Multiple sequence alignment - TraesCS7B01G179900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G179900 chr7B 100.000 5324 0 0 1 5324 267244123 267238800 0.000000e+00 9832.0
1 TraesCS7B01G179900 chr7B 79.964 1098 127 45 1017 2086 650241572 650240540 0.000000e+00 723.0
2 TraesCS7B01G179900 chr7B 82.275 378 43 17 3329 3690 650239441 650239072 6.700000e-79 305.0
3 TraesCS7B01G179900 chr7B 88.889 198 22 0 2611 2808 650239941 650239744 1.480000e-60 244.0
4 TraesCS7B01G179900 chr7B 87.805 123 15 0 2333 2455 650240219 650240097 1.550000e-30 145.0
5 TraesCS7B01G179900 chr7B 88.991 109 12 0 2910 3018 650239691 650239583 9.300000e-28 135.0
6 TraesCS7B01G179900 chr7B 86.813 91 12 0 2152 2242 650240442 650240352 9.430000e-18 102.0
7 TraesCS7B01G179900 chr7B 100.000 28 0 0 2545 2572 650239986 650239959 1.000000e-02 52.8
8 TraesCS7B01G179900 chr7A 88.516 1698 92 50 1181 2823 303964422 303966071 0.000000e+00 1960.0
9 TraesCS7B01G179900 chr7A 80.189 1166 119 60 1015 2146 674300925 674299838 0.000000e+00 771.0
10 TraesCS7B01G179900 chr7A 90.455 440 19 11 3988 4408 303967145 303967580 4.660000e-155 558.0
11 TraesCS7B01G179900 chr7A 89.220 436 17 9 3332 3753 303966567 303966986 7.900000e-143 518.0
12 TraesCS7B01G179900 chr7A 86.588 425 20 8 2901 3305 303966103 303966510 8.190000e-118 435.0
13 TraesCS7B01G179900 chr7A 87.632 380 14 9 856 1208 303963984 303964357 1.380000e-110 411.0
14 TraesCS7B01G179900 chr7A 91.246 297 15 2 109 405 303962918 303963203 1.390000e-105 394.0
15 TraesCS7B01G179900 chr7A 83.784 370 32 16 3335 3690 674298893 674298538 5.140000e-85 326.0
16 TraesCS7B01G179900 chr7A 89.005 191 21 0 2618 2808 674299291 674299101 2.480000e-58 237.0
17 TraesCS7B01G179900 chr7A 90.000 140 14 0 627 766 303963766 303963905 1.180000e-41 182.0
18 TraesCS7B01G179900 chr7A 80.478 251 27 8 4009 4243 674298529 674298285 7.090000e-39 172.0
19 TraesCS7B01G179900 chr7A 91.743 109 9 0 2913 3021 674299062 674298954 9.240000e-33 152.0
20 TraesCS7B01G179900 chr7A 89.256 121 7 3 457 571 442030119 442029999 4.300000e-31 147.0
21 TraesCS7B01G179900 chr7A 90.351 114 7 1 457 566 600791731 600791844 4.300000e-31 147.0
22 TraesCS7B01G179900 chr7A 89.474 114 6 4 5107 5220 303970615 303970722 7.190000e-29 139.0
23 TraesCS7B01G179900 chr7A 87.395 119 15 0 2333 2451 674299591 674299473 2.590000e-28 137.0
24 TraesCS7B01G179900 chr7A 97.297 74 2 0 36 109 303962572 303962645 5.600000e-25 126.0
25 TraesCS7B01G179900 chr7A 98.529 68 1 0 804 871 303963903 303963970 2.600000e-23 121.0
26 TraesCS7B01G179900 chr7D 87.698 1260 65 36 750 1965 271767348 271768561 0.000000e+00 1386.0
27 TraesCS7B01G179900 chr7D 83.582 1005 44 52 3456 4432 271770210 271771121 0.000000e+00 830.0
28 TraesCS7B01G179900 chr7D 93.548 527 17 9 2283 2808 271769062 271769572 0.000000e+00 769.0
29 TraesCS7B01G179900 chr7D 95.076 264 13 0 200 463 271759461 271759724 2.970000e-112 416.0
30 TraesCS7B01G179900 chr7D 80.901 555 64 22 1017 1567 582502064 582501548 2.990000e-107 399.0
31 TraesCS7B01G179900 chr7D 87.366 372 16 13 2928 3277 271769606 271769968 1.070000e-106 398.0
32 TraesCS7B01G179900 chr7D 81.237 485 52 27 2333 2808 582464742 582464288 6.560000e-94 355.0
33 TraesCS7B01G179900 chr7D 91.700 253 10 3 2027 2275 271768774 271769019 1.840000e-89 340.0
34 TraesCS7B01G179900 chr7D 83.287 359 34 15 3335 3679 582463581 582463235 1.860000e-79 307.0
35 TraesCS7B01G179900 chr7D 90.868 219 16 4 5109 5324 271923805 271924022 1.880000e-74 291.0
36 TraesCS7B01G179900 chr7D 78.470 353 47 23 1809 2147 582465321 582464984 2.510000e-48 204.0
37 TraesCS7B01G179900 chr7D 90.370 135 5 6 3333 3466 271770053 271770180 2.550000e-38 171.0
38 TraesCS7B01G179900 chr7D 84.530 181 11 8 621 789 271759851 271760026 4.270000e-36 163.0
39 TraesCS7B01G179900 chr7D 89.320 103 11 0 2910 3012 582464222 582464120 4.330000e-26 130.0
40 TraesCS7B01G179900 chr7D 93.333 60 4 0 562 621 271759722 271759781 7.340000e-14 89.8
41 TraesCS7B01G179900 chr1A 95.985 523 20 1 4593 5115 240674215 240674736 0.000000e+00 848.0
42 TraesCS7B01G179900 chr5A 96.318 516 18 1 4596 5111 29637316 29636802 0.000000e+00 846.0
43 TraesCS7B01G179900 chr6A 95.977 522 18 3 4593 5114 453902888 453903406 0.000000e+00 845.0
44 TraesCS7B01G179900 chr6A 92.308 65 5 0 2838 2902 573510876 573510812 5.680000e-15 93.5
45 TraesCS7B01G179900 chrUn 95.954 519 20 1 4593 5111 210180709 210180192 0.000000e+00 841.0
46 TraesCS7B01G179900 chr4A 95.785 522 20 2 4593 5114 595062389 595062908 0.000000e+00 841.0
47 TraesCS7B01G179900 chr4A 95.161 62 3 0 2842 2903 553401922 553401861 1.220000e-16 99.0
48 TraesCS7B01G179900 chr4A 90.909 66 6 0 2841 2906 6936614 6936549 7.340000e-14 89.8
49 TraesCS7B01G179900 chr4A 86.585 82 7 4 2839 2918 573887012 573886933 2.640000e-13 87.9
50 TraesCS7B01G179900 chr2D 95.785 522 20 2 4593 5114 318334923 318335442 0.000000e+00 841.0
51 TraesCS7B01G179900 chr2D 90.351 114 7 1 457 566 344879986 344879873 4.300000e-31 147.0
52 TraesCS7B01G179900 chr2D 89.565 115 8 1 457 567 579421585 579421471 5.560000e-30 143.0
53 TraesCS7B01G179900 chr2A 95.946 518 20 1 4593 5110 377817085 377816569 0.000000e+00 839.0
54 TraesCS7B01G179900 chr5D 95.437 526 22 2 4593 5118 503764114 503764637 0.000000e+00 837.0
55 TraesCS7B01G179900 chr4D 95.938 517 20 1 4593 5109 43833696 43834211 0.000000e+00 837.0
56 TraesCS7B01G179900 chr4D 89.474 114 8 1 457 566 29093479 29093366 2.000000e-29 141.0
57 TraesCS7B01G179900 chr1D 90.351 114 7 1 457 566 280936933 280936820 4.300000e-31 147.0
58 TraesCS7B01G179900 chr1D 93.939 66 4 0 2840 2905 351255384 351255319 3.390000e-17 100.0
59 TraesCS7B01G179900 chr1B 89.744 117 8 1 454 566 315828823 315828939 4.300000e-31 147.0
60 TraesCS7B01G179900 chr6D 89.474 114 8 1 457 566 128989377 128989264 2.000000e-29 141.0
61 TraesCS7B01G179900 chr6D 89.474 114 8 1 457 566 352037310 352037197 2.000000e-29 141.0
62 TraesCS7B01G179900 chr2B 95.522 67 3 0 2838 2904 321689905 321689839 2.030000e-19 108.0
63 TraesCS7B01G179900 chr5B 93.750 64 4 0 2841 2904 591828395 591828458 4.390000e-16 97.1
64 TraesCS7B01G179900 chr5B 93.548 62 4 0 2841 2902 370194767 370194706 5.680000e-15 93.5
65 TraesCS7B01G179900 chr5B 91.304 69 5 1 2841 2908 370239627 370239559 5.680000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G179900 chr7B 267238800 267244123 5323 True 9832.000000 9832 100.000000 1 5324 1 chr7B.!!$R1 5323
1 TraesCS7B01G179900 chr7B 650239072 650241572 2500 True 243.828571 723 87.819571 1017 3690 7 chr7B.!!$R2 2673
2 TraesCS7B01G179900 chr7A 303962572 303970722 8150 False 484.400000 1960 90.895700 36 5220 10 chr7A.!!$F2 5184
3 TraesCS7B01G179900 chr7A 674298285 674300925 2640 True 299.166667 771 85.432333 1015 4243 6 chr7A.!!$R2 3228
4 TraesCS7B01G179900 chr7D 271767348 271771121 3773 False 649.000000 1386 89.044000 750 4432 6 chr7D.!!$F3 3682
5 TraesCS7B01G179900 chr7D 582501548 582502064 516 True 399.000000 399 80.901000 1017 1567 1 chr7D.!!$R1 550
6 TraesCS7B01G179900 chr7D 582463235 582465321 2086 True 249.000000 355 83.078500 1809 3679 4 chr7D.!!$R2 1870
7 TraesCS7B01G179900 chr7D 271759461 271760026 565 False 222.933333 416 90.979667 200 789 3 chr7D.!!$F2 589
8 TraesCS7B01G179900 chr1A 240674215 240674736 521 False 848.000000 848 95.985000 4593 5115 1 chr1A.!!$F1 522
9 TraesCS7B01G179900 chr5A 29636802 29637316 514 True 846.000000 846 96.318000 4596 5111 1 chr5A.!!$R1 515
10 TraesCS7B01G179900 chr6A 453902888 453903406 518 False 845.000000 845 95.977000 4593 5114 1 chr6A.!!$F1 521
11 TraesCS7B01G179900 chrUn 210180192 210180709 517 True 841.000000 841 95.954000 4593 5111 1 chrUn.!!$R1 518
12 TraesCS7B01G179900 chr4A 595062389 595062908 519 False 841.000000 841 95.785000 4593 5114 1 chr4A.!!$F1 521
13 TraesCS7B01G179900 chr2D 318334923 318335442 519 False 841.000000 841 95.785000 4593 5114 1 chr2D.!!$F1 521
14 TraesCS7B01G179900 chr2A 377816569 377817085 516 True 839.000000 839 95.946000 4593 5110 1 chr2A.!!$R1 517
15 TraesCS7B01G179900 chr5D 503764114 503764637 523 False 837.000000 837 95.437000 4593 5118 1 chr5D.!!$F1 525
16 TraesCS7B01G179900 chr4D 43833696 43834211 515 False 837.000000 837 95.938000 4593 5109 1 chr4D.!!$F1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
476 877 0.033796 ACATACTCCCTCCGTTCGGA 60.034 55.0 13.34 13.34 0.00 4.55 F
1495 2507 0.179073 AACTTCATGGAGATCGGGCG 60.179 55.0 8.39 0.00 0.00 6.13 F
1643 2678 0.260816 AGATTGCTCCACATGGGCAT 59.739 50.0 12.87 5.81 39.75 4.40 F
3282 5295 0.036952 CAATCACTCACTGGACCGCT 60.037 55.0 0.00 0.00 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2308 3692 0.670546 CCCATCGTCGTCAGTTGCTT 60.671 55.0 0.00 0.0 0.00 3.91 R
2948 4444 0.030235 CAACCTGCATGCATCCATCG 59.970 55.0 22.97 8.2 0.00 3.84 R
3642 5771 0.179113 AGCGCAAGTTTTGTGTTGGG 60.179 50.0 11.47 0.0 42.92 4.12 R
5018 9014 0.033366 AAGCGGCGGAAAAGCAAAAT 59.967 45.0 9.78 0.0 39.27 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.939764 AGGCCTCTGTTTCTTTTCTTTTT 57.060 34.783 0.00 0.00 0.00 1.94
93 94 1.727335 GCTAGTTTGAAGCGTCAGGTC 59.273 52.381 1.81 0.00 34.49 3.85
105 106 2.156917 CGTCAGGTCAGGTGTACAGTA 58.843 52.381 0.00 0.00 0.00 2.74
140 414 6.834107 AGTGGTAAAACTAAAAGCAGTCCTA 58.166 36.000 0.00 0.00 0.00 2.94
151 425 5.489792 AAAGCAGTCCTACAGAAATGAGA 57.510 39.130 0.00 0.00 0.00 3.27
152 426 5.489792 AAGCAGTCCTACAGAAATGAGAA 57.510 39.130 0.00 0.00 0.00 2.87
154 428 4.774726 AGCAGTCCTACAGAAATGAGAAGA 59.225 41.667 0.00 0.00 0.00 2.87
174 448 2.135664 AGTATGATAGAACGCGTGCC 57.864 50.000 14.98 8.35 0.00 5.01
175 449 0.776451 GTATGATAGAACGCGTGCCG 59.224 55.000 14.98 0.00 44.21 5.69
176 450 0.318360 TATGATAGAACGCGTGCCGG 60.318 55.000 14.98 0.00 42.52 6.13
177 451 3.627218 GATAGAACGCGTGCCGGC 61.627 66.667 22.73 22.73 42.52 6.13
227 501 2.849942 TGACTGTCAAGAATGGTGGTG 58.150 47.619 8.27 0.00 0.00 4.17
229 503 1.494721 ACTGTCAAGAATGGTGGTGGT 59.505 47.619 0.00 0.00 0.00 4.16
240 514 0.966179 GGTGGTGGTTTGGATTGGAC 59.034 55.000 0.00 0.00 0.00 4.02
310 584 2.046023 TGCACCGCCTCCATTCTG 60.046 61.111 0.00 0.00 0.00 3.02
375 649 2.789842 CATGGACTGCTCATGGTGG 58.210 57.895 0.00 0.00 38.55 4.61
460 861 9.102757 CATAAATTCACTCAACTACTGCTACAT 57.897 33.333 0.00 0.00 0.00 2.29
462 863 8.480643 AAATTCACTCAACTACTGCTACATAC 57.519 34.615 0.00 0.00 0.00 2.39
464 865 6.438259 TCACTCAACTACTGCTACATACTC 57.562 41.667 0.00 0.00 0.00 2.59
465 866 5.357314 TCACTCAACTACTGCTACATACTCC 59.643 44.000 0.00 0.00 0.00 3.85
466 867 4.645588 ACTCAACTACTGCTACATACTCCC 59.354 45.833 0.00 0.00 0.00 4.30
467 868 4.868268 TCAACTACTGCTACATACTCCCT 58.132 43.478 0.00 0.00 0.00 4.20
468 869 4.888239 TCAACTACTGCTACATACTCCCTC 59.112 45.833 0.00 0.00 0.00 4.30
469 870 3.834938 ACTACTGCTACATACTCCCTCC 58.165 50.000 0.00 0.00 0.00 4.30
470 871 1.693627 ACTGCTACATACTCCCTCCG 58.306 55.000 0.00 0.00 0.00 4.63
471 872 1.063867 ACTGCTACATACTCCCTCCGT 60.064 52.381 0.00 0.00 0.00 4.69
472 873 2.032620 CTGCTACATACTCCCTCCGTT 58.967 52.381 0.00 0.00 0.00 4.44
473 874 2.029623 TGCTACATACTCCCTCCGTTC 58.970 52.381 0.00 0.00 0.00 3.95
474 875 1.001597 GCTACATACTCCCTCCGTTCG 60.002 57.143 0.00 0.00 0.00 3.95
475 876 1.607628 CTACATACTCCCTCCGTTCGG 59.392 57.143 4.74 4.74 0.00 4.30
476 877 0.033796 ACATACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
477 878 1.108776 CATACTCCCTCCGTTCGGAA 58.891 55.000 14.79 0.00 33.41 4.30
478 879 1.687123 CATACTCCCTCCGTTCGGAAT 59.313 52.381 14.79 2.14 33.41 3.01
479 880 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
480 881 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
481 882 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
482 883 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
483 884 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
484 885 1.479323 CCCTCCGTTCGGAATTACTCA 59.521 52.381 14.79 0.00 33.41 3.41
485 886 2.102588 CCCTCCGTTCGGAATTACTCAT 59.897 50.000 14.79 0.00 33.41 2.90
486 887 3.431766 CCCTCCGTTCGGAATTACTCATT 60.432 47.826 14.79 0.00 33.41 2.57
487 888 3.802685 CCTCCGTTCGGAATTACTCATTC 59.197 47.826 14.79 0.00 40.79 2.67
488 889 4.430007 CTCCGTTCGGAATTACTCATTCA 58.570 43.478 14.79 0.00 43.04 2.57
489 890 4.823157 TCCGTTCGGAATTACTCATTCAA 58.177 39.130 11.66 0.00 43.04 2.69
490 891 5.239351 TCCGTTCGGAATTACTCATTCAAA 58.761 37.500 11.66 0.00 43.04 2.69
491 892 5.701750 TCCGTTCGGAATTACTCATTCAAAA 59.298 36.000 11.66 0.00 43.04 2.44
492 893 6.205076 TCCGTTCGGAATTACTCATTCAAAAA 59.795 34.615 11.66 0.00 43.04 1.94
542 943 8.928448 AGTTGTAGATACATCCATATGACAAGT 58.072 33.333 3.65 3.74 36.54 3.16
550 951 9.996554 ATACATCCATATGACAAGTAATTTCGA 57.003 29.630 3.65 0.00 36.54 3.71
551 952 8.731275 ACATCCATATGACAAGTAATTTCGAA 57.269 30.769 3.65 0.00 36.54 3.71
552 953 8.612619 ACATCCATATGACAAGTAATTTCGAAC 58.387 33.333 3.65 0.00 36.54 3.95
553 954 7.229228 TCCATATGACAAGTAATTTCGAACG 57.771 36.000 3.65 0.00 0.00 3.95
554 955 6.256975 TCCATATGACAAGTAATTTCGAACGG 59.743 38.462 3.65 0.00 0.00 4.44
555 956 6.256975 CCATATGACAAGTAATTTCGAACGGA 59.743 38.462 3.65 0.00 0.00 4.69
556 957 5.779806 ATGACAAGTAATTTCGAACGGAG 57.220 39.130 0.00 0.00 0.00 4.63
557 958 3.991773 TGACAAGTAATTTCGAACGGAGG 59.008 43.478 0.00 0.00 0.00 4.30
558 959 4.240096 GACAAGTAATTTCGAACGGAGGA 58.760 43.478 0.00 0.00 0.00 3.71
559 960 4.634199 ACAAGTAATTTCGAACGGAGGAA 58.366 39.130 0.00 0.00 0.00 3.36
560 961 4.689345 ACAAGTAATTTCGAACGGAGGAAG 59.311 41.667 0.00 0.00 0.00 3.46
564 965 4.532314 AATTTCGAACGGAGGAAGTACT 57.468 40.909 0.00 0.00 0.00 2.73
569 970 5.649782 TCGAACGGAGGAAGTACTAATTT 57.350 39.130 0.00 0.00 0.00 1.82
572 973 5.445540 CGAACGGAGGAAGTACTAATTTTGC 60.446 44.000 0.00 0.00 0.00 3.68
636 1419 3.605692 GCACTCAGAGAGAAAAGTTTGCG 60.606 47.826 3.79 0.00 33.32 4.85
660 1447 5.249420 AGCTGAAACTTTTATGTCCCTCTC 58.751 41.667 0.00 0.00 0.00 3.20
668 1455 5.544176 ACTTTTATGTCCCTCTCAAGTCTCA 59.456 40.000 0.00 0.00 0.00 3.27
682 1469 8.219546 TCTCAAGTCTCAAGTGTATCTATCTG 57.780 38.462 0.00 0.00 0.00 2.90
745 1537 0.765510 AGAGTTTGGAACGGAAGGCT 59.234 50.000 0.00 0.00 36.23 4.58
760 1552 3.492137 GGAAGGCTGTTCCGATTACGTAT 60.492 47.826 0.00 0.00 40.77 3.06
766 1597 4.261741 GCTGTTCCGATTACGTATAGGGAA 60.262 45.833 14.26 14.26 37.88 3.97
767 1598 5.737063 GCTGTTCCGATTACGTATAGGGAAA 60.737 44.000 17.90 10.76 33.26 3.13
768 1599 5.835257 TGTTCCGATTACGTATAGGGAAAG 58.165 41.667 17.90 0.00 33.26 2.62
769 1600 5.221303 TGTTCCGATTACGTATAGGGAAAGG 60.221 44.000 17.90 8.27 33.26 3.11
770 1601 3.256631 TCCGATTACGTATAGGGAAAGGC 59.743 47.826 0.00 0.00 37.88 4.35
771 1602 3.582780 CGATTACGTATAGGGAAAGGCC 58.417 50.000 0.00 0.00 34.56 5.19
772 1603 3.582780 GATTACGTATAGGGAAAGGCCG 58.417 50.000 0.00 0.00 37.63 6.13
773 1604 1.331214 TACGTATAGGGAAAGGCCGG 58.669 55.000 0.00 0.00 37.63 6.13
774 1605 1.301479 CGTATAGGGAAAGGCCGGC 60.301 63.158 21.18 21.18 37.63 6.13
775 1606 1.072678 GTATAGGGAAAGGCCGGCC 59.927 63.158 39.29 39.29 37.63 6.13
776 1607 2.513259 TATAGGGAAAGGCCGGCCG 61.513 63.158 38.88 21.04 41.95 6.13
791 1622 3.916544 CCGGCAGCGGCTCTCATA 61.917 66.667 9.17 0.00 40.87 2.15
792 1623 2.659897 CGGCAGCGGCTCTCATAC 60.660 66.667 9.17 0.00 40.87 2.39
793 1624 2.280457 GGCAGCGGCTCTCATACC 60.280 66.667 9.17 0.00 40.87 2.73
794 1625 2.280457 GCAGCGGCTCTCATACCC 60.280 66.667 0.00 0.00 36.96 3.69
795 1626 2.423446 CAGCGGCTCTCATACCCC 59.577 66.667 0.00 0.00 0.00 4.95
796 1627 2.844839 AGCGGCTCTCATACCCCC 60.845 66.667 0.00 0.00 0.00 5.40
918 1781 2.812619 CGATCTCCCCTCCTTGGCC 61.813 68.421 0.00 0.00 0.00 5.36
921 1784 2.923852 ATCTCCCCTCCTTGGCCTCC 62.924 65.000 3.32 0.00 0.00 4.30
940 1806 3.290710 TCCTTGTACGACCTGTATACCC 58.709 50.000 0.00 0.00 35.02 3.69
943 1809 3.370840 TGTACGACCTGTATACCCTGT 57.629 47.619 0.00 0.00 35.02 4.00
954 1820 0.819582 ATACCCTGTACAACGTCCCG 59.180 55.000 0.00 0.00 0.00 5.14
1032 1922 1.896660 GTCACACCACAATGGCGGT 60.897 57.895 0.00 0.00 42.67 5.68
1178 2068 6.438425 AGTCCGACCCAGTAAGAAAATTAGTA 59.562 38.462 0.00 0.00 0.00 1.82
1363 2371 2.544726 GTGAGTAGCCAGCACCAAC 58.455 57.895 0.00 0.00 0.00 3.77
1369 2377 2.162681 GTAGCCAGCACCAACTGAATT 58.837 47.619 0.00 0.00 40.25 2.17
1372 2380 3.230134 AGCCAGCACCAACTGAATTAAA 58.770 40.909 0.00 0.00 40.25 1.52
1373 2381 3.256631 AGCCAGCACCAACTGAATTAAAG 59.743 43.478 0.00 0.00 40.25 1.85
1383 2391 7.327761 CACCAACTGAATTAAAGAATCAAGCAG 59.672 37.037 0.00 0.00 0.00 4.24
1403 2411 4.024218 GCAGTCCATGAATCTTGCATAGAC 60.024 45.833 0.00 0.00 35.52 2.59
1406 2414 4.993584 GTCCATGAATCTTGCATAGACGAT 59.006 41.667 0.00 0.00 35.19 3.73
1407 2415 5.468072 GTCCATGAATCTTGCATAGACGATT 59.532 40.000 0.00 0.00 35.19 3.34
1411 2422 9.322773 CCATGAATCTTGCATAGACGATTATAT 57.677 33.333 0.00 0.00 35.19 0.86
1439 2451 7.795047 ACCGATGATTCAATCTGGCATATATA 58.205 34.615 0.00 0.00 0.00 0.86
1440 2452 8.435187 ACCGATGATTCAATCTGGCATATATAT 58.565 33.333 0.00 0.00 0.00 0.86
1495 2507 0.179073 AACTTCATGGAGATCGGGCG 60.179 55.000 8.39 0.00 0.00 6.13
1496 2508 1.958205 CTTCATGGAGATCGGGCGC 60.958 63.158 0.00 0.00 0.00 6.53
1559 2571 2.647158 GGCCGACCTCCTCTTCGTT 61.647 63.158 0.00 0.00 33.23 3.85
1573 2585 3.656559 TCTTCGTTGTAAGTAGCAACCC 58.343 45.455 0.00 0.00 42.12 4.11
1574 2586 3.069872 TCTTCGTTGTAAGTAGCAACCCA 59.930 43.478 0.00 0.00 42.12 4.51
1575 2587 3.472283 TCGTTGTAAGTAGCAACCCAA 57.528 42.857 0.00 0.00 42.12 4.12
1576 2588 3.132925 TCGTTGTAAGTAGCAACCCAAC 58.867 45.455 0.00 0.00 42.12 3.77
1579 2591 3.134574 TGTAAGTAGCAACCCAACCTG 57.865 47.619 0.00 0.00 0.00 4.00
1598 2610 4.241681 CCTGTTCTTCTTCTTCTTCCTCG 58.758 47.826 0.00 0.00 0.00 4.63
1608 2620 3.744719 CTTCCTCGTCGCGTGGGA 61.745 66.667 5.77 7.00 40.35 4.37
1621 2656 1.858399 GCGTGGGACGTTTTTGAGTTG 60.858 52.381 0.00 0.00 44.73 3.16
1634 2669 3.490439 TTGAGTTGTGAGATTGCTCCA 57.510 42.857 0.00 0.00 40.55 3.86
1642 2677 0.394762 GAGATTGCTCCACATGGGCA 60.395 55.000 9.26 9.26 38.82 5.36
1643 2678 0.260816 AGATTGCTCCACATGGGCAT 59.739 50.000 12.87 5.81 39.75 4.40
1644 2679 0.387929 GATTGCTCCACATGGGCATG 59.612 55.000 12.87 0.00 44.15 4.06
1645 2680 1.682451 ATTGCTCCACATGGGCATGC 61.682 55.000 9.90 9.90 42.39 4.06
1666 2701 2.203294 GTGCAGGACAACCCCGTT 60.203 61.111 0.00 0.00 36.73 4.44
2004 3244 7.603404 TCAATCCATTAACTGAATTTTTGGCTG 59.397 33.333 0.00 0.00 0.00 4.85
2006 3246 7.243604 TCCATTAACTGAATTTTTGGCTGAT 57.756 32.000 0.00 0.00 0.00 2.90
2007 3247 7.098477 TCCATTAACTGAATTTTTGGCTGATG 58.902 34.615 0.00 0.00 0.00 3.07
2008 3248 6.875195 CCATTAACTGAATTTTTGGCTGATGT 59.125 34.615 0.00 0.00 0.00 3.06
2009 3249 8.034215 CCATTAACTGAATTTTTGGCTGATGTA 58.966 33.333 0.00 0.00 0.00 2.29
2010 3250 8.863049 CATTAACTGAATTTTTGGCTGATGTAC 58.137 33.333 0.00 0.00 0.00 2.90
2011 3251 6.655078 AACTGAATTTTTGGCTGATGTACT 57.345 33.333 0.00 0.00 0.00 2.73
2012 3252 6.017400 ACTGAATTTTTGGCTGATGTACTG 57.983 37.500 0.00 0.00 0.00 2.74
2013 3253 5.536161 ACTGAATTTTTGGCTGATGTACTGT 59.464 36.000 0.00 0.00 0.00 3.55
2014 3254 5.771469 TGAATTTTTGGCTGATGTACTGTG 58.229 37.500 0.00 0.00 0.00 3.66
2015 3255 3.641437 TTTTTGGCTGATGTACTGTGC 57.359 42.857 0.00 0.00 0.00 4.57
2016 3256 1.533625 TTTGGCTGATGTACTGTGCC 58.466 50.000 11.05 11.05 43.49 5.01
2018 3258 2.471255 GGCTGATGTACTGTGCCAC 58.529 57.895 12.44 0.00 42.79 5.01
2019 3259 1.361668 GGCTGATGTACTGTGCCACG 61.362 60.000 12.44 0.00 42.79 4.94
2020 3260 1.970917 GCTGATGTACTGTGCCACGC 61.971 60.000 0.00 0.00 0.00 5.34
2021 3261 1.361668 CTGATGTACTGTGCCACGCC 61.362 60.000 0.00 0.00 0.00 5.68
2022 3262 2.434185 ATGTACTGTGCCACGCCG 60.434 61.111 0.00 0.00 0.00 6.46
2025 3265 4.386951 TACTGTGCCACGCCGCAT 62.387 61.111 0.00 0.00 41.70 4.73
2168 3453 9.186837 CAGAGAGAATTTACTACTTACTGGGTA 57.813 37.037 0.00 0.00 0.00 3.69
2196 3481 2.280592 GGGGCCCGTTGCTATACG 60.281 66.667 17.79 0.00 40.92 3.06
2199 3484 0.878961 GGGCCCGTTGCTATACGAAG 60.879 60.000 5.69 1.74 43.99 3.79
2204 3489 2.159282 CCCGTTGCTATACGAAGTGTCT 60.159 50.000 7.91 0.00 45.73 3.41
2270 3618 2.086869 ACCTTCCAATTCTGTGCGATG 58.913 47.619 0.00 0.00 0.00 3.84
2276 3624 2.609459 CCAATTCTGTGCGATGGAGTAC 59.391 50.000 0.00 0.00 32.82 2.73
2279 3627 2.654749 TCTGTGCGATGGAGTACTTG 57.345 50.000 0.00 0.00 0.00 3.16
2326 3710 1.148310 AAAGCAACTGACGACGATGG 58.852 50.000 0.00 0.00 0.00 3.51
2464 3928 3.237741 CGCATCCTCCCTCCCTCC 61.238 72.222 0.00 0.00 0.00 4.30
2501 3979 5.277538 CCTCTGCTTTGTTTGTGTTCTACTC 60.278 44.000 0.00 0.00 0.00 2.59
2503 3981 4.265893 TGCTTTGTTTGTGTTCTACTCCA 58.734 39.130 0.00 0.00 0.00 3.86
2506 3984 6.017440 TGCTTTGTTTGTGTTCTACTCCATAC 60.017 38.462 0.00 0.00 0.00 2.39
2508 3986 7.468084 GCTTTGTTTGTGTTCTACTCCATACAA 60.468 37.037 0.00 0.00 0.00 2.41
2509 3987 7.490962 TTGTTTGTGTTCTACTCCATACAAG 57.509 36.000 0.00 0.00 30.79 3.16
2510 3988 6.588204 TGTTTGTGTTCTACTCCATACAAGT 58.412 36.000 0.00 0.00 30.79 3.16
2532 4013 4.430137 AGTGCTGACTTGTAATTGCATG 57.570 40.909 7.70 7.70 32.98 4.06
2533 4014 3.192001 AGTGCTGACTTGTAATTGCATGG 59.808 43.478 12.80 5.26 32.98 3.66
2534 4015 3.057315 GTGCTGACTTGTAATTGCATGGT 60.057 43.478 12.80 8.02 32.98 3.55
2535 4016 3.057386 TGCTGACTTGTAATTGCATGGTG 60.057 43.478 12.80 4.92 0.00 4.17
2662 4150 4.742201 TGAGCTCCAAGGCGACGC 62.742 66.667 12.43 12.43 37.29 5.19
2810 4305 1.200020 GCCAAGAATCAACGAGGTTGG 59.800 52.381 8.47 0.00 42.99 3.77
2823 4318 3.154589 GGTTGGCACCACTAGCTAC 57.845 57.895 0.00 0.00 43.61 3.58
2824 4319 0.323629 GGTTGGCACCACTAGCTACA 59.676 55.000 0.00 0.00 43.61 2.74
2825 4320 1.439679 GTTGGCACCACTAGCTACAC 58.560 55.000 0.00 0.00 0.00 2.90
2826 4321 0.323629 TTGGCACCACTAGCTACACC 59.676 55.000 0.00 0.00 0.00 4.16
2827 4322 0.834261 TGGCACCACTAGCTACACCA 60.834 55.000 0.00 0.00 0.00 4.17
2831 4326 3.458189 GCACCACTAGCTACACCATTAG 58.542 50.000 0.00 0.00 0.00 1.73
2835 4330 4.161754 ACCACTAGCTACACCATTAGTTCC 59.838 45.833 0.00 0.00 0.00 3.62
2836 4331 4.406003 CCACTAGCTACACCATTAGTTCCT 59.594 45.833 0.00 0.00 0.00 3.36
2837 4332 5.597182 CCACTAGCTACACCATTAGTTCCTA 59.403 44.000 0.00 0.00 0.00 2.94
2838 4333 6.097839 CCACTAGCTACACCATTAGTTCCTAA 59.902 42.308 0.00 0.00 0.00 2.69
2840 4335 6.896307 ACTAGCTACACCATTAGTTCCTAACT 59.104 38.462 0.00 0.00 45.40 2.24
2841 4336 8.057623 ACTAGCTACACCATTAGTTCCTAACTA 58.942 37.037 0.00 0.00 42.81 2.24
2842 4337 7.110043 AGCTACACCATTAGTTCCTAACTAC 57.890 40.000 0.00 0.00 43.30 2.73
2843 4338 6.896307 AGCTACACCATTAGTTCCTAACTACT 59.104 38.462 0.00 0.00 43.30 2.57
2845 4340 6.541934 ACACCATTAGTTCCTAACTACTCC 57.458 41.667 0.00 0.00 43.30 3.85
2846 4341 5.424573 ACACCATTAGTTCCTAACTACTCCC 59.575 44.000 0.00 0.00 43.30 4.30
2847 4342 5.661759 CACCATTAGTTCCTAACTACTCCCT 59.338 44.000 0.00 0.00 43.30 4.20
2852 4347 2.687425 GTTCCTAACTACTCCCTCCGTC 59.313 54.545 0.00 0.00 0.00 4.79
2854 4349 1.689984 CTAACTACTCCCTCCGTCCC 58.310 60.000 0.00 0.00 0.00 4.46
2855 4350 1.002069 TAACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
2857 4352 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2860 4355 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2861 4356 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2862 4357 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2863 4358 2.563179 CTCCCTCCGTCCCATAATGTAG 59.437 54.545 0.00 0.00 0.00 2.74
2864 4359 2.090943 TCCCTCCGTCCCATAATGTAGT 60.091 50.000 0.00 0.00 0.00 2.73
2865 4360 2.037251 CCCTCCGTCCCATAATGTAGTG 59.963 54.545 0.00 0.00 0.00 2.74
2867 4362 3.243771 CCTCCGTCCCATAATGTAGTGTC 60.244 52.174 0.00 0.00 0.00 3.67
2869 4364 3.770388 TCCGTCCCATAATGTAGTGTCAA 59.230 43.478 0.00 0.00 0.00 3.18
2870 4365 4.223255 TCCGTCCCATAATGTAGTGTCAAA 59.777 41.667 0.00 0.00 0.00 2.69
2871 4366 4.938832 CCGTCCCATAATGTAGTGTCAAAA 59.061 41.667 0.00 0.00 0.00 2.44
2872 4367 5.413213 CCGTCCCATAATGTAGTGTCAAAAA 59.587 40.000 0.00 0.00 0.00 1.94
2897 4392 9.814899 AAACATCTTACATTATGAGACAGAGAG 57.185 33.333 0.00 0.00 0.00 3.20
2898 4393 8.759481 ACATCTTACATTATGAGACAGAGAGA 57.241 34.615 0.00 0.00 0.00 3.10
2899 4394 8.849168 ACATCTTACATTATGAGACAGAGAGAG 58.151 37.037 0.00 0.00 0.00 3.20
2902 4397 9.554395 TCTTACATTATGAGACAGAGAGAGTAG 57.446 37.037 0.00 0.00 0.00 2.57
2921 4416 3.423539 AGTTTCAGTGCAGCTAATGGA 57.576 42.857 0.00 0.00 0.00 3.41
2923 4418 3.693085 AGTTTCAGTGCAGCTAATGGATG 59.307 43.478 0.00 0.00 0.00 3.51
2948 4444 5.390991 GCTTAATTAACCTGCTGTGAGTGAC 60.391 44.000 0.00 0.00 0.00 3.67
2990 4490 0.603975 AGCTCCTGAAACTTGGCGTC 60.604 55.000 0.00 0.00 0.00 5.19
3026 5009 2.420022 CAGCGGACAGGTATGGAAAAAG 59.580 50.000 0.00 0.00 0.00 2.27
3059 5043 4.649692 TCTCTTGTGTCCGACTACTAGTT 58.350 43.478 0.00 0.00 0.00 2.24
3129 5141 3.989817 GCATTTGTTGATTGGTCTTGTCC 59.010 43.478 0.00 0.00 0.00 4.02
3130 5142 3.980646 TTTGTTGATTGGTCTTGTCCG 57.019 42.857 0.00 0.00 0.00 4.79
3166 5178 1.154225 GTGTTGTATGCTGCACGGC 60.154 57.895 3.57 0.00 0.00 5.68
3253 5266 0.182537 TGCTTACCTGCAAGTGTGGT 59.817 50.000 0.00 0.00 40.29 4.16
3277 5290 3.776417 TGGATGATCAATCACTCACTGGA 59.224 43.478 0.00 0.00 40.03 3.86
3282 5295 0.036952 CAATCACTCACTGGACCGCT 60.037 55.000 0.00 0.00 0.00 5.52
3305 5318 0.249238 ACGCATCGCAGAATCTCTCC 60.249 55.000 0.00 0.00 43.58 3.71
3307 5320 1.803998 CGCATCGCAGAATCTCTCCAA 60.804 52.381 0.00 0.00 43.58 3.53
3308 5321 1.596727 GCATCGCAGAATCTCTCCAAC 59.403 52.381 0.00 0.00 43.58 3.77
3309 5322 2.897436 CATCGCAGAATCTCTCCAACA 58.103 47.619 0.00 0.00 43.58 3.33
3310 5323 3.464907 CATCGCAGAATCTCTCCAACAT 58.535 45.455 0.00 0.00 43.58 2.71
3312 5325 4.736126 TCGCAGAATCTCTCCAACATAA 57.264 40.909 0.00 0.00 0.00 1.90
3315 5344 6.816136 TCGCAGAATCTCTCCAACATAATAA 58.184 36.000 0.00 0.00 0.00 1.40
3419 5478 1.233019 AGTGCTGCAACTCACATGTC 58.767 50.000 2.77 0.00 35.76 3.06
3420 5479 1.202734 AGTGCTGCAACTCACATGTCT 60.203 47.619 2.77 0.00 35.76 3.41
3422 5481 3.005554 GTGCTGCAACTCACATGTCTAT 58.994 45.455 2.77 0.00 33.63 1.98
3423 5482 3.004862 TGCTGCAACTCACATGTCTATG 58.995 45.455 0.00 0.00 40.24 2.23
3437 5505 5.007626 ACATGTCTATGTGTGTTTGTGTGTC 59.992 40.000 0.00 0.00 45.54 3.67
3477 5594 9.577110 AATATGAGTTTAACTTGATTGCATGTG 57.423 29.630 0.00 0.00 33.24 3.21
3478 5595 6.389830 TGAGTTTAACTTGATTGCATGTGT 57.610 33.333 0.00 0.00 33.24 3.72
3479 5596 6.207928 TGAGTTTAACTTGATTGCATGTGTG 58.792 36.000 0.00 0.00 33.24 3.82
3480 5597 6.147864 AGTTTAACTTGATTGCATGTGTGT 57.852 33.333 0.00 0.00 33.24 3.72
3481 5598 5.978919 AGTTTAACTTGATTGCATGTGTGTG 59.021 36.000 0.00 0.00 33.24 3.82
3482 5599 2.427232 ACTTGATTGCATGTGTGTGC 57.573 45.000 0.00 0.00 45.25 4.57
3565 5682 2.843545 GGGGGTGAAGGTGAAGCA 59.156 61.111 0.00 0.00 0.00 3.91
3567 5684 1.456287 GGGGTGAAGGTGAAGCAGT 59.544 57.895 0.00 0.00 0.00 4.40
3642 5771 1.032114 GGAGCTGGCCACATGGTAAC 61.032 60.000 0.00 0.00 37.57 2.50
3694 5823 4.661222 TCAAATAATTGAGCACCTCACCA 58.339 39.130 0.00 0.00 40.46 4.17
3695 5824 5.263599 TCAAATAATTGAGCACCTCACCAT 58.736 37.500 0.00 0.00 40.46 3.55
3713 5844 2.639065 CATATACTGTTGGCGTTGGGT 58.361 47.619 0.00 0.00 0.00 4.51
3715 5846 0.398696 ATACTGTTGGCGTTGGGTGA 59.601 50.000 0.00 0.00 0.00 4.02
3716 5847 0.250124 TACTGTTGGCGTTGGGTGAG 60.250 55.000 0.00 0.00 0.00 3.51
3753 5886 4.787551 ACTTAATGCAATAATCCCGTCCA 58.212 39.130 0.00 0.00 0.00 4.02
3754 5887 4.821805 ACTTAATGCAATAATCCCGTCCAG 59.178 41.667 0.00 0.00 0.00 3.86
3755 5888 1.609208 ATGCAATAATCCCGTCCAGC 58.391 50.000 0.00 0.00 0.00 4.85
3756 5889 0.465460 TGCAATAATCCCGTCCAGCC 60.465 55.000 0.00 0.00 0.00 4.85
3757 5890 0.465460 GCAATAATCCCGTCCAGCCA 60.465 55.000 0.00 0.00 0.00 4.75
3758 5891 1.308998 CAATAATCCCGTCCAGCCAC 58.691 55.000 0.00 0.00 0.00 5.01
3759 5892 0.916086 AATAATCCCGTCCAGCCACA 59.084 50.000 0.00 0.00 0.00 4.17
3760 5893 0.469917 ATAATCCCGTCCAGCCACAG 59.530 55.000 0.00 0.00 0.00 3.66
3761 5894 2.252072 TAATCCCGTCCAGCCACAGC 62.252 60.000 0.00 0.00 40.32 4.40
3764 5897 4.415150 CCGTCCAGCCACAGCCAT 62.415 66.667 0.00 0.00 41.25 4.40
3765 5898 3.129502 CGTCCAGCCACAGCCATG 61.130 66.667 0.00 0.00 41.25 3.66
3766 5899 2.753043 GTCCAGCCACAGCCATGG 60.753 66.667 7.63 7.63 43.26 3.66
3778 5911 2.582272 GCCATGGCTGTTTGGATCA 58.418 52.632 29.98 0.00 38.26 2.92
3779 5912 0.174162 GCCATGGCTGTTTGGATCAC 59.826 55.000 29.98 0.00 38.26 3.06
3792 5925 1.555075 TGGATCACTACAGGCTTGACC 59.445 52.381 1.40 0.00 39.61 4.02
3802 5935 2.983512 GGCTTGACCTCTCTGGAGA 58.016 57.895 0.20 0.20 41.86 3.71
3803 5936 1.494960 GGCTTGACCTCTCTGGAGAT 58.505 55.000 0.48 0.00 41.86 2.75
3825 5958 2.611292 GAGTGTGCATTCATCTAGTGGC 59.389 50.000 0.00 0.00 0.00 5.01
3836 5969 3.891977 TCATCTAGTGGCTGGTGAGATAC 59.108 47.826 0.00 0.00 0.00 2.24
3837 5970 3.382083 TCTAGTGGCTGGTGAGATACA 57.618 47.619 0.00 0.00 0.00 2.29
3838 5971 3.291584 TCTAGTGGCTGGTGAGATACAG 58.708 50.000 0.00 0.00 37.76 2.74
3840 5973 2.260822 AGTGGCTGGTGAGATACAGTT 58.739 47.619 0.00 0.00 37.07 3.16
3841 5974 2.639839 AGTGGCTGGTGAGATACAGTTT 59.360 45.455 0.00 0.00 37.07 2.66
3842 5975 3.073062 AGTGGCTGGTGAGATACAGTTTT 59.927 43.478 0.00 0.00 37.07 2.43
3843 5976 3.437049 GTGGCTGGTGAGATACAGTTTTC 59.563 47.826 0.00 0.00 37.07 2.29
3844 5977 3.327757 TGGCTGGTGAGATACAGTTTTCT 59.672 43.478 0.00 0.00 37.07 2.52
3845 5978 3.935828 GGCTGGTGAGATACAGTTTTCTC 59.064 47.826 6.34 6.34 39.07 2.87
3846 5979 4.563580 GGCTGGTGAGATACAGTTTTCTCA 60.564 45.833 10.44 10.44 44.55 3.27
3862 5995 3.382048 TCTCAAGGATCTCATCATGCG 57.618 47.619 0.00 0.00 0.00 4.73
3893 6026 7.482169 TGTCTCTCTACCACACATAGAAAAT 57.518 36.000 0.00 0.00 0.00 1.82
3930 6063 2.630158 CATTGCCTGTGAGAAGAGAGG 58.370 52.381 0.00 0.00 0.00 3.69
3932 6065 0.178921 TGCCTGTGAGAAGAGAGGGT 60.179 55.000 0.00 0.00 0.00 4.34
3934 6067 1.894978 GCCTGTGAGAAGAGAGGGTCT 60.895 57.143 0.00 0.00 36.94 3.85
3958 6091 6.695429 TGCAGGCAGAAATAGTGATAGATAG 58.305 40.000 0.00 0.00 0.00 2.08
3959 6092 6.494835 TGCAGGCAGAAATAGTGATAGATAGA 59.505 38.462 0.00 0.00 0.00 1.98
3960 6093 7.179872 TGCAGGCAGAAATAGTGATAGATAGAT 59.820 37.037 0.00 0.00 0.00 1.98
3961 6094 8.690884 GCAGGCAGAAATAGTGATAGATAGATA 58.309 37.037 0.00 0.00 0.00 1.98
4005 6138 9.937458 ATAGATAGATAGATAGATAGGGGGTCA 57.063 37.037 0.00 0.00 0.00 4.02
4006 6139 8.287904 AGATAGATAGATAGATAGGGGGTCAG 57.712 42.308 0.00 0.00 0.00 3.51
4007 6140 5.742562 AGATAGATAGATAGGGGGTCAGG 57.257 47.826 0.00 0.00 0.00 3.86
4035 6173 0.886043 TGTACTGCTTGCTGCCTGTG 60.886 55.000 0.00 0.00 42.00 3.66
4175 6319 1.066136 GTAGAAACAAGACGACGGCC 58.934 55.000 0.00 0.00 0.00 6.13
4209 6353 2.479560 GCCTGACACCAACACAAGAAAC 60.480 50.000 0.00 0.00 0.00 2.78
4223 6368 4.982295 CACAAGAAACGATTCCTTTTTCCC 59.018 41.667 1.30 0.00 36.12 3.97
4324 6476 5.512753 TGAATAGAGAGAGACATCTGTGC 57.487 43.478 0.00 0.00 35.30 4.57
4325 6477 4.952335 TGAATAGAGAGAGACATCTGTGCA 59.048 41.667 0.00 0.00 35.30 4.57
4351 6520 1.781025 GCTGGCGCAACTGTGTTACA 61.781 55.000 10.83 0.00 35.78 2.41
4375 6544 4.395959 TCGGTGACAGGGTATAATCAAC 57.604 45.455 0.00 0.00 0.00 3.18
4412 6581 4.900154 CAGTTCCGCTGTCTCCTC 57.100 61.111 0.00 0.00 40.27 3.71
4414 6583 0.389166 CAGTTCCGCTGTCTCCTCAC 60.389 60.000 0.00 0.00 40.27 3.51
4415 6584 1.079750 GTTCCGCTGTCTCCTCACC 60.080 63.158 0.00 0.00 0.00 4.02
4416 6585 1.533033 TTCCGCTGTCTCCTCACCA 60.533 57.895 0.00 0.00 0.00 4.17
4417 6586 1.816863 TTCCGCTGTCTCCTCACCAC 61.817 60.000 0.00 0.00 0.00 4.16
4418 6587 2.574018 CCGCTGTCTCCTCACCACA 61.574 63.158 0.00 0.00 0.00 4.17
4419 6588 1.593787 CGCTGTCTCCTCACCACAT 59.406 57.895 0.00 0.00 0.00 3.21
4423 6592 2.697751 GCTGTCTCCTCACCACATCTAT 59.302 50.000 0.00 0.00 0.00 1.98
4424 6593 3.891977 GCTGTCTCCTCACCACATCTATA 59.108 47.826 0.00 0.00 0.00 1.31
4425 6594 4.261825 GCTGTCTCCTCACCACATCTATAC 60.262 50.000 0.00 0.00 0.00 1.47
4445 6616 9.750783 TCTATACCATAATCTAGAGGTAACACC 57.249 37.037 11.47 0.00 39.80 4.16
4446 6617 5.786264 ACCATAATCTAGAGGTAACACCG 57.214 43.478 0.00 0.00 44.90 4.94
4447 6618 4.038883 ACCATAATCTAGAGGTAACACCGC 59.961 45.833 0.00 0.00 44.90 5.68
4448 6619 4.038763 CCATAATCTAGAGGTAACACCGCA 59.961 45.833 0.00 0.00 44.90 5.69
4450 6621 3.802948 ATCTAGAGGTAACACCGCAAG 57.197 47.619 0.00 0.00 44.90 4.01
4452 6623 2.490903 TCTAGAGGTAACACCGCAAGTC 59.509 50.000 1.90 0.00 44.90 3.01
4454 6625 1.692519 AGAGGTAACACCGCAAGTCTT 59.307 47.619 1.90 0.00 44.90 3.01
4455 6626 2.895404 AGAGGTAACACCGCAAGTCTTA 59.105 45.455 1.90 0.00 44.90 2.10
4457 6628 2.366266 AGGTAACACCGCAAGTCTTACA 59.634 45.455 5.00 0.00 44.90 2.41
4458 6629 3.132925 GGTAACACCGCAAGTCTTACAA 58.867 45.455 5.00 0.00 0.00 2.41
4460 6631 2.319136 ACACCGCAAGTCTTACAACA 57.681 45.000 0.00 0.00 0.00 3.33
4462 6633 2.548057 ACACCGCAAGTCTTACAACATG 59.452 45.455 0.00 0.00 0.00 3.21
4463 6634 1.535462 ACCGCAAGTCTTACAACATGC 59.465 47.619 0.00 0.00 39.74 4.06
4465 6636 1.606606 GCAAGTCTTACAACATGCGC 58.393 50.000 0.00 0.00 34.62 6.09
4466 6637 1.869503 CAAGTCTTACAACATGCGCG 58.130 50.000 0.00 0.00 0.00 6.86
4467 6638 0.796312 AAGTCTTACAACATGCGCGG 59.204 50.000 8.83 0.00 0.00 6.46
4468 6639 0.320421 AGTCTTACAACATGCGCGGT 60.320 50.000 8.83 0.00 0.00 5.68
4469 6640 0.094730 GTCTTACAACATGCGCGGTC 59.905 55.000 8.83 0.00 0.00 4.79
4470 6641 0.319986 TCTTACAACATGCGCGGTCA 60.320 50.000 8.83 0.00 0.00 4.02
4471 6642 0.515127 CTTACAACATGCGCGGTCAA 59.485 50.000 8.83 0.00 0.00 3.18
4473 6644 1.160989 TACAACATGCGCGGTCAATT 58.839 45.000 8.83 0.00 0.00 2.32
4474 6645 0.313672 ACAACATGCGCGGTCAATTT 59.686 45.000 8.83 0.00 0.00 1.82
4475 6646 0.709467 CAACATGCGCGGTCAATTTG 59.291 50.000 8.83 2.49 0.00 2.32
4476 6647 0.595588 AACATGCGCGGTCAATTTGA 59.404 45.000 8.83 0.00 0.00 2.69
4477 6648 0.810648 ACATGCGCGGTCAATTTGAT 59.189 45.000 8.83 0.00 0.00 2.57
4479 6650 0.526096 ATGCGCGGTCAATTTGATGC 60.526 50.000 8.83 13.55 0.00 3.91
4480 6651 1.154054 GCGCGGTCAATTTGATGCA 60.154 52.632 19.87 0.00 32.43 3.96
4481 6652 0.526096 GCGCGGTCAATTTGATGCAT 60.526 50.000 19.87 0.00 32.43 3.96
4484 6655 3.364864 GCGCGGTCAATTTGATGCATATA 60.365 43.478 19.87 0.00 32.43 0.86
4485 6656 4.782156 CGCGGTCAATTTGATGCATATAA 58.218 39.130 19.87 0.00 32.43 0.98
4486 6657 5.211454 CGCGGTCAATTTGATGCATATAAA 58.789 37.500 19.87 5.06 32.43 1.40
4487 6658 5.115472 CGCGGTCAATTTGATGCATATAAAC 59.885 40.000 19.87 0.00 32.43 2.01
4488 6659 6.208644 GCGGTCAATTTGATGCATATAAACT 58.791 36.000 16.91 0.00 32.92 2.66
4489 6660 6.697019 GCGGTCAATTTGATGCATATAAACTT 59.303 34.615 16.91 0.00 32.92 2.66
4511 6682 8.281212 ACTTGTAAAATACATGATTCCAGTCC 57.719 34.615 0.00 0.00 38.68 3.85
4512 6683 8.109634 ACTTGTAAAATACATGATTCCAGTCCT 58.890 33.333 0.00 0.00 38.68 3.85
4513 6684 8.506168 TTGTAAAATACATGATTCCAGTCCTC 57.494 34.615 0.00 0.00 38.68 3.71
4514 6685 7.629157 TGTAAAATACATGATTCCAGTCCTCA 58.371 34.615 0.00 0.00 32.89 3.86
4515 6686 8.106462 TGTAAAATACATGATTCCAGTCCTCAA 58.894 33.333 0.00 0.00 32.89 3.02
4516 6687 8.956426 GTAAAATACATGATTCCAGTCCTCAAA 58.044 33.333 0.00 0.00 0.00 2.69
4517 6688 7.396540 AAATACATGATTCCAGTCCTCAAAC 57.603 36.000 0.00 0.00 0.00 2.93
4518 6689 4.647564 ACATGATTCCAGTCCTCAAACT 57.352 40.909 0.00 0.00 0.00 2.66
4519 6690 4.990526 ACATGATTCCAGTCCTCAAACTT 58.009 39.130 0.00 0.00 0.00 2.66
4520 6691 4.763793 ACATGATTCCAGTCCTCAAACTTG 59.236 41.667 0.00 0.00 0.00 3.16
4521 6692 4.437682 TGATTCCAGTCCTCAAACTTGT 57.562 40.909 0.00 0.00 0.00 3.16
4522 6693 5.560722 TGATTCCAGTCCTCAAACTTGTA 57.439 39.130 0.00 0.00 0.00 2.41
4528 6699 4.152402 CCAGTCCTCAAACTTGTATGAACG 59.848 45.833 0.00 0.00 0.00 3.95
4529 6700 4.750098 CAGTCCTCAAACTTGTATGAACGT 59.250 41.667 0.00 0.00 0.00 3.99
4531 6702 3.496884 TCCTCAAACTTGTATGAACGTGC 59.503 43.478 0.00 0.00 0.00 5.34
4532 6703 3.249799 CCTCAAACTTGTATGAACGTGCA 59.750 43.478 0.00 0.00 0.00 4.57
4534 6705 5.236655 TCAAACTTGTATGAACGTGCAAA 57.763 34.783 0.00 0.00 0.00 3.68
4535 6706 5.826586 TCAAACTTGTATGAACGTGCAAAT 58.173 33.333 0.00 0.00 0.00 2.32
4536 6707 6.960468 TCAAACTTGTATGAACGTGCAAATA 58.040 32.000 0.00 0.00 0.00 1.40
4537 6708 6.853872 TCAAACTTGTATGAACGTGCAAATAC 59.146 34.615 0.00 0.00 0.00 1.89
4542 6713 4.928020 TGTATGAACGTGCAAATACGGTAA 59.072 37.500 0.00 0.00 45.22 2.85
4543 6714 3.791993 TGAACGTGCAAATACGGTAAC 57.208 42.857 0.00 0.00 45.22 2.50
4544 6715 3.129109 TGAACGTGCAAATACGGTAACA 58.871 40.909 0.00 0.00 45.22 2.41
4547 6718 5.148568 GAACGTGCAAATACGGTAACAATT 58.851 37.500 3.29 0.00 45.22 2.32
4549 6720 4.713806 CGTGCAAATACGGTAACAATTCA 58.286 39.130 0.00 0.00 40.22 2.57
4551 6722 4.557301 GTGCAAATACGGTAACAATTCAGC 59.443 41.667 0.00 0.00 0.00 4.26
4552 6723 4.457603 TGCAAATACGGTAACAATTCAGCT 59.542 37.500 0.00 0.00 0.00 4.24
4554 6725 5.331902 CAAATACGGTAACAATTCAGCTGG 58.668 41.667 15.13 0.00 0.00 4.85
4555 6726 1.165270 ACGGTAACAATTCAGCTGGC 58.835 50.000 15.13 0.00 0.00 4.85
4556 6727 0.451783 CGGTAACAATTCAGCTGGCC 59.548 55.000 15.13 0.00 0.00 5.36
4557 6728 1.544724 GGTAACAATTCAGCTGGCCA 58.455 50.000 15.13 4.71 0.00 5.36
4558 6729 1.892474 GGTAACAATTCAGCTGGCCAA 59.108 47.619 15.13 0.57 0.00 4.52
4559 6730 2.094545 GGTAACAATTCAGCTGGCCAAG 60.095 50.000 15.13 1.85 0.00 3.61
4560 6731 0.971386 AACAATTCAGCTGGCCAAGG 59.029 50.000 15.13 0.00 0.00 3.61
4561 6732 1.217244 CAATTCAGCTGGCCAAGGC 59.783 57.895 15.13 8.11 41.06 4.35
4571 6742 3.312718 GCCAAGGCCCATTGTGCA 61.313 61.111 0.00 0.00 34.56 4.57
4572 6743 2.881528 GCCAAGGCCCATTGTGCAA 61.882 57.895 0.00 0.00 34.56 4.08
4574 6745 0.320946 CCAAGGCCCATTGTGCAAAG 60.321 55.000 0.00 0.00 0.00 2.77
4575 6746 0.680618 CAAGGCCCATTGTGCAAAGA 59.319 50.000 0.00 0.00 0.00 2.52
4576 6747 0.971386 AAGGCCCATTGTGCAAAGAG 59.029 50.000 0.00 0.00 0.00 2.85
4577 6748 0.178953 AGGCCCATTGTGCAAAGAGT 60.179 50.000 0.00 0.00 0.00 3.24
4578 6749 0.244721 GGCCCATTGTGCAAAGAGTC 59.755 55.000 0.00 0.00 0.00 3.36
4579 6750 1.251251 GCCCATTGTGCAAAGAGTCT 58.749 50.000 0.00 0.00 0.00 3.24
4580 6751 1.068055 GCCCATTGTGCAAAGAGTCTG 60.068 52.381 0.00 0.00 0.00 3.51
4581 6752 1.068055 CCCATTGTGCAAAGAGTCTGC 60.068 52.381 0.00 0.00 40.35 4.26
4583 6754 2.295349 CCATTGTGCAAAGAGTCTGCTT 59.705 45.455 6.00 0.00 40.59 3.91
4584 6755 3.503363 CCATTGTGCAAAGAGTCTGCTTA 59.497 43.478 6.00 0.00 40.59 3.09
4585 6756 4.157289 CCATTGTGCAAAGAGTCTGCTTAT 59.843 41.667 6.00 0.00 40.59 1.73
4587 6758 5.772825 TTGTGCAAAGAGTCTGCTTATTT 57.227 34.783 6.00 0.00 40.59 1.40
4588 6759 5.112220 TGTGCAAAGAGTCTGCTTATTTG 57.888 39.130 6.00 1.46 40.59 2.32
4589 6760 4.022935 TGTGCAAAGAGTCTGCTTATTTGG 60.023 41.667 6.00 0.00 40.59 3.28
4590 6761 3.057315 TGCAAAGAGTCTGCTTATTTGGC 60.057 43.478 6.00 0.00 40.59 4.52
4591 6762 3.751621 CAAAGAGTCTGCTTATTTGGCG 58.248 45.455 0.00 0.00 32.61 5.69
4617 6788 1.207329 GAGTTTGGACGGCTGATAGGT 59.793 52.381 0.00 0.00 0.00 3.08
4700 7719 2.089980 GCAGCACACCTGATCTTCAAT 58.910 47.619 0.00 0.00 44.64 2.57
4705 7724 3.503363 GCACACCTGATCTTCAATTGTCA 59.497 43.478 5.13 0.81 0.00 3.58
4725 7744 3.440173 TCATTTCTCTGTTCGGATTTGGC 59.560 43.478 0.00 0.00 0.00 4.52
4737 7776 0.101219 GATTTGGCATGCGGTCTTCC 59.899 55.000 12.44 0.00 0.00 3.46
4744 7783 3.721370 ATGCGGTCTTCCCATGGCC 62.721 63.158 6.09 0.00 0.00 5.36
4766 7805 2.203209 CTTGCTATCCCCACGGCC 60.203 66.667 0.00 0.00 0.00 6.13
4967 8963 6.568462 GCATCAAAGAGGAAGTTTCGATTTGA 60.568 38.462 15.13 15.13 37.64 2.69
5018 9014 4.310357 TGTAATGCCGCGAGAGTAATTA 57.690 40.909 8.23 0.00 0.00 1.40
5148 9686 0.038618 GGTGATTCAAACCGGCAACC 60.039 55.000 0.00 0.00 0.00 3.77
5181 9719 1.614996 TATGTGTGCAAACCACCCAG 58.385 50.000 4.11 0.00 44.01 4.45
5182 9720 1.747325 ATGTGTGCAAACCACCCAGC 61.747 55.000 4.11 0.00 44.01 4.85
5184 9722 0.821711 GTGTGCAAACCACCCAGCTA 60.822 55.000 0.00 0.00 44.01 3.32
5185 9723 0.537143 TGTGCAAACCACCCAGCTAG 60.537 55.000 0.00 0.00 44.01 3.42
5186 9724 0.250727 GTGCAAACCACCCAGCTAGA 60.251 55.000 0.00 0.00 38.55 2.43
5187 9725 0.250727 TGCAAACCACCCAGCTAGAC 60.251 55.000 0.00 0.00 0.00 2.59
5188 9726 1.298859 GCAAACCACCCAGCTAGACG 61.299 60.000 0.00 0.00 0.00 4.18
5189 9727 0.034896 CAAACCACCCAGCTAGACGT 59.965 55.000 0.00 0.00 0.00 4.34
5190 9728 0.320697 AAACCACCCAGCTAGACGTC 59.679 55.000 7.70 7.70 0.00 4.34
5191 9729 0.542232 AACCACCCAGCTAGACGTCT 60.542 55.000 23.66 23.66 0.00 4.18
5192 9730 0.966370 ACCACCCAGCTAGACGTCTC 60.966 60.000 23.89 8.95 0.00 3.36
5312 9850 9.689976 ATCAACAACATATTTGTTTGAATTCGA 57.310 25.926 7.28 0.00 43.57 3.71
5313 9851 9.521503 TCAACAACATATTTGTTTGAATTCGAA 57.478 25.926 0.00 0.00 43.57 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.939764 AAAAAGAAAAGAAACAGAGGCCT 57.060 34.783 3.86 3.86 0.00 5.19
22 23 5.887754 ACAGAGGCCTCCACTTTATAAAAA 58.112 37.500 29.54 0.00 0.00 1.94
23 24 5.514500 ACAGAGGCCTCCACTTTATAAAA 57.486 39.130 29.54 0.00 0.00 1.52
24 25 5.514500 AACAGAGGCCTCCACTTTATAAA 57.486 39.130 29.54 0.00 0.00 1.40
25 26 5.250774 AGAAACAGAGGCCTCCACTTTATAA 59.749 40.000 29.54 0.00 0.00 0.98
26 27 4.783227 AGAAACAGAGGCCTCCACTTTATA 59.217 41.667 29.54 0.00 0.00 0.98
27 28 3.589288 AGAAACAGAGGCCTCCACTTTAT 59.411 43.478 29.54 17.12 0.00 1.40
28 29 2.979678 AGAAACAGAGGCCTCCACTTTA 59.020 45.455 29.54 0.00 0.00 1.85
29 30 1.777272 AGAAACAGAGGCCTCCACTTT 59.223 47.619 29.54 21.80 0.00 2.66
30 31 1.439543 AGAAACAGAGGCCTCCACTT 58.560 50.000 29.54 18.75 0.00 3.16
31 32 2.327325 TAGAAACAGAGGCCTCCACT 57.673 50.000 29.54 20.92 0.00 4.00
32 33 3.536570 GAATAGAAACAGAGGCCTCCAC 58.463 50.000 29.54 15.33 0.00 4.02
33 34 2.505819 GGAATAGAAACAGAGGCCTCCA 59.494 50.000 29.54 6.30 0.00 3.86
34 35 2.505819 TGGAATAGAAACAGAGGCCTCC 59.494 50.000 29.54 13.50 0.00 4.30
93 94 2.543861 CGGCTGCTATACTGTACACCTG 60.544 54.545 0.00 0.00 0.00 4.00
105 106 3.197116 AGTTTTACCACTACGGCTGCTAT 59.803 43.478 0.00 0.00 39.03 2.97
151 425 3.797256 GCACGCGTTCTATCATACTTCTT 59.203 43.478 10.22 0.00 0.00 2.52
152 426 3.372954 GCACGCGTTCTATCATACTTCT 58.627 45.455 10.22 0.00 0.00 2.85
154 428 2.470821 GGCACGCGTTCTATCATACTT 58.529 47.619 10.22 0.00 0.00 2.24
174 448 4.088762 AAGTTCATGCGCACGCCG 62.089 61.111 14.90 1.10 41.09 6.46
175 449 2.502510 CAAGTTCATGCGCACGCC 60.503 61.111 14.90 0.23 41.09 5.68
176 450 2.456594 TTCCAAGTTCATGCGCACGC 62.457 55.000 14.90 8.33 42.35 5.34
177 451 0.040514 TTTCCAAGTTCATGCGCACG 60.041 50.000 14.90 3.71 0.00 5.34
178 452 2.053627 CTTTTCCAAGTTCATGCGCAC 58.946 47.619 14.90 0.00 0.00 5.34
179 453 1.000385 CCTTTTCCAAGTTCATGCGCA 60.000 47.619 14.96 14.96 0.00 6.09
180 454 1.000274 ACCTTTTCCAAGTTCATGCGC 60.000 47.619 0.00 0.00 0.00 6.09
181 455 4.082787 ACATACCTTTTCCAAGTTCATGCG 60.083 41.667 0.00 0.00 0.00 4.73
227 501 2.017049 CCATCGAGTCCAATCCAAACC 58.983 52.381 0.00 0.00 0.00 3.27
229 503 1.633432 ACCCATCGAGTCCAATCCAAA 59.367 47.619 0.00 0.00 0.00 3.28
310 584 1.825622 GCCAGCAAGGTATGGGAGC 60.826 63.158 0.00 0.00 40.61 4.70
373 647 0.975556 TTAGATGCGAGGACCTGCCA 60.976 55.000 0.00 0.00 40.02 4.92
374 648 0.394565 ATTAGATGCGAGGACCTGCC 59.605 55.000 0.00 0.00 0.00 4.85
375 649 1.069204 TGATTAGATGCGAGGACCTGC 59.931 52.381 0.00 3.65 0.00 4.85
460 861 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
462 863 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
464 865 1.479323 TGAGTAATTCCGAACGGAGGG 59.521 52.381 15.34 0.00 46.06 4.30
465 866 2.953466 TGAGTAATTCCGAACGGAGG 57.047 50.000 15.34 0.00 46.06 4.30
466 867 4.430007 TGAATGAGTAATTCCGAACGGAG 58.570 43.478 15.34 0.00 46.06 4.63
467 868 4.459390 TGAATGAGTAATTCCGAACGGA 57.541 40.909 12.04 12.04 43.61 4.69
468 869 5.539582 TTTGAATGAGTAATTCCGAACGG 57.460 39.130 6.94 6.94 43.61 4.44
516 917 8.928448 ACTTGTCATATGGATGTATCTACAACT 58.072 33.333 2.13 0.00 39.99 3.16
524 925 9.996554 TCGAAATTACTTGTCATATGGATGTAT 57.003 29.630 2.13 0.00 34.41 2.29
525 926 9.825109 TTCGAAATTACTTGTCATATGGATGTA 57.175 29.630 2.13 0.92 34.41 2.29
526 927 8.612619 GTTCGAAATTACTTGTCATATGGATGT 58.387 33.333 0.00 1.81 34.41 3.06
527 928 7.793888 CGTTCGAAATTACTTGTCATATGGATG 59.206 37.037 0.00 0.00 0.00 3.51
528 929 7.042051 CCGTTCGAAATTACTTGTCATATGGAT 60.042 37.037 0.00 0.00 0.00 3.41
529 930 6.256975 CCGTTCGAAATTACTTGTCATATGGA 59.743 38.462 0.00 0.00 0.00 3.41
530 931 6.256975 TCCGTTCGAAATTACTTGTCATATGG 59.743 38.462 0.00 0.00 0.00 2.74
531 932 7.229228 TCCGTTCGAAATTACTTGTCATATG 57.771 36.000 0.00 0.00 0.00 1.78
532 933 6.479001 CCTCCGTTCGAAATTACTTGTCATAT 59.521 38.462 0.00 0.00 0.00 1.78
533 934 5.808540 CCTCCGTTCGAAATTACTTGTCATA 59.191 40.000 0.00 0.00 0.00 2.15
534 935 4.630069 CCTCCGTTCGAAATTACTTGTCAT 59.370 41.667 0.00 0.00 0.00 3.06
535 936 3.991773 CCTCCGTTCGAAATTACTTGTCA 59.008 43.478 0.00 0.00 0.00 3.58
536 937 4.240096 TCCTCCGTTCGAAATTACTTGTC 58.760 43.478 0.00 0.00 0.00 3.18
537 938 4.261578 TCCTCCGTTCGAAATTACTTGT 57.738 40.909 0.00 0.00 0.00 3.16
538 939 4.689345 ACTTCCTCCGTTCGAAATTACTTG 59.311 41.667 0.00 0.00 0.00 3.16
539 940 4.891260 ACTTCCTCCGTTCGAAATTACTT 58.109 39.130 0.00 0.00 0.00 2.24
540 941 4.532314 ACTTCCTCCGTTCGAAATTACT 57.468 40.909 0.00 0.00 0.00 2.24
541 942 5.405797 AGTACTTCCTCCGTTCGAAATTAC 58.594 41.667 0.00 0.00 0.00 1.89
542 943 5.649782 AGTACTTCCTCCGTTCGAAATTA 57.350 39.130 0.00 0.00 0.00 1.40
543 944 4.532314 AGTACTTCCTCCGTTCGAAATT 57.468 40.909 0.00 0.00 0.00 1.82
544 945 5.649782 TTAGTACTTCCTCCGTTCGAAAT 57.350 39.130 0.00 0.00 0.00 2.17
545 946 5.649782 ATTAGTACTTCCTCCGTTCGAAA 57.350 39.130 0.00 0.00 0.00 3.46
546 947 5.649782 AATTAGTACTTCCTCCGTTCGAA 57.350 39.130 0.00 0.00 0.00 3.71
547 948 5.649782 AAATTAGTACTTCCTCCGTTCGA 57.350 39.130 0.00 0.00 0.00 3.71
548 949 5.445540 GCAAAATTAGTACTTCCTCCGTTCG 60.446 44.000 0.00 0.00 0.00 3.95
549 950 5.445540 CGCAAAATTAGTACTTCCTCCGTTC 60.446 44.000 0.00 0.00 0.00 3.95
550 951 4.390909 CGCAAAATTAGTACTTCCTCCGTT 59.609 41.667 0.00 0.00 0.00 4.44
551 952 3.930848 CGCAAAATTAGTACTTCCTCCGT 59.069 43.478 0.00 0.00 0.00 4.69
552 953 3.308866 CCGCAAAATTAGTACTTCCTCCG 59.691 47.826 0.00 0.00 0.00 4.63
553 954 4.510571 TCCGCAAAATTAGTACTTCCTCC 58.489 43.478 0.00 0.00 0.00 4.30
554 955 5.504173 GCATCCGCAAAATTAGTACTTCCTC 60.504 44.000 0.00 0.00 38.36 3.71
555 956 4.335594 GCATCCGCAAAATTAGTACTTCCT 59.664 41.667 0.00 0.00 38.36 3.36
556 957 4.598062 GCATCCGCAAAATTAGTACTTCC 58.402 43.478 0.00 0.00 38.36 3.46
572 973 1.659233 TGCACTGGTTTTGCATCCG 59.341 52.632 0.00 0.00 45.06 4.18
591 992 4.013728 TGCACTGGTTTTAAGTTGAGTGT 58.986 39.130 0.00 0.00 34.57 3.55
636 1419 5.249420 AGAGGGACATAAAAGTTTCAGCTC 58.751 41.667 0.00 0.00 0.00 4.09
660 1447 6.475076 GTGCAGATAGATACACTTGAGACTTG 59.525 42.308 0.00 0.00 0.00 3.16
668 1455 5.302059 ACCATACGTGCAGATAGATACACTT 59.698 40.000 0.00 0.00 0.00 3.16
682 1469 1.024271 TCTACCGGTACCATACGTGC 58.976 55.000 11.16 0.00 0.00 5.34
745 1537 5.221303 CCTTTCCCTATACGTAATCGGAACA 60.221 44.000 16.06 9.53 41.85 3.18
775 1606 2.659897 GTATGAGAGCCGCTGCCG 60.660 66.667 0.00 0.00 38.69 5.69
776 1607 2.280457 GGTATGAGAGCCGCTGCC 60.280 66.667 0.00 0.00 38.69 4.85
777 1608 2.280457 GGGTATGAGAGCCGCTGC 60.280 66.667 0.00 0.00 35.56 5.25
794 1625 1.228510 GCAAGAATCCAGGAGGGGG 59.771 63.158 0.00 0.00 37.22 5.40
795 1626 1.153086 CGCAAGAATCCAGGAGGGG 60.153 63.158 0.00 0.00 43.02 4.79
796 1627 4.547859 CGCAAGAATCCAGGAGGG 57.452 61.111 0.00 0.00 43.02 4.30
918 1781 3.317430 GGGTATACAGGTCGTACAAGGAG 59.683 52.174 5.01 0.00 31.27 3.69
921 1784 3.698040 ACAGGGTATACAGGTCGTACAAG 59.302 47.826 5.01 0.00 31.27 3.16
954 1820 3.685550 GCTGGGATATATATGGTGGTGCC 60.686 52.174 0.00 0.00 37.90 5.01
1178 2068 7.437748 TGAAGACGAAGAAGAAGAAGAGAAAT 58.562 34.615 0.00 0.00 0.00 2.17
1363 2371 7.149569 TGGACTGCTTGATTCTTTAATTCAG 57.850 36.000 0.00 0.00 0.00 3.02
1369 2377 7.114754 AGATTCATGGACTGCTTGATTCTTTA 58.885 34.615 0.00 0.00 30.12 1.85
1372 2380 5.113446 AGATTCATGGACTGCTTGATTCT 57.887 39.130 0.00 5.52 0.00 2.40
1373 2381 5.579718 CAAGATTCATGGACTGCTTGATTC 58.420 41.667 7.10 2.10 35.89 2.52
1383 2391 4.371786 TCGTCTATGCAAGATTCATGGAC 58.628 43.478 8.73 8.73 44.11 4.02
1406 2414 9.764363 GCCAGATTGAATCATCGGTATATATAA 57.236 33.333 8.03 0.00 0.00 0.98
1407 2415 8.923270 TGCCAGATTGAATCATCGGTATATATA 58.077 33.333 8.03 0.00 0.00 0.86
1411 2422 5.482163 TGCCAGATTGAATCATCGGTATA 57.518 39.130 8.03 0.00 0.00 1.47
1412 2423 4.356405 TGCCAGATTGAATCATCGGTAT 57.644 40.909 8.03 0.00 0.00 2.73
1413 2424 3.836365 TGCCAGATTGAATCATCGGTA 57.164 42.857 8.03 1.84 0.00 4.02
1414 2425 2.715749 TGCCAGATTGAATCATCGGT 57.284 45.000 8.03 0.00 0.00 4.69
1415 2426 8.843885 ATATATATGCCAGATTGAATCATCGG 57.156 34.615 8.03 6.00 0.00 4.18
1439 2451 2.911484 CGCGCCCTGCAATGCATAT 61.911 57.895 8.91 0.00 46.97 1.78
1440 2452 3.585020 CGCGCCCTGCAATGCATA 61.585 61.111 8.91 0.00 46.97 3.14
1495 2507 2.788191 CTTGAGGTCCGTGTCCAGGC 62.788 65.000 0.00 0.00 0.00 4.85
1496 2508 1.293498 CTTGAGGTCCGTGTCCAGG 59.707 63.158 0.00 0.00 0.00 4.45
1559 2571 2.440253 ACAGGTTGGGTTGCTACTTACA 59.560 45.455 0.00 0.00 0.00 2.41
1573 2585 5.372373 AGGAAGAAGAAGAAGAACAGGTTG 58.628 41.667 0.00 0.00 0.00 3.77
1574 2586 5.616270 GAGGAAGAAGAAGAAGAACAGGTT 58.384 41.667 0.00 0.00 0.00 3.50
1575 2587 4.262249 CGAGGAAGAAGAAGAAGAACAGGT 60.262 45.833 0.00 0.00 0.00 4.00
1576 2588 4.241681 CGAGGAAGAAGAAGAAGAACAGG 58.758 47.826 0.00 0.00 0.00 4.00
1579 2591 3.915569 CGACGAGGAAGAAGAAGAAGAAC 59.084 47.826 0.00 0.00 0.00 3.01
1608 2620 4.096382 AGCAATCTCACAACTCAAAAACGT 59.904 37.500 0.00 0.00 0.00 3.99
1621 2656 1.386533 CCCATGTGGAGCAATCTCAC 58.613 55.000 0.00 0.00 41.13 3.51
1634 2669 2.727392 GCACCATGCATGCCCATGT 61.727 57.895 21.69 10.34 44.26 3.21
1644 2679 2.639327 GGGTTGTCCTGCACCATGC 61.639 63.158 0.00 0.00 45.29 4.06
1645 2680 1.978617 GGGGTTGTCCTGCACCATG 60.979 63.158 0.00 0.00 35.33 3.66
1666 2701 3.842925 GAAGCTGAACCCCGTGCCA 62.843 63.158 0.00 0.00 0.00 4.92
1751 2786 2.100916 GCCGGTAGAGCTTGATGAGTAA 59.899 50.000 1.90 0.00 0.00 2.24
1795 2830 2.782222 GGCCACGATGTAGAGCGGA 61.782 63.158 1.67 0.00 34.48 5.54
2004 3244 2.452813 CGGCGTGGCACAGTACATC 61.453 63.158 19.09 0.00 41.80 3.06
2023 3263 2.183300 GCCACACCTGCATGCATG 59.817 61.111 22.97 22.70 0.00 4.06
2024 3264 3.072468 GGCCACACCTGCATGCAT 61.072 61.111 22.97 3.95 34.51 3.96
2097 3340 2.549633 ATTCAGCAAGCACAATACGC 57.450 45.000 0.00 0.00 0.00 4.42
2162 3447 1.340017 CCCCATGACAACTGTACCCAG 60.340 57.143 0.00 0.00 44.68 4.45
2163 3448 0.695924 CCCCATGACAACTGTACCCA 59.304 55.000 0.00 0.00 0.00 4.51
2168 3453 2.440599 GGGCCCCATGACAACTGT 59.559 61.111 12.23 0.00 0.00 3.55
2305 3689 2.032030 CCATCGTCGTCAGTTGCTTTTT 60.032 45.455 0.00 0.00 0.00 1.94
2308 3692 0.670546 CCCATCGTCGTCAGTTGCTT 60.671 55.000 0.00 0.00 0.00 3.91
2310 3694 1.374252 ACCCATCGTCGTCAGTTGC 60.374 57.895 0.00 0.00 0.00 4.17
2508 3986 4.641396 TGCAATTACAAGTCAGCACTACT 58.359 39.130 0.00 0.00 30.14 2.57
2509 3987 5.327091 CATGCAATTACAAGTCAGCACTAC 58.673 41.667 0.00 0.00 34.54 2.73
2510 3988 4.395854 CCATGCAATTACAAGTCAGCACTA 59.604 41.667 0.00 0.00 34.54 2.74
2532 4013 3.897122 TTCTGCCACCCACCCACC 61.897 66.667 0.00 0.00 0.00 4.61
2533 4014 2.597510 GTTCTGCCACCCACCCAC 60.598 66.667 0.00 0.00 0.00 4.61
2534 4015 2.351924 GAAGTTCTGCCACCCACCCA 62.352 60.000 0.00 0.00 0.00 4.51
2535 4016 1.603739 GAAGTTCTGCCACCCACCC 60.604 63.158 0.00 0.00 0.00 4.61
2810 4305 2.403252 AATGGTGTAGCTAGTGGTGC 57.597 50.000 0.00 0.00 0.00 5.01
2831 4326 2.687425 GACGGAGGGAGTAGTTAGGAAC 59.313 54.545 0.00 0.00 0.00 3.62
2835 4330 1.064166 TGGGACGGAGGGAGTAGTTAG 60.064 57.143 0.00 0.00 0.00 2.34
2836 4331 1.002069 TGGGACGGAGGGAGTAGTTA 58.998 55.000 0.00 0.00 0.00 2.24
2837 4332 0.338814 ATGGGACGGAGGGAGTAGTT 59.661 55.000 0.00 0.00 0.00 2.24
2838 4333 1.229131 TATGGGACGGAGGGAGTAGT 58.771 55.000 0.00 0.00 0.00 2.73
2840 4335 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
2841 4336 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
2842 4337 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2843 4338 2.090943 ACTACATTATGGGACGGAGGGA 60.091 50.000 0.00 0.00 0.00 4.20
2845 4340 2.698797 ACACTACATTATGGGACGGAGG 59.301 50.000 0.00 0.00 0.00 4.30
2846 4341 3.383505 TGACACTACATTATGGGACGGAG 59.616 47.826 0.00 0.00 0.00 4.63
2847 4342 3.367321 TGACACTACATTATGGGACGGA 58.633 45.455 0.00 0.00 0.00 4.69
2871 4366 9.814899 CTCTCTGTCTCATAATGTAAGATGTTT 57.185 33.333 0.00 0.00 0.00 2.83
2872 4367 9.194972 TCTCTCTGTCTCATAATGTAAGATGTT 57.805 33.333 0.00 0.00 0.00 2.71
2873 4368 8.759481 TCTCTCTGTCTCATAATGTAAGATGT 57.241 34.615 0.00 0.00 0.00 3.06
2874 4369 8.849168 ACTCTCTCTGTCTCATAATGTAAGATG 58.151 37.037 0.00 0.00 0.00 2.90
2875 4370 8.995027 ACTCTCTCTGTCTCATAATGTAAGAT 57.005 34.615 0.00 0.00 0.00 2.40
2876 4371 9.554395 CTACTCTCTCTGTCTCATAATGTAAGA 57.446 37.037 0.00 0.00 0.00 2.10
2877 4372 9.337396 ACTACTCTCTCTGTCTCATAATGTAAG 57.663 37.037 0.00 0.00 0.00 2.34
2878 4373 9.688091 AACTACTCTCTCTGTCTCATAATGTAA 57.312 33.333 0.00 0.00 0.00 2.41
2879 4374 9.688091 AAACTACTCTCTCTGTCTCATAATGTA 57.312 33.333 0.00 0.00 0.00 2.29
2880 4375 8.588290 AAACTACTCTCTCTGTCTCATAATGT 57.412 34.615 0.00 0.00 0.00 2.71
2881 4376 8.681806 TGAAACTACTCTCTCTGTCTCATAATG 58.318 37.037 0.00 0.00 0.00 1.90
2882 4377 8.815565 TGAAACTACTCTCTCTGTCTCATAAT 57.184 34.615 0.00 0.00 0.00 1.28
2883 4378 7.885922 ACTGAAACTACTCTCTCTGTCTCATAA 59.114 37.037 0.00 0.00 0.00 1.90
2884 4379 7.335673 CACTGAAACTACTCTCTCTGTCTCATA 59.664 40.741 0.00 0.00 0.00 2.15
2885 4380 6.150976 CACTGAAACTACTCTCTCTGTCTCAT 59.849 42.308 0.00 0.00 0.00 2.90
2886 4381 5.471797 CACTGAAACTACTCTCTCTGTCTCA 59.528 44.000 0.00 0.00 0.00 3.27
2887 4382 5.619086 GCACTGAAACTACTCTCTCTGTCTC 60.619 48.000 0.00 0.00 0.00 3.36
2888 4383 4.217550 GCACTGAAACTACTCTCTCTGTCT 59.782 45.833 0.00 0.00 0.00 3.41
2889 4384 4.022762 TGCACTGAAACTACTCTCTCTGTC 60.023 45.833 0.00 0.00 0.00 3.51
2890 4385 3.891977 TGCACTGAAACTACTCTCTCTGT 59.108 43.478 0.00 0.00 0.00 3.41
2891 4386 4.484236 CTGCACTGAAACTACTCTCTCTG 58.516 47.826 0.00 0.00 0.00 3.35
2892 4387 3.056891 GCTGCACTGAAACTACTCTCTCT 60.057 47.826 0.00 0.00 0.00 3.10
2893 4388 3.056891 AGCTGCACTGAAACTACTCTCTC 60.057 47.826 1.02 0.00 0.00 3.20
2894 4389 2.896685 AGCTGCACTGAAACTACTCTCT 59.103 45.455 1.02 0.00 0.00 3.10
2895 4390 3.311486 AGCTGCACTGAAACTACTCTC 57.689 47.619 1.02 0.00 0.00 3.20
2896 4391 4.873746 TTAGCTGCACTGAAACTACTCT 57.126 40.909 1.02 0.00 0.00 3.24
2897 4392 4.331168 CCATTAGCTGCACTGAAACTACTC 59.669 45.833 1.02 0.00 0.00 2.59
2898 4393 4.020218 TCCATTAGCTGCACTGAAACTACT 60.020 41.667 1.02 0.00 0.00 2.57
2899 4394 4.253685 TCCATTAGCTGCACTGAAACTAC 58.746 43.478 1.02 0.00 0.00 2.73
2902 4397 3.181493 CCATCCATTAGCTGCACTGAAAC 60.181 47.826 1.02 0.00 0.00 2.78
2921 4416 4.599041 TCACAGCAGGTTAATTAAGCCAT 58.401 39.130 20.83 7.17 34.40 4.40
2923 4418 4.010349 ACTCACAGCAGGTTAATTAAGCC 58.990 43.478 20.83 13.99 34.40 4.35
2948 4444 0.030235 CAACCTGCATGCATCCATCG 59.970 55.000 22.97 8.20 0.00 3.84
2990 4490 0.248661 CGCTGTAGATGGTCACCTCG 60.249 60.000 0.00 0.00 0.00 4.63
3026 5009 2.266055 CAAGAGAGACGGTGGGGC 59.734 66.667 0.00 0.00 0.00 5.80
3059 5043 2.451990 CGCGCACGGATCAACATCA 61.452 57.895 8.75 0.00 34.97 3.07
3129 5141 3.307782 ACACTAGACGGTCAAAACAAACG 59.692 43.478 11.27 0.00 0.00 3.60
3130 5142 4.870221 ACACTAGACGGTCAAAACAAAC 57.130 40.909 11.27 0.00 0.00 2.93
3253 5266 4.510571 CAGTGAGTGATTGATCATCCACA 58.489 43.478 22.17 8.47 40.82 4.17
3277 5290 3.788766 GCGATGCGTTTGAGCGGT 61.789 61.111 0.00 0.00 40.67 5.68
3282 5295 1.660607 GAGATTCTGCGATGCGTTTGA 59.339 47.619 0.00 0.00 0.00 2.69
3315 5344 8.594687 GCAAGAACAAAACGCAATTTATCATAT 58.405 29.630 0.00 0.00 0.00 1.78
3325 5354 1.135141 AGCTGCAAGAACAAAACGCAA 60.135 42.857 1.02 0.00 34.07 4.85
3329 5358 2.755836 TCGAGCTGCAAGAACAAAAC 57.244 45.000 1.02 0.00 34.07 2.43
3419 5478 4.734854 GCAAAGACACACAAACACACATAG 59.265 41.667 0.00 0.00 0.00 2.23
3420 5479 4.156739 TGCAAAGACACACAAACACACATA 59.843 37.500 0.00 0.00 0.00 2.29
3422 5481 2.294512 TGCAAAGACACACAAACACACA 59.705 40.909 0.00 0.00 0.00 3.72
3423 5482 2.940147 TGCAAAGACACACAAACACAC 58.060 42.857 0.00 0.00 0.00 3.82
3642 5771 0.179113 AGCGCAAGTTTTGTGTTGGG 60.179 50.000 11.47 0.00 42.92 4.12
3694 5823 2.237643 TCACCCAACGCCAACAGTATAT 59.762 45.455 0.00 0.00 0.00 0.86
3695 5824 1.624312 TCACCCAACGCCAACAGTATA 59.376 47.619 0.00 0.00 0.00 1.47
3713 5844 2.232399 AGTTGCACATTCACATGCTCA 58.768 42.857 0.00 0.00 42.55 4.26
3715 5846 4.852134 TTAAGTTGCACATTCACATGCT 57.148 36.364 0.00 0.00 42.55 3.79
3716 5847 4.201647 GCATTAAGTTGCACATTCACATGC 60.202 41.667 0.00 0.00 42.31 4.06
3760 5893 0.174162 GTGATCCAAACAGCCATGGC 59.826 55.000 30.12 30.12 42.33 4.40
3761 5894 1.843368 AGTGATCCAAACAGCCATGG 58.157 50.000 7.63 7.63 38.09 3.66
3762 5895 3.346315 TGTAGTGATCCAAACAGCCATG 58.654 45.455 0.00 0.00 0.00 3.66
3763 5896 3.614092 CTGTAGTGATCCAAACAGCCAT 58.386 45.455 5.74 0.00 33.59 4.40
3764 5897 2.290260 CCTGTAGTGATCCAAACAGCCA 60.290 50.000 11.13 0.00 38.39 4.75
3765 5898 2.359900 CCTGTAGTGATCCAAACAGCC 58.640 52.381 11.13 0.00 38.39 4.85
3766 5899 1.740025 GCCTGTAGTGATCCAAACAGC 59.260 52.381 11.13 5.54 38.39 4.40
3767 5900 3.340814 AGCCTGTAGTGATCCAAACAG 57.659 47.619 10.09 10.09 39.22 3.16
3768 5901 3.072330 TCAAGCCTGTAGTGATCCAAACA 59.928 43.478 0.00 0.00 0.00 2.83
3769 5902 3.437049 GTCAAGCCTGTAGTGATCCAAAC 59.563 47.826 0.00 0.00 0.00 2.93
3770 5903 3.559171 GGTCAAGCCTGTAGTGATCCAAA 60.559 47.826 0.00 0.00 0.00 3.28
3771 5904 2.027192 GGTCAAGCCTGTAGTGATCCAA 60.027 50.000 0.00 0.00 0.00 3.53
3772 5905 1.555075 GGTCAAGCCTGTAGTGATCCA 59.445 52.381 0.00 0.00 0.00 3.41
3773 5906 2.317530 GGTCAAGCCTGTAGTGATCC 57.682 55.000 0.00 0.00 0.00 3.36
3792 5925 1.823610 TGCACACTCATCTCCAGAGAG 59.176 52.381 3.41 0.00 41.33 3.20
3793 5926 1.928868 TGCACACTCATCTCCAGAGA 58.071 50.000 0.00 0.00 42.37 3.10
3794 5927 2.983907 ATGCACACTCATCTCCAGAG 57.016 50.000 0.00 0.00 39.04 3.35
3795 5928 2.568509 TGAATGCACACTCATCTCCAGA 59.431 45.455 0.00 0.00 0.00 3.86
3802 5935 4.449131 CCACTAGATGAATGCACACTCAT 58.551 43.478 7.34 7.34 34.96 2.90
3803 5936 3.865446 CCACTAGATGAATGCACACTCA 58.135 45.455 0.00 0.00 0.00 3.41
3836 5969 6.458478 GCATGATGAGATCCTTGAGAAAACTG 60.458 42.308 0.00 0.00 0.00 3.16
3837 5970 5.589452 GCATGATGAGATCCTTGAGAAAACT 59.411 40.000 0.00 0.00 0.00 2.66
3838 5971 5.503683 CGCATGATGAGATCCTTGAGAAAAC 60.504 44.000 0.00 0.00 0.00 2.43
3840 5973 4.124970 CGCATGATGAGATCCTTGAGAAA 58.875 43.478 0.00 0.00 0.00 2.52
3841 5974 3.725490 CGCATGATGAGATCCTTGAGAA 58.275 45.455 0.00 0.00 0.00 2.87
3842 5975 2.547430 GCGCATGATGAGATCCTTGAGA 60.547 50.000 0.30 0.00 0.00 3.27
3843 5976 1.799403 GCGCATGATGAGATCCTTGAG 59.201 52.381 0.30 0.00 0.00 3.02
3844 5977 1.139455 TGCGCATGATGAGATCCTTGA 59.861 47.619 5.66 0.00 0.00 3.02
3845 5978 1.589803 TGCGCATGATGAGATCCTTG 58.410 50.000 5.66 0.00 0.00 3.61
3846 5979 2.152016 CATGCGCATGATGAGATCCTT 58.848 47.619 40.62 4.80 41.20 3.36
3847 5980 1.809684 CATGCGCATGATGAGATCCT 58.190 50.000 40.62 5.04 41.20 3.24
3848 5981 0.168348 GCATGCGCATGATGAGATCC 59.832 55.000 45.47 25.54 41.20 3.36
3849 5982 0.872388 TGCATGCGCATGATGAGATC 59.128 50.000 45.47 28.78 45.36 2.75
3850 5983 3.015516 TGCATGCGCATGATGAGAT 57.984 47.368 45.47 12.68 45.36 2.75
3862 5995 2.208431 GTGGTAGAGAGACATGCATGC 58.792 52.381 26.53 18.25 0.00 4.06
3869 6002 6.911250 TTTTCTATGTGTGGTAGAGAGACA 57.089 37.500 0.00 0.00 30.45 3.41
3870 6003 8.779354 AAATTTTCTATGTGTGGTAGAGAGAC 57.221 34.615 0.00 0.00 30.45 3.36
3893 6026 7.773224 ACAGGCAATGCATATACAGTACTAAAA 59.227 33.333 7.79 0.00 0.00 1.52
3902 6035 4.420522 TCTCACAGGCAATGCATATACA 57.579 40.909 7.79 0.00 0.00 2.29
3934 6067 5.557576 ATCTATCACTATTTCTGCCTGCA 57.442 39.130 0.00 0.00 0.00 4.41
4004 6137 1.376424 CAGTACACCTGCCTGCCTG 60.376 63.158 0.00 0.00 33.59 4.85
4005 6138 3.072476 CAGTACACCTGCCTGCCT 58.928 61.111 0.00 0.00 33.59 4.75
4035 6173 2.624838 CCAGCAATACCATGGACATTCC 59.375 50.000 21.47 7.68 36.09 3.01
4175 6319 1.526686 TCAGGCTGCTTGGTGTGTG 60.527 57.895 10.34 0.00 0.00 3.82
4209 6353 6.983890 TGAAAAGAAAAGGGAAAAAGGAATCG 59.016 34.615 0.00 0.00 0.00 3.34
4351 6520 5.623956 TGATTATACCCTGTCACCGAAAT 57.376 39.130 0.00 0.00 0.00 2.17
4408 6577 7.248976 AGATTATGGTATAGATGTGGTGAGGA 58.751 38.462 0.00 0.00 0.00 3.71
4410 6579 9.467796 TCTAGATTATGGTATAGATGTGGTGAG 57.532 37.037 0.00 0.00 0.00 3.51
4411 6580 9.467796 CTCTAGATTATGGTATAGATGTGGTGA 57.532 37.037 0.00 0.00 0.00 4.02
4412 6581 8.690884 CCTCTAGATTATGGTATAGATGTGGTG 58.309 40.741 0.00 0.00 0.00 4.17
4414 6583 8.830915 ACCTCTAGATTATGGTATAGATGTGG 57.169 38.462 0.00 0.00 0.00 4.17
4419 6588 9.750783 GGTGTTACCTCTAGATTATGGTATAGA 57.249 37.037 8.90 0.00 35.33 1.98
4423 6592 5.242393 GCGGTGTTACCTCTAGATTATGGTA 59.758 44.000 4.83 4.83 35.66 3.25
4424 6593 4.038883 GCGGTGTTACCTCTAGATTATGGT 59.961 45.833 6.63 6.63 35.66 3.55
4425 6594 4.038763 TGCGGTGTTACCTCTAGATTATGG 59.961 45.833 0.00 0.00 35.66 2.74
4442 6613 2.665519 GCATGTTGTAAGACTTGCGGTG 60.666 50.000 0.00 0.00 39.73 4.94
4446 6617 1.606606 GCGCATGTTGTAAGACTTGC 58.393 50.000 0.30 0.00 43.38 4.01
4447 6618 1.464023 CCGCGCATGTTGTAAGACTTG 60.464 52.381 8.75 0.00 0.00 3.16
4448 6619 0.796312 CCGCGCATGTTGTAAGACTT 59.204 50.000 8.75 0.00 0.00 3.01
4450 6621 0.094730 GACCGCGCATGTTGTAAGAC 59.905 55.000 8.75 0.00 0.00 3.01
4452 6623 0.515127 TTGACCGCGCATGTTGTAAG 59.485 50.000 8.75 0.00 0.00 2.34
4454 6625 1.160989 AATTGACCGCGCATGTTGTA 58.839 45.000 8.75 0.00 0.00 2.41
4455 6626 0.313672 AAATTGACCGCGCATGTTGT 59.686 45.000 8.75 0.00 0.00 3.32
4457 6628 0.595588 TCAAATTGACCGCGCATGTT 59.404 45.000 8.75 0.00 0.00 2.71
4458 6629 0.810648 ATCAAATTGACCGCGCATGT 59.189 45.000 8.75 3.08 0.00 3.21
4460 6631 0.526096 GCATCAAATTGACCGCGCAT 60.526 50.000 8.75 0.00 0.00 4.73
4462 6633 0.526096 ATGCATCAAATTGACCGCGC 60.526 50.000 0.00 0.00 32.53 6.86
4463 6634 2.753989 TATGCATCAAATTGACCGCG 57.246 45.000 0.19 0.00 32.53 6.46
4464 6635 6.208644 AGTTTATATGCATCAAATTGACCGC 58.791 36.000 0.19 11.09 0.00 5.68
4465 6636 7.701924 ACAAGTTTATATGCATCAAATTGACCG 59.298 33.333 22.81 0.00 31.22 4.79
4466 6637 8.931385 ACAAGTTTATATGCATCAAATTGACC 57.069 30.769 22.81 7.70 31.22 4.02
4485 6656 8.739972 GGACTGGAATCATGTATTTTACAAGTT 58.260 33.333 0.00 0.00 42.76 2.66
4486 6657 8.109634 AGGACTGGAATCATGTATTTTACAAGT 58.890 33.333 0.00 0.00 42.76 3.16
4487 6658 8.511604 AGGACTGGAATCATGTATTTTACAAG 57.488 34.615 0.00 0.00 42.76 3.16
4488 6659 8.106462 TGAGGACTGGAATCATGTATTTTACAA 58.894 33.333 0.00 0.00 42.76 2.41
4489 6660 7.629157 TGAGGACTGGAATCATGTATTTTACA 58.371 34.615 0.00 0.00 43.80 2.41
4492 6663 7.671398 AGTTTGAGGACTGGAATCATGTATTTT 59.329 33.333 0.00 0.00 0.00 1.82
4493 6664 7.177878 AGTTTGAGGACTGGAATCATGTATTT 58.822 34.615 0.00 0.00 0.00 1.40
4494 6665 6.725364 AGTTTGAGGACTGGAATCATGTATT 58.275 36.000 0.00 0.00 0.00 1.89
4495 6666 6.319048 AGTTTGAGGACTGGAATCATGTAT 57.681 37.500 0.00 0.00 0.00 2.29
4496 6667 5.762179 AGTTTGAGGACTGGAATCATGTA 57.238 39.130 0.00 0.00 0.00 2.29
4497 6668 4.647564 AGTTTGAGGACTGGAATCATGT 57.352 40.909 0.00 0.00 0.00 3.21
4499 6670 4.990526 ACAAGTTTGAGGACTGGAATCAT 58.009 39.130 0.00 0.00 0.00 2.45
4500 6671 4.437682 ACAAGTTTGAGGACTGGAATCA 57.562 40.909 0.00 0.00 0.00 2.57
4501 6672 6.173339 TCATACAAGTTTGAGGACTGGAATC 58.827 40.000 0.00 0.00 0.00 2.52
4502 6673 6.126863 TCATACAAGTTTGAGGACTGGAAT 57.873 37.500 0.00 0.00 0.00 3.01
4505 6676 4.152402 CGTTCATACAAGTTTGAGGACTGG 59.848 45.833 0.00 0.00 0.00 4.00
4506 6677 4.750098 ACGTTCATACAAGTTTGAGGACTG 59.250 41.667 0.00 0.00 0.00 3.51
4507 6678 4.750098 CACGTTCATACAAGTTTGAGGACT 59.250 41.667 0.00 0.00 0.00 3.85
4508 6679 4.610680 GCACGTTCATACAAGTTTGAGGAC 60.611 45.833 0.00 0.00 0.00 3.85
4510 6681 3.249799 TGCACGTTCATACAAGTTTGAGG 59.750 43.478 0.00 0.00 0.00 3.86
4511 6682 4.466567 TGCACGTTCATACAAGTTTGAG 57.533 40.909 0.00 0.00 0.00 3.02
4512 6683 4.884458 TTGCACGTTCATACAAGTTTGA 57.116 36.364 0.00 0.00 0.00 2.69
4513 6684 6.183359 CGTATTTGCACGTTCATACAAGTTTG 60.183 38.462 0.00 0.00 37.16 2.93
4514 6685 5.849081 CGTATTTGCACGTTCATACAAGTTT 59.151 36.000 0.00 0.00 37.16 2.66
4515 6686 5.379003 CGTATTTGCACGTTCATACAAGTT 58.621 37.500 0.00 0.00 37.16 2.66
4516 6687 4.142988 CCGTATTTGCACGTTCATACAAGT 60.143 41.667 0.00 0.00 40.31 3.16
4517 6688 4.142988 ACCGTATTTGCACGTTCATACAAG 60.143 41.667 0.00 0.00 40.31 3.16
4518 6689 3.747010 ACCGTATTTGCACGTTCATACAA 59.253 39.130 0.00 0.00 40.31 2.41
4519 6690 3.327626 ACCGTATTTGCACGTTCATACA 58.672 40.909 0.00 0.00 40.31 2.29
4520 6691 5.163972 TGTTACCGTATTTGCACGTTCATAC 60.164 40.000 0.00 0.00 40.31 2.39
4521 6692 4.928020 TGTTACCGTATTTGCACGTTCATA 59.072 37.500 0.00 0.00 40.31 2.15
4522 6693 3.747010 TGTTACCGTATTTGCACGTTCAT 59.253 39.130 0.00 0.00 40.31 2.57
4528 6699 4.557301 GCTGAATTGTTACCGTATTTGCAC 59.443 41.667 0.00 0.00 0.00 4.57
4529 6700 4.457603 AGCTGAATTGTTACCGTATTTGCA 59.542 37.500 0.00 0.00 0.00 4.08
4531 6702 5.331902 CCAGCTGAATTGTTACCGTATTTG 58.668 41.667 17.39 0.00 0.00 2.32
4532 6703 4.142469 GCCAGCTGAATTGTTACCGTATTT 60.142 41.667 17.39 0.00 0.00 1.40
4534 6705 2.943033 GCCAGCTGAATTGTTACCGTAT 59.057 45.455 17.39 0.00 0.00 3.06
4535 6706 2.352388 GCCAGCTGAATTGTTACCGTA 58.648 47.619 17.39 0.00 0.00 4.02
4536 6707 1.165270 GCCAGCTGAATTGTTACCGT 58.835 50.000 17.39 0.00 0.00 4.83
4537 6708 0.451783 GGCCAGCTGAATTGTTACCG 59.548 55.000 17.39 0.00 0.00 4.02
4538 6709 1.544724 TGGCCAGCTGAATTGTTACC 58.455 50.000 17.39 3.85 0.00 2.85
4539 6710 2.094545 CCTTGGCCAGCTGAATTGTTAC 60.095 50.000 17.39 0.00 0.00 2.50
4540 6711 2.170166 CCTTGGCCAGCTGAATTGTTA 58.830 47.619 17.39 0.00 0.00 2.41
4542 6713 1.538687 GCCTTGGCCAGCTGAATTGT 61.539 55.000 17.39 0.00 0.00 2.71
4543 6714 1.217244 GCCTTGGCCAGCTGAATTG 59.783 57.895 17.39 0.00 0.00 2.32
4544 6715 1.986210 GGCCTTGGCCAGCTGAATT 60.986 57.895 24.50 0.00 0.00 2.17
4554 6725 2.394565 TTTGCACAATGGGCCTTGGC 62.395 55.000 4.50 15.89 0.00 4.52
4555 6726 0.320946 CTTTGCACAATGGGCCTTGG 60.321 55.000 4.50 6.48 0.00 3.61
4556 6727 0.680618 TCTTTGCACAATGGGCCTTG 59.319 50.000 4.50 9.56 0.00 3.61
4557 6728 0.971386 CTCTTTGCACAATGGGCCTT 59.029 50.000 4.50 0.00 0.00 4.35
4558 6729 0.178953 ACTCTTTGCACAATGGGCCT 60.179 50.000 4.50 0.00 0.00 5.19
4559 6730 0.244721 GACTCTTTGCACAATGGGCC 59.755 55.000 4.50 0.00 0.00 5.80
4560 6731 1.068055 CAGACTCTTTGCACAATGGGC 60.068 52.381 0.00 0.00 0.00 5.36
4561 6732 1.068055 GCAGACTCTTTGCACAATGGG 60.068 52.381 0.00 0.00 41.17 4.00
4562 6733 1.884579 AGCAGACTCTTTGCACAATGG 59.115 47.619 0.00 0.00 43.92 3.16
4563 6734 3.637998 AAGCAGACTCTTTGCACAATG 57.362 42.857 0.00 0.00 43.92 2.82
4564 6735 5.972107 AATAAGCAGACTCTTTGCACAAT 57.028 34.783 0.00 0.00 43.92 2.71
4565 6736 5.507817 CCAAATAAGCAGACTCTTTGCACAA 60.508 40.000 0.00 0.00 43.92 3.33
4566 6737 4.022935 CCAAATAAGCAGACTCTTTGCACA 60.023 41.667 0.00 0.00 43.92 4.57
4567 6738 4.479619 CCAAATAAGCAGACTCTTTGCAC 58.520 43.478 0.00 0.00 43.92 4.57
4569 6740 3.505836 GCCAAATAAGCAGACTCTTTGC 58.494 45.455 0.00 0.00 41.83 3.68
4570 6741 3.751621 CGCCAAATAAGCAGACTCTTTG 58.248 45.455 0.00 0.00 32.35 2.77
4571 6742 2.162408 GCGCCAAATAAGCAGACTCTTT 59.838 45.455 0.00 0.00 0.00 2.52
4572 6743 1.740025 GCGCCAAATAAGCAGACTCTT 59.260 47.619 0.00 0.00 0.00 2.85
4574 6745 1.086696 TGCGCCAAATAAGCAGACTC 58.913 50.000 4.18 0.00 35.81 3.36
4575 6746 1.200020 GTTGCGCCAAATAAGCAGACT 59.800 47.619 4.18 0.00 42.19 3.24
4576 6747 1.068610 TGTTGCGCCAAATAAGCAGAC 60.069 47.619 4.18 0.00 42.19 3.51
4577 6748 1.199789 CTGTTGCGCCAAATAAGCAGA 59.800 47.619 4.18 0.00 42.19 4.26
4578 6749 1.199789 TCTGTTGCGCCAAATAAGCAG 59.800 47.619 4.18 2.42 42.19 4.24
4579 6750 1.199789 CTCTGTTGCGCCAAATAAGCA 59.800 47.619 4.18 0.00 39.33 3.91
4580 6751 1.200020 ACTCTGTTGCGCCAAATAAGC 59.800 47.619 4.18 0.00 0.00 3.09
4581 6752 3.559238 AACTCTGTTGCGCCAAATAAG 57.441 42.857 4.18 0.00 0.00 1.73
4583 6754 2.030363 CCAAACTCTGTTGCGCCAAATA 60.030 45.455 4.18 0.00 0.00 1.40
4584 6755 1.269726 CCAAACTCTGTTGCGCCAAAT 60.270 47.619 4.18 0.00 0.00 2.32
4585 6756 0.102120 CCAAACTCTGTTGCGCCAAA 59.898 50.000 4.18 0.00 0.00 3.28
4587 6758 1.153066 TCCAAACTCTGTTGCGCCA 60.153 52.632 4.18 0.00 0.00 5.69
4588 6759 1.282875 GTCCAAACTCTGTTGCGCC 59.717 57.895 4.18 0.00 0.00 6.53
4589 6760 1.082756 CGTCCAAACTCTGTTGCGC 60.083 57.895 0.00 0.00 0.00 6.09
4590 6761 1.569493 CCGTCCAAACTCTGTTGCG 59.431 57.895 0.00 0.00 0.00 4.85
4591 6762 1.166531 AGCCGTCCAAACTCTGTTGC 61.167 55.000 0.00 0.00 0.00 4.17
4617 6788 1.710244 TGGCCATCCTTTCCTCTGAAA 59.290 47.619 0.00 0.00 38.14 2.69
4700 7719 5.048782 CCAAATCCGAACAGAGAAATGACAA 60.049 40.000 0.00 0.00 0.00 3.18
4705 7724 3.420893 TGCCAAATCCGAACAGAGAAAT 58.579 40.909 0.00 0.00 0.00 2.17
4766 7805 2.521958 AATCGAACAGGAGCCACGGG 62.522 60.000 0.00 0.00 0.00 5.28
5018 9014 0.033366 AAGCGGCGGAAAAGCAAAAT 59.967 45.000 9.78 0.00 39.27 1.82
5117 9655 0.179181 GAATCACCACAGTGCGCATG 60.179 55.000 15.91 15.54 44.16 4.06
5148 9686 4.270808 TGCACACATAAAGATATCGCAGTG 59.729 41.667 12.18 12.18 0.00 3.66
5155 9693 5.127031 GGGTGGTTTGCACACATAAAGATAT 59.873 40.000 5.20 0.00 40.54 1.63
5181 9719 2.030185 TGTCCACAAAGAGACGTCTAGC 60.030 50.000 20.09 7.15 35.71 3.42
5182 9720 3.917329 TGTCCACAAAGAGACGTCTAG 57.083 47.619 20.09 11.34 35.71 2.43
5184 9722 3.536956 TTTGTCCACAAAGAGACGTCT 57.463 42.857 20.18 20.18 40.55 4.18
5276 9814 9.388506 ACAAATATGTTGTTGATTTGTCCAAAA 57.611 25.926 6.43 0.00 45.94 2.44
5277 9815 8.954950 ACAAATATGTTGTTGATTTGTCCAAA 57.045 26.923 6.43 0.00 45.94 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.