Multiple sequence alignment - TraesCS7B01G181000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G181000 chr7B 100.000 5110 0 0 1 5110 272110812 272105703 0.000000e+00 9437.0
1 TraesCS7B01G181000 chr7B 98.417 379 6 0 4732 5110 372836125 372836503 0.000000e+00 667.0
2 TraesCS7B01G181000 chr7B 86.047 86 12 0 2695 2780 334451812 334451897 5.450000e-15 93.5
3 TraesCS7B01G181000 chr7B 78.261 138 21 5 2268 2402 741932420 741932289 4.240000e-11 80.5
4 TraesCS7B01G181000 chr7D 96.851 3970 59 19 797 4704 270160280 270156315 0.000000e+00 6578.0
5 TraesCS7B01G181000 chr7D 92.525 709 25 19 1 683 270161519 270160813 0.000000e+00 990.0
6 TraesCS7B01G181000 chr7D 91.200 375 28 1 4736 5110 9928882 9928513 5.900000e-139 505.0
7 TraesCS7B01G181000 chr7D 84.229 279 37 5 2 276 192941148 192941423 1.090000e-66 265.0
8 TraesCS7B01G181000 chr7D 82.746 284 38 11 1 279 125911085 125911362 5.110000e-60 243.0
9 TraesCS7B01G181000 chr7D 92.537 67 5 0 2715 2781 189904517 189904583 4.210000e-16 97.1
10 TraesCS7B01G181000 chr7A 95.662 2697 72 14 293 2957 299595004 299592321 0.000000e+00 4290.0
11 TraesCS7B01G181000 chr7A 95.719 1635 53 9 2966 4585 299585611 299583979 0.000000e+00 2615.0
12 TraesCS7B01G181000 chr7A 84.354 294 41 3 1 293 299595686 299595397 3.010000e-72 283.0
13 TraesCS7B01G181000 chr7A 85.317 252 36 1 1 251 202533172 202533423 5.080000e-65 259.0
14 TraesCS7B01G181000 chr7A 83.333 102 14 3 2268 2367 731975054 731974954 1.960000e-14 91.6
15 TraesCS7B01G181000 chr4B 97.866 328 7 0 4732 5059 42541125 42541452 7.430000e-158 568.0
16 TraesCS7B01G181000 chr4B 84.229 279 36 8 6 279 46224176 46223901 1.090000e-66 265.0
17 TraesCS7B01G181000 chr4A 90.000 380 28 2 4732 5110 673442420 673442050 2.770000e-132 483.0
18 TraesCS7B01G181000 chr4A 84.694 196 26 3 3150 3342 719771442 719771636 5.220000e-45 193.0
19 TraesCS7B01G181000 chr2A 90.909 209 18 1 1 208 382344021 382344229 3.900000e-71 279.0
20 TraesCS7B01G181000 chr3D 84.452 283 40 4 1 279 410981142 410981424 5.040000e-70 276.0
21 TraesCS7B01G181000 chr3D 82.653 98 10 5 2271 2367 4109167 4109076 4.240000e-11 80.5
22 TraesCS7B01G181000 chr6D 82.624 282 46 3 1 279 15396959 15397240 3.950000e-61 246.0
23 TraesCS7B01G181000 chr6A 80.938 320 44 8 4802 5110 47629878 47630191 2.380000e-58 237.0
24 TraesCS7B01G181000 chr6A 86.139 101 13 1 2268 2367 28645684 28645584 1.950000e-19 108.0
25 TraesCS7B01G181000 chrUn 79.372 223 39 6 3136 3353 308680878 308681098 3.190000e-32 150.0
26 TraesCS7B01G181000 chrUn 79.372 223 39 6 3136 3353 324198376 324198596 3.190000e-32 150.0
27 TraesCS7B01G181000 chrUn 83.942 137 12 4 2268 2402 103688902 103689030 6.950000e-24 122.0
28 TraesCS7B01G181000 chrUn 84.694 98 8 5 2271 2367 382386094 382386185 1.960000e-14 91.6
29 TraesCS7B01G181000 chr1A 79.372 223 39 6 3136 3353 534915500 534915720 3.190000e-32 150.0
30 TraesCS7B01G181000 chr1A 79.372 223 39 6 3136 3353 534919812 534920032 3.190000e-32 150.0
31 TraesCS7B01G181000 chr1A 78.924 223 40 6 3136 3353 534877524 534877744 1.480000e-30 145.0
32 TraesCS7B01G181000 chr1A 78.924 223 40 6 3136 3353 534896410 534896630 1.480000e-30 145.0
33 TraesCS7B01G181000 chr3B 84.694 98 8 5 2271 2367 6333235 6333144 1.960000e-14 91.6
34 TraesCS7B01G181000 chr1B 97.500 40 1 0 1195 1234 200141844 200141805 9.180000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G181000 chr7B 272105703 272110812 5109 True 9437.0 9437 100.000 1 5110 1 chr7B.!!$R1 5109
1 TraesCS7B01G181000 chr7D 270156315 270161519 5204 True 3784.0 6578 94.688 1 4704 2 chr7D.!!$R2 4703
2 TraesCS7B01G181000 chr7A 299583979 299585611 1632 True 2615.0 2615 95.719 2966 4585 1 chr7A.!!$R1 1619
3 TraesCS7B01G181000 chr7A 299592321 299595686 3365 True 2286.5 4290 90.008 1 2957 2 chr7A.!!$R3 2956

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
884 1701 0.175760 ACGACTTGTGCTCTGTGTGT 59.824 50.000 0.00 0.0 0.00 3.72 F
1102 1935 1.590610 ATCAGCGTCTCGTGCTCTGT 61.591 55.000 0.00 0.0 41.72 3.41 F
1302 2135 2.560542 GCTCTTCTTCTGTCTGTCTCCA 59.439 50.000 0.00 0.0 0.00 3.86 F
1882 2715 4.278170 GCCACCGATCCAAATATGATTTCA 59.722 41.667 0.00 0.0 0.00 2.69 F
3130 4008 1.402456 CGATCGAACAAGGAAGTCGGT 60.402 52.381 10.26 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2525 3367 0.984109 CATGAAACGTGCGGCATTTC 59.016 50.000 17.79 17.79 33.75 2.17 R
2776 3627 1.005097 TGGCAGCAGAATCCACTGATT 59.995 47.619 4.53 0.00 43.91 2.57 R
3051 3923 2.685380 CTCGAACCTGAGGCCCCT 60.685 66.667 0.00 0.00 32.18 4.79 R
3782 4664 3.086600 AGTAGAGCAGGCTGGGGC 61.087 66.667 17.64 1.20 37.82 5.80 R
4972 5880 0.110486 TTCTTCAAGTCCCTGGGCAC 59.890 55.000 8.22 7.52 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.545810 TGTGTGGGAGTGTATGATCCA 58.454 47.619 0.00 0.00 37.33 3.41
178 179 5.125097 GTCCAGTTTGCATGAATCTCATCTT 59.875 40.000 0.00 0.00 34.28 2.40
214 215 1.472480 GTTGAAATGTATGCCCGCAGT 59.528 47.619 0.00 0.00 0.00 4.40
224 225 0.751277 TGCCCGCAGTATTTGATGGG 60.751 55.000 0.00 0.00 43.38 4.00
251 252 0.861866 CGTATCTGTGTCCGCTGACG 60.862 60.000 3.71 0.00 44.86 4.35
317 712 1.986882 AAAACCCAAGACAGAGCTGG 58.013 50.000 0.00 0.00 34.19 4.85
736 1132 9.465985 GATTTTATCGTTTTAACCTTTTCACCA 57.534 29.630 0.00 0.00 0.00 4.17
755 1151 7.945033 TCACCACAAAATTGATCTTTTAAGC 57.055 32.000 0.00 0.00 0.00 3.09
884 1701 0.175760 ACGACTTGTGCTCTGTGTGT 59.824 50.000 0.00 0.00 0.00 3.72
1102 1935 1.590610 ATCAGCGTCTCGTGCTCTGT 61.591 55.000 0.00 0.00 41.72 3.41
1302 2135 2.560542 GCTCTTCTTCTGTCTGTCTCCA 59.439 50.000 0.00 0.00 0.00 3.86
1308 2141 6.894654 TCTTCTTCTGTCTGTCTCCATCTATT 59.105 38.462 0.00 0.00 0.00 1.73
1353 2186 5.614324 ATCTAATGGATCCTTTCGTGTCA 57.386 39.130 15.75 0.00 0.00 3.58
1882 2715 4.278170 GCCACCGATCCAAATATGATTTCA 59.722 41.667 0.00 0.00 0.00 2.69
2027 2860 8.986477 ACAATAAGTGACTTGCCAAATTAATC 57.014 30.769 8.33 0.00 0.00 1.75
2396 3238 7.678837 TGATCAAATAAGGCCAAAAGTGATTT 58.321 30.769 5.01 0.00 0.00 2.17
2521 3363 7.425224 ACCTGATCCGATATAGGGAAAATAG 57.575 40.000 13.20 0.00 37.07 1.73
2525 3367 9.539825 CTGATCCGATATAGGGAAAATAGAATG 57.460 37.037 1.64 0.00 37.07 2.67
2582 3426 5.043248 AGAACATTAAGCTTTGTGCACAAC 58.957 37.500 31.17 20.51 45.94 3.32
3051 3923 4.473196 TGATTGAGCATTGGTTCTACCCTA 59.527 41.667 0.00 0.00 37.50 3.53
3103 3981 4.707448 TCAGACTTGTGTGGCCTTTAAAAA 59.293 37.500 3.32 0.00 0.00 1.94
3130 4008 1.402456 CGATCGAACAAGGAAGTCGGT 60.402 52.381 10.26 0.00 0.00 4.69
3216 4096 2.903350 GCCACGTGGTCGGGTTTT 60.903 61.111 33.92 0.00 39.02 2.43
3379 4261 4.696877 TGTGATCAGCAAAACTATGTCTGG 59.303 41.667 0.00 0.00 0.00 3.86
3420 4302 6.655425 AGCCTAAAAAGGTCTTGAAGTACATC 59.345 38.462 0.00 0.00 0.00 3.06
3699 4581 2.635427 GACTTGTCTCCCTCCTCAAAGT 59.365 50.000 0.00 0.00 0.00 2.66
3897 4779 1.447317 CTTGCCAGACTTGGTTGCGT 61.447 55.000 0.00 0.00 46.80 5.24
3919 4801 6.909357 GCGTCTATTCTTAAGTAGCGAAGTAA 59.091 38.462 14.89 0.00 0.00 2.24
4191 5079 2.678836 CTGCTCCAAGCTTCTCATTCTG 59.321 50.000 0.00 0.00 42.97 3.02
4471 5361 4.023622 GTCTTTCTCCTTTCTTCCTGCAAC 60.024 45.833 0.00 0.00 0.00 4.17
4609 5499 4.688879 CGTGTGCACTTCAGAAGGTTATAA 59.311 41.667 19.41 0.00 0.00 0.98
4617 5507 9.109393 GCACTTCAGAAGGTTATAATGTAATCA 57.891 33.333 14.90 0.00 0.00 2.57
4666 5574 2.825836 GCCACATTCTCTGCCGGG 60.826 66.667 2.18 0.00 0.00 5.73
4729 5637 0.457851 TTTTTGGACAAGTGGTGGCG 59.542 50.000 0.00 0.00 35.23 5.69
4730 5638 2.010582 TTTTGGACAAGTGGTGGCGC 62.011 55.000 0.00 0.00 35.23 6.53
4731 5639 4.947147 TGGACAAGTGGTGGCGCC 62.947 66.667 22.73 22.73 35.23 6.53
4732 5640 4.947147 GGACAAGTGGTGGCGCCA 62.947 66.667 29.03 29.03 46.95 5.69
4744 5652 2.182537 GCGCCAGCAAGGATTTGG 59.817 61.111 0.00 0.00 44.35 3.28
4748 5656 2.662309 CCAGCAAGGATTTGGCAGT 58.338 52.632 0.00 0.00 41.22 4.40
4749 5657 0.529378 CCAGCAAGGATTTGGCAGTC 59.471 55.000 0.00 0.00 41.22 3.51
4750 5658 0.529378 CAGCAAGGATTTGGCAGTCC 59.471 55.000 11.76 11.76 34.79 3.85
4751 5659 0.407139 AGCAAGGATTTGGCAGTCCT 59.593 50.000 15.41 15.41 46.63 3.85
4758 5666 5.450818 AGGATTTGGCAGTCCTTAATACA 57.549 39.130 15.41 0.00 42.09 2.29
4759 5667 6.018433 AGGATTTGGCAGTCCTTAATACAT 57.982 37.500 15.41 0.00 42.09 2.29
4760 5668 7.149202 AGGATTTGGCAGTCCTTAATACATA 57.851 36.000 15.41 0.00 42.09 2.29
4761 5669 7.582719 AGGATTTGGCAGTCCTTAATACATAA 58.417 34.615 15.41 0.00 42.09 1.90
4762 5670 7.721399 AGGATTTGGCAGTCCTTAATACATAAG 59.279 37.037 15.41 0.00 42.09 1.73
4763 5671 7.502561 GGATTTGGCAGTCCTTAATACATAAGT 59.497 37.037 12.27 0.00 39.56 2.24
4764 5672 8.823220 ATTTGGCAGTCCTTAATACATAAGTT 57.177 30.769 0.00 0.00 39.56 2.66
4765 5673 9.914834 ATTTGGCAGTCCTTAATACATAAGTTA 57.085 29.630 0.00 0.00 39.56 2.24
4766 5674 8.726870 TTGGCAGTCCTTAATACATAAGTTAC 57.273 34.615 0.00 0.00 39.56 2.50
4767 5675 7.277396 TGGCAGTCCTTAATACATAAGTTACC 58.723 38.462 0.00 0.00 39.56 2.85
4768 5676 7.126726 TGGCAGTCCTTAATACATAAGTTACCT 59.873 37.037 0.00 0.00 39.56 3.08
4769 5677 8.645110 GGCAGTCCTTAATACATAAGTTACCTA 58.355 37.037 0.00 0.00 39.56 3.08
4770 5678 9.694137 GCAGTCCTTAATACATAAGTTACCTAG 57.306 37.037 0.00 0.00 39.56 3.02
4771 5679 9.694137 CAGTCCTTAATACATAAGTTACCTAGC 57.306 37.037 0.00 0.00 39.56 3.42
4772 5680 9.657728 AGTCCTTAATACATAAGTTACCTAGCT 57.342 33.333 0.00 0.00 39.56 3.32
4777 5685 9.893634 TTAATACATAAGTTACCTAGCTTTGCA 57.106 29.630 0.00 0.00 0.00 4.08
4778 5686 8.801882 AATACATAAGTTACCTAGCTTTGCAA 57.198 30.769 0.00 0.00 0.00 4.08
4779 5687 6.743575 ACATAAGTTACCTAGCTTTGCAAG 57.256 37.500 0.00 0.00 0.00 4.01
4788 5696 2.244000 GCTTTGCAAGCGTAGGACA 58.756 52.632 0.00 0.00 45.74 4.02
4789 5697 0.166814 GCTTTGCAAGCGTAGGACAG 59.833 55.000 0.00 0.00 45.74 3.51
4790 5698 1.512926 CTTTGCAAGCGTAGGACAGT 58.487 50.000 0.00 0.00 0.00 3.55
4791 5699 1.195448 CTTTGCAAGCGTAGGACAGTG 59.805 52.381 0.00 0.00 0.00 3.66
4792 5700 0.391228 TTGCAAGCGTAGGACAGTGA 59.609 50.000 0.00 0.00 0.00 3.41
4793 5701 0.319555 TGCAAGCGTAGGACAGTGAC 60.320 55.000 0.00 0.00 0.00 3.67
4794 5702 1.014564 GCAAGCGTAGGACAGTGACC 61.015 60.000 3.14 3.14 0.00 4.02
4795 5703 0.603569 CAAGCGTAGGACAGTGACCT 59.396 55.000 18.23 18.23 41.05 3.85
4796 5704 0.889306 AAGCGTAGGACAGTGACCTC 59.111 55.000 17.72 8.82 38.76 3.85
4797 5705 0.966370 AGCGTAGGACAGTGACCTCC 60.966 60.000 17.72 5.77 38.76 4.30
4798 5706 0.966370 GCGTAGGACAGTGACCTCCT 60.966 60.000 17.72 11.42 40.26 3.69
4799 5707 1.681166 GCGTAGGACAGTGACCTCCTA 60.681 57.143 17.72 10.39 38.01 2.94
4802 5710 2.930109 AGGACAGTGACCTCCTACAT 57.070 50.000 8.46 0.00 34.93 2.29
4803 5711 2.461695 AGGACAGTGACCTCCTACATG 58.538 52.381 8.46 0.00 34.93 3.21
4804 5712 2.180276 GGACAGTGACCTCCTACATGT 58.820 52.381 2.69 2.69 0.00 3.21
4805 5713 2.567615 GGACAGTGACCTCCTACATGTT 59.432 50.000 2.30 0.00 0.00 2.71
4806 5714 3.368531 GGACAGTGACCTCCTACATGTTC 60.369 52.174 2.30 0.00 0.00 3.18
4807 5715 3.511477 ACAGTGACCTCCTACATGTTCT 58.489 45.455 2.30 0.00 0.00 3.01
4808 5716 4.673968 ACAGTGACCTCCTACATGTTCTA 58.326 43.478 2.30 0.00 0.00 2.10
4809 5717 4.463186 ACAGTGACCTCCTACATGTTCTAC 59.537 45.833 2.30 0.00 0.00 2.59
4810 5718 4.707448 CAGTGACCTCCTACATGTTCTACT 59.293 45.833 2.30 0.00 0.00 2.57
4811 5719 5.186021 CAGTGACCTCCTACATGTTCTACTT 59.814 44.000 2.30 0.00 0.00 2.24
4812 5720 5.780793 AGTGACCTCCTACATGTTCTACTTT 59.219 40.000 2.30 0.00 0.00 2.66
4813 5721 6.952358 AGTGACCTCCTACATGTTCTACTTTA 59.048 38.462 2.30 0.00 0.00 1.85
4814 5722 7.034397 GTGACCTCCTACATGTTCTACTTTAC 58.966 42.308 2.30 0.00 0.00 2.01
4815 5723 6.722590 TGACCTCCTACATGTTCTACTTTACA 59.277 38.462 2.30 0.00 0.00 2.41
4816 5724 7.233962 TGACCTCCTACATGTTCTACTTTACAA 59.766 37.037 2.30 0.00 0.00 2.41
4817 5725 7.384477 ACCTCCTACATGTTCTACTTTACAAC 58.616 38.462 2.30 0.00 0.00 3.32
4818 5726 7.015877 ACCTCCTACATGTTCTACTTTACAACA 59.984 37.037 2.30 0.00 34.61 3.33
4819 5727 7.876068 CCTCCTACATGTTCTACTTTACAACAA 59.124 37.037 2.30 0.00 33.84 2.83
4820 5728 9.268268 CTCCTACATGTTCTACTTTACAACAAA 57.732 33.333 2.30 0.00 33.84 2.83
4821 5729 9.048446 TCCTACATGTTCTACTTTACAACAAAC 57.952 33.333 2.30 0.00 33.84 2.93
4822 5730 8.832521 CCTACATGTTCTACTTTACAACAAACA 58.167 33.333 2.30 0.00 33.84 2.83
4837 5745 7.481275 ACAACAAACAAATTTATTGCTCAGG 57.519 32.000 13.13 4.65 35.93 3.86
4838 5746 6.482973 ACAACAAACAAATTTATTGCTCAGGG 59.517 34.615 13.13 3.44 35.93 4.45
4839 5747 5.550290 ACAAACAAATTTATTGCTCAGGGG 58.450 37.500 13.13 0.00 0.00 4.79
4840 5748 5.306678 ACAAACAAATTTATTGCTCAGGGGA 59.693 36.000 13.13 0.00 0.00 4.81
4841 5749 6.013466 ACAAACAAATTTATTGCTCAGGGGAT 60.013 34.615 13.13 0.00 0.00 3.85
4842 5750 5.603170 ACAAATTTATTGCTCAGGGGATG 57.397 39.130 0.00 0.00 0.00 3.51
4843 5751 5.271598 ACAAATTTATTGCTCAGGGGATGA 58.728 37.500 0.00 0.00 36.21 2.92
4844 5752 5.901276 ACAAATTTATTGCTCAGGGGATGAT 59.099 36.000 0.00 0.00 37.28 2.45
4845 5753 6.041296 ACAAATTTATTGCTCAGGGGATGATC 59.959 38.462 0.00 0.00 37.28 2.92
4846 5754 3.795688 TTATTGCTCAGGGGATGATCC 57.204 47.619 1.94 1.94 37.28 3.36
4847 5755 1.830486 ATTGCTCAGGGGATGATCCT 58.170 50.000 11.87 0.00 37.28 3.24
4848 5756 1.135094 TTGCTCAGGGGATGATCCTC 58.865 55.000 11.87 7.47 37.26 3.71
4856 5764 3.778954 GGGGATGATCCTCTTTGTAGG 57.221 52.381 11.87 0.00 33.02 3.18
4866 5774 3.821033 TCCTCTTTGTAGGAAAAAGCTGC 59.179 43.478 0.00 0.00 42.83 5.25
4867 5775 3.569701 CCTCTTTGTAGGAAAAAGCTGCA 59.430 43.478 1.02 0.00 39.15 4.41
4868 5776 4.540824 CTCTTTGTAGGAAAAAGCTGCAC 58.459 43.478 1.02 0.00 35.12 4.57
4869 5777 3.951037 TCTTTGTAGGAAAAAGCTGCACA 59.049 39.130 1.02 0.00 35.12 4.57
4870 5778 4.400884 TCTTTGTAGGAAAAAGCTGCACAA 59.599 37.500 1.02 0.00 35.12 3.33
4871 5779 4.935352 TTGTAGGAAAAAGCTGCACAAT 57.065 36.364 1.02 0.00 0.00 2.71
4872 5780 4.935352 TGTAGGAAAAAGCTGCACAATT 57.065 36.364 1.02 0.00 0.00 2.32
4873 5781 4.619973 TGTAGGAAAAAGCTGCACAATTG 58.380 39.130 3.24 3.24 0.00 2.32
4874 5782 3.825143 AGGAAAAAGCTGCACAATTGT 57.175 38.095 4.92 4.92 0.00 2.71
4880 5788 1.325355 AGCTGCACAATTGTGAGCTT 58.675 45.000 34.92 26.20 46.77 3.74
4881 5789 1.684983 AGCTGCACAATTGTGAGCTTT 59.315 42.857 34.92 24.82 46.77 3.51
4882 5790 2.101917 AGCTGCACAATTGTGAGCTTTT 59.898 40.909 34.92 24.37 46.77 2.27
4883 5791 3.318839 AGCTGCACAATTGTGAGCTTTTA 59.681 39.130 34.92 18.14 46.77 1.52
4884 5792 4.794003 AGCTGCACAATTGTGAGCTTTTAC 60.794 41.667 34.92 21.85 46.77 2.01
4885 5793 7.177063 AGCTGCACAATTGTGAGCTTTTACA 62.177 40.000 34.92 24.11 46.77 2.41
4886 5794 8.403732 AGCTGCACAATTGTGAGCTTTTACAT 62.404 38.462 34.92 23.02 46.77 2.29
4887 5795 9.768435 AGCTGCACAATTGTGAGCTTTTACATT 62.768 37.037 34.92 22.57 46.77 2.71
4893 5801 9.816354 ACAATTGTGAGCTTTTACATTAAGTTT 57.184 25.926 11.07 0.00 0.00 2.66
4895 5803 9.476202 AATTGTGAGCTTTTACATTAAGTTTCC 57.524 29.630 0.00 0.00 0.00 3.13
4896 5804 7.817418 TGTGAGCTTTTACATTAAGTTTCCT 57.183 32.000 0.00 0.00 0.00 3.36
4897 5805 8.911918 TGTGAGCTTTTACATTAAGTTTCCTA 57.088 30.769 0.00 0.00 0.00 2.94
4898 5806 8.999431 TGTGAGCTTTTACATTAAGTTTCCTAG 58.001 33.333 0.00 0.00 0.00 3.02
4899 5807 8.451748 GTGAGCTTTTACATTAAGTTTCCTAGG 58.548 37.037 0.82 0.82 0.00 3.02
4900 5808 8.380099 TGAGCTTTTACATTAAGTTTCCTAGGA 58.620 33.333 7.62 7.62 0.00 2.94
4901 5809 9.227777 GAGCTTTTACATTAAGTTTCCTAGGAA 57.772 33.333 20.72 20.72 0.00 3.36
4902 5810 9.755122 AGCTTTTACATTAAGTTTCCTAGGAAT 57.245 29.630 24.82 12.84 33.79 3.01
4917 5825 8.682936 TTCCTAGGAATATGAAAAATCTGAGC 57.317 34.615 20.72 0.00 0.00 4.26
4918 5826 8.038862 TCCTAGGAATATGAAAAATCTGAGCT 57.961 34.615 9.71 0.00 0.00 4.09
4919 5827 8.497745 TCCTAGGAATATGAAAAATCTGAGCTT 58.502 33.333 9.71 0.00 0.00 3.74
4920 5828 8.566260 CCTAGGAATATGAAAAATCTGAGCTTG 58.434 37.037 1.05 0.00 0.00 4.01
4921 5829 9.334947 CTAGGAATATGAAAAATCTGAGCTTGA 57.665 33.333 0.00 0.00 0.00 3.02
4922 5830 8.585471 AGGAATATGAAAAATCTGAGCTTGAA 57.415 30.769 0.00 0.00 0.00 2.69
4923 5831 9.198475 AGGAATATGAAAAATCTGAGCTTGAAT 57.802 29.630 0.00 0.00 0.00 2.57
4924 5832 9.245962 GGAATATGAAAAATCTGAGCTTGAATG 57.754 33.333 0.00 0.00 0.00 2.67
4925 5833 9.798994 GAATATGAAAAATCTGAGCTTGAATGT 57.201 29.630 0.00 0.00 0.00 2.71
4927 5835 9.798994 ATATGAAAAATCTGAGCTTGAATGTTC 57.201 29.630 0.00 0.00 0.00 3.18
4928 5836 6.144854 TGAAAAATCTGAGCTTGAATGTTCG 58.855 36.000 0.00 0.00 0.00 3.95
4929 5837 3.754188 AATCTGAGCTTGAATGTTCGC 57.246 42.857 0.00 0.00 0.00 4.70
4930 5838 2.462456 TCTGAGCTTGAATGTTCGCT 57.538 45.000 0.00 0.00 35.03 4.93
4931 5839 2.071540 TCTGAGCTTGAATGTTCGCTG 58.928 47.619 0.00 0.00 31.96 5.18
4932 5840 1.802960 CTGAGCTTGAATGTTCGCTGT 59.197 47.619 0.00 0.00 31.96 4.40
4933 5841 2.221169 TGAGCTTGAATGTTCGCTGTT 58.779 42.857 0.00 0.00 31.96 3.16
4934 5842 2.031769 TGAGCTTGAATGTTCGCTGTTG 60.032 45.455 0.00 0.00 31.96 3.33
4935 5843 1.055338 GCTTGAATGTTCGCTGTTGC 58.945 50.000 0.00 0.00 0.00 4.17
4936 5844 1.600164 GCTTGAATGTTCGCTGTTGCA 60.600 47.619 0.00 0.00 39.64 4.08
4937 5845 2.046313 CTTGAATGTTCGCTGTTGCAC 58.954 47.619 0.00 0.00 39.64 4.57
4938 5846 0.310543 TGAATGTTCGCTGTTGCACC 59.689 50.000 0.00 0.00 39.64 5.01
4939 5847 0.310543 GAATGTTCGCTGTTGCACCA 59.689 50.000 0.00 0.00 39.64 4.17
4940 5848 0.743688 AATGTTCGCTGTTGCACCAA 59.256 45.000 0.00 0.00 39.64 3.67
4941 5849 0.743688 ATGTTCGCTGTTGCACCAAA 59.256 45.000 0.00 0.00 39.64 3.28
4942 5850 0.528017 TGTTCGCTGTTGCACCAAAA 59.472 45.000 0.00 0.00 39.64 2.44
4943 5851 1.067565 TGTTCGCTGTTGCACCAAAAA 60.068 42.857 0.00 0.00 39.64 1.94
4961 5869 4.322080 AAAAAGTTTGCTAGGTGGCTTC 57.678 40.909 0.00 0.00 0.00 3.86
4962 5870 2.959465 AAGTTTGCTAGGTGGCTTCT 57.041 45.000 0.00 0.00 0.00 2.85
4963 5871 4.367039 AAAGTTTGCTAGGTGGCTTCTA 57.633 40.909 0.00 0.00 0.00 2.10
4964 5872 4.367039 AAGTTTGCTAGGTGGCTTCTAA 57.633 40.909 0.00 0.00 0.00 2.10
4965 5873 4.576330 AGTTTGCTAGGTGGCTTCTAAT 57.424 40.909 0.00 0.00 0.00 1.73
4966 5874 4.923415 AGTTTGCTAGGTGGCTTCTAATT 58.077 39.130 0.00 0.00 0.00 1.40
4967 5875 5.325239 AGTTTGCTAGGTGGCTTCTAATTT 58.675 37.500 0.00 0.00 0.00 1.82
4968 5876 5.183904 AGTTTGCTAGGTGGCTTCTAATTTG 59.816 40.000 0.00 0.00 0.00 2.32
4969 5877 3.016736 TGCTAGGTGGCTTCTAATTTGC 58.983 45.455 0.00 0.00 0.00 3.68
4970 5878 2.359214 GCTAGGTGGCTTCTAATTTGCC 59.641 50.000 0.00 0.00 46.26 4.52
4975 5883 2.284263 GGCTTCTAATTTGCCAGTGC 57.716 50.000 0.00 0.00 45.46 4.40
4976 5884 1.134995 GGCTTCTAATTTGCCAGTGCC 60.135 52.381 0.00 0.00 45.46 5.01
4977 5885 1.134995 GCTTCTAATTTGCCAGTGCCC 60.135 52.381 0.00 0.00 36.33 5.36
4978 5886 2.170166 CTTCTAATTTGCCAGTGCCCA 58.830 47.619 0.00 0.00 36.33 5.36
4979 5887 1.838112 TCTAATTTGCCAGTGCCCAG 58.162 50.000 0.00 0.00 36.33 4.45
4980 5888 0.819582 CTAATTTGCCAGTGCCCAGG 59.180 55.000 0.00 0.00 36.33 4.45
4981 5889 0.614415 TAATTTGCCAGTGCCCAGGG 60.614 55.000 0.00 0.00 36.33 4.45
4982 5890 2.384933 AATTTGCCAGTGCCCAGGGA 62.385 55.000 10.89 0.00 36.33 4.20
4983 5891 3.808218 TTTGCCAGTGCCCAGGGAC 62.808 63.158 10.89 4.86 36.33 4.46
4985 5893 3.971702 GCCAGTGCCCAGGGACTT 61.972 66.667 10.89 0.00 44.30 3.01
4986 5894 2.034687 CCAGTGCCCAGGGACTTG 59.965 66.667 10.89 2.11 44.30 3.16
4987 5895 2.528818 CCAGTGCCCAGGGACTTGA 61.529 63.158 10.89 0.00 44.30 3.02
4988 5896 1.455849 CAGTGCCCAGGGACTTGAA 59.544 57.895 10.89 0.00 44.30 2.69
4989 5897 0.607489 CAGTGCCCAGGGACTTGAAG 60.607 60.000 10.89 0.00 44.30 3.02
4990 5898 0.768221 AGTGCCCAGGGACTTGAAGA 60.768 55.000 10.89 0.00 44.30 2.87
4991 5899 0.110486 GTGCCCAGGGACTTGAAGAA 59.890 55.000 10.89 0.00 34.60 2.52
4992 5900 0.401738 TGCCCAGGGACTTGAAGAAG 59.598 55.000 10.89 0.00 34.60 2.85
4993 5901 0.693049 GCCCAGGGACTTGAAGAAGA 59.307 55.000 10.89 0.00 34.60 2.87
4994 5902 1.283321 GCCCAGGGACTTGAAGAAGAT 59.717 52.381 10.89 0.00 34.60 2.40
4995 5903 2.291217 GCCCAGGGACTTGAAGAAGATT 60.291 50.000 10.89 0.00 34.60 2.40
4996 5904 3.615155 CCCAGGGACTTGAAGAAGATTC 58.385 50.000 0.00 0.00 34.60 2.52
4997 5905 3.615155 CCAGGGACTTGAAGAAGATTCC 58.385 50.000 0.00 0.00 34.60 3.01
4998 5906 3.265479 CCAGGGACTTGAAGAAGATTCCT 59.735 47.826 0.00 0.00 34.60 3.36
4999 5907 4.263683 CCAGGGACTTGAAGAAGATTCCTT 60.264 45.833 0.00 0.00 34.60 3.36
5000 5908 4.699257 CAGGGACTTGAAGAAGATTCCTTG 59.301 45.833 0.00 0.00 34.60 3.61
5001 5909 4.599241 AGGGACTTGAAGAAGATTCCTTGA 59.401 41.667 0.00 0.00 27.25 3.02
5002 5910 4.697828 GGGACTTGAAGAAGATTCCTTGAC 59.302 45.833 0.00 0.00 32.98 3.18
5003 5911 4.390297 GGACTTGAAGAAGATTCCTTGACG 59.610 45.833 0.00 0.00 32.98 4.35
5004 5912 3.748568 ACTTGAAGAAGATTCCTTGACGC 59.251 43.478 0.00 0.00 32.98 5.19
5005 5913 2.699954 TGAAGAAGATTCCTTGACGCC 58.300 47.619 0.00 0.00 31.62 5.68
5006 5914 1.661112 GAAGAAGATTCCTTGACGCCG 59.339 52.381 0.00 0.00 31.62 6.46
5007 5915 0.741221 AGAAGATTCCTTGACGCCGC 60.741 55.000 0.00 0.00 31.62 6.53
5008 5916 0.741221 GAAGATTCCTTGACGCCGCT 60.741 55.000 0.00 0.00 31.62 5.52
5009 5917 1.021390 AAGATTCCTTGACGCCGCTG 61.021 55.000 0.00 0.00 0.00 5.18
5010 5918 3.100862 GATTCCTTGACGCCGCTGC 62.101 63.158 0.00 0.00 0.00 5.25
5020 5928 4.154347 GCCGCTGCCTGAGCTAGT 62.154 66.667 0.00 0.00 46.64 2.57
5021 5929 2.202851 CCGCTGCCTGAGCTAGTG 60.203 66.667 0.00 0.00 46.64 2.74
5022 5930 2.575993 CGCTGCCTGAGCTAGTGT 59.424 61.111 0.00 0.00 46.64 3.55
5023 5931 1.518133 CGCTGCCTGAGCTAGTGTC 60.518 63.158 0.00 0.00 46.64 3.67
5024 5932 1.593787 GCTGCCTGAGCTAGTGTCA 59.406 57.895 0.00 0.00 45.21 3.58
5025 5933 0.459934 GCTGCCTGAGCTAGTGTCAG 60.460 60.000 14.27 14.27 45.21 3.51
5026 5934 1.180907 CTGCCTGAGCTAGTGTCAGA 58.819 55.000 20.09 5.92 43.65 3.27
5027 5935 1.755959 CTGCCTGAGCTAGTGTCAGAT 59.244 52.381 20.09 0.00 43.65 2.90
5028 5936 2.168106 CTGCCTGAGCTAGTGTCAGATT 59.832 50.000 20.09 0.00 43.65 2.40
5029 5937 2.093816 TGCCTGAGCTAGTGTCAGATTG 60.094 50.000 20.09 9.08 43.65 2.67
5030 5938 2.093764 GCCTGAGCTAGTGTCAGATTGT 60.094 50.000 20.09 0.00 43.65 2.71
5031 5939 3.779759 CCTGAGCTAGTGTCAGATTGTC 58.220 50.000 20.09 0.00 43.65 3.18
5032 5940 3.430098 CCTGAGCTAGTGTCAGATTGTCC 60.430 52.174 20.09 0.00 43.65 4.02
5033 5941 3.165071 TGAGCTAGTGTCAGATTGTCCA 58.835 45.455 0.00 0.00 0.00 4.02
5034 5942 3.056536 TGAGCTAGTGTCAGATTGTCCAC 60.057 47.826 0.00 0.00 0.00 4.02
5035 5943 3.169099 AGCTAGTGTCAGATTGTCCACT 58.831 45.455 0.00 0.00 40.92 4.00
5036 5944 4.344978 AGCTAGTGTCAGATTGTCCACTA 58.655 43.478 0.00 0.00 38.91 2.74
5037 5945 4.772624 AGCTAGTGTCAGATTGTCCACTAA 59.227 41.667 0.00 0.00 39.26 2.24
5038 5946 5.105554 AGCTAGTGTCAGATTGTCCACTAAG 60.106 44.000 0.00 0.00 39.26 2.18
5039 5947 5.105716 GCTAGTGTCAGATTGTCCACTAAGA 60.106 44.000 0.00 0.00 39.26 2.10
5040 5948 5.808366 AGTGTCAGATTGTCCACTAAGAA 57.192 39.130 0.00 0.00 36.44 2.52
5041 5949 6.174720 AGTGTCAGATTGTCCACTAAGAAA 57.825 37.500 0.00 0.00 36.44 2.52
5042 5950 6.226787 AGTGTCAGATTGTCCACTAAGAAAG 58.773 40.000 0.00 0.00 36.44 2.62
5043 5951 5.992217 GTGTCAGATTGTCCACTAAGAAAGT 59.008 40.000 0.00 0.00 39.81 2.66
5044 5952 7.015292 AGTGTCAGATTGTCCACTAAGAAAGTA 59.985 37.037 0.00 0.00 35.76 2.24
5045 5953 7.656137 GTGTCAGATTGTCCACTAAGAAAGTAA 59.344 37.037 0.00 0.00 35.76 2.24
5046 5954 7.656137 TGTCAGATTGTCCACTAAGAAAGTAAC 59.344 37.037 0.00 0.00 35.76 2.50
5047 5955 7.873505 GTCAGATTGTCCACTAAGAAAGTAACT 59.126 37.037 0.00 0.00 35.76 2.24
5048 5956 8.088981 TCAGATTGTCCACTAAGAAAGTAACTC 58.911 37.037 0.00 0.00 35.76 3.01
5049 5957 7.332182 CAGATTGTCCACTAAGAAAGTAACTCC 59.668 40.741 0.00 0.00 35.76 3.85
5050 5958 5.130292 TGTCCACTAAGAAAGTAACTCCG 57.870 43.478 0.00 0.00 35.76 4.63
5051 5959 3.925299 GTCCACTAAGAAAGTAACTCCGC 59.075 47.826 0.00 0.00 35.76 5.54
5052 5960 3.830755 TCCACTAAGAAAGTAACTCCGCT 59.169 43.478 0.00 0.00 35.76 5.52
5053 5961 3.927142 CCACTAAGAAAGTAACTCCGCTG 59.073 47.826 0.00 0.00 35.76 5.18
5054 5962 3.368236 CACTAAGAAAGTAACTCCGCTGC 59.632 47.826 0.00 0.00 35.76 5.25
5055 5963 2.841442 AAGAAAGTAACTCCGCTGCT 57.159 45.000 0.00 0.00 0.00 4.24
5056 5964 3.955650 AAGAAAGTAACTCCGCTGCTA 57.044 42.857 0.00 0.00 0.00 3.49
5057 5965 3.512033 AGAAAGTAACTCCGCTGCTAG 57.488 47.619 0.00 0.00 0.00 3.42
5058 5966 2.826725 AGAAAGTAACTCCGCTGCTAGT 59.173 45.455 0.00 0.00 0.00 2.57
5059 5967 2.656560 AAGTAACTCCGCTGCTAGTG 57.343 50.000 5.45 0.00 0.00 2.74
5060 5968 1.835494 AGTAACTCCGCTGCTAGTGA 58.165 50.000 5.45 0.00 0.00 3.41
5061 5969 2.379972 AGTAACTCCGCTGCTAGTGAT 58.620 47.619 5.45 0.00 0.00 3.06
5062 5970 3.552875 AGTAACTCCGCTGCTAGTGATA 58.447 45.455 5.45 0.00 0.00 2.15
5063 5971 4.145807 AGTAACTCCGCTGCTAGTGATAT 58.854 43.478 5.45 0.00 0.00 1.63
5064 5972 3.377346 AACTCCGCTGCTAGTGATATG 57.623 47.619 5.45 0.00 0.00 1.78
5065 5973 1.615883 ACTCCGCTGCTAGTGATATGG 59.384 52.381 0.00 0.00 0.00 2.74
5066 5974 1.615883 CTCCGCTGCTAGTGATATGGT 59.384 52.381 0.00 0.00 0.00 3.55
5067 5975 2.820197 CTCCGCTGCTAGTGATATGGTA 59.180 50.000 0.00 0.00 0.00 3.25
5068 5976 3.227614 TCCGCTGCTAGTGATATGGTAA 58.772 45.455 0.00 0.00 0.00 2.85
5069 5977 3.255888 TCCGCTGCTAGTGATATGGTAAG 59.744 47.826 0.00 0.00 0.00 2.34
5070 5978 2.989840 CGCTGCTAGTGATATGGTAAGC 59.010 50.000 0.00 0.00 0.00 3.09
5071 5979 3.552890 CGCTGCTAGTGATATGGTAAGCA 60.553 47.826 0.00 0.00 37.62 3.91
5072 5980 4.380531 GCTGCTAGTGATATGGTAAGCAA 58.619 43.478 0.00 0.00 39.29 3.91
5073 5981 4.999950 GCTGCTAGTGATATGGTAAGCAAT 59.000 41.667 0.00 0.00 39.29 3.56
5074 5982 5.471456 GCTGCTAGTGATATGGTAAGCAATT 59.529 40.000 0.00 0.00 39.29 2.32
5075 5983 6.016777 GCTGCTAGTGATATGGTAAGCAATTT 60.017 38.462 0.00 0.00 39.29 1.82
5076 5984 7.263100 TGCTAGTGATATGGTAAGCAATTTG 57.737 36.000 0.00 0.00 37.05 2.32
5077 5985 6.828273 TGCTAGTGATATGGTAAGCAATTTGT 59.172 34.615 0.00 0.00 37.05 2.83
5078 5986 7.134815 GCTAGTGATATGGTAAGCAATTTGTG 58.865 38.462 0.00 0.00 0.00 3.33
5086 5994 3.243128 GCAATTTGTGCGGCAACC 58.757 55.556 3.23 0.00 45.10 3.77
5087 5995 1.300853 GCAATTTGTGCGGCAACCT 60.301 52.632 3.23 0.00 45.10 3.50
5088 5996 1.559149 GCAATTTGTGCGGCAACCTG 61.559 55.000 3.23 0.00 45.10 4.00
5089 5997 0.249405 CAATTTGTGCGGCAACCTGT 60.249 50.000 3.23 0.00 36.72 4.00
5090 5998 1.000827 CAATTTGTGCGGCAACCTGTA 60.001 47.619 3.23 0.00 36.72 2.74
5091 5999 0.881118 ATTTGTGCGGCAACCTGTAG 59.119 50.000 3.23 0.00 36.72 2.74
5092 6000 0.179043 TTTGTGCGGCAACCTGTAGA 60.179 50.000 3.23 0.00 36.72 2.59
5093 6001 0.602638 TTGTGCGGCAACCTGTAGAG 60.603 55.000 3.23 0.00 31.07 2.43
5094 6002 2.047274 TGCGGCAACCTGTAGAGC 60.047 61.111 0.00 0.00 0.00 4.09
5095 6003 2.266055 GCGGCAACCTGTAGAGCT 59.734 61.111 0.00 0.00 0.00 4.09
5096 6004 2.103042 GCGGCAACCTGTAGAGCTG 61.103 63.158 0.00 0.00 36.47 4.24
5097 6005 1.293498 CGGCAACCTGTAGAGCTGT 59.707 57.895 0.00 0.00 0.00 4.40
5098 6006 0.530744 CGGCAACCTGTAGAGCTGTA 59.469 55.000 0.00 0.00 0.00 2.74
5099 6007 1.469940 CGGCAACCTGTAGAGCTGTAG 60.470 57.143 0.00 0.00 0.00 2.74
5100 6008 1.646189 GCAACCTGTAGAGCTGTAGC 58.354 55.000 0.00 0.00 42.49 3.58
5101 6009 1.740718 GCAACCTGTAGAGCTGTAGCC 60.741 57.143 0.00 0.00 43.38 3.93
5102 6010 1.827969 CAACCTGTAGAGCTGTAGCCT 59.172 52.381 0.00 0.64 43.38 4.58
5103 6011 1.770294 ACCTGTAGAGCTGTAGCCTC 58.230 55.000 0.00 0.00 43.38 4.70
5104 6012 1.286553 ACCTGTAGAGCTGTAGCCTCT 59.713 52.381 0.00 5.81 43.38 3.69
5105 6013 1.680735 CCTGTAGAGCTGTAGCCTCTG 59.319 57.143 0.00 0.00 43.38 3.35
5106 6014 1.066908 CTGTAGAGCTGTAGCCTCTGC 59.933 57.143 0.00 12.12 43.38 4.26
5107 6015 0.387565 GTAGAGCTGTAGCCTCTGCC 59.612 60.000 0.00 4.07 43.38 4.85
5108 6016 0.260230 TAGAGCTGTAGCCTCTGCCT 59.740 55.000 0.00 3.10 43.38 4.75
5109 6017 1.143620 GAGCTGTAGCCTCTGCCTG 59.856 63.158 0.00 0.00 43.38 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.930722 GGATGTCCAACAAGTTTTTCATCAAT 59.069 34.615 15.76 0.00 34.17 2.57
224 225 1.614413 GGACACAGATACGGGAGATCC 59.386 57.143 0.00 0.00 0.00 3.36
227 228 1.381928 GCGGACACAGATACGGGAGA 61.382 60.000 0.00 0.00 0.00 3.71
259 260 2.509336 CCGCATCTGTCCGTGGAC 60.509 66.667 12.17 12.17 44.77 4.02
260 261 3.770040 CCCGCATCTGTCCGTGGA 61.770 66.667 0.00 0.00 34.58 4.02
261 262 3.309436 TTCCCGCATCTGTCCGTGG 62.309 63.158 0.00 0.00 0.00 4.94
262 263 2.100631 GTTCCCGCATCTGTCCGTG 61.101 63.158 0.00 0.00 0.00 4.94
263 264 2.264794 GTTCCCGCATCTGTCCGT 59.735 61.111 0.00 0.00 0.00 4.69
302 697 2.045536 GGCCAGCTCTGTCTTGGG 60.046 66.667 0.00 0.00 0.00 4.12
317 712 2.203015 TAATTCTGCGCGGGAGGC 60.203 61.111 17.88 0.00 38.69 4.70
712 1108 8.248945 TGTGGTGAAAAGGTTAAAACGATAAAA 58.751 29.630 0.00 0.00 0.00 1.52
717 1113 5.640189 TTGTGGTGAAAAGGTTAAAACGA 57.360 34.783 0.00 0.00 0.00 3.85
718 1114 6.707599 TTTTGTGGTGAAAAGGTTAAAACG 57.292 33.333 0.00 0.00 0.00 3.60
719 1115 8.722394 TCAATTTTGTGGTGAAAAGGTTAAAAC 58.278 29.630 0.00 0.00 0.00 2.43
720 1116 8.848474 TCAATTTTGTGGTGAAAAGGTTAAAA 57.152 26.923 0.00 0.00 0.00 1.52
721 1117 9.103861 GATCAATTTTGTGGTGAAAAGGTTAAA 57.896 29.630 0.00 0.00 0.00 1.52
722 1118 8.482128 AGATCAATTTTGTGGTGAAAAGGTTAA 58.518 29.630 0.00 0.00 0.00 2.01
723 1119 8.017418 AGATCAATTTTGTGGTGAAAAGGTTA 57.983 30.769 0.00 0.00 0.00 2.85
724 1120 6.888105 AGATCAATTTTGTGGTGAAAAGGTT 58.112 32.000 0.00 0.00 0.00 3.50
725 1121 6.484364 AGATCAATTTTGTGGTGAAAAGGT 57.516 33.333 0.00 0.00 0.00 3.50
726 1122 7.790823 AAAGATCAATTTTGTGGTGAAAAGG 57.209 32.000 0.00 0.00 0.00 3.11
736 1132 5.804639 GGGGGCTTAAAAGATCAATTTTGT 58.195 37.500 0.00 0.00 34.35 2.83
884 1701 1.487976 TGCCAAAAGCCCAAAACATGA 59.512 42.857 0.00 0.00 42.71 3.07
1050 1883 0.317160 AAACAGCCGTCACGATGAGA 59.683 50.000 0.00 0.00 0.00 3.27
1102 1935 1.770658 CTCCATCTCCTTGCCATGGTA 59.229 52.381 14.67 5.86 38.62 3.25
1353 2186 2.664402 ATGACTTGGAACAGCACCTT 57.336 45.000 0.00 0.00 42.39 3.50
1882 2715 8.593945 TTAAGGCAGGATTAAAGAATGAACAT 57.406 30.769 0.00 0.00 0.00 2.71
2026 2859 2.355197 CACATAATCAACAGCCCACGA 58.645 47.619 0.00 0.00 0.00 4.35
2027 2860 1.202177 GCACATAATCAACAGCCCACG 60.202 52.381 0.00 0.00 0.00 4.94
2396 3238 2.852281 GCTGGTTTTCCCCCTCCCA 61.852 63.158 0.00 0.00 39.73 4.37
2521 3363 1.648681 GAAACGTGCGGCATTTCATTC 59.351 47.619 19.08 10.93 33.44 2.67
2525 3367 0.984109 CATGAAACGTGCGGCATTTC 59.016 50.000 17.79 17.79 33.75 2.17
2582 3426 1.788258 ATATCTTGTCCGCTGCATCG 58.212 50.000 2.26 2.26 0.00 3.84
2776 3627 1.005097 TGGCAGCAGAATCCACTGATT 59.995 47.619 4.53 0.00 43.91 2.57
3051 3923 2.685380 CTCGAACCTGAGGCCCCT 60.685 66.667 0.00 0.00 32.18 4.79
3103 3981 4.023193 ACTTCCTTGTTCGATCGCATTTTT 60.023 37.500 11.09 0.00 0.00 1.94
3104 3982 3.502211 ACTTCCTTGTTCGATCGCATTTT 59.498 39.130 11.09 0.00 0.00 1.82
3130 4008 3.131933 ACAGGTGTATTTTTGCAACAGCA 59.868 39.130 17.26 3.09 42.55 4.41
3379 4261 8.587952 TTTTTAGGCTGCAAAAATTCTTAGAC 57.412 30.769 11.35 0.00 31.65 2.59
3699 4581 4.677584 GCAAACCATACATATTTTCGCCA 58.322 39.130 0.00 0.00 0.00 5.69
3782 4664 3.086600 AGTAGAGCAGGCTGGGGC 61.087 66.667 17.64 1.20 37.82 5.80
3897 4779 8.910944 ACCATTACTTCGCTACTTAAGAATAGA 58.089 33.333 10.09 0.63 0.00 1.98
3919 4801 3.276857 CATTGCTCAAGCTGACTACCAT 58.723 45.455 3.32 0.00 42.66 3.55
4100 4987 5.425630 CATGTTGGATCATCTCAGACTTCA 58.574 41.667 0.00 0.00 0.00 3.02
4321 5209 5.105351 TCACCATTCGAGCAAGAGAGAATAA 60.105 40.000 0.00 0.00 32.70 1.40
4617 5507 4.690122 GGCCGTGTATACTGTGATTAACT 58.310 43.478 4.17 0.00 0.00 2.24
4629 5519 1.516892 GGTTGACCGGCCGTGTATA 59.483 57.895 26.12 11.16 0.00 1.47
4678 5586 1.818674 GGCTTGATCCAATTCCAACGT 59.181 47.619 0.00 0.00 0.00 3.99
4710 5618 0.457851 CGCCACCACTTGTCCAAAAA 59.542 50.000 0.00 0.00 0.00 1.94
4711 5619 2.010582 GCGCCACCACTTGTCCAAAA 62.011 55.000 0.00 0.00 0.00 2.44
4712 5620 2.485795 GCGCCACCACTTGTCCAAA 61.486 57.895 0.00 0.00 0.00 3.28
4713 5621 2.904866 GCGCCACCACTTGTCCAA 60.905 61.111 0.00 0.00 0.00 3.53
4714 5622 4.947147 GGCGCCACCACTTGTCCA 62.947 66.667 24.80 0.00 38.86 4.02
4715 5623 4.947147 TGGCGCCACCACTTGTCC 62.947 66.667 29.03 0.00 46.36 4.02
4716 5624 3.357079 CTGGCGCCACCACTTGTC 61.357 66.667 29.03 0.00 46.36 3.18
4719 5627 4.892965 TTGCTGGCGCCACCACTT 62.893 61.111 29.03 0.00 46.36 3.16
4724 5632 2.639327 AAATCCTTGCTGGCGCCAC 61.639 57.895 29.03 22.57 35.26 5.01
4725 5633 2.283101 AAATCCTTGCTGGCGCCA 60.283 55.556 30.59 30.59 35.26 5.69
4726 5634 2.182537 CAAATCCTTGCTGGCGCC 59.817 61.111 22.73 22.73 35.26 6.53
4727 5635 2.182537 CCAAATCCTTGCTGGCGC 59.817 61.111 0.00 0.00 35.26 6.53
4728 5636 2.182537 GCCAAATCCTTGCTGGCG 59.817 61.111 0.00 0.00 45.72 5.69
4730 5638 0.529378 GACTGCCAAATCCTTGCTGG 59.471 55.000 0.00 0.00 37.10 4.85
4731 5639 0.529378 GGACTGCCAAATCCTTGCTG 59.471 55.000 0.00 0.00 31.75 4.41
4732 5640 0.407139 AGGACTGCCAAATCCTTGCT 59.593 50.000 0.00 0.00 43.09 3.91
4733 5641 2.967270 AGGACTGCCAAATCCTTGC 58.033 52.632 0.00 0.00 43.09 4.01
4737 5645 7.502561 ACTTATGTATTAAGGACTGCCAAATCC 59.497 37.037 0.00 0.00 41.46 3.01
4738 5646 8.451908 ACTTATGTATTAAGGACTGCCAAATC 57.548 34.615 0.00 0.00 41.46 2.17
4739 5647 8.823220 AACTTATGTATTAAGGACTGCCAAAT 57.177 30.769 0.00 0.00 41.46 2.32
4740 5648 9.169592 GTAACTTATGTATTAAGGACTGCCAAA 57.830 33.333 0.00 0.00 41.46 3.28
4741 5649 7.771826 GGTAACTTATGTATTAAGGACTGCCAA 59.228 37.037 0.00 0.00 41.46 4.52
4742 5650 7.277396 GGTAACTTATGTATTAAGGACTGCCA 58.723 38.462 0.00 0.00 41.46 4.92
4743 5651 7.725818 GGTAACTTATGTATTAAGGACTGCC 57.274 40.000 0.00 0.00 41.46 4.85
4753 5661 8.893727 CTTGCAAAGCTAGGTAACTTATGTATT 58.106 33.333 0.00 0.00 40.97 1.89
4754 5662 8.438676 CTTGCAAAGCTAGGTAACTTATGTAT 57.561 34.615 0.00 0.00 40.97 2.29
4755 5663 7.843490 CTTGCAAAGCTAGGTAACTTATGTA 57.157 36.000 0.00 0.00 40.97 2.29
4756 5664 6.743575 CTTGCAAAGCTAGGTAACTTATGT 57.256 37.500 0.00 0.00 40.97 2.29
4772 5680 1.202592 TCACTGTCCTACGCTTGCAAA 60.203 47.619 0.00 0.00 0.00 3.68
4773 5681 0.391228 TCACTGTCCTACGCTTGCAA 59.609 50.000 0.00 0.00 0.00 4.08
4774 5682 0.319555 GTCACTGTCCTACGCTTGCA 60.320 55.000 0.00 0.00 0.00 4.08
4775 5683 1.014564 GGTCACTGTCCTACGCTTGC 61.015 60.000 0.00 0.00 0.00 4.01
4776 5684 0.603569 AGGTCACTGTCCTACGCTTG 59.396 55.000 0.00 0.00 33.04 4.01
4777 5685 0.889306 GAGGTCACTGTCCTACGCTT 59.111 55.000 0.00 0.00 35.20 4.68
4778 5686 0.966370 GGAGGTCACTGTCCTACGCT 60.966 60.000 0.00 0.00 35.20 5.07
4779 5687 0.966370 AGGAGGTCACTGTCCTACGC 60.966 60.000 0.00 0.00 41.70 4.42
4780 5688 2.414994 TAGGAGGTCACTGTCCTACG 57.585 55.000 3.06 0.00 41.70 3.51
4782 5690 3.011369 ACATGTAGGAGGTCACTGTCCTA 59.989 47.826 0.00 3.06 41.70 2.94
4783 5691 2.225394 ACATGTAGGAGGTCACTGTCCT 60.225 50.000 0.00 4.81 45.60 3.85
4784 5692 2.180276 ACATGTAGGAGGTCACTGTCC 58.820 52.381 0.00 0.00 0.00 4.02
4785 5693 3.511934 AGAACATGTAGGAGGTCACTGTC 59.488 47.826 0.00 0.00 0.00 3.51
4786 5694 3.511477 AGAACATGTAGGAGGTCACTGT 58.489 45.455 0.00 0.00 0.00 3.55
4787 5695 4.707448 AGTAGAACATGTAGGAGGTCACTG 59.293 45.833 0.00 0.00 0.00 3.66
4788 5696 4.936802 AGTAGAACATGTAGGAGGTCACT 58.063 43.478 0.00 0.00 0.00 3.41
4789 5697 5.662674 AAGTAGAACATGTAGGAGGTCAC 57.337 43.478 0.00 0.00 0.00 3.67
4790 5698 6.722590 TGTAAAGTAGAACATGTAGGAGGTCA 59.277 38.462 0.00 0.00 0.00 4.02
4791 5699 7.166691 TGTAAAGTAGAACATGTAGGAGGTC 57.833 40.000 0.00 0.00 0.00 3.85
4792 5700 7.015877 TGTTGTAAAGTAGAACATGTAGGAGGT 59.984 37.037 0.00 0.00 37.08 3.85
4793 5701 7.383687 TGTTGTAAAGTAGAACATGTAGGAGG 58.616 38.462 0.00 0.00 37.08 4.30
4794 5702 8.827177 TTGTTGTAAAGTAGAACATGTAGGAG 57.173 34.615 0.00 0.00 40.90 3.69
4795 5703 9.048446 GTTTGTTGTAAAGTAGAACATGTAGGA 57.952 33.333 0.00 0.00 40.90 2.94
4796 5704 8.832521 TGTTTGTTGTAAAGTAGAACATGTAGG 58.167 33.333 0.00 0.00 40.90 3.18
4811 5719 9.039870 CCTGAGCAATAAATTTGTTTGTTGTAA 57.960 29.630 0.00 0.11 36.05 2.41
4812 5720 7.655328 CCCTGAGCAATAAATTTGTTTGTTGTA 59.345 33.333 0.00 0.00 36.05 2.41
4813 5721 6.482973 CCCTGAGCAATAAATTTGTTTGTTGT 59.517 34.615 0.00 0.00 36.05 3.32
4814 5722 6.073112 CCCCTGAGCAATAAATTTGTTTGTTG 60.073 38.462 0.00 6.16 36.51 3.33
4815 5723 5.997129 CCCCTGAGCAATAAATTTGTTTGTT 59.003 36.000 0.00 3.10 0.00 2.83
4816 5724 5.306678 TCCCCTGAGCAATAAATTTGTTTGT 59.693 36.000 0.00 0.00 0.00 2.83
4817 5725 5.792741 TCCCCTGAGCAATAAATTTGTTTG 58.207 37.500 0.00 6.18 0.00 2.93
4818 5726 6.213195 TCATCCCCTGAGCAATAAATTTGTTT 59.787 34.615 0.00 0.00 0.00 2.83
4819 5727 5.721000 TCATCCCCTGAGCAATAAATTTGTT 59.279 36.000 0.00 0.00 0.00 2.83
4820 5728 5.271598 TCATCCCCTGAGCAATAAATTTGT 58.728 37.500 0.00 0.00 0.00 2.83
4821 5729 5.857471 TCATCCCCTGAGCAATAAATTTG 57.143 39.130 0.00 0.00 0.00 2.32
4822 5730 5.541484 GGATCATCCCCTGAGCAATAAATTT 59.459 40.000 0.00 0.00 42.21 1.82
4823 5731 5.082425 GGATCATCCCCTGAGCAATAAATT 58.918 41.667 0.00 0.00 42.21 1.82
4824 5732 4.356190 AGGATCATCCCCTGAGCAATAAAT 59.644 41.667 0.00 0.00 42.21 1.40
4825 5733 3.723681 AGGATCATCCCCTGAGCAATAAA 59.276 43.478 0.00 0.00 42.21 1.40
4826 5734 3.328931 GAGGATCATCCCCTGAGCAATAA 59.671 47.826 0.00 0.00 42.21 1.40
4827 5735 2.909006 GAGGATCATCCCCTGAGCAATA 59.091 50.000 0.00 0.00 42.21 1.90
4828 5736 1.704070 GAGGATCATCCCCTGAGCAAT 59.296 52.381 0.00 0.00 42.21 3.56
4829 5737 1.135094 GAGGATCATCCCCTGAGCAA 58.865 55.000 0.00 0.00 42.21 3.91
4830 5738 0.267054 AGAGGATCATCCCCTGAGCA 59.733 55.000 3.23 0.00 42.21 4.26
4831 5739 1.433121 AAGAGGATCATCCCCTGAGC 58.567 55.000 3.23 0.00 39.63 4.26
4832 5740 2.776536 ACAAAGAGGATCATCCCCTGAG 59.223 50.000 3.23 0.00 37.19 3.35
4833 5741 2.850833 ACAAAGAGGATCATCCCCTGA 58.149 47.619 3.23 0.00 37.19 3.86
4834 5742 3.072184 CCTACAAAGAGGATCATCCCCTG 59.928 52.174 3.23 1.81 39.15 4.45
4835 5743 3.051032 TCCTACAAAGAGGATCATCCCCT 60.051 47.826 3.23 0.00 40.89 4.79
4836 5744 3.318313 TCCTACAAAGAGGATCATCCCC 58.682 50.000 3.23 0.00 40.89 4.81
4837 5745 5.373812 TTTCCTACAAAGAGGATCATCCC 57.626 43.478 3.23 0.00 45.25 3.85
4838 5746 6.183360 GCTTTTTCCTACAAAGAGGATCATCC 60.183 42.308 3.23 0.00 45.25 3.51
4839 5747 6.601217 AGCTTTTTCCTACAAAGAGGATCATC 59.399 38.462 0.00 0.00 45.25 2.92
4840 5748 6.376581 CAGCTTTTTCCTACAAAGAGGATCAT 59.623 38.462 0.00 0.00 45.25 2.45
4841 5749 5.707298 CAGCTTTTTCCTACAAAGAGGATCA 59.293 40.000 0.00 0.00 45.25 2.92
4842 5750 5.392487 GCAGCTTTTTCCTACAAAGAGGATC 60.392 44.000 0.00 0.00 45.25 3.36
4843 5751 4.460731 GCAGCTTTTTCCTACAAAGAGGAT 59.539 41.667 0.00 0.00 45.25 3.24
4844 5752 3.821033 GCAGCTTTTTCCTACAAAGAGGA 59.179 43.478 0.00 0.00 44.22 3.71
4845 5753 3.569701 TGCAGCTTTTTCCTACAAAGAGG 59.430 43.478 0.00 0.00 38.03 3.69
4846 5754 4.036734 TGTGCAGCTTTTTCCTACAAAGAG 59.963 41.667 0.00 0.00 33.69 2.85
4847 5755 3.951037 TGTGCAGCTTTTTCCTACAAAGA 59.049 39.130 0.00 0.00 33.69 2.52
4848 5756 4.305989 TGTGCAGCTTTTTCCTACAAAG 57.694 40.909 0.00 0.00 34.80 2.77
4849 5757 4.727507 TTGTGCAGCTTTTTCCTACAAA 57.272 36.364 0.00 0.00 0.00 2.83
4850 5758 4.935352 ATTGTGCAGCTTTTTCCTACAA 57.065 36.364 0.00 0.00 0.00 2.41
4851 5759 4.099266 ACAATTGTGCAGCTTTTTCCTACA 59.901 37.500 11.07 0.00 0.00 2.74
4852 5760 4.445385 CACAATTGTGCAGCTTTTTCCTAC 59.555 41.667 24.69 0.00 39.39 3.18
4853 5761 4.340666 TCACAATTGTGCAGCTTTTTCCTA 59.659 37.500 29.84 8.47 45.25 2.94
4854 5762 3.132646 TCACAATTGTGCAGCTTTTTCCT 59.867 39.130 29.84 0.00 45.25 3.36
4855 5763 3.456280 TCACAATTGTGCAGCTTTTTCC 58.544 40.909 29.84 0.00 45.25 3.13
4856 5764 3.060070 GCTCACAATTGTGCAGCTTTTTC 60.060 43.478 32.79 17.38 45.25 2.29
4857 5765 2.867975 GCTCACAATTGTGCAGCTTTTT 59.132 40.909 32.79 4.48 45.25 1.94
4858 5766 2.101917 AGCTCACAATTGTGCAGCTTTT 59.898 40.909 34.92 24.37 46.77 2.27
4859 5767 1.684983 AGCTCACAATTGTGCAGCTTT 59.315 42.857 34.92 24.82 46.77 3.51
4860 5768 1.325355 AGCTCACAATTGTGCAGCTT 58.675 45.000 34.92 26.20 46.77 3.74
4861 5769 3.031916 AGCTCACAATTGTGCAGCT 57.968 47.368 34.92 34.92 45.52 4.24
4862 5770 2.144482 AAAGCTCACAATTGTGCAGC 57.856 45.000 32.93 32.93 45.25 5.25
4863 5771 4.609947 TGTAAAAGCTCACAATTGTGCAG 58.390 39.130 29.84 25.79 45.25 4.41
4864 5772 4.645762 TGTAAAAGCTCACAATTGTGCA 57.354 36.364 29.84 17.80 45.25 4.57
4865 5773 7.382218 ACTTAATGTAAAAGCTCACAATTGTGC 59.618 33.333 29.84 20.81 45.25 4.57
4866 5774 8.801715 ACTTAATGTAAAAGCTCACAATTGTG 57.198 30.769 29.01 29.01 46.91 3.33
4867 5775 9.816354 AAACTTAATGTAAAAGCTCACAATTGT 57.184 25.926 4.92 4.92 0.00 2.71
4869 5777 9.476202 GGAAACTTAATGTAAAAGCTCACAATT 57.524 29.630 0.00 0.00 0.00 2.32
4870 5778 8.860088 AGGAAACTTAATGTAAAAGCTCACAAT 58.140 29.630 0.00 0.00 37.44 2.71
4871 5779 8.232913 AGGAAACTTAATGTAAAAGCTCACAA 57.767 30.769 0.00 0.00 37.44 3.33
4872 5780 7.817418 AGGAAACTTAATGTAAAAGCTCACA 57.183 32.000 0.00 0.00 37.44 3.58
4873 5781 8.451748 CCTAGGAAACTTAATGTAAAAGCTCAC 58.548 37.037 1.05 0.00 43.67 3.51
4874 5782 8.380099 TCCTAGGAAACTTAATGTAAAAGCTCA 58.620 33.333 9.71 0.00 43.67 4.26
4875 5783 8.788325 TCCTAGGAAACTTAATGTAAAAGCTC 57.212 34.615 9.71 0.00 43.67 4.09
4876 5784 9.755122 ATTCCTAGGAAACTTAATGTAAAAGCT 57.245 29.630 27.65 2.42 43.67 3.74
4891 5799 9.125026 GCTCAGATTTTTCATATTCCTAGGAAA 57.875 33.333 27.65 16.77 36.23 3.13
4892 5800 8.497745 AGCTCAGATTTTTCATATTCCTAGGAA 58.502 33.333 26.24 26.24 38.59 3.36
4893 5801 8.038862 AGCTCAGATTTTTCATATTCCTAGGA 57.961 34.615 7.62 7.62 0.00 2.94
4894 5802 8.566260 CAAGCTCAGATTTTTCATATTCCTAGG 58.434 37.037 0.82 0.82 0.00 3.02
4895 5803 9.334947 TCAAGCTCAGATTTTTCATATTCCTAG 57.665 33.333 0.00 0.00 0.00 3.02
4896 5804 9.685276 TTCAAGCTCAGATTTTTCATATTCCTA 57.315 29.630 0.00 0.00 0.00 2.94
4897 5805 8.585471 TTCAAGCTCAGATTTTTCATATTCCT 57.415 30.769 0.00 0.00 0.00 3.36
4898 5806 9.245962 CATTCAAGCTCAGATTTTTCATATTCC 57.754 33.333 0.00 0.00 0.00 3.01
4899 5807 9.798994 ACATTCAAGCTCAGATTTTTCATATTC 57.201 29.630 0.00 0.00 0.00 1.75
4901 5809 9.798994 GAACATTCAAGCTCAGATTTTTCATAT 57.201 29.630 0.00 0.00 0.00 1.78
4902 5810 7.964559 CGAACATTCAAGCTCAGATTTTTCATA 59.035 33.333 0.00 0.00 0.00 2.15
4903 5811 6.805271 CGAACATTCAAGCTCAGATTTTTCAT 59.195 34.615 0.00 0.00 0.00 2.57
4904 5812 6.144854 CGAACATTCAAGCTCAGATTTTTCA 58.855 36.000 0.00 0.00 0.00 2.69
4905 5813 5.060200 GCGAACATTCAAGCTCAGATTTTTC 59.940 40.000 0.00 0.00 0.00 2.29
4906 5814 4.919754 GCGAACATTCAAGCTCAGATTTTT 59.080 37.500 0.00 0.00 0.00 1.94
4907 5815 4.217118 AGCGAACATTCAAGCTCAGATTTT 59.783 37.500 0.00 0.00 34.48 1.82
4908 5816 3.755378 AGCGAACATTCAAGCTCAGATTT 59.245 39.130 0.00 0.00 34.48 2.17
4909 5817 3.126514 CAGCGAACATTCAAGCTCAGATT 59.873 43.478 0.00 0.00 37.94 2.40
4910 5818 2.676839 CAGCGAACATTCAAGCTCAGAT 59.323 45.455 0.00 0.00 37.94 2.90
4911 5819 2.071540 CAGCGAACATTCAAGCTCAGA 58.928 47.619 0.00 0.00 37.94 3.27
4912 5820 1.802960 ACAGCGAACATTCAAGCTCAG 59.197 47.619 0.00 0.00 37.94 3.35
4913 5821 1.882912 ACAGCGAACATTCAAGCTCA 58.117 45.000 0.00 0.00 37.94 4.26
4914 5822 2.578495 CAACAGCGAACATTCAAGCTC 58.422 47.619 0.00 0.00 37.94 4.09
4915 5823 1.335324 GCAACAGCGAACATTCAAGCT 60.335 47.619 0.00 0.00 41.07 3.74
4916 5824 1.055338 GCAACAGCGAACATTCAAGC 58.945 50.000 0.00 0.00 0.00 4.01
4917 5825 2.046313 GTGCAACAGCGAACATTCAAG 58.954 47.619 0.00 0.00 36.32 3.02
4918 5826 1.268999 GGTGCAACAGCGAACATTCAA 60.269 47.619 0.00 0.00 39.98 2.69
4919 5827 0.310543 GGTGCAACAGCGAACATTCA 59.689 50.000 0.00 0.00 39.98 2.57
4920 5828 0.310543 TGGTGCAACAGCGAACATTC 59.689 50.000 0.00 0.00 39.98 2.67
4921 5829 0.743688 TTGGTGCAACAGCGAACATT 59.256 45.000 3.79 0.00 39.98 2.71
4922 5830 0.743688 TTTGGTGCAACAGCGAACAT 59.256 45.000 3.79 0.00 39.98 2.71
4923 5831 0.528017 TTTTGGTGCAACAGCGAACA 59.472 45.000 3.79 0.00 39.98 3.18
4924 5832 1.634702 TTTTTGGTGCAACAGCGAAC 58.365 45.000 3.79 0.00 39.98 3.95
4940 5848 3.960755 AGAAGCCACCTAGCAAACTTTTT 59.039 39.130 0.00 0.00 34.23 1.94
4941 5849 3.566351 AGAAGCCACCTAGCAAACTTTT 58.434 40.909 0.00 0.00 34.23 2.27
4942 5850 3.229697 AGAAGCCACCTAGCAAACTTT 57.770 42.857 0.00 0.00 34.23 2.66
4943 5851 2.959465 AGAAGCCACCTAGCAAACTT 57.041 45.000 0.00 0.00 34.23 2.66
4944 5852 4.576330 ATTAGAAGCCACCTAGCAAACT 57.424 40.909 0.00 0.00 34.23 2.66
4945 5853 5.402398 CAAATTAGAAGCCACCTAGCAAAC 58.598 41.667 0.00 0.00 34.23 2.93
4946 5854 4.082245 GCAAATTAGAAGCCACCTAGCAAA 60.082 41.667 0.00 0.00 34.23 3.68
4947 5855 3.443681 GCAAATTAGAAGCCACCTAGCAA 59.556 43.478 0.00 0.00 34.23 3.91
4948 5856 3.016736 GCAAATTAGAAGCCACCTAGCA 58.983 45.455 0.00 0.00 34.23 3.49
4949 5857 3.699779 GCAAATTAGAAGCCACCTAGC 57.300 47.619 0.00 0.00 0.00 3.42
4957 5865 1.134995 GGGCACTGGCAAATTAGAAGC 60.135 52.381 4.78 0.00 43.71 3.86
4958 5866 2.165030 CTGGGCACTGGCAAATTAGAAG 59.835 50.000 4.78 0.00 43.71 2.85
4959 5867 2.170166 CTGGGCACTGGCAAATTAGAA 58.830 47.619 4.78 0.00 43.71 2.10
4960 5868 1.616725 CCTGGGCACTGGCAAATTAGA 60.617 52.381 0.00 0.00 43.71 2.10
4961 5869 0.819582 CCTGGGCACTGGCAAATTAG 59.180 55.000 0.00 0.00 43.71 1.73
4962 5870 0.614415 CCCTGGGCACTGGCAAATTA 60.614 55.000 6.31 0.00 43.71 1.40
4963 5871 1.914764 CCCTGGGCACTGGCAAATT 60.915 57.895 6.31 0.00 43.71 1.82
4964 5872 2.284112 CCCTGGGCACTGGCAAAT 60.284 61.111 6.31 0.00 43.71 2.32
4965 5873 3.506743 TCCCTGGGCACTGGCAAA 61.507 61.111 8.22 0.00 43.71 3.68
4966 5874 4.284550 GTCCCTGGGCACTGGCAA 62.285 66.667 8.22 0.00 43.71 4.52
4968 5876 3.971702 AAGTCCCTGGGCACTGGC 61.972 66.667 8.22 0.00 40.13 4.85
4969 5877 2.034687 CAAGTCCCTGGGCACTGG 59.965 66.667 8.22 4.57 35.61 4.00
4970 5878 0.607489 CTTCAAGTCCCTGGGCACTG 60.607 60.000 8.22 4.65 0.00 3.66
4971 5879 0.768221 TCTTCAAGTCCCTGGGCACT 60.768 55.000 8.22 9.83 0.00 4.40
4972 5880 0.110486 TTCTTCAAGTCCCTGGGCAC 59.890 55.000 8.22 7.52 0.00 5.01
4973 5881 0.401738 CTTCTTCAAGTCCCTGGGCA 59.598 55.000 8.22 0.00 0.00 5.36
4974 5882 0.693049 TCTTCTTCAAGTCCCTGGGC 59.307 55.000 8.22 3.19 0.00 5.36
4975 5883 3.615155 GAATCTTCTTCAAGTCCCTGGG 58.385 50.000 6.33 6.33 0.00 4.45
4976 5884 3.265479 AGGAATCTTCTTCAAGTCCCTGG 59.735 47.826 0.00 0.00 28.70 4.45
4977 5885 4.566426 AGGAATCTTCTTCAAGTCCCTG 57.434 45.455 0.00 0.00 28.70 4.45
4978 5886 4.599241 TCAAGGAATCTTCTTCAAGTCCCT 59.401 41.667 0.00 0.00 28.70 4.20
4979 5887 4.697828 GTCAAGGAATCTTCTTCAAGTCCC 59.302 45.833 0.00 0.00 28.70 4.46
4980 5888 4.390297 CGTCAAGGAATCTTCTTCAAGTCC 59.610 45.833 0.00 0.00 0.00 3.85
4981 5889 4.143009 GCGTCAAGGAATCTTCTTCAAGTC 60.143 45.833 0.00 0.00 0.00 3.01
4982 5890 3.748568 GCGTCAAGGAATCTTCTTCAAGT 59.251 43.478 0.00 0.00 0.00 3.16
4983 5891 3.126000 GGCGTCAAGGAATCTTCTTCAAG 59.874 47.826 0.00 0.00 0.00 3.02
4984 5892 3.074412 GGCGTCAAGGAATCTTCTTCAA 58.926 45.455 0.00 0.00 0.00 2.69
4985 5893 2.699954 GGCGTCAAGGAATCTTCTTCA 58.300 47.619 0.00 0.00 0.00 3.02
4986 5894 1.661112 CGGCGTCAAGGAATCTTCTTC 59.339 52.381 0.00 0.00 0.00 2.87
4987 5895 1.726853 CGGCGTCAAGGAATCTTCTT 58.273 50.000 0.00 0.00 0.00 2.52
4988 5896 0.741221 GCGGCGTCAAGGAATCTTCT 60.741 55.000 9.37 0.00 0.00 2.85
4989 5897 0.741221 AGCGGCGTCAAGGAATCTTC 60.741 55.000 9.37 0.00 0.00 2.87
4990 5898 1.021390 CAGCGGCGTCAAGGAATCTT 61.021 55.000 9.37 0.00 0.00 2.40
4991 5899 1.448540 CAGCGGCGTCAAGGAATCT 60.449 57.895 9.37 0.00 0.00 2.40
4992 5900 3.093278 CAGCGGCGTCAAGGAATC 58.907 61.111 9.37 0.00 0.00 2.52
4993 5901 3.127533 GCAGCGGCGTCAAGGAAT 61.128 61.111 9.37 0.00 0.00 3.01
5007 5915 1.180907 TCTGACACTAGCTCAGGCAG 58.819 55.000 14.98 9.02 41.70 4.85
5008 5916 1.857965 ATCTGACACTAGCTCAGGCA 58.142 50.000 14.98 0.00 41.70 4.75
5009 5917 2.093764 ACAATCTGACACTAGCTCAGGC 60.094 50.000 14.98 0.00 36.55 4.85
5010 5918 3.430098 GGACAATCTGACACTAGCTCAGG 60.430 52.174 14.98 5.25 36.55 3.86
5011 5919 3.194329 TGGACAATCTGACACTAGCTCAG 59.806 47.826 10.55 10.55 37.14 3.35
5012 5920 3.056536 GTGGACAATCTGACACTAGCTCA 60.057 47.826 0.00 0.00 0.00 4.26
5013 5921 3.194542 AGTGGACAATCTGACACTAGCTC 59.805 47.826 0.00 0.00 37.36 4.09
5014 5922 3.169099 AGTGGACAATCTGACACTAGCT 58.831 45.455 0.00 0.00 37.36 3.32
5015 5923 3.601443 AGTGGACAATCTGACACTAGC 57.399 47.619 0.00 0.00 37.36 3.42
5016 5924 6.516739 TCTTAGTGGACAATCTGACACTAG 57.483 41.667 0.00 0.00 39.93 2.57
5017 5925 6.911250 TTCTTAGTGGACAATCTGACACTA 57.089 37.500 0.00 0.00 38.89 2.74
5018 5926 5.808366 TTCTTAGTGGACAATCTGACACT 57.192 39.130 0.00 0.00 40.24 3.55
5019 5927 5.992217 ACTTTCTTAGTGGACAATCTGACAC 59.008 40.000 0.00 0.00 35.19 3.67
5020 5928 6.174720 ACTTTCTTAGTGGACAATCTGACA 57.825 37.500 0.00 0.00 35.19 3.58
5021 5929 7.873505 AGTTACTTTCTTAGTGGACAATCTGAC 59.126 37.037 0.00 0.00 37.73 3.51
5022 5930 7.963532 AGTTACTTTCTTAGTGGACAATCTGA 58.036 34.615 0.00 0.00 37.73 3.27
5023 5931 7.332182 GGAGTTACTTTCTTAGTGGACAATCTG 59.668 40.741 0.00 0.00 37.73 2.90
5024 5932 7.387643 GGAGTTACTTTCTTAGTGGACAATCT 58.612 38.462 0.00 0.00 37.73 2.40
5025 5933 6.310711 CGGAGTTACTTTCTTAGTGGACAATC 59.689 42.308 0.00 0.00 37.73 2.67
5026 5934 6.164176 CGGAGTTACTTTCTTAGTGGACAAT 58.836 40.000 0.00 0.00 37.73 2.71
5027 5935 5.535333 CGGAGTTACTTTCTTAGTGGACAA 58.465 41.667 0.00 0.00 37.73 3.18
5028 5936 4.560108 GCGGAGTTACTTTCTTAGTGGACA 60.560 45.833 0.00 0.00 37.73 4.02
5029 5937 3.925299 GCGGAGTTACTTTCTTAGTGGAC 59.075 47.826 0.00 0.00 37.73 4.02
5030 5938 3.830755 AGCGGAGTTACTTTCTTAGTGGA 59.169 43.478 0.00 0.00 37.73 4.02
5031 5939 3.927142 CAGCGGAGTTACTTTCTTAGTGG 59.073 47.826 0.00 0.00 37.73 4.00
5032 5940 3.368236 GCAGCGGAGTTACTTTCTTAGTG 59.632 47.826 0.00 0.00 37.73 2.74
5033 5941 3.258622 AGCAGCGGAGTTACTTTCTTAGT 59.741 43.478 0.00 0.00 41.04 2.24
5034 5942 3.851098 AGCAGCGGAGTTACTTTCTTAG 58.149 45.455 0.00 0.00 0.00 2.18
5035 5943 3.955650 AGCAGCGGAGTTACTTTCTTA 57.044 42.857 0.00 0.00 0.00 2.10
5036 5944 2.841442 AGCAGCGGAGTTACTTTCTT 57.159 45.000 0.00 0.00 0.00 2.52
5037 5945 2.826725 ACTAGCAGCGGAGTTACTTTCT 59.173 45.455 0.00 0.00 0.00 2.52
5038 5946 2.924290 CACTAGCAGCGGAGTTACTTTC 59.076 50.000 0.47 0.00 0.00 2.62
5039 5947 2.561419 TCACTAGCAGCGGAGTTACTTT 59.439 45.455 0.47 0.00 0.00 2.66
5040 5948 2.168496 TCACTAGCAGCGGAGTTACTT 58.832 47.619 0.47 0.00 0.00 2.24
5041 5949 1.835494 TCACTAGCAGCGGAGTTACT 58.165 50.000 0.47 0.00 0.00 2.24
5042 5950 2.873133 ATCACTAGCAGCGGAGTTAC 57.127 50.000 0.47 0.00 0.00 2.50
5043 5951 3.255888 CCATATCACTAGCAGCGGAGTTA 59.744 47.826 0.47 0.00 0.00 2.24
5044 5952 2.036475 CCATATCACTAGCAGCGGAGTT 59.964 50.000 0.47 0.00 0.00 3.01
5045 5953 1.615883 CCATATCACTAGCAGCGGAGT 59.384 52.381 0.00 0.00 0.00 3.85
5046 5954 1.615883 ACCATATCACTAGCAGCGGAG 59.384 52.381 0.00 0.00 0.00 4.63
5047 5955 1.704641 ACCATATCACTAGCAGCGGA 58.295 50.000 0.00 0.00 0.00 5.54
5048 5956 3.579709 CTTACCATATCACTAGCAGCGG 58.420 50.000 0.00 0.00 0.00 5.52
5049 5957 2.989840 GCTTACCATATCACTAGCAGCG 59.010 50.000 0.00 0.00 0.00 5.18
5050 5958 3.995199 TGCTTACCATATCACTAGCAGC 58.005 45.455 0.00 0.00 34.05 5.25
5051 5959 7.012704 ACAAATTGCTTACCATATCACTAGCAG 59.987 37.037 0.00 0.00 39.49 4.24
5052 5960 6.828273 ACAAATTGCTTACCATATCACTAGCA 59.172 34.615 0.00 0.00 36.90 3.49
5053 5961 7.134815 CACAAATTGCTTACCATATCACTAGC 58.865 38.462 0.00 0.00 0.00 3.42
5070 5978 0.249405 ACAGGTTGCCGCACAAATTG 60.249 50.000 0.00 0.00 40.82 2.32
5071 5979 1.269448 CTACAGGTTGCCGCACAAATT 59.731 47.619 0.00 0.00 40.82 1.82
5072 5980 0.881118 CTACAGGTTGCCGCACAAAT 59.119 50.000 0.00 0.00 40.82 2.32
5073 5981 0.179043 TCTACAGGTTGCCGCACAAA 60.179 50.000 0.00 0.00 40.82 2.83
5074 5982 0.602638 CTCTACAGGTTGCCGCACAA 60.603 55.000 0.00 0.00 35.33 3.33
5075 5983 1.005037 CTCTACAGGTTGCCGCACA 60.005 57.895 0.00 0.00 0.00 4.57
5076 5984 2.391389 GCTCTACAGGTTGCCGCAC 61.391 63.158 0.00 0.00 0.00 5.34
5077 5985 2.047274 GCTCTACAGGTTGCCGCA 60.047 61.111 0.00 0.00 0.00 5.69
5078 5986 2.103042 CAGCTCTACAGGTTGCCGC 61.103 63.158 0.00 0.00 0.00 6.53
5079 5987 0.530744 TACAGCTCTACAGGTTGCCG 59.469 55.000 0.00 0.00 0.00 5.69
5080 5988 1.740718 GCTACAGCTCTACAGGTTGCC 60.741 57.143 0.00 0.00 38.21 4.52
5081 5989 1.646189 GCTACAGCTCTACAGGTTGC 58.354 55.000 0.00 0.00 38.21 4.17
5082 5990 1.827969 AGGCTACAGCTCTACAGGTTG 59.172 52.381 0.54 0.00 41.70 3.77
5083 5991 2.104170 GAGGCTACAGCTCTACAGGTT 58.896 52.381 0.54 0.00 41.70 3.50
5084 5992 1.286553 AGAGGCTACAGCTCTACAGGT 59.713 52.381 0.54 0.00 41.70 4.00
5085 5993 1.680735 CAGAGGCTACAGCTCTACAGG 59.319 57.143 0.54 0.00 41.70 4.00
5086 5994 1.066908 GCAGAGGCTACAGCTCTACAG 59.933 57.143 0.54 0.00 41.70 2.74
5087 5995 1.107114 GCAGAGGCTACAGCTCTACA 58.893 55.000 0.54 0.00 41.70 2.74
5088 5996 0.387565 GGCAGAGGCTACAGCTCTAC 59.612 60.000 0.54 0.00 41.70 2.59
5089 5997 0.260230 AGGCAGAGGCTACAGCTCTA 59.740 55.000 0.54 0.00 41.70 2.43
5090 5998 1.001503 AGGCAGAGGCTACAGCTCT 59.998 57.895 0.54 0.00 41.70 4.09
5091 5999 1.143620 CAGGCAGAGGCTACAGCTC 59.856 63.158 0.54 0.00 41.70 4.09
5092 6000 3.307445 CAGGCAGAGGCTACAGCT 58.693 61.111 0.54 0.00 41.70 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.