14.14 37.09 2.59
4358 8387 8.046708 AGATACATTTTTGTAGGTGCATGTCTA 58.953 33.333 0.00 0.00 0.00 2.59
4359 8388 6.886459 AGATACATTTTTGTAGGTGCATGTCT 59.114 34.615 0.00 0.00 0.00 3.41
4360 8389 7.088589 AGATACATTTTTGTAGGTGCATGTC 57.911 36.000 0.00 0.00 0.00 3.06
4361 8390 7.829211 AGTAGATACATTTTTGTAGGTGCATGT 59.171 33.333 0.00 0.00 0.00 3.21
4362 8391 8.213518 AGTAGATACATTTTTGTAGGTGCATG 57.786 34.615 0.00 0.00 0.00 4.06
4363 8392 9.326413 GTAGTAGATACATTTTTGTAGGTGCAT 57.674 33.333 0.00 0.00 34.26 3.96
4364 8393 8.315482 TGTAGTAGATACATTTTTGTAGGTGCA 58.685 33.333 0.00 0.00 39.52 4.57
4365 8394 8.712285 TGTAGTAGATACATTTTTGTAGGTGC 57.288 34.615 0.00 0.00 39.52 5.01
4371 8400 9.243105 AGGCATTTGTAGTAGATACATTTTTGT 57.757 29.630 0.00 0.00 43.87 2.83
4378 8407 9.899661 ACAATAAAGGCATTTGTAGTAGATACA 57.100 29.630 6.60 0.00 42.76 2.29
4409 8438 9.573133 CGTCAACTATATGATCATGCATAGTAA 57.427 33.333 22.78 15.20 34.02 2.24
4410 8439 8.739972 ACGTCAACTATATGATCATGCATAGTA 58.260 33.333 22.78 11.72 34.02 1.82
4411 8440 7.606349 ACGTCAACTATATGATCATGCATAGT 58.394 34.615 19.16 19.16 36.10 2.12
4412 8441 9.230932 CTACGTCAACTATATGATCATGCATAG 57.769 37.037 18.72 18.40 34.50 2.23
4413 8442 8.739972 ACTACGTCAACTATATGATCATGCATA 58.260 33.333 18.72 8.09 35.41 3.14
4414 8443 7.606349 ACTACGTCAACTATATGATCATGCAT 58.394 34.615 18.72 7.30 0.00 3.96
4415 8444 6.981722 ACTACGTCAACTATATGATCATGCA 58.018 36.000 18.72 4.78 0.00 3.96
4416 8445 9.574458 AATACTACGTCAACTATATGATCATGC 57.426 33.333 18.72 0.00 0.00 4.06
4422 8451 9.850628 GCCATAAATACTACGTCAACTATATGA 57.149 33.333 0.00 0.00 0.00 2.15
4423 8452 9.856488 AGCCATAAATACTACGTCAACTATATG 57.144 33.333 0.00 0.00 0.00 1.78
4425 8454 9.070179 TGAGCCATAAATACTACGTCAACTATA 57.930 33.333 0.00 0.00 0.00 1.31
4426 8455 7.948357 TGAGCCATAAATACTACGTCAACTAT 58.052 34.615 0.00 0.00 0.00 2.12
4427 8456 7.337480 TGAGCCATAAATACTACGTCAACTA 57.663 36.000 0.00 0.00 0.00 2.24
4428 8457 6.216801 TGAGCCATAAATACTACGTCAACT 57.783 37.500 0.00 0.00 0.00 3.16
4429 8458 5.050972 GCTGAGCCATAAATACTACGTCAAC 60.051 44.000 0.00 0.00 0.00 3.18
4430 8459 5.047847 GCTGAGCCATAAATACTACGTCAA 58.952 41.667 0.00 0.00 0.00 3.18
4431 8460 4.617959 GCTGAGCCATAAATACTACGTCA 58.382 43.478 0.00 0.00 0.00 4.35
4447 8476 2.225019 CCATGATAAACGATGGCTGAGC 59.775 50.000 0.00 0.00 33.01 4.26
4448 8477 3.470709 ACCATGATAAACGATGGCTGAG 58.529 45.455 0.00 0.00 42.67 3.35
4449 8478 3.558931 ACCATGATAAACGATGGCTGA 57.441 42.857 0.00 0.00 42.67 4.26
4450 8479 4.637483 AAACCATGATAAACGATGGCTG 57.363 40.909 0.00 0.00 42.67 4.85
4451 8480 6.061441 TGATAAACCATGATAAACGATGGCT 58.939 36.000 0.00 0.00 42.67 4.75
4452 8481 6.312399 TGATAAACCATGATAAACGATGGC 57.688 37.500 0.00 0.00 42.67 4.40
4463 8492 9.517868 TGCATGTATGATAATGATAAACCATGA 57.482 29.630 0.00 0.00 0.00 3.07
4464 8493 9.563898 GTGCATGTATGATAATGATAAACCATG 57.436 33.333 0.00 0.00 0.00 3.66
4465 8494 9.299465 TGTGCATGTATGATAATGATAAACCAT 57.701 29.630 0.00 0.00 0.00 3.55
4466 8495 8.688747 TGTGCATGTATGATAATGATAAACCA 57.311 30.769 0.00 0.00 0.00 3.67
4467 8496 9.778993 GATGTGCATGTATGATAATGATAAACC 57.221 33.333 0.00 0.00 0.00 3.27
4468 8497 9.778993 GGATGTGCATGTATGATAATGATAAAC 57.221 33.333 0.00 0.00 0.00 2.01
4469 8498 9.743581 AGGATGTGCATGTATGATAATGATAAA 57.256 29.630 0.00 0.00 0.00 1.40
4470 8499 9.169592 CAGGATGTGCATGTATGATAATGATAA 57.830 33.333 0.00 0.00 0.00 1.75
4471 8500 8.542080 TCAGGATGTGCATGTATGATAATGATA 58.458 33.333 0.00 0.00 37.40 2.15
4472 8501 7.399634 TCAGGATGTGCATGTATGATAATGAT 58.600 34.615 0.00 0.00 37.40 2.45
4473 8502 6.771573 TCAGGATGTGCATGTATGATAATGA 58.228 36.000 0.00 0.00 37.40 2.57
4474 8503 7.625828 ATCAGGATGTGCATGTATGATAATG 57.374 36.000 0.00 0.00 37.40 1.90
4475 8504 8.323567 TGTATCAGGATGTGCATGTATGATAAT 58.676 33.333 5.85 0.00 37.40 1.28
4476 8505 7.603784 GTGTATCAGGATGTGCATGTATGATAA 59.396 37.037 5.85 0.00 37.40 1.75
4477 8506 7.038799 AGTGTATCAGGATGTGCATGTATGATA 60.039 37.037 0.00 0.00 37.40 2.15
4478 8507 5.936372 GTGTATCAGGATGTGCATGTATGAT 59.064 40.000 0.00 0.00 37.40 2.45
4479 8508 5.070847 AGTGTATCAGGATGTGCATGTATGA 59.929 40.000 0.00 0.00 37.40 2.15
4480 8509 5.178809 CAGTGTATCAGGATGTGCATGTATG 59.821 44.000 0.00 0.00 37.40 2.39
4481 8510 5.303165 CAGTGTATCAGGATGTGCATGTAT 58.697 41.667 0.00 0.00 37.40 2.29
4482 8511 4.696455 CAGTGTATCAGGATGTGCATGTA 58.304 43.478 0.00 0.00 37.40 2.29
4483 8512 3.538591 CAGTGTATCAGGATGTGCATGT 58.461 45.455 0.00 0.00 37.40 3.21
4484 8513 2.289820 GCAGTGTATCAGGATGTGCATG 59.710 50.000 0.00 0.00 37.40 4.06
4485 8514 2.092807 TGCAGTGTATCAGGATGTGCAT 60.093 45.455 0.00 0.00 34.65 3.96
4486 8515 1.278699 TGCAGTGTATCAGGATGTGCA 59.721 47.619 0.00 0.00 37.12 4.57
4487 8516 2.028420 TGCAGTGTATCAGGATGTGC 57.972 50.000 0.00 0.00 37.40 4.57
4488 8517 5.585844 TGTATTTGCAGTGTATCAGGATGTG 59.414 40.000 0.00 0.00 37.40 3.21
4489 8518 5.744171 TGTATTTGCAGTGTATCAGGATGT 58.256 37.500 0.00 0.00 37.40 3.06
4490 8519 6.872628 ATGTATTTGCAGTGTATCAGGATG 57.127 37.500 0.00 0.00 37.54 3.51
4491 8520 7.056006 TGAATGTATTTGCAGTGTATCAGGAT 58.944 34.615 0.00 0.00 0.00 3.24
4492 8521 6.413892 TGAATGTATTTGCAGTGTATCAGGA 58.586 36.000 0.00 0.00 0.00 3.86
4493 8522 6.682423 TGAATGTATTTGCAGTGTATCAGG 57.318 37.500 0.00 0.00 0.00 3.86
4499 8528 8.962884 TGACTATATGAATGTATTTGCAGTGT 57.037 30.769 0.00 0.00 0.00 3.55
4500 8529 9.821662 CATGACTATATGAATGTATTTGCAGTG 57.178 33.333 0.00 0.00 0.00 3.66
4501 8530 9.565090 ACATGACTATATGAATGTATTTGCAGT 57.435 29.630 0.00 0.00 31.63 4.40
4580 8609 5.602561 AGAAGTAACATTGCCCCTTCTTTTT 59.397 36.000 0.00 0.00 38.91 1.94
4581 8610 5.147767 AGAAGTAACATTGCCCCTTCTTTT 58.852 37.500 0.00 0.00 38.91 2.27
4582 8611 4.740902 AGAAGTAACATTGCCCCTTCTTT 58.259 39.130 0.00 0.00 38.91 2.52
4583 8612 4.388577 AGAAGTAACATTGCCCCTTCTT 57.611 40.909 0.00 0.00 38.91 2.52
4584 8613 4.388577 AAGAAGTAACATTGCCCCTTCT 57.611 40.909 0.00 0.00 42.63 2.85
4585 8614 5.468540 AAAAGAAGTAACATTGCCCCTTC 57.531 39.130 0.00 0.00 33.40 3.46
4586 8615 5.887214 AAAAAGAAGTAACATTGCCCCTT 57.113 34.783 0.00 0.00 0.00 3.95
4609 8638 9.733556 ACATGATATTACTTTGAACCACAAGTA 57.266 29.630 0.00 0.00 39.77 2.24
4610 8639 8.635765 ACATGATATTACTTTGAACCACAAGT 57.364 30.769 0.00 0.00 39.77 3.16
4611 8640 9.912634 AAACATGATATTACTTTGAACCACAAG 57.087 29.630 0.00 0.00 39.77 3.16
4651 8680 9.158233 GCCACTAGTATATAAAAGTGACAACAA 57.842 33.333 19.99 0.00 41.47 2.83
4652 8681 8.315482 TGCCACTAGTATATAAAAGTGACAACA 58.685 33.333 19.99 12.68 41.47 3.33
4653 8682 8.712285 TGCCACTAGTATATAAAAGTGACAAC 57.288 34.615 19.99 11.08 41.47 3.32
4654 8683 9.899661 ATTGCCACTAGTATATAAAAGTGACAA 57.100 29.630 20.15 20.15 43.33 3.18
4669 8698 9.257651 GTTCTATAACGAAATATTGCCACTAGT 57.742 33.333 0.00 0.00 0.00 2.57
4670 8699 9.256477 TGTTCTATAACGAAATATTGCCACTAG 57.744 33.333 0.00 0.00 38.53 2.57
4671 8700 9.772973 ATGTTCTATAACGAAATATTGCCACTA 57.227 29.630 0.00 0.00 38.53 2.74
4672 8701 8.677148 ATGTTCTATAACGAAATATTGCCACT 57.323 30.769 0.00 0.00 38.53 4.00
4673 8702 9.730420 AAATGTTCTATAACGAAATATTGCCAC 57.270 29.630 0.00 0.00 38.53 5.01
4674 8703 9.729023 CAAATGTTCTATAACGAAATATTGCCA 57.271 29.630 0.00 0.00 38.53 4.92
4675 8704 9.730420 ACAAATGTTCTATAACGAAATATTGCC 57.270 29.630 0.00 0.00 38.53 4.52
4691 8720 9.054922 CCCATCATTAAAACAAACAAATGTTCT 57.945 29.630 0.00 0.00 42.49 3.01
4692 8721 7.802720 GCCCATCATTAAAACAAACAAATGTTC 59.197 33.333 0.00 0.00 42.49 3.18
4693 8722 7.501892 AGCCCATCATTAAAACAAACAAATGTT 59.498 29.630 0.00 0.00 45.12 2.71
4694 8723 6.997476 AGCCCATCATTAAAACAAACAAATGT 59.003 30.769 0.00 0.00 32.43 2.71
4695 8724 7.437793 AGCCCATCATTAAAACAAACAAATG 57.562 32.000 0.00 0.00 0.00 2.32
4696 8725 7.174772 GGAAGCCCATCATTAAAACAAACAAAT 59.825 33.333 0.00 0.00 0.00 2.32
4697 8726 6.484977 GGAAGCCCATCATTAAAACAAACAAA 59.515 34.615 0.00 0.00 0.00 2.83
4698 8727 5.994668 GGAAGCCCATCATTAAAACAAACAA 59.005 36.000 0.00 0.00 0.00 2.83
4699 8728 5.306678 AGGAAGCCCATCATTAAAACAAACA 59.693 36.000 0.00 0.00 33.88 2.83
4700 8729 5.793817 AGGAAGCCCATCATTAAAACAAAC 58.206 37.500 0.00 0.00 33.88 2.93
4701 8730 5.541868 TGAGGAAGCCCATCATTAAAACAAA 59.458 36.000 0.00 0.00 33.88 2.83
4702 8731 5.083122 TGAGGAAGCCCATCATTAAAACAA 58.917 37.500 0.00 0.00 33.88 2.83
4703 8732 4.671831 TGAGGAAGCCCATCATTAAAACA 58.328 39.130 0.00 0.00 33.88 2.83
4704 8733 5.659440 TTGAGGAAGCCCATCATTAAAAC 57.341 39.130 0.00 0.00 33.88 2.43
4705 8734 6.642430 CATTTGAGGAAGCCCATCATTAAAA 58.358 36.000 0.00 0.00 33.88 1.52
4706 8735 5.395546 GCATTTGAGGAAGCCCATCATTAAA 60.396 40.000 0.00 0.00 33.88 1.52
4707 8736 4.099881 GCATTTGAGGAAGCCCATCATTAA 59.900 41.667 0.00 0.00 33.88 1.40
4708 8737 3.638160 GCATTTGAGGAAGCCCATCATTA 59.362 43.478 0.00 0.00 33.88 1.90
4709 8738 2.433239 GCATTTGAGGAAGCCCATCATT 59.567 45.455 0.00 0.00 33.88 2.57
4710 8739 2.037144 GCATTTGAGGAAGCCCATCAT 58.963 47.619 0.00 0.00 33.88 2.45
4711 8740 1.477553 GCATTTGAGGAAGCCCATCA 58.522 50.000 0.00 0.00 33.88 3.07
4712 8741 0.749049 GGCATTTGAGGAAGCCCATC 59.251 55.000 0.00 0.00 41.25 3.51
4713 8742 2.906268 GGCATTTGAGGAAGCCCAT 58.094 52.632 0.00 0.00 41.25 4.00
4714 8743 4.440145 GGCATTTGAGGAAGCCCA 57.560 55.556 0.00 0.00 41.25 5.36
4716 8745 3.068729 GCGGGCATTTGAGGAAGCC 62.069 63.158 0.00 0.00 46.28 4.35
4717 8746 1.997928 GAGCGGGCATTTGAGGAAGC 61.998 60.000 0.00 0.00 0.00 3.86
4718 8747 0.677731 TGAGCGGGCATTTGAGGAAG 60.678 55.000 0.00 0.00 0.00 3.46
4719 8748 0.034186 ATGAGCGGGCATTTGAGGAA 60.034 50.000 0.00 0.00 0.00 3.36
4720 8749 0.749091 CATGAGCGGGCATTTGAGGA 60.749 55.000 0.00 0.00 0.00 3.71
4721 8750 1.033746 ACATGAGCGGGCATTTGAGG 61.034 55.000 0.00 0.00 0.00 3.86
4722 8751 1.667236 TACATGAGCGGGCATTTGAG 58.333 50.000 0.00 0.00 0.00 3.02
4723 8752 2.346766 ATACATGAGCGGGCATTTGA 57.653 45.000 0.00 0.00 0.00 2.69
4724 8753 2.734670 CAATACATGAGCGGGCATTTG 58.265 47.619 0.00 0.00 0.00 2.32
4725 8754 1.067516 GCAATACATGAGCGGGCATTT 59.932 47.619 0.00 0.00 0.00 2.32
4726 8755 0.670162 GCAATACATGAGCGGGCATT 59.330 50.000 0.00 0.00 0.00 3.56
4727 8756 2.334307 GCAATACATGAGCGGGCAT 58.666 52.632 0.00 0.00 0.00 4.40
4728 8757 3.826221 GCAATACATGAGCGGGCA 58.174 55.556 0.00 0.00 0.00 5.36
4733 8762 1.656652 ACCTCACGCAATACATGAGC 58.343 50.000 0.00 0.00 37.27 4.26
4734 8763 3.261580 TCAACCTCACGCAATACATGAG 58.738 45.455 0.00 0.00 38.35 2.90
4735 8764 3.326836 TCAACCTCACGCAATACATGA 57.673 42.857 0.00 0.00 0.00 3.07
4736 8765 4.418013 TTTCAACCTCACGCAATACATG 57.582 40.909 0.00 0.00 0.00 3.21
4737 8766 5.446143 TTTTTCAACCTCACGCAATACAT 57.554 34.783 0.00 0.00 0.00 2.29
4738 8767 4.791411 GCTTTTTCAACCTCACGCAATACA 60.791 41.667 0.00 0.00 0.00 2.29
4739 8768 3.668656 GCTTTTTCAACCTCACGCAATAC 59.331 43.478 0.00 0.00 0.00 1.89
4740 8769 3.568007 AGCTTTTTCAACCTCACGCAATA 59.432 39.130 0.00 0.00 0.00 1.90
4741 8770 2.362077 AGCTTTTTCAACCTCACGCAAT 59.638 40.909 0.00 0.00 0.00 3.56
4742 8771 1.748493 AGCTTTTTCAACCTCACGCAA 59.252 42.857 0.00 0.00 0.00 4.85
4743 8772 1.065401 CAGCTTTTTCAACCTCACGCA 59.935 47.619 0.00 0.00 0.00 5.24
4744 8773 1.333619 TCAGCTTTTTCAACCTCACGC 59.666 47.619 0.00 0.00 0.00 5.34
4745 8774 3.065371 ACTTCAGCTTTTTCAACCTCACG 59.935 43.478 0.00 0.00 0.00 4.35
4746 8775 4.498177 GGACTTCAGCTTTTTCAACCTCAC 60.498 45.833 0.00 0.00 0.00 3.51
4747 8776 3.632145 GGACTTCAGCTTTTTCAACCTCA 59.368 43.478 0.00 0.00 0.00 3.86
4748 8777 3.304057 CGGACTTCAGCTTTTTCAACCTC 60.304 47.826 0.00 0.00 0.00 3.85
4749 8778 2.618709 CGGACTTCAGCTTTTTCAACCT 59.381 45.455 0.00 0.00 0.00 3.50
4750 8779 2.357952 ACGGACTTCAGCTTTTTCAACC 59.642 45.455 0.00 0.00 0.00 3.77
4751 8780 3.692791 ACGGACTTCAGCTTTTTCAAC 57.307 42.857 0.00 0.00 0.00 3.18
4752 8781 5.821516 TTAACGGACTTCAGCTTTTTCAA 57.178 34.783 0.00 0.00 0.00 2.69
4753 8782 5.821516 TTTAACGGACTTCAGCTTTTTCA 57.178 34.783 0.00 0.00 0.00 2.69
4754 8783 6.750501 ACTTTTTAACGGACTTCAGCTTTTTC 59.249 34.615 0.00 0.00 0.00 2.29
4755 8784 6.627243 ACTTTTTAACGGACTTCAGCTTTTT 58.373 32.000 0.00 0.00 0.00 1.94
4756 8785 6.203808 ACTTTTTAACGGACTTCAGCTTTT 57.796 33.333 0.00 0.00 0.00 2.27
4757 8786 5.830000 ACTTTTTAACGGACTTCAGCTTT 57.170 34.783 0.00 0.00 0.00 3.51
4758 8787 8.611654 TTATACTTTTTAACGGACTTCAGCTT 57.388 30.769 0.00 0.00 0.00 3.74
4759 8788 8.611654 TTTATACTTTTTAACGGACTTCAGCT 57.388 30.769 0.00 0.00 0.00 4.24
4760 8789 9.486857 GATTTATACTTTTTAACGGACTTCAGC 57.513 33.333 0.00 0.00 0.00 4.26
4776 8805 9.586435 GGCAAGTTAAGCAATTGATTTATACTT 57.414 29.630 15.02 16.88 0.00 2.24
4777 8806 8.748412 TGGCAAGTTAAGCAATTGATTTATACT 58.252 29.630 15.02 12.38 0.00 2.12
4778 8807 8.925161 TGGCAAGTTAAGCAATTGATTTATAC 57.075 30.769 15.02 10.43 0.00 1.47
4779 8808 9.748708 GATGGCAAGTTAAGCAATTGATTTATA 57.251 29.630 15.02 0.00 0.00 0.98
4780 8809 8.259411 TGATGGCAAGTTAAGCAATTGATTTAT 58.741 29.630 15.02 0.00 0.00 1.40
4781 8810 7.609960 TGATGGCAAGTTAAGCAATTGATTTA 58.390 30.769 15.02 2.13 0.00 1.40
4782 8811 6.465948 TGATGGCAAGTTAAGCAATTGATTT 58.534 32.000 15.02 7.50 0.00 2.17
4783 8812 6.040209 TGATGGCAAGTTAAGCAATTGATT 57.960 33.333 14.20 14.20 0.00 2.57
4784 8813 5.394883 CCTGATGGCAAGTTAAGCAATTGAT 60.395 40.000 10.34 0.00 0.00 2.57
4785 8814 4.082081 CCTGATGGCAAGTTAAGCAATTGA 60.082 41.667 10.34 0.00 0.00 2.57
4786 8815 4.178540 CCTGATGGCAAGTTAAGCAATTG 58.821 43.478 0.00 0.00 0.00 2.32
4787 8816 3.196254 CCCTGATGGCAAGTTAAGCAATT 59.804 43.478 0.00 0.00 0.00 2.32
4788 8817 2.762327 CCCTGATGGCAAGTTAAGCAAT 59.238 45.455 0.00 0.00 0.00 3.56
4789 8818 2.170166 CCCTGATGGCAAGTTAAGCAA 58.830 47.619 0.00 0.00 0.00 3.91
4790 8819 1.075374 ACCCTGATGGCAAGTTAAGCA 59.925 47.619 0.00 0.00 37.83 3.91
4791 8820 1.839424 ACCCTGATGGCAAGTTAAGC 58.161 50.000 0.00 0.00 37.83 3.09
4792 8821 3.157087 ACAACCCTGATGGCAAGTTAAG 58.843 45.455 0.00 0.00 37.83 1.85
4793 8822 3.237268 ACAACCCTGATGGCAAGTTAA 57.763 42.857 0.00 0.00 37.83 2.01
4794 8823 2.969821 ACAACCCTGATGGCAAGTTA 57.030 45.000 0.00 0.00 37.83 2.24
4795 8824 2.969821 TACAACCCTGATGGCAAGTT 57.030 45.000 0.00 0.00 37.83 2.66
4796 8825 4.165950 TCATATACAACCCTGATGGCAAGT 59.834 41.667 0.00 0.00 37.83 3.16
4797 8826 4.717877 TCATATACAACCCTGATGGCAAG 58.282 43.478 0.00 0.00 37.83 4.01
4798 8827 4.787135 TCATATACAACCCTGATGGCAA 57.213 40.909 0.00 0.00 37.83 4.52
4799 8828 4.999469 ATCATATACAACCCTGATGGCA 57.001 40.909 0.00 0.00 37.83 4.92
4800 8829 7.944729 ATTAATCATATACAACCCTGATGGC 57.055 36.000 0.00 0.00 37.83 4.40
4801 8830 9.958180 TGTATTAATCATATACAACCCTGATGG 57.042 33.333 0.00 0.00 35.98 3.51
4821 8850 8.243426 GCTCCATTTTCTTCACACAATGTATTA 58.757 33.333 0.00 0.00 0.00 0.98
4822 8851 7.092716 GCTCCATTTTCTTCACACAATGTATT 58.907 34.615 0.00 0.00 0.00 1.89
4823 8852 6.209192 TGCTCCATTTTCTTCACACAATGTAT 59.791 34.615 0.00 0.00 0.00 2.29
4824 8853 5.534278 TGCTCCATTTTCTTCACACAATGTA 59.466 36.000 0.00 0.00 0.00 2.29
4825 8854 4.341806 TGCTCCATTTTCTTCACACAATGT 59.658 37.500 0.00 0.00 0.00 2.71
4826 8855 4.873817 TGCTCCATTTTCTTCACACAATG 58.126 39.130 0.00 0.00 0.00 2.82
4827 8856 5.244402 TCATGCTCCATTTTCTTCACACAAT 59.756 36.000 0.00 0.00 0.00 2.71
4828 8857 4.583907 TCATGCTCCATTTTCTTCACACAA 59.416 37.500 0.00 0.00 0.00 3.33
4829 8858 4.143543 TCATGCTCCATTTTCTTCACACA 58.856 39.130 0.00 0.00 0.00 3.72
4830 8859 4.771590 TCATGCTCCATTTTCTTCACAC 57.228 40.909 0.00 0.00 0.00 3.82
4831 8860 5.787953 TTTCATGCTCCATTTTCTTCACA 57.212 34.783 0.00 0.00 0.00 3.58
4891 8920 7.778470 ACAATCGTGCCTTTCAAAATAAAAA 57.222 28.000 0.00 0.00 0.00 1.94
4892 8921 8.920665 CATACAATCGTGCCTTTCAAAATAAAA 58.079 29.630 0.00 0.00 0.00 1.52
4893 8922 8.085296 ACATACAATCGTGCCTTTCAAAATAAA 58.915 29.630 0.00 0.00 0.00 1.40
4894 8923 7.598278 ACATACAATCGTGCCTTTCAAAATAA 58.402 30.769 0.00 0.00 0.00 1.40
4895 8924 7.151999 ACATACAATCGTGCCTTTCAAAATA 57.848 32.000 0.00 0.00 0.00 1.40
4896 8925 6.024552 ACATACAATCGTGCCTTTCAAAAT 57.975 33.333 0.00 0.00 0.00 1.82
4897 8926 5.446143 ACATACAATCGTGCCTTTCAAAA 57.554 34.783 0.00 0.00 0.00 2.44
4898 8927 5.009110 TCAACATACAATCGTGCCTTTCAAA 59.991 36.000 0.00 0.00 0.00 2.69
4899 8928 4.517075 TCAACATACAATCGTGCCTTTCAA 59.483 37.500 0.00 0.00 0.00 2.69
4900 8929 4.068599 TCAACATACAATCGTGCCTTTCA 58.931 39.130 0.00 0.00 0.00 2.69
4901 8930 4.678509 TCAACATACAATCGTGCCTTTC 57.321 40.909 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.