Multiple sequence alignment - TraesCS7B01G179500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G179500 chr7B 100.000 4872 0 0 1 4872 264066999 264062128 0.000000e+00 8997.0
1 TraesCS7B01G179500 chr7D 94.786 3778 99 35 539 4275 273831222 273834942 0.000000e+00 5795.0
2 TraesCS7B01G179500 chr7D 91.585 511 36 4 1 505 273830716 273831225 0.000000e+00 699.0
3 TraesCS7B01G179500 chr7D 90.500 200 4 5 4473 4664 273835022 273835214 2.910000e-62 250.0
4 TraesCS7B01G179500 chr7A 93.893 3750 103 50 577 4252 307235689 307239386 0.000000e+00 5541.0
5 TraesCS7B01G179500 chr7A 88.378 370 34 6 1 366 307078316 307078680 2.080000e-118 436.0
6 TraesCS7B01G179500 chr7A 95.620 137 6 0 4473 4609 307239481 307239617 2.280000e-53 220.0
7 TraesCS7B01G179500 chr7A 86.316 95 8 5 4475 4566 680536956 680537048 1.120000e-16 99.0
8 TraesCS7B01G179500 chr2D 85.646 209 16 2 4281 4475 613102379 613102171 1.780000e-49 207.0
9 TraesCS7B01G179500 chr2D 85.149 202 16 3 4281 4468 549131589 549131790 1.380000e-45 195.0
10 TraesCS7B01G179500 chr2D 91.429 140 12 0 4281 4420 549100454 549100593 4.980000e-45 193.0
11 TraesCS7B01G179500 chr6A 92.143 140 11 0 4281 4420 108072935 108073074 1.070000e-46 198.0
12 TraesCS7B01G179500 chr6A 82.653 196 33 1 281 475 584142754 584142949 6.480000e-39 172.0
13 TraesCS7B01G179500 chr2A 85.279 197 22 6 285 481 733529249 733529438 3.850000e-46 196.0
14 TraesCS7B01G179500 chr5D 84.615 208 18 1 4281 4474 349011034 349010827 1.380000e-45 195.0
15 TraesCS7B01G179500 chr5D 97.917 48 1 0 4422 4469 182855393 182855346 3.120000e-12 84.2
16 TraesCS7B01G179500 chr6B 91.429 140 11 1 4281 4420 85570233 85570095 1.790000e-44 191.0
17 TraesCS7B01G179500 chr5B 91.429 140 11 1 4281 4420 278205452 278205590 1.790000e-44 191.0
18 TraesCS7B01G179500 chr5B 91.429 140 11 1 4281 4420 387152200 387152338 1.790000e-44 191.0
19 TraesCS7B01G179500 chr5B 84.615 104 11 5 4475 4574 532851916 532852018 1.120000e-16 99.0
20 TraesCS7B01G179500 chr4B 91.429 140 11 1 4281 4420 565485160 565485022 1.790000e-44 191.0
21 TraesCS7B01G179500 chr4B 91.429 140 11 1 4281 4420 625859843 625859981 1.790000e-44 191.0
22 TraesCS7B01G179500 chr4A 84.264 197 30 1 285 481 675141659 675141464 1.790000e-44 191.0
23 TraesCS7B01G179500 chr4A 84.264 197 30 1 285 481 675163639 675163444 1.790000e-44 191.0
24 TraesCS7B01G179500 chr5A 81.818 209 22 9 4281 4474 150566193 150565986 1.400000e-35 161.0
25 TraesCS7B01G179500 chr3A 91.111 90 8 0 314 403 714737566 714737477 6.620000e-24 122.0
26 TraesCS7B01G179500 chr3A 87.379 103 13 0 323 425 715641448 715641346 8.570000e-23 119.0
27 TraesCS7B01G179500 chr3A 81.746 126 22 1 301 425 715637001 715636876 2.400000e-18 104.0
28 TraesCS7B01G179500 chr4D 97.917 48 1 0 4422 4469 312147901 312147948 3.120000e-12 84.2
29 TraesCS7B01G179500 chr4D 95.745 47 2 0 4422 4468 264744867 264744913 5.230000e-10 76.8
30 TraesCS7B01G179500 chr4D 95.745 47 2 0 4422 4468 441720839 441720885 5.230000e-10 76.8
31 TraesCS7B01G179500 chr6D 92.453 53 4 0 4422 4474 77234580 77234528 5.230000e-10 76.8
32 TraesCS7B01G179500 chr3D 95.745 47 2 0 4422 4468 168946673 168946719 5.230000e-10 76.8
33 TraesCS7B01G179500 chr3D 95.745 47 2 0 4422 4468 405667135 405667181 5.230000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G179500 chr7B 264062128 264066999 4871 True 8997.0 8997 100.000000 1 4872 1 chr7B.!!$R1 4871
1 TraesCS7B01G179500 chr7D 273830716 273835214 4498 False 2248.0 5795 92.290333 1 4664 3 chr7D.!!$F1 4663
2 TraesCS7B01G179500 chr7A 307235689 307239617 3928 False 2880.5 5541 94.756500 577 4609 2 chr7A.!!$F3 4032

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 383 0.033601 TGGCCAAACCACACAAGACT 60.034 50.000 0.61 0.0 46.36 3.24 F
1351 1389 0.177604 TTTGGGCTGTGCTTTTGTGG 59.822 50.000 0.00 0.0 0.00 4.17 F
1901 1947 1.134371 GCGCCTCAGGAGAAAGGTTAT 60.134 52.381 0.00 0.0 34.96 1.89 F
2152 2198 1.202428 GCCTGTATTGACCGTCTCTCC 60.202 57.143 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1528 1566 1.002900 CTCAACGAAGAAAAGGCGCAA 60.003 47.619 10.83 0.00 0.0 4.85 R
2390 2438 1.134401 AGCAACGATACAGGACCATGG 60.134 52.381 11.19 11.19 0.0 3.66 R
2902 2950 1.222113 GTCCCTAGAGTTGCCTGGC 59.778 63.158 12.87 12.87 0.0 4.85 R
3905 3963 2.484264 CCACTTCTCACGGATCAAAACC 59.516 50.000 0.00 0.00 0.0 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.458409 ACACGAGTTAGTATAGTTTTGGAGA 57.542 36.000 0.00 0.00 0.00 3.71
41 42 9.199982 CGAGTTAGTATAGTTTTGGAGAACAAA 57.800 33.333 0.00 0.00 46.82 2.83
81 86 8.973835 TTCGTCAAAATTAACATGGGAAATAC 57.026 30.769 0.00 0.00 0.00 1.89
98 103 6.238676 GGGAAATACTTTTAAAGATCTCGGCC 60.239 42.308 12.02 0.00 0.00 6.13
106 111 6.980051 TTTAAAGATCTCGGCCTAAGAAAC 57.020 37.500 8.60 6.62 0.00 2.78
115 120 5.642063 TCTCGGCCTAAGAAACTAAACAATG 59.358 40.000 0.00 0.00 0.00 2.82
206 212 3.094484 TGAACAAACAACCAACCTCCT 57.906 42.857 0.00 0.00 0.00 3.69
211 217 5.333299 ACAAACAACCAACCTCCTAAAAC 57.667 39.130 0.00 0.00 0.00 2.43
225 231 7.630082 ACCTCCTAAAACTTAGCACATATGAA 58.370 34.615 10.38 0.00 0.00 2.57
272 278 2.143876 ACACATAGGCCCCAAATGAC 57.856 50.000 0.00 0.00 0.00 3.06
279 285 2.730719 AGGCCCCAAATGACCCTATAT 58.269 47.619 0.00 0.00 0.00 0.86
280 286 3.071314 AGGCCCCAAATGACCCTATATT 58.929 45.455 0.00 0.00 0.00 1.28
282 288 4.863814 AGGCCCCAAATGACCCTATATTAT 59.136 41.667 0.00 0.00 0.00 1.28
288 294 9.025041 CCCCAAATGACCCTATATTATCTTTTC 57.975 37.037 0.00 0.00 0.00 2.29
296 302 9.961264 GACCCTATATTATCTTTTCTTTAGGGG 57.039 37.037 14.44 0.00 45.90 4.79
297 303 9.475013 ACCCTATATTATCTTTTCTTTAGGGGT 57.525 33.333 14.44 0.00 45.90 4.95
309 315 6.742559 TTCTTTAGGGGTTAGCCTATACTG 57.257 41.667 0.00 0.00 34.45 2.74
327 333 7.273598 CCTATACTGTATTGATCGAATTCCACG 59.726 40.741 5.52 0.00 0.00 4.94
377 383 0.033601 TGGCCAAACCACACAAGACT 60.034 50.000 0.61 0.00 46.36 3.24
378 384 1.111277 GGCCAAACCACACAAGACTT 58.889 50.000 0.00 0.00 38.86 3.01
397 403 5.298276 AGACTTCGTGGAGCTAGATTAAGAG 59.702 44.000 0.00 0.00 0.00 2.85
476 482 5.338365 ACTACAAGAATAAGCGGTAGAACG 58.662 41.667 0.00 0.00 35.99 3.95
500 506 3.891366 GCTGCAAATGACCCTATACCATT 59.109 43.478 0.00 0.00 32.46 3.16
502 508 5.163416 GCTGCAAATGACCCTATACCATTTT 60.163 40.000 0.00 0.00 38.13 1.82
503 509 6.630188 GCTGCAAATGACCCTATACCATTTTT 60.630 38.462 0.00 0.00 38.13 1.94
569 575 7.509546 AGATGAATGACCGTATACCATCTTTT 58.490 34.615 10.82 2.84 36.77 2.27
977 1010 4.221703 CGGAATCAGCAGATCTAGGGTTAT 59.778 45.833 0.00 0.00 31.90 1.89
1058 1094 1.133450 TCCTTATCTCTGTCTCCCCCG 60.133 57.143 0.00 0.00 0.00 5.73
1351 1389 0.177604 TTTGGGCTGTGCTTTTGTGG 59.822 50.000 0.00 0.00 0.00 4.17
1370 1408 4.134563 GTGGTATTTTGGACTGTCAGTGT 58.865 43.478 11.04 0.00 0.00 3.55
1436 1474 2.959507 TAGCATAACTTCTGCGCTCA 57.040 45.000 9.73 0.00 44.38 4.26
1507 1545 1.527034 TTGTCCATCTGCTGAGTTGC 58.473 50.000 0.00 0.00 0.00 4.17
1528 1566 8.780249 AGTTGCATACTTATTAGTCGTTTTGTT 58.220 29.630 0.00 0.00 35.78 2.83
1543 1581 1.833860 TTGTTTGCGCCTTTTCTTCG 58.166 45.000 4.18 0.00 0.00 3.79
1550 1588 1.398578 GCGCCTTTTCTTCGTTGAGTC 60.399 52.381 0.00 0.00 0.00 3.36
1633 1671 2.572209 TACACCTGTTGCCCCTAAAC 57.428 50.000 0.00 0.00 0.00 2.01
1636 1674 1.339929 CACCTGTTGCCCCTAAACAAC 59.660 52.381 0.00 0.00 45.06 3.32
1901 1947 1.134371 GCGCCTCAGGAGAAAGGTTAT 60.134 52.381 0.00 0.00 34.96 1.89
1985 2031 1.606737 GCTCACGAAGCCTTTGAGACT 60.607 52.381 9.77 0.00 45.92 3.24
2093 2139 7.950512 TGTTATTACCCATGAAATAGCCAATG 58.049 34.615 0.00 0.00 0.00 2.82
2114 2160 8.239314 CCAATGATGTTATGGATATGTTACAGC 58.761 37.037 0.00 0.00 36.27 4.40
2117 2163 6.423604 TGATGTTATGGATATGTTACAGCACG 59.576 38.462 0.00 0.00 28.32 5.34
2140 2186 3.152341 GCCATATCTGCTTGCCTGTATT 58.848 45.455 0.00 0.00 0.00 1.89
2152 2198 1.202428 GCCTGTATTGACCGTCTCTCC 60.202 57.143 0.00 0.00 0.00 3.71
2240 2288 4.020396 TCCAGTGGCAACGTAAATAAGGTA 60.020 41.667 3.51 0.00 42.51 3.08
2247 2295 5.390145 GGCAACGTAAATAAGGTACACTGTG 60.390 44.000 6.19 6.19 0.00 3.66
2333 2381 2.340210 TTTTACACCAGCTGAGCACA 57.660 45.000 17.39 0.00 0.00 4.57
2341 2389 1.467734 CCAGCTGAGCACAGATTGTTC 59.532 52.381 17.39 0.00 46.03 3.18
2390 2438 9.262358 GAAATATTAGTGTCTCCTGGTAATGTC 57.738 37.037 0.00 0.00 0.00 3.06
2402 2450 3.454447 CTGGTAATGTCCATGGTCCTGTA 59.546 47.826 12.58 0.00 36.84 2.74
2430 2478 3.260740 CTGCTTCAAAGTTTTGTTGGCA 58.739 40.909 14.95 14.95 39.18 4.92
2483 2531 6.454848 GCAGAGTACATTCATGAAGAAAGTCG 60.455 42.308 14.54 10.12 38.87 4.18
2558 2606 1.620819 CACTTACTCTGAGCCACCACT 59.379 52.381 4.19 0.00 0.00 4.00
2670 2718 2.743928 GAGCCAGCACAACCTCCG 60.744 66.667 0.00 0.00 0.00 4.63
2828 2876 3.801698 TCTGATGATGCAGCTAAGAACC 58.198 45.455 2.53 0.00 35.86 3.62
2853 2901 2.933834 CCCCACCTCCGTTCCCTT 60.934 66.667 0.00 0.00 0.00 3.95
2902 2950 3.070018 CTCACCCTACAACAGAAGCAAG 58.930 50.000 0.00 0.00 0.00 4.01
2975 3023 1.123077 TCTACGCAGAAGGCCATGAT 58.877 50.000 5.01 0.00 40.31 2.45
2991 3039 5.166398 GCCATGATGAAGAAGGTTTTTCTG 58.834 41.667 0.00 0.00 0.00 3.02
3036 3086 6.110033 ACATTTGTTTGTTTAAGTTCCCCAC 58.890 36.000 0.00 0.00 0.00 4.61
3233 3283 4.582869 TCTGATTCTGATTCACCACTTGG 58.417 43.478 0.00 0.00 42.17 3.61
3431 3481 7.475137 TTATATTGCTTAGGTTTGGCTTGTT 57.525 32.000 0.00 0.00 0.00 2.83
3435 3485 3.181480 TGCTTAGGTTTGGCTTGTTCAAC 60.181 43.478 0.00 0.00 0.00 3.18
3436 3486 3.068165 GCTTAGGTTTGGCTTGTTCAACT 59.932 43.478 0.00 0.00 0.00 3.16
3437 3487 4.610945 CTTAGGTTTGGCTTGTTCAACTG 58.389 43.478 0.00 0.00 0.00 3.16
3438 3488 2.456577 AGGTTTGGCTTGTTCAACTGT 58.543 42.857 0.00 0.00 0.00 3.55
3439 3489 3.626930 AGGTTTGGCTTGTTCAACTGTA 58.373 40.909 0.00 0.00 0.00 2.74
3440 3490 3.632145 AGGTTTGGCTTGTTCAACTGTAG 59.368 43.478 0.00 0.00 0.00 2.74
3441 3491 3.380320 GGTTTGGCTTGTTCAACTGTAGT 59.620 43.478 0.00 0.00 0.00 2.73
3442 3492 4.351192 GTTTGGCTTGTTCAACTGTAGTG 58.649 43.478 0.00 0.00 0.00 2.74
3443 3493 3.552132 TGGCTTGTTCAACTGTAGTGA 57.448 42.857 0.00 0.00 0.00 3.41
3444 3494 4.085357 TGGCTTGTTCAACTGTAGTGAT 57.915 40.909 0.00 0.00 0.00 3.06
3445 3495 3.814842 TGGCTTGTTCAACTGTAGTGATG 59.185 43.478 0.00 0.00 0.00 3.07
3446 3496 4.065088 GGCTTGTTCAACTGTAGTGATGA 58.935 43.478 0.00 0.00 0.00 2.92
3447 3497 4.697352 GGCTTGTTCAACTGTAGTGATGAT 59.303 41.667 0.00 0.00 0.00 2.45
3460 3510 9.302345 ACTGTAGTGATGATCGTTGTTATTTAG 57.698 33.333 0.00 0.00 0.00 1.85
3473 3523 9.806203 TCGTTGTTATTTAGCATAGTTTAGCTA 57.194 29.630 0.00 0.00 42.05 3.32
3603 3653 7.116736 AGGAAGTAAGTTGGTTTCTTTCTCAA 58.883 34.615 0.00 0.00 27.54 3.02
3618 3668 9.748708 TTTCTTTCTCAATAGTTGTCCATTTTG 57.251 29.630 0.00 0.00 0.00 2.44
3636 3686 5.417754 TTTTGATGCATTTGCCCTATTCA 57.582 34.783 0.00 0.00 41.18 2.57
3905 3963 4.321601 CGATAGGAGGAAGCATAAGAGGTG 60.322 50.000 0.00 0.00 0.00 4.00
3906 3964 2.122768 AGGAGGAAGCATAAGAGGTGG 58.877 52.381 0.00 0.00 0.00 4.61
3907 3965 1.840635 GGAGGAAGCATAAGAGGTGGT 59.159 52.381 0.00 0.00 0.00 4.16
4011 4069 1.269051 GGGTTTGTCTTGAGTTTGCCG 60.269 52.381 0.00 0.00 0.00 5.69
4060 4118 5.100943 GTCCGTTCTTACCAACAGATACTC 58.899 45.833 0.00 0.00 0.00 2.59
4161 4245 3.065648 TCCTTTTTGTGTTGGACGCTTAC 59.934 43.478 0.00 0.00 0.00 2.34
4234 4324 5.482006 CATCTCTTCCGCCATATATGTTCA 58.518 41.667 11.73 0.00 0.00 3.18
4235 4325 5.139435 TCTCTTCCGCCATATATGTTCAG 57.861 43.478 11.73 0.00 0.00 3.02
4236 4326 4.832823 TCTCTTCCGCCATATATGTTCAGA 59.167 41.667 11.73 5.00 0.00 3.27
4256 4350 2.294233 GACTGCAGTGATGCCTCAAAAA 59.706 45.455 27.27 0.00 31.85 1.94
4261 4355 4.705991 TGCAGTGATGCCTCAAAAATGATA 59.294 37.500 0.00 0.00 31.85 2.15
4275 4369 8.608185 TCAAAAATGATATAGGCCTCCTTTTT 57.392 30.769 9.68 10.35 34.61 1.94
4276 4370 8.477256 TCAAAAATGATATAGGCCTCCTTTTTG 58.523 33.333 24.47 24.47 42.25 2.44
4277 4371 6.410942 AAATGATATAGGCCTCCTTTTTGC 57.589 37.500 9.68 0.00 34.61 3.68
4278 4372 4.518278 TGATATAGGCCTCCTTTTTGCA 57.482 40.909 9.68 0.00 34.61 4.08
4279 4373 5.065613 TGATATAGGCCTCCTTTTTGCAT 57.934 39.130 9.68 0.00 34.61 3.96
4281 4375 5.536161 TGATATAGGCCTCCTTTTTGCATTC 59.464 40.000 9.68 0.00 34.61 2.67
4282 4376 2.315720 AGGCCTCCTTTTTGCATTCT 57.684 45.000 0.00 0.00 0.00 2.40
4283 4377 2.613129 AGGCCTCCTTTTTGCATTCTT 58.387 42.857 0.00 0.00 0.00 2.52
4285 4379 3.069289 GGCCTCCTTTTTGCATTCTTTG 58.931 45.455 0.00 0.00 0.00 2.77
4286 4380 7.530735 TAGGCCTCCTTTTTGCATTCTTTGC 62.531 44.000 9.68 0.00 42.64 3.68
4303 4397 9.834628 CATTCTTTGCATGCAAGAATTAAAAAT 57.165 25.926 32.56 21.96 37.24 1.82
4304 4398 9.834628 ATTCTTTGCATGCAAGAATTAAAAATG 57.165 25.926 31.05 15.49 37.24 2.32
4305 4399 8.604640 TCTTTGCATGCAAGAATTAAAAATGA 57.395 26.923 30.25 12.12 37.24 2.57
4306 4400 9.053840 TCTTTGCATGCAAGAATTAAAAATGAA 57.946 25.926 30.25 11.70 37.24 2.57
4307 4401 9.109533 CTTTGCATGCAAGAATTAAAAATGAAC 57.890 29.630 30.25 0.00 37.24 3.18
4308 4402 7.725818 TGCATGCAAGAATTAAAAATGAACA 57.274 28.000 20.30 0.00 0.00 3.18
4309 4403 7.574496 TGCATGCAAGAATTAAAAATGAACAC 58.426 30.769 20.30 0.00 0.00 3.32
4311 4405 7.531534 GCATGCAAGAATTAAAAATGAACACAC 59.468 33.333 14.21 0.00 0.00 3.82
4312 4406 7.475771 TGCAAGAATTAAAAATGAACACACC 57.524 32.000 0.00 0.00 0.00 4.16
4314 4408 7.550551 TGCAAGAATTAAAAATGAACACACCAA 59.449 29.630 0.00 0.00 0.00 3.67
4315 4409 8.558700 GCAAGAATTAAAAATGAACACACCAAT 58.441 29.630 0.00 0.00 0.00 3.16
4317 4411 8.086851 AGAATTAAAAATGAACACACCAATGC 57.913 30.769 0.00 0.00 0.00 3.56
4318 4412 7.714377 AGAATTAAAAATGAACACACCAATGCA 59.286 29.630 0.00 0.00 0.00 3.96
4319 4413 7.982761 ATTAAAAATGAACACACCAATGCAT 57.017 28.000 0.00 0.00 0.00 3.96
4320 4414 5.676532 AAAAATGAACACACCAATGCATG 57.323 34.783 0.00 0.00 0.00 4.06
4321 4415 4.339872 AAATGAACACACCAATGCATGT 57.660 36.364 0.00 0.00 0.00 3.21
4323 4417 5.465532 AATGAACACACCAATGCATGTAA 57.534 34.783 0.00 0.00 0.00 2.41
4342 4436 8.809159 CATGTAATGTTCCTACTCATCTAGTG 57.191 38.462 0.00 0.00 40.20 2.74
4343 4437 7.348080 TGTAATGTTCCTACTCATCTAGTGG 57.652 40.000 0.00 0.00 39.39 4.00
4344 4438 4.946478 ATGTTCCTACTCATCTAGTGGC 57.054 45.455 0.00 0.00 39.39 5.01
4346 4440 5.125367 TGTTCCTACTCATCTAGTGGCTA 57.875 43.478 0.00 0.00 39.39 3.93
4347 4441 5.516044 TGTTCCTACTCATCTAGTGGCTAA 58.484 41.667 0.00 0.00 39.39 3.09
4348 4442 5.594725 TGTTCCTACTCATCTAGTGGCTAAG 59.405 44.000 0.00 0.00 39.39 2.18
4350 4444 6.511017 TCCTACTCATCTAGTGGCTAAGTA 57.489 41.667 0.00 0.00 39.39 2.24
4351 4445 7.092748 TCCTACTCATCTAGTGGCTAAGTAT 57.907 40.000 0.00 0.00 39.39 2.12
4352 4446 6.943146 TCCTACTCATCTAGTGGCTAAGTATG 59.057 42.308 0.00 0.00 39.39 2.39
4353 4447 6.717540 CCTACTCATCTAGTGGCTAAGTATGT 59.282 42.308 0.00 0.00 39.39 2.29
4354 4448 7.883833 CCTACTCATCTAGTGGCTAAGTATGTA 59.116 40.741 0.00 0.00 39.39 2.29
4355 4449 9.456147 CTACTCATCTAGTGGCTAAGTATGTAT 57.544 37.037 0.00 0.00 39.39 2.29
4356 4450 8.116651 ACTCATCTAGTGGCTAAGTATGTATG 57.883 38.462 0.00 0.00 36.93 2.39
4357 4451 6.925211 TCATCTAGTGGCTAAGTATGTATGC 58.075 40.000 0.00 0.00 0.00 3.14
4358 4452 6.493458 TCATCTAGTGGCTAAGTATGTATGCA 59.507 38.462 0.00 0.00 0.00 3.96
4359 4453 6.085555 TCTAGTGGCTAAGTATGTATGCAC 57.914 41.667 0.00 0.00 0.00 4.57
4360 4454 5.833667 TCTAGTGGCTAAGTATGTATGCACT 59.166 40.000 0.00 0.00 0.00 4.40
4361 4455 4.697514 AGTGGCTAAGTATGTATGCACTG 58.302 43.478 0.00 0.00 0.00 3.66
4364 4458 6.046593 GTGGCTAAGTATGTATGCACTGTAA 58.953 40.000 0.00 0.00 0.00 2.41
4365 4459 6.706270 GTGGCTAAGTATGTATGCACTGTAAT 59.294 38.462 0.00 0.00 0.00 1.89
4366 4460 7.226720 GTGGCTAAGTATGTATGCACTGTAATT 59.773 37.037 0.00 0.00 0.00 1.40
4367 4461 8.425703 TGGCTAAGTATGTATGCACTGTAATTA 58.574 33.333 0.00 0.00 0.00 1.40
4368 4462 9.268268 GGCTAAGTATGTATGCACTGTAATTAA 57.732 33.333 0.00 0.00 0.00 1.40
4376 4470 9.681062 ATGTATGCACTGTAATTAACCTAAACT 57.319 29.630 0.00 0.00 0.00 2.66
4433 4527 8.691661 AAATACGAGATATAAAATGCCTTGGT 57.308 30.769 0.00 0.00 0.00 3.67
4434 4528 8.691661 AATACGAGATATAAAATGCCTTGGTT 57.308 30.769 0.00 0.00 0.00 3.67
4435 4529 6.377327 ACGAGATATAAAATGCCTTGGTTG 57.623 37.500 0.00 0.00 0.00 3.77
4436 4530 6.119536 ACGAGATATAAAATGCCTTGGTTGA 58.880 36.000 0.00 0.00 0.00 3.18
4437 4531 6.772716 ACGAGATATAAAATGCCTTGGTTGAT 59.227 34.615 0.00 0.00 0.00 2.57
4438 4532 7.080099 CGAGATATAAAATGCCTTGGTTGATG 58.920 38.462 0.00 0.00 0.00 3.07
4439 4533 7.041167 CGAGATATAAAATGCCTTGGTTGATGA 60.041 37.037 0.00 0.00 0.00 2.92
4440 4534 8.174733 AGATATAAAATGCCTTGGTTGATGAG 57.825 34.615 0.00 0.00 0.00 2.90
4441 4535 8.000709 AGATATAAAATGCCTTGGTTGATGAGA 58.999 33.333 0.00 0.00 0.00 3.27
4442 4536 8.716674 ATATAAAATGCCTTGGTTGATGAGAT 57.283 30.769 0.00 0.00 0.00 2.75
4443 4537 5.750352 AAAATGCCTTGGTTGATGAGATT 57.250 34.783 0.00 0.00 0.00 2.40
4444 4538 5.750352 AAATGCCTTGGTTGATGAGATTT 57.250 34.783 0.00 0.00 0.00 2.17
4445 4539 4.730949 ATGCCTTGGTTGATGAGATTTG 57.269 40.909 0.00 0.00 0.00 2.32
4446 4540 3.765381 TGCCTTGGTTGATGAGATTTGA 58.235 40.909 0.00 0.00 0.00 2.69
4447 4541 3.760151 TGCCTTGGTTGATGAGATTTGAG 59.240 43.478 0.00 0.00 0.00 3.02
4448 4542 3.428589 GCCTTGGTTGATGAGATTTGAGC 60.429 47.826 0.00 0.00 0.00 4.26
4449 4543 3.129988 CCTTGGTTGATGAGATTTGAGCC 59.870 47.826 0.00 0.00 0.00 4.70
4450 4544 2.726821 TGGTTGATGAGATTTGAGCCC 58.273 47.619 0.00 0.00 0.00 5.19
4451 4545 2.309755 TGGTTGATGAGATTTGAGCCCT 59.690 45.455 0.00 0.00 0.00 5.19
4452 4546 3.523157 TGGTTGATGAGATTTGAGCCCTA 59.477 43.478 0.00 0.00 0.00 3.53
4453 4547 4.166725 TGGTTGATGAGATTTGAGCCCTAT 59.833 41.667 0.00 0.00 0.00 2.57
4454 4548 5.369404 TGGTTGATGAGATTTGAGCCCTATA 59.631 40.000 0.00 0.00 0.00 1.31
4455 4549 6.126507 TGGTTGATGAGATTTGAGCCCTATAA 60.127 38.462 0.00 0.00 0.00 0.98
4456 4550 6.772716 GGTTGATGAGATTTGAGCCCTATAAA 59.227 38.462 0.00 0.00 0.00 1.40
4457 4551 7.449704 GGTTGATGAGATTTGAGCCCTATAAAT 59.550 37.037 0.00 0.00 0.00 1.40
4458 4552 8.510505 GTTGATGAGATTTGAGCCCTATAAATC 58.489 37.037 0.00 0.00 39.76 2.17
4459 4553 6.875726 TGATGAGATTTGAGCCCTATAAATCG 59.124 38.462 0.00 0.00 42.61 3.34
4460 4554 6.419484 TGAGATTTGAGCCCTATAAATCGA 57.581 37.500 0.00 0.00 42.61 3.59
4461 4555 6.826668 TGAGATTTGAGCCCTATAAATCGAA 58.173 36.000 0.00 0.00 42.61 3.71
4462 4556 7.279615 TGAGATTTGAGCCCTATAAATCGAAA 58.720 34.615 0.00 0.00 42.61 3.46
4463 4557 7.442364 TGAGATTTGAGCCCTATAAATCGAAAG 59.558 37.037 0.00 0.00 42.61 2.62
4464 4558 6.712547 AGATTTGAGCCCTATAAATCGAAAGG 59.287 38.462 0.00 0.00 42.61 3.11
4503 4597 9.990360 GTTTTCCTTTAAAATATGAAGGGTTGA 57.010 29.630 0.00 0.00 39.22 3.18
4666 4768 9.426837 ACAGATTTTGATGAACATAAATTGGTG 57.573 29.630 0.00 0.00 0.00 4.17
4667 4769 8.385111 CAGATTTTGATGAACATAAATTGGTGC 58.615 33.333 0.00 0.00 0.00 5.01
4668 4770 7.550196 AGATTTTGATGAACATAAATTGGTGCC 59.450 33.333 0.00 0.00 0.00 5.01
4669 4771 5.735285 TTGATGAACATAAATTGGTGCCA 57.265 34.783 0.00 0.00 0.00 4.92
4670 4772 5.936187 TGATGAACATAAATTGGTGCCAT 57.064 34.783 0.00 0.00 0.00 4.40
4671 4773 5.662456 TGATGAACATAAATTGGTGCCATG 58.338 37.500 0.00 0.00 0.00 3.66
4672 4774 3.859443 TGAACATAAATTGGTGCCATGC 58.141 40.909 0.00 0.00 0.00 4.06
4673 4775 3.514706 TGAACATAAATTGGTGCCATGCT 59.485 39.130 0.00 0.00 0.00 3.79
4674 4776 3.530265 ACATAAATTGGTGCCATGCTG 57.470 42.857 0.00 0.00 0.00 4.41
4675 4777 2.833338 ACATAAATTGGTGCCATGCTGT 59.167 40.909 0.00 0.00 0.00 4.40
4676 4778 4.022603 ACATAAATTGGTGCCATGCTGTA 58.977 39.130 0.00 0.00 0.00 2.74
4677 4779 4.142182 ACATAAATTGGTGCCATGCTGTAC 60.142 41.667 0.00 0.00 0.00 2.90
4678 4780 1.185315 AATTGGTGCCATGCTGTACC 58.815 50.000 2.88 2.88 0.00 3.34
4679 4781 0.684153 ATTGGTGCCATGCTGTACCC 60.684 55.000 6.74 0.00 32.20 3.69
4680 4782 2.074113 TTGGTGCCATGCTGTACCCA 62.074 55.000 6.74 0.00 32.20 4.51
4681 4783 1.750399 GGTGCCATGCTGTACCCAG 60.750 63.158 0.00 0.00 41.91 4.45
4682 4784 1.750399 GTGCCATGCTGTACCCAGG 60.750 63.158 0.00 0.00 39.22 4.45
4683 4785 2.124151 GCCATGCTGTACCCAGGG 60.124 66.667 2.85 2.85 39.22 4.45
4684 4786 2.597340 CCATGCTGTACCCAGGGG 59.403 66.667 11.37 6.87 39.22 4.79
4685 4787 2.000701 CCATGCTGTACCCAGGGGA 61.001 63.158 11.37 0.00 39.22 4.81
4686 4788 1.355718 CCATGCTGTACCCAGGGGAT 61.356 60.000 11.37 0.00 39.22 3.85
4687 4789 0.179009 CATGCTGTACCCAGGGGATG 60.179 60.000 11.37 0.00 39.22 3.51
4695 4797 2.520982 CCAGGGGATGGCATGCTG 60.521 66.667 18.92 9.86 43.83 4.41
4696 4798 2.277737 CAGGGGATGGCATGCTGT 59.722 61.111 18.92 6.34 0.00 4.40
4697 4799 1.380785 CAGGGGATGGCATGCTGTT 60.381 57.895 18.92 2.16 0.00 3.16
4698 4800 1.380785 AGGGGATGGCATGCTGTTG 60.381 57.895 18.92 0.00 0.00 3.33
4699 4801 1.683365 GGGGATGGCATGCTGTTGT 60.683 57.895 18.92 0.00 0.00 3.32
4700 4802 1.259840 GGGGATGGCATGCTGTTGTT 61.260 55.000 18.92 0.00 0.00 2.83
4701 4803 0.108520 GGGATGGCATGCTGTTGTTG 60.109 55.000 18.92 0.00 0.00 3.33
4702 4804 0.604578 GGATGGCATGCTGTTGTTGT 59.395 50.000 18.92 0.00 0.00 3.32
4703 4805 1.670674 GGATGGCATGCTGTTGTTGTG 60.671 52.381 18.92 0.00 0.00 3.33
4704 4806 0.320073 ATGGCATGCTGTTGTTGTGC 60.320 50.000 18.92 0.00 35.17 4.57
4705 4807 1.364901 GGCATGCTGTTGTTGTGCT 59.635 52.632 18.92 0.00 36.15 4.40
4706 4808 0.942410 GGCATGCTGTTGTTGTGCTG 60.942 55.000 18.92 0.00 36.15 4.41
4707 4809 0.942410 GCATGCTGTTGTTGTGCTGG 60.942 55.000 11.37 0.00 33.25 4.85
4708 4810 0.386476 CATGCTGTTGTTGTGCTGGT 59.614 50.000 0.00 0.00 0.00 4.00
4709 4811 0.386476 ATGCTGTTGTTGTGCTGGTG 59.614 50.000 0.00 0.00 0.00 4.17
4710 4812 0.964860 TGCTGTTGTTGTGCTGGTGT 60.965 50.000 0.00 0.00 0.00 4.16
4711 4813 0.248621 GCTGTTGTTGTGCTGGTGTC 60.249 55.000 0.00 0.00 0.00 3.67
4712 4814 1.093972 CTGTTGTTGTGCTGGTGTCA 58.906 50.000 0.00 0.00 0.00 3.58
4713 4815 1.677576 CTGTTGTTGTGCTGGTGTCAT 59.322 47.619 0.00 0.00 0.00 3.06
4714 4816 1.675483 TGTTGTTGTGCTGGTGTCATC 59.325 47.619 0.00 0.00 0.00 2.92
4715 4817 0.943673 TTGTTGTGCTGGTGTCATCG 59.056 50.000 0.00 0.00 0.00 3.84
4716 4818 0.179059 TGTTGTGCTGGTGTCATCGT 60.179 50.000 0.00 0.00 0.00 3.73
4717 4819 0.944386 GTTGTGCTGGTGTCATCGTT 59.056 50.000 0.00 0.00 0.00 3.85
4718 4820 2.139917 GTTGTGCTGGTGTCATCGTTA 58.860 47.619 0.00 0.00 0.00 3.18
4719 4821 2.742053 GTTGTGCTGGTGTCATCGTTAT 59.258 45.455 0.00 0.00 0.00 1.89
4720 4822 3.052455 TGTGCTGGTGTCATCGTTATT 57.948 42.857 0.00 0.00 0.00 1.40
4721 4823 2.741517 TGTGCTGGTGTCATCGTTATTG 59.258 45.455 0.00 0.00 0.00 1.90
4722 4824 3.000041 GTGCTGGTGTCATCGTTATTGA 59.000 45.455 0.00 0.00 0.00 2.57
4723 4825 3.623060 GTGCTGGTGTCATCGTTATTGAT 59.377 43.478 0.00 0.00 0.00 2.57
4724 4826 4.808895 GTGCTGGTGTCATCGTTATTGATA 59.191 41.667 0.00 0.00 0.00 2.15
4725 4827 5.293324 GTGCTGGTGTCATCGTTATTGATAA 59.707 40.000 0.00 0.00 0.00 1.75
4726 4828 6.017934 GTGCTGGTGTCATCGTTATTGATAAT 60.018 38.462 0.00 0.00 0.00 1.28
4727 4829 6.542005 TGCTGGTGTCATCGTTATTGATAATT 59.458 34.615 0.00 0.00 0.00 1.40
4728 4830 6.852853 GCTGGTGTCATCGTTATTGATAATTG 59.147 38.462 0.00 0.00 0.00 2.32
4729 4831 6.724263 TGGTGTCATCGTTATTGATAATTGC 58.276 36.000 0.00 0.00 0.00 3.56
4730 4832 6.142817 GGTGTCATCGTTATTGATAATTGCC 58.857 40.000 0.00 0.00 0.00 4.52
4731 4833 5.845953 GTGTCATCGTTATTGATAATTGCCG 59.154 40.000 0.00 0.00 0.00 5.69
4732 4834 5.755861 TGTCATCGTTATTGATAATTGCCGA 59.244 36.000 0.00 0.00 0.00 5.54
4733 4835 6.258947 TGTCATCGTTATTGATAATTGCCGAA 59.741 34.615 0.00 0.00 0.00 4.30
4734 4836 6.573725 GTCATCGTTATTGATAATTGCCGAAC 59.426 38.462 0.00 0.00 0.00 3.95
4735 4837 6.258947 TCATCGTTATTGATAATTGCCGAACA 59.741 34.615 0.00 0.00 0.00 3.18
4736 4838 6.612247 TCGTTATTGATAATTGCCGAACAT 57.388 33.333 0.00 0.00 0.00 2.71
4737 4839 6.426327 TCGTTATTGATAATTGCCGAACATG 58.574 36.000 0.00 0.00 0.00 3.21
4738 4840 5.115472 CGTTATTGATAATTGCCGAACATGC 59.885 40.000 0.00 0.00 0.00 4.06
4739 4841 3.435105 TTGATAATTGCCGAACATGCC 57.565 42.857 0.00 0.00 0.00 4.40
4740 4842 2.373224 TGATAATTGCCGAACATGCCA 58.627 42.857 0.00 0.00 0.00 4.92
4741 4843 2.957680 TGATAATTGCCGAACATGCCAT 59.042 40.909 0.00 0.00 0.00 4.40
4742 4844 2.867287 TAATTGCCGAACATGCCATG 57.133 45.000 2.40 2.40 0.00 3.66
4754 4856 3.512516 GCCATGTTCAGGCGCCTC 61.513 66.667 30.29 17.22 43.15 4.70
4755 4857 3.197790 CCATGTTCAGGCGCCTCG 61.198 66.667 30.29 22.12 0.00 4.63
4756 4858 2.434884 CATGTTCAGGCGCCTCGT 60.435 61.111 30.29 14.95 0.00 4.18
4757 4859 2.125512 ATGTTCAGGCGCCTCGTC 60.126 61.111 30.29 19.41 0.00 4.20
4758 4860 3.665675 ATGTTCAGGCGCCTCGTCC 62.666 63.158 30.29 15.40 28.67 4.79
4774 4876 1.557651 GTCCCGAACGAGCTAATCAC 58.442 55.000 0.00 0.00 0.00 3.06
4775 4877 0.458669 TCCCGAACGAGCTAATCACC 59.541 55.000 0.00 0.00 0.00 4.02
4776 4878 0.870307 CCCGAACGAGCTAATCACCG 60.870 60.000 0.00 0.00 0.00 4.94
4777 4879 0.179145 CCGAACGAGCTAATCACCGT 60.179 55.000 0.00 0.00 36.77 4.83
4778 4880 1.625616 CGAACGAGCTAATCACCGTT 58.374 50.000 8.19 8.19 46.15 4.44
4779 4881 1.320555 CGAACGAGCTAATCACCGTTG 59.679 52.381 12.62 3.21 43.96 4.10
4780 4882 2.602878 GAACGAGCTAATCACCGTTGA 58.397 47.619 12.62 0.00 43.96 3.18
4781 4883 2.961526 ACGAGCTAATCACCGTTGAT 57.038 45.000 0.00 0.00 44.98 2.57
4789 4891 2.198827 ATCACCGTTGATTTCAGGCA 57.801 45.000 0.00 0.00 39.66 4.75
4790 4892 1.234821 TCACCGTTGATTTCAGGCAC 58.765 50.000 0.00 0.00 0.00 5.01
4791 4893 0.110238 CACCGTTGATTTCAGGCACG 60.110 55.000 0.00 0.00 0.00 5.34
4792 4894 0.250124 ACCGTTGATTTCAGGCACGA 60.250 50.000 5.16 0.00 31.44 4.35
4793 4895 0.871722 CCGTTGATTTCAGGCACGAA 59.128 50.000 5.16 0.00 31.44 3.85
4794 4896 1.468520 CCGTTGATTTCAGGCACGAAT 59.531 47.619 5.16 0.00 31.44 3.34
4795 4897 2.095263 CCGTTGATTTCAGGCACGAATT 60.095 45.455 5.16 0.00 31.44 2.17
4796 4898 3.564511 CGTTGATTTCAGGCACGAATTT 58.435 40.909 0.00 0.00 31.44 1.82
4797 4899 3.980775 CGTTGATTTCAGGCACGAATTTT 59.019 39.130 0.00 0.00 31.44 1.82
4798 4900 5.150683 CGTTGATTTCAGGCACGAATTTTA 58.849 37.500 0.00 0.00 31.44 1.52
4799 4901 5.283717 CGTTGATTTCAGGCACGAATTTTAG 59.716 40.000 0.00 0.00 31.44 1.85
4800 4902 6.378582 GTTGATTTCAGGCACGAATTTTAGA 58.621 36.000 0.00 0.00 0.00 2.10
4801 4903 6.182039 TGATTTCAGGCACGAATTTTAGAG 57.818 37.500 0.00 0.00 0.00 2.43
4802 4904 4.419522 TTTCAGGCACGAATTTTAGAGC 57.580 40.909 0.00 0.00 0.00 4.09
4803 4905 3.334583 TCAGGCACGAATTTTAGAGCT 57.665 42.857 0.00 0.00 0.00 4.09
4804 4906 4.465632 TCAGGCACGAATTTTAGAGCTA 57.534 40.909 0.00 0.00 0.00 3.32
4805 4907 4.433615 TCAGGCACGAATTTTAGAGCTAG 58.566 43.478 0.00 0.00 0.00 3.42
4806 4908 3.557595 CAGGCACGAATTTTAGAGCTAGG 59.442 47.826 0.00 0.00 0.00 3.02
4807 4909 3.451178 AGGCACGAATTTTAGAGCTAGGA 59.549 43.478 0.00 0.00 0.00 2.94
4808 4910 3.556365 GGCACGAATTTTAGAGCTAGGAC 59.444 47.826 0.00 0.00 0.00 3.85
4809 4911 4.434520 GCACGAATTTTAGAGCTAGGACT 58.565 43.478 0.00 0.00 0.00 3.85
4810 4912 4.870991 GCACGAATTTTAGAGCTAGGACTT 59.129 41.667 0.00 0.00 0.00 3.01
4811 4913 5.005875 GCACGAATTTTAGAGCTAGGACTTC 59.994 44.000 0.00 0.00 0.00 3.01
4812 4914 6.334202 CACGAATTTTAGAGCTAGGACTTCT 58.666 40.000 0.00 0.00 0.00 2.85
4813 4915 6.254589 CACGAATTTTAGAGCTAGGACTTCTG 59.745 42.308 0.00 0.00 0.00 3.02
4814 4916 5.233263 CGAATTTTAGAGCTAGGACTTCTGC 59.767 44.000 0.00 0.00 0.00 4.26
4815 4917 4.473477 TTTTAGAGCTAGGACTTCTGCC 57.527 45.455 0.00 0.00 0.00 4.85
4816 4918 2.828661 TAGAGCTAGGACTTCTGCCA 57.171 50.000 0.00 0.00 0.00 4.92
4817 4919 1.190643 AGAGCTAGGACTTCTGCCAC 58.809 55.000 0.00 0.00 0.00 5.01
4818 4920 0.898320 GAGCTAGGACTTCTGCCACA 59.102 55.000 0.00 0.00 0.00 4.17
4819 4921 1.484240 GAGCTAGGACTTCTGCCACAT 59.516 52.381 0.00 0.00 0.00 3.21
4820 4922 1.484240 AGCTAGGACTTCTGCCACATC 59.516 52.381 0.00 0.00 0.00 3.06
4821 4923 1.208052 GCTAGGACTTCTGCCACATCA 59.792 52.381 0.00 0.00 0.00 3.07
4822 4924 2.158842 GCTAGGACTTCTGCCACATCAT 60.159 50.000 0.00 0.00 0.00 2.45
4823 4925 2.706339 AGGACTTCTGCCACATCATC 57.294 50.000 0.00 0.00 0.00 2.92
4824 4926 1.211457 AGGACTTCTGCCACATCATCC 59.789 52.381 0.00 0.00 0.00 3.51
4825 4927 1.211457 GGACTTCTGCCACATCATCCT 59.789 52.381 0.00 0.00 0.00 3.24
4826 4928 2.356535 GGACTTCTGCCACATCATCCTT 60.357 50.000 0.00 0.00 0.00 3.36
4827 4929 3.350833 GACTTCTGCCACATCATCCTTT 58.649 45.455 0.00 0.00 0.00 3.11
4828 4930 3.760684 GACTTCTGCCACATCATCCTTTT 59.239 43.478 0.00 0.00 0.00 2.27
4829 4931 4.154942 ACTTCTGCCACATCATCCTTTTT 58.845 39.130 0.00 0.00 0.00 1.94
4849 4951 6.847956 TTTTTCTCGTTCGGATAAAAGACA 57.152 33.333 0.00 0.00 33.79 3.41
4850 4952 7.429636 TTTTTCTCGTTCGGATAAAAGACAT 57.570 32.000 0.00 0.00 33.79 3.06
4851 4953 6.403333 TTTCTCGTTCGGATAAAAGACATG 57.597 37.500 0.00 0.00 0.00 3.21
4852 4954 5.068234 TCTCGTTCGGATAAAAGACATGT 57.932 39.130 0.00 0.00 0.00 3.21
4853 4955 5.100259 TCTCGTTCGGATAAAAGACATGTC 58.900 41.667 18.47 18.47 0.00 3.06
4854 4956 3.855379 TCGTTCGGATAAAAGACATGTCG 59.145 43.478 19.85 6.59 34.09 4.35
4855 4957 3.541516 CGTTCGGATAAAAGACATGTCGC 60.542 47.826 19.85 6.74 34.09 5.19
4856 4958 3.520290 TCGGATAAAAGACATGTCGCT 57.480 42.857 19.85 8.84 34.09 4.93
4857 4959 3.186909 TCGGATAAAAGACATGTCGCTG 58.813 45.455 19.85 11.07 34.09 5.18
4858 4960 2.285834 CGGATAAAAGACATGTCGCTGC 60.286 50.000 19.85 8.70 34.09 5.25
4859 4961 2.285834 GGATAAAAGACATGTCGCTGCG 60.286 50.000 19.85 17.25 34.09 5.18
4860 4962 2.073117 TAAAAGACATGTCGCTGCGA 57.927 45.000 22.24 22.24 34.09 5.10
4861 4963 1.225855 AAAAGACATGTCGCTGCGAA 58.774 45.000 27.68 16.83 37.72 4.70
4862 4964 0.512952 AAAGACATGTCGCTGCGAAC 59.487 50.000 27.68 19.91 37.72 3.95
4863 4965 1.617755 AAGACATGTCGCTGCGAACG 61.618 55.000 27.68 19.14 37.72 3.95
4864 4966 3.686392 GACATGTCGCTGCGAACGC 62.686 63.158 27.68 15.08 37.72 4.84
4865 4967 4.505217 CATGTCGCTGCGAACGCC 62.505 66.667 27.68 14.70 37.72 5.68
4866 4968 4.742201 ATGTCGCTGCGAACGCCT 62.742 61.111 27.68 4.67 37.72 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.644347 TGGCAAAATTTGTTCTCCAAAACTA 58.356 32.000 7.60 0.00 45.72 2.24
81 86 7.334671 AGTTTCTTAGGCCGAGATCTTTAAAAG 59.665 37.037 11.92 0.00 0.00 2.27
140 145 2.470196 ACGACATATCTCGTGAACGG 57.530 50.000 5.16 0.00 45.14 4.44
141 146 5.920085 TTAAACGACATATCTCGTGAACG 57.080 39.130 6.80 0.00 46.13 3.95
184 189 4.030216 AGGAGGTTGGTTGTTTGTTCATT 58.970 39.130 0.00 0.00 0.00 2.57
186 191 3.094484 AGGAGGTTGGTTGTTTGTTCA 57.906 42.857 0.00 0.00 0.00 3.18
196 202 4.141344 TGTGCTAAGTTTTAGGAGGTTGGT 60.141 41.667 0.00 0.00 0.00 3.67
198 204 7.552687 TCATATGTGCTAAGTTTTAGGAGGTTG 59.447 37.037 1.90 0.00 0.00 3.77
200 206 7.195374 TCATATGTGCTAAGTTTTAGGAGGT 57.805 36.000 1.90 0.00 0.00 3.85
279 285 7.280044 AGGCTAACCCCTAAAGAAAAGATAA 57.720 36.000 0.00 0.00 36.11 1.75
280 286 6.903340 AGGCTAACCCCTAAAGAAAAGATA 57.097 37.500 0.00 0.00 36.11 1.98
282 288 6.903340 ATAGGCTAACCCCTAAAGAAAAGA 57.097 37.500 0.00 0.00 40.67 2.52
288 294 7.793948 ATACAGTATAGGCTAACCCCTAAAG 57.206 40.000 0.00 0.00 40.67 1.85
291 297 6.866621 TCAATACAGTATAGGCTAACCCCTA 58.133 40.000 0.00 0.00 41.48 3.53
292 298 5.723355 TCAATACAGTATAGGCTAACCCCT 58.277 41.667 0.00 0.00 39.05 4.79
296 302 9.640963 AATTCGATCAATACAGTATAGGCTAAC 57.359 33.333 0.00 0.00 0.00 2.34
297 303 9.856488 GAATTCGATCAATACAGTATAGGCTAA 57.144 33.333 0.00 0.00 0.00 3.09
298 304 8.467598 GGAATTCGATCAATACAGTATAGGCTA 58.532 37.037 0.00 0.00 0.00 3.93
309 315 4.617959 TCTCCGTGGAATTCGATCAATAC 58.382 43.478 0.00 0.00 0.00 1.89
327 333 4.689612 TGTAAGCATTATCCCACTCTCC 57.310 45.455 0.00 0.00 30.46 3.71
377 383 3.699538 TGCTCTTAATCTAGCTCCACGAA 59.300 43.478 0.00 0.00 39.53 3.85
378 384 3.288092 TGCTCTTAATCTAGCTCCACGA 58.712 45.455 0.00 0.00 39.53 4.35
463 469 0.179145 GCAGCTCGTTCTACCGCTTA 60.179 55.000 0.00 0.00 0.00 3.09
467 473 1.061131 CATTTGCAGCTCGTTCTACCG 59.939 52.381 0.00 0.00 0.00 4.02
476 482 3.142174 GGTATAGGGTCATTTGCAGCTC 58.858 50.000 0.00 0.00 0.00 4.09
584 590 3.335711 GCCCATGGTCTAGGCCTT 58.664 61.111 12.58 5.25 41.00 4.35
617 623 2.300967 GCCCATGGTCTCCACTCCA 61.301 63.158 11.73 0.00 35.80 3.86
618 624 2.592308 GCCCATGGTCTCCACTCC 59.408 66.667 11.73 0.00 35.80 3.85
619 625 1.852157 TTGGCCCATGGTCTCCACTC 61.852 60.000 11.73 0.00 35.80 3.51
977 1010 1.267121 GAGTGCAGTGGAGTAGGGAA 58.733 55.000 0.00 0.00 0.00 3.97
1058 1094 1.530323 TAAGAGGGCGCAAAAGGTTC 58.470 50.000 10.83 0.00 0.00 3.62
1330 1368 2.036992 CCACAAAAGCACAGCCCAAATA 59.963 45.455 0.00 0.00 0.00 1.40
1331 1369 1.202675 CCACAAAAGCACAGCCCAAAT 60.203 47.619 0.00 0.00 0.00 2.32
1351 1389 6.691388 GTCAAAACACTGACAGTCCAAAATAC 59.309 38.462 4.74 0.00 44.32 1.89
1370 1408 9.695526 CATTGAGATGGTAAAAATCAGTCAAAA 57.304 29.630 0.00 0.00 0.00 2.44
1458 1496 6.093909 CACATACAGGACAAACTAATGATGCA 59.906 38.462 0.00 0.00 0.00 3.96
1507 1545 7.252865 GCGCAAACAAAACGACTAATAAGTATG 60.253 37.037 0.30 0.00 35.56 2.39
1528 1566 1.002900 CTCAACGAAGAAAAGGCGCAA 60.003 47.619 10.83 0.00 0.00 4.85
1543 1581 7.547370 AGAACAGCATCAATAAGTAGACTCAAC 59.453 37.037 0.00 0.00 0.00 3.18
1550 1588 6.253746 GCAACAGAACAGCATCAATAAGTAG 58.746 40.000 0.00 0.00 0.00 2.57
1901 1947 7.669427 AGTGGAAATAATCATTGAGCACAAAA 58.331 30.769 0.00 0.00 39.54 2.44
1970 2016 3.372206 CCATGTTAGTCTCAAAGGCTTCG 59.628 47.826 0.00 0.00 29.80 3.79
1985 2031 3.081061 GACTGTGTTGGATGCCATGTTA 58.919 45.455 0.00 0.00 31.53 2.41
2093 2139 6.618592 GCGTGCTGTAACATATCCATAACATC 60.619 42.308 0.00 0.00 0.00 3.06
2110 2156 1.884464 CAGATATGGCGCGTGCTGT 60.884 57.895 21.89 12.10 42.25 4.40
2114 2160 1.277739 CAAGCAGATATGGCGCGTG 59.722 57.895 8.43 0.00 36.08 5.34
2117 2163 1.895707 AGGCAAGCAGATATGGCGC 60.896 57.895 0.00 0.00 45.85 6.53
2140 2186 4.726035 ATAGATAAGGGAGAGACGGTCA 57.274 45.455 11.27 0.00 0.00 4.02
2152 2198 9.751542 ATGTACTCAACGAAGAAATAGATAAGG 57.248 33.333 0.00 0.00 0.00 2.69
2229 2277 8.597662 TTCTCAACACAGTGTACCTTATTTAC 57.402 34.615 6.63 0.00 0.00 2.01
2240 2288 4.261322 GCATGAACATTCTCAACACAGTGT 60.261 41.667 0.00 0.00 0.00 3.55
2247 2295 5.112220 TGACTTGCATGAACATTCTCAAC 57.888 39.130 6.60 0.00 0.00 3.18
2341 2389 7.528996 TCTCCATGGAAGCATTATAATTTGG 57.471 36.000 17.00 0.00 0.00 3.28
2383 2431 4.202223 ACGATACAGGACCATGGACATTAC 60.202 45.833 21.47 0.00 0.00 1.89
2390 2438 1.134401 AGCAACGATACAGGACCATGG 60.134 52.381 11.19 11.19 0.00 3.66
2402 2450 3.715628 AAACTTTGAAGCAGCAACGAT 57.284 38.095 0.00 0.00 0.00 3.73
2558 2606 2.626266 TCCGACTGAGAAACTACTTGCA 59.374 45.455 0.00 0.00 0.00 4.08
2611 2659 3.126000 CCATTCGAGAAGGAAGAAAGTGC 59.874 47.826 0.00 0.00 0.00 4.40
2866 2914 1.737793 GGTGAGGTTTATTCACAGGCG 59.262 52.381 7.57 0.00 45.23 5.52
2902 2950 1.222113 GTCCCTAGAGTTGCCTGGC 59.778 63.158 12.87 12.87 0.00 4.85
2917 2965 2.109126 GCTGCCACCGATGAAGTCC 61.109 63.158 0.00 0.00 0.00 3.85
2975 3023 7.285401 AGCATAAAGACAGAAAAACCTTCTTCA 59.715 33.333 0.00 0.00 0.00 3.02
2991 3039 9.586435 AAATGTAAATTAGGCAAGCATAAAGAC 57.414 29.630 3.16 3.31 0.00 3.01
3431 3481 5.134202 ACAACGATCATCACTACAGTTGA 57.866 39.130 11.61 0.00 39.60 3.18
3435 3485 8.269424 GCTAAATAACAACGATCATCACTACAG 58.731 37.037 0.00 0.00 0.00 2.74
3436 3486 7.762159 TGCTAAATAACAACGATCATCACTACA 59.238 33.333 0.00 0.00 0.00 2.74
3437 3487 8.126871 TGCTAAATAACAACGATCATCACTAC 57.873 34.615 0.00 0.00 0.00 2.73
3438 3488 8.887036 ATGCTAAATAACAACGATCATCACTA 57.113 30.769 0.00 0.00 0.00 2.74
3439 3489 7.792374 ATGCTAAATAACAACGATCATCACT 57.208 32.000 0.00 0.00 0.00 3.41
3440 3490 8.765219 ACTATGCTAAATAACAACGATCATCAC 58.235 33.333 0.00 0.00 0.00 3.06
3441 3491 8.887036 ACTATGCTAAATAACAACGATCATCA 57.113 30.769 0.00 0.00 0.00 3.07
3445 3495 9.582223 GCTAAACTATGCTAAATAACAACGATC 57.418 33.333 0.00 0.00 0.00 3.69
3446 3496 9.326413 AGCTAAACTATGCTAAATAACAACGAT 57.674 29.630 0.00 0.00 37.81 3.73
3447 3497 8.712285 AGCTAAACTATGCTAAATAACAACGA 57.288 30.769 0.00 0.00 37.81 3.85
3460 3510 9.698309 TTCAGATTATGACTAGCTAAACTATGC 57.302 33.333 0.00 0.00 37.77 3.14
3603 3653 6.314400 GCAAATGCATCAAAATGGACAACTAT 59.686 34.615 0.00 0.00 35.91 2.12
3636 3686 7.500227 TCTGCTAGCAGCTTACATTATTCATTT 59.500 33.333 35.21 0.00 42.97 2.32
3905 3963 2.484264 CCACTTCTCACGGATCAAAACC 59.516 50.000 0.00 0.00 0.00 3.27
3906 3964 3.399330 TCCACTTCTCACGGATCAAAAC 58.601 45.455 0.00 0.00 0.00 2.43
3907 3965 3.664107 CTCCACTTCTCACGGATCAAAA 58.336 45.455 0.00 0.00 0.00 2.44
4060 4118 6.269315 ACGAGAAGACAGAATAGCAACATAG 58.731 40.000 0.00 0.00 0.00 2.23
4161 4245 1.520342 GCCGTCTCTGCTGGCTAAG 60.520 63.158 0.00 0.00 45.40 2.18
4193 4283 2.597340 CAGATGGGGATTGCCGGT 59.403 61.111 1.90 0.00 33.83 5.28
4256 4350 5.065613 TGCAAAAAGGAGGCCTATATCAT 57.934 39.130 4.42 0.00 31.13 2.45
4261 4355 3.986435 AGAATGCAAAAAGGAGGCCTAT 58.014 40.909 4.42 0.00 31.13 2.57
4277 4371 9.834628 ATTTTTAATTCTTGCATGCAAAGAATG 57.165 25.926 33.86 24.56 35.78 2.67
4278 4372 9.834628 CATTTTTAATTCTTGCATGCAAAGAAT 57.165 25.926 31.05 31.05 36.42 2.40
4279 4373 9.053840 TCATTTTTAATTCTTGCATGCAAAGAA 57.946 25.926 31.37 30.57 35.33 2.52
4281 4375 9.109533 GTTCATTTTTAATTCTTGCATGCAAAG 57.890 29.630 31.37 23.99 35.33 2.77
4282 4376 8.618677 TGTTCATTTTTAATTCTTGCATGCAAA 58.381 25.926 31.37 19.79 35.33 3.68
4283 4377 8.068977 GTGTTCATTTTTAATTCTTGCATGCAA 58.931 29.630 30.12 30.12 0.00 4.08
4285 4379 7.531534 GTGTGTTCATTTTTAATTCTTGCATGC 59.468 33.333 11.82 11.82 0.00 4.06
4286 4380 8.011106 GGTGTGTTCATTTTTAATTCTTGCATG 58.989 33.333 0.00 0.00 0.00 4.06
4288 4382 7.044181 TGGTGTGTTCATTTTTAATTCTTGCA 58.956 30.769 0.00 0.00 0.00 4.08
4290 4384 9.866936 CATTGGTGTGTTCATTTTTAATTCTTG 57.133 29.630 0.00 0.00 0.00 3.02
4292 4386 7.714377 TGCATTGGTGTGTTCATTTTTAATTCT 59.286 29.630 0.00 0.00 0.00 2.40
4293 4387 7.859598 TGCATTGGTGTGTTCATTTTTAATTC 58.140 30.769 0.00 0.00 0.00 2.17
4295 4389 7.444792 ACATGCATTGGTGTGTTCATTTTTAAT 59.555 29.630 0.00 0.00 0.00 1.40
4296 4390 6.765036 ACATGCATTGGTGTGTTCATTTTTAA 59.235 30.769 0.00 0.00 0.00 1.52
4297 4391 6.286758 ACATGCATTGGTGTGTTCATTTTTA 58.713 32.000 0.00 0.00 0.00 1.52
4300 4394 4.339872 ACATGCATTGGTGTGTTCATTT 57.660 36.364 0.00 0.00 0.00 2.32
4301 4395 5.465532 TTACATGCATTGGTGTGTTCATT 57.534 34.783 0.00 0.00 0.00 2.57
4302 4396 5.047164 ACATTACATGCATTGGTGTGTTCAT 60.047 36.000 0.00 0.00 0.00 2.57
4303 4397 4.280425 ACATTACATGCATTGGTGTGTTCA 59.720 37.500 0.00 0.00 0.00 3.18
4304 4398 4.808558 ACATTACATGCATTGGTGTGTTC 58.191 39.130 0.00 0.00 0.00 3.18
4305 4399 4.870123 ACATTACATGCATTGGTGTGTT 57.130 36.364 0.00 0.00 0.00 3.32
4306 4400 4.321899 GGAACATTACATGCATTGGTGTGT 60.322 41.667 0.00 0.63 0.00 3.72
4307 4401 4.082081 AGGAACATTACATGCATTGGTGTG 60.082 41.667 0.00 0.00 0.00 3.82
4308 4402 4.088634 AGGAACATTACATGCATTGGTGT 58.911 39.130 0.00 0.00 0.00 4.16
4309 4403 4.724074 AGGAACATTACATGCATTGGTG 57.276 40.909 0.00 0.00 0.00 4.17
4311 4405 5.589855 TGAGTAGGAACATTACATGCATTGG 59.410 40.000 0.00 0.00 0.00 3.16
4312 4406 6.682423 TGAGTAGGAACATTACATGCATTG 57.318 37.500 0.00 0.00 0.00 2.82
4314 4408 6.835174 AGATGAGTAGGAACATTACATGCAT 58.165 36.000 0.00 0.00 0.00 3.96
4315 4409 6.239217 AGATGAGTAGGAACATTACATGCA 57.761 37.500 0.00 0.00 0.00 3.96
4317 4411 7.869937 CCACTAGATGAGTAGGAACATTACATG 59.130 40.741 0.00 0.00 35.64 3.21
4318 4412 7.472100 GCCACTAGATGAGTAGGAACATTACAT 60.472 40.741 0.00 0.00 35.64 2.29
4319 4413 6.183360 GCCACTAGATGAGTAGGAACATTACA 60.183 42.308 0.00 0.00 35.64 2.41
4320 4414 6.041069 AGCCACTAGATGAGTAGGAACATTAC 59.959 42.308 0.00 0.00 35.64 1.89
4321 4415 6.136857 AGCCACTAGATGAGTAGGAACATTA 58.863 40.000 0.00 0.00 35.64 1.90
4323 4417 4.551671 AGCCACTAGATGAGTAGGAACAT 58.448 43.478 0.00 0.00 35.64 2.71
4325 4419 5.595133 ACTTAGCCACTAGATGAGTAGGAAC 59.405 44.000 0.00 0.00 35.64 3.62
4326 4420 5.767670 ACTTAGCCACTAGATGAGTAGGAA 58.232 41.667 0.00 0.00 35.64 3.36
4327 4421 5.390087 ACTTAGCCACTAGATGAGTAGGA 57.610 43.478 0.00 0.00 35.64 2.94
4328 4422 6.717540 ACATACTTAGCCACTAGATGAGTAGG 59.282 42.308 0.00 1.18 35.64 3.18
4329 4423 7.753309 ACATACTTAGCCACTAGATGAGTAG 57.247 40.000 0.00 0.00 35.64 2.57
4330 4424 9.232473 CATACATACTTAGCCACTAGATGAGTA 57.768 37.037 0.00 0.00 35.64 2.59
4331 4425 7.309499 GCATACATACTTAGCCACTAGATGAGT 60.309 40.741 0.00 0.00 39.82 3.41
4332 4426 7.032580 GCATACATACTTAGCCACTAGATGAG 58.967 42.308 0.00 0.00 0.00 2.90
4333 4427 6.493458 TGCATACATACTTAGCCACTAGATGA 59.507 38.462 0.00 0.00 0.00 2.92
4334 4428 6.587990 GTGCATACATACTTAGCCACTAGATG 59.412 42.308 0.00 0.00 0.00 2.90
4336 4430 5.833667 AGTGCATACATACTTAGCCACTAGA 59.166 40.000 0.00 0.00 0.00 2.43
4337 4431 5.923114 CAGTGCATACATACTTAGCCACTAG 59.077 44.000 0.00 0.00 0.00 2.57
4338 4432 5.362717 ACAGTGCATACATACTTAGCCACTA 59.637 40.000 0.00 0.00 0.00 2.74
4339 4433 4.162320 ACAGTGCATACATACTTAGCCACT 59.838 41.667 0.00 0.00 0.00 4.00
4341 4435 4.753516 ACAGTGCATACATACTTAGCCA 57.246 40.909 0.00 0.00 0.00 4.75
4342 4436 7.730364 AATTACAGTGCATACATACTTAGCC 57.270 36.000 0.00 0.00 0.00 3.93
4350 4444 9.681062 AGTTTAGGTTAATTACAGTGCATACAT 57.319 29.630 0.00 0.00 0.00 2.29
4407 4501 9.131791 ACCAAGGCATTTTATATCTCGTATTTT 57.868 29.630 0.00 0.00 0.00 1.82
4408 4502 8.691661 ACCAAGGCATTTTATATCTCGTATTT 57.308 30.769 0.00 0.00 0.00 1.40
4409 4503 8.567948 CAACCAAGGCATTTTATATCTCGTATT 58.432 33.333 0.00 0.00 0.00 1.89
4410 4504 7.936847 TCAACCAAGGCATTTTATATCTCGTAT 59.063 33.333 0.00 0.00 0.00 3.06
4411 4505 7.276658 TCAACCAAGGCATTTTATATCTCGTA 58.723 34.615 0.00 0.00 0.00 3.43
4412 4506 6.119536 TCAACCAAGGCATTTTATATCTCGT 58.880 36.000 0.00 0.00 0.00 4.18
4413 4507 6.618287 TCAACCAAGGCATTTTATATCTCG 57.382 37.500 0.00 0.00 0.00 4.04
4414 4508 8.169977 TCATCAACCAAGGCATTTTATATCTC 57.830 34.615 0.00 0.00 0.00 2.75
4415 4509 8.000709 TCTCATCAACCAAGGCATTTTATATCT 58.999 33.333 0.00 0.00 0.00 1.98
4416 4510 8.169977 TCTCATCAACCAAGGCATTTTATATC 57.830 34.615 0.00 0.00 0.00 1.63
4417 4511 8.716674 ATCTCATCAACCAAGGCATTTTATAT 57.283 30.769 0.00 0.00 0.00 0.86
4418 4512 8.537728 AATCTCATCAACCAAGGCATTTTATA 57.462 30.769 0.00 0.00 0.00 0.98
4419 4513 7.427989 AATCTCATCAACCAAGGCATTTTAT 57.572 32.000 0.00 0.00 0.00 1.40
4420 4514 6.855763 AATCTCATCAACCAAGGCATTTTA 57.144 33.333 0.00 0.00 0.00 1.52
4421 4515 5.750352 AATCTCATCAACCAAGGCATTTT 57.250 34.783 0.00 0.00 0.00 1.82
4422 4516 5.246656 TCAAATCTCATCAACCAAGGCATTT 59.753 36.000 0.00 0.00 0.00 2.32
4423 4517 4.773674 TCAAATCTCATCAACCAAGGCATT 59.226 37.500 0.00 0.00 0.00 3.56
4424 4518 4.346730 TCAAATCTCATCAACCAAGGCAT 58.653 39.130 0.00 0.00 0.00 4.40
4425 4519 3.760151 CTCAAATCTCATCAACCAAGGCA 59.240 43.478 0.00 0.00 0.00 4.75
4426 4520 3.428589 GCTCAAATCTCATCAACCAAGGC 60.429 47.826 0.00 0.00 0.00 4.35
4427 4521 3.129988 GGCTCAAATCTCATCAACCAAGG 59.870 47.826 0.00 0.00 0.00 3.61
4428 4522 3.129988 GGGCTCAAATCTCATCAACCAAG 59.870 47.826 0.00 0.00 0.00 3.61
4429 4523 3.091545 GGGCTCAAATCTCATCAACCAA 58.908 45.455 0.00 0.00 0.00 3.67
4430 4524 2.309755 AGGGCTCAAATCTCATCAACCA 59.690 45.455 0.00 0.00 0.00 3.67
4431 4525 3.010200 AGGGCTCAAATCTCATCAACC 57.990 47.619 0.00 0.00 0.00 3.77
4432 4526 7.807977 TTTATAGGGCTCAAATCTCATCAAC 57.192 36.000 0.00 0.00 0.00 3.18
4433 4527 7.388776 CGATTTATAGGGCTCAAATCTCATCAA 59.611 37.037 6.37 0.00 36.81 2.57
4434 4528 6.875726 CGATTTATAGGGCTCAAATCTCATCA 59.124 38.462 6.37 0.00 36.81 3.07
4435 4529 7.099764 TCGATTTATAGGGCTCAAATCTCATC 58.900 38.462 6.37 0.00 36.81 2.92
4436 4530 7.009179 TCGATTTATAGGGCTCAAATCTCAT 57.991 36.000 6.37 0.00 36.81 2.90
4437 4531 6.419484 TCGATTTATAGGGCTCAAATCTCA 57.581 37.500 6.37 0.00 36.81 3.27
4438 4532 7.095017 CCTTTCGATTTATAGGGCTCAAATCTC 60.095 40.741 6.37 0.00 36.81 2.75
4439 4533 6.712547 CCTTTCGATTTATAGGGCTCAAATCT 59.287 38.462 6.37 0.00 36.81 2.40
4440 4534 6.072452 CCCTTTCGATTTATAGGGCTCAAATC 60.072 42.308 0.00 0.00 40.84 2.17
4441 4535 5.770162 CCCTTTCGATTTATAGGGCTCAAAT 59.230 40.000 0.00 0.00 40.84 2.32
4442 4536 5.104277 TCCCTTTCGATTTATAGGGCTCAAA 60.104 40.000 0.00 0.00 45.76 2.69
4443 4537 4.410883 TCCCTTTCGATTTATAGGGCTCAA 59.589 41.667 0.00 0.00 45.76 3.02
4444 4538 3.971305 TCCCTTTCGATTTATAGGGCTCA 59.029 43.478 0.00 0.00 45.76 4.26
4445 4539 4.283722 TCTCCCTTTCGATTTATAGGGCTC 59.716 45.833 0.00 0.00 45.76 4.70
4446 4540 4.232091 TCTCCCTTTCGATTTATAGGGCT 58.768 43.478 0.00 0.00 45.76 5.19
4447 4541 4.283722 TCTCTCCCTTTCGATTTATAGGGC 59.716 45.833 0.00 0.00 45.76 5.19
4452 4546 9.853177 ACAAATAATCTCTCCCTTTCGATTTAT 57.147 29.630 0.00 0.00 0.00 1.40
4453 4547 9.681062 AACAAATAATCTCTCCCTTTCGATTTA 57.319 29.630 0.00 0.00 0.00 1.40
4454 4548 8.581253 AACAAATAATCTCTCCCTTTCGATTT 57.419 30.769 0.00 0.00 0.00 2.17
4455 4549 8.581253 AAACAAATAATCTCTCCCTTTCGATT 57.419 30.769 0.00 0.00 0.00 3.34
4456 4550 8.581253 AAAACAAATAATCTCTCCCTTTCGAT 57.419 30.769 0.00 0.00 0.00 3.59
4457 4551 7.120726 GGAAAACAAATAATCTCTCCCTTTCGA 59.879 37.037 0.00 0.00 0.00 3.71
4458 4552 7.121315 AGGAAAACAAATAATCTCTCCCTTTCG 59.879 37.037 0.00 0.00 0.00 3.46
4459 4553 8.354711 AGGAAAACAAATAATCTCTCCCTTTC 57.645 34.615 0.00 0.00 0.00 2.62
4460 4554 8.727100 AAGGAAAACAAATAATCTCTCCCTTT 57.273 30.769 0.00 0.00 0.00 3.11
4461 4555 8.727100 AAAGGAAAACAAATAATCTCTCCCTT 57.273 30.769 0.00 0.00 0.00 3.95
4462 4556 9.822727 TTAAAGGAAAACAAATAATCTCTCCCT 57.177 29.630 0.00 0.00 0.00 4.20
4492 4586 7.639062 ATGTAGGATAGAATCAACCCTTCAT 57.361 36.000 0.00 0.00 32.53 2.57
4527 4621 2.817839 GCCCATTGGTTTGTAGGACTGT 60.818 50.000 1.20 0.00 0.00 3.55
4595 4689 5.415701 CCTTTGCAGCTATTGTTCCTAAGAA 59.584 40.000 0.00 0.00 0.00 2.52
4664 4766 1.750399 CCTGGGTACAGCATGGCAC 60.750 63.158 0.00 0.00 43.62 5.01
4665 4767 2.676608 CCTGGGTACAGCATGGCA 59.323 61.111 0.00 0.00 43.62 4.92
4666 4768 2.124151 CCCTGGGTACAGCATGGC 60.124 66.667 3.97 0.00 43.62 4.40
4667 4769 1.355718 ATCCCCTGGGTACAGCATGG 61.356 60.000 12.71 0.00 43.53 3.66
4668 4770 0.179009 CATCCCCTGGGTACAGCATG 60.179 60.000 12.71 0.34 43.53 4.06
4669 4771 1.355718 CCATCCCCTGGGTACAGCAT 61.356 60.000 12.71 0.00 43.53 3.79
4670 4772 2.000701 CCATCCCCTGGGTACAGCA 61.001 63.158 12.71 0.00 43.53 4.41
4671 4773 2.919043 CCATCCCCTGGGTACAGC 59.081 66.667 12.71 0.00 43.53 4.40
4672 4774 1.355718 ATGCCATCCCCTGGGTACAG 61.356 60.000 12.71 0.00 46.06 2.74
4673 4775 1.308657 ATGCCATCCCCTGGGTACA 60.309 57.895 12.71 2.48 46.06 2.90
4674 4776 1.151450 CATGCCATCCCCTGGGTAC 59.849 63.158 12.71 0.00 46.06 3.34
4675 4777 2.766925 GCATGCCATCCCCTGGGTA 61.767 63.158 12.71 0.00 46.06 3.69
4676 4778 4.147587 GCATGCCATCCCCTGGGT 62.148 66.667 12.71 0.00 46.06 4.51
4677 4779 3.829226 AGCATGCCATCCCCTGGG 61.829 66.667 15.66 5.50 46.06 4.45
4679 4781 1.380785 AACAGCATGCCATCCCCTG 60.381 57.895 15.66 6.69 42.53 4.45
4680 4782 1.380785 CAACAGCATGCCATCCCCT 60.381 57.895 15.66 0.00 42.53 4.79
4681 4783 1.259840 AACAACAGCATGCCATCCCC 61.260 55.000 15.66 0.00 42.53 4.81
4682 4784 0.108520 CAACAACAGCATGCCATCCC 60.109 55.000 15.66 0.00 42.53 3.85
4683 4785 0.604578 ACAACAACAGCATGCCATCC 59.395 50.000 15.66 0.00 42.53 3.51
4684 4786 1.705256 CACAACAACAGCATGCCATC 58.295 50.000 15.66 0.00 42.53 3.51
4685 4787 0.320073 GCACAACAACAGCATGCCAT 60.320 50.000 15.66 0.00 42.53 4.40
4686 4788 1.067749 GCACAACAACAGCATGCCA 59.932 52.632 15.66 0.00 42.53 4.92
4687 4789 0.942410 CAGCACAACAACAGCATGCC 60.942 55.000 15.66 0.00 42.53 4.40
4688 4790 0.942410 CCAGCACAACAACAGCATGC 60.942 55.000 10.51 10.51 42.53 4.06
4689 4791 0.386476 ACCAGCACAACAACAGCATG 59.614 50.000 0.00 0.00 46.00 4.06
4690 4792 0.386476 CACCAGCACAACAACAGCAT 59.614 50.000 0.00 0.00 0.00 3.79
4691 4793 0.964860 ACACCAGCACAACAACAGCA 60.965 50.000 0.00 0.00 0.00 4.41
4692 4794 0.248621 GACACCAGCACAACAACAGC 60.249 55.000 0.00 0.00 0.00 4.40
4693 4795 1.093972 TGACACCAGCACAACAACAG 58.906 50.000 0.00 0.00 0.00 3.16
4694 4796 1.675483 GATGACACCAGCACAACAACA 59.325 47.619 0.00 0.00 0.00 3.33
4695 4797 1.334059 CGATGACACCAGCACAACAAC 60.334 52.381 0.00 0.00 0.00 3.32
4696 4798 0.943673 CGATGACACCAGCACAACAA 59.056 50.000 0.00 0.00 0.00 2.83
4697 4799 0.179059 ACGATGACACCAGCACAACA 60.179 50.000 0.00 0.00 0.00 3.33
4698 4800 0.944386 AACGATGACACCAGCACAAC 59.056 50.000 0.00 0.00 0.00 3.32
4699 4801 2.535012 TAACGATGACACCAGCACAA 57.465 45.000 0.00 0.00 0.00 3.33
4700 4802 2.741517 CAATAACGATGACACCAGCACA 59.258 45.455 0.00 0.00 0.00 4.57
4701 4803 3.000041 TCAATAACGATGACACCAGCAC 59.000 45.455 0.00 0.00 0.00 4.40
4702 4804 3.326836 TCAATAACGATGACACCAGCA 57.673 42.857 0.00 0.00 0.00 4.41
4703 4805 5.984233 TTATCAATAACGATGACACCAGC 57.016 39.130 0.00 0.00 0.00 4.85
4704 4806 6.852853 GCAATTATCAATAACGATGACACCAG 59.147 38.462 0.00 0.00 0.00 4.00
4705 4807 6.238621 GGCAATTATCAATAACGATGACACCA 60.239 38.462 0.00 0.00 0.00 4.17
4706 4808 6.142817 GGCAATTATCAATAACGATGACACC 58.857 40.000 0.00 0.00 0.00 4.16
4707 4809 5.845953 CGGCAATTATCAATAACGATGACAC 59.154 40.000 0.00 0.00 0.00 3.67
4708 4810 5.755861 TCGGCAATTATCAATAACGATGACA 59.244 36.000 0.00 0.00 0.00 3.58
4709 4811 6.223138 TCGGCAATTATCAATAACGATGAC 57.777 37.500 0.00 0.00 0.00 3.06
4710 4812 6.258947 TGTTCGGCAATTATCAATAACGATGA 59.741 34.615 0.00 0.00 0.00 2.92
4711 4813 6.426327 TGTTCGGCAATTATCAATAACGATG 58.574 36.000 0.00 0.00 0.00 3.84
4712 4814 6.612247 TGTTCGGCAATTATCAATAACGAT 57.388 33.333 0.00 0.00 0.00 3.73
4713 4815 6.426327 CATGTTCGGCAATTATCAATAACGA 58.574 36.000 0.00 0.00 0.00 3.85
4714 4816 5.115472 GCATGTTCGGCAATTATCAATAACG 59.885 40.000 0.00 0.00 0.00 3.18
4715 4817 5.402270 GGCATGTTCGGCAATTATCAATAAC 59.598 40.000 0.00 0.00 0.00 1.89
4716 4818 5.068329 TGGCATGTTCGGCAATTATCAATAA 59.932 36.000 0.00 0.00 38.71 1.40
4717 4819 4.582240 TGGCATGTTCGGCAATTATCAATA 59.418 37.500 0.00 0.00 38.71 1.90
4718 4820 3.384146 TGGCATGTTCGGCAATTATCAAT 59.616 39.130 0.00 0.00 38.71 2.57
4719 4821 2.757314 TGGCATGTTCGGCAATTATCAA 59.243 40.909 0.00 0.00 38.71 2.57
4720 4822 2.373224 TGGCATGTTCGGCAATTATCA 58.627 42.857 0.00 0.00 38.71 2.15
4721 4823 3.243501 ACATGGCATGTTCGGCAATTATC 60.244 43.478 26.78 0.00 45.48 1.75
4722 4824 2.694628 ACATGGCATGTTCGGCAATTAT 59.305 40.909 26.78 0.00 45.48 1.28
4723 4825 2.098614 ACATGGCATGTTCGGCAATTA 58.901 42.857 26.78 0.00 45.48 1.40
4724 4826 0.896923 ACATGGCATGTTCGGCAATT 59.103 45.000 26.78 1.23 45.48 2.32
4725 4827 2.582272 ACATGGCATGTTCGGCAAT 58.418 47.368 26.78 2.01 45.48 3.56
4726 4828 4.093966 ACATGGCATGTTCGGCAA 57.906 50.000 26.78 0.00 45.48 4.52
4737 4839 3.512516 GAGGCGCCTGAACATGGC 61.513 66.667 38.41 13.51 46.42 4.40
4738 4840 3.197790 CGAGGCGCCTGAACATGG 61.198 66.667 38.41 6.13 0.00 3.66
4739 4841 2.434884 ACGAGGCGCCTGAACATG 60.435 61.111 38.41 18.01 0.00 3.21
4740 4842 2.125512 GACGAGGCGCCTGAACAT 60.126 61.111 38.41 14.40 0.00 2.71
4741 4843 4.373116 GGACGAGGCGCCTGAACA 62.373 66.667 38.41 0.00 0.00 3.18
4755 4857 1.557651 GTGATTAGCTCGTTCGGGAC 58.442 55.000 0.00 0.00 0.00 4.46
4756 4858 0.458669 GGTGATTAGCTCGTTCGGGA 59.541 55.000 0.00 0.00 0.00 5.14
4757 4859 0.870307 CGGTGATTAGCTCGTTCGGG 60.870 60.000 0.00 0.00 0.00 5.14
4758 4860 0.179145 ACGGTGATTAGCTCGTTCGG 60.179 55.000 0.00 0.00 31.38 4.30
4759 4861 1.320555 CAACGGTGATTAGCTCGTTCG 59.679 52.381 0.00 0.03 42.77 3.95
4760 4862 2.602878 TCAACGGTGATTAGCTCGTTC 58.397 47.619 0.00 0.00 42.77 3.95
4761 4863 2.736144 TCAACGGTGATTAGCTCGTT 57.264 45.000 0.00 3.07 45.02 3.85
4762 4864 2.961526 ATCAACGGTGATTAGCTCGT 57.038 45.000 10.98 0.00 42.03 4.18
4770 4872 1.812571 GTGCCTGAAATCAACGGTGAT 59.187 47.619 10.98 10.98 46.91 3.06
4771 4873 1.234821 GTGCCTGAAATCAACGGTGA 58.765 50.000 5.17 5.17 38.41 4.02
4772 4874 0.110238 CGTGCCTGAAATCAACGGTG 60.110 55.000 0.00 0.00 0.00 4.94
4773 4875 0.250124 TCGTGCCTGAAATCAACGGT 60.250 50.000 6.35 0.00 0.00 4.83
4774 4876 0.871722 TTCGTGCCTGAAATCAACGG 59.128 50.000 6.35 0.00 0.00 4.44
4775 4877 2.900122 ATTCGTGCCTGAAATCAACG 57.100 45.000 0.85 0.85 0.00 4.10
4776 4878 6.378582 TCTAAAATTCGTGCCTGAAATCAAC 58.621 36.000 0.00 0.00 0.00 3.18
4777 4879 6.567687 TCTAAAATTCGTGCCTGAAATCAA 57.432 33.333 0.00 0.00 0.00 2.57
4778 4880 5.391950 GCTCTAAAATTCGTGCCTGAAATCA 60.392 40.000 0.00 0.00 0.00 2.57
4779 4881 5.030936 GCTCTAAAATTCGTGCCTGAAATC 58.969 41.667 0.00 0.00 0.00 2.17
4780 4882 4.702131 AGCTCTAAAATTCGTGCCTGAAAT 59.298 37.500 0.00 0.00 0.00 2.17
4781 4883 4.072131 AGCTCTAAAATTCGTGCCTGAAA 58.928 39.130 0.00 0.00 0.00 2.69
4782 4884 3.674997 AGCTCTAAAATTCGTGCCTGAA 58.325 40.909 0.00 0.00 0.00 3.02
4783 4885 3.334583 AGCTCTAAAATTCGTGCCTGA 57.665 42.857 0.00 0.00 0.00 3.86
4784 4886 3.557595 CCTAGCTCTAAAATTCGTGCCTG 59.442 47.826 0.00 0.00 0.00 4.85
4785 4887 3.451178 TCCTAGCTCTAAAATTCGTGCCT 59.549 43.478 0.00 0.00 0.00 4.75
4786 4888 3.556365 GTCCTAGCTCTAAAATTCGTGCC 59.444 47.826 0.00 0.00 0.00 5.01
4787 4889 4.434520 AGTCCTAGCTCTAAAATTCGTGC 58.565 43.478 0.00 0.00 0.00 5.34
4788 4890 6.254589 CAGAAGTCCTAGCTCTAAAATTCGTG 59.745 42.308 0.00 0.00 0.00 4.35
4789 4891 6.334202 CAGAAGTCCTAGCTCTAAAATTCGT 58.666 40.000 0.00 0.00 0.00 3.85
4790 4892 5.233263 GCAGAAGTCCTAGCTCTAAAATTCG 59.767 44.000 0.00 0.00 0.00 3.34
4791 4893 5.525745 GGCAGAAGTCCTAGCTCTAAAATTC 59.474 44.000 0.00 0.00 0.00 2.17
4792 4894 5.045578 TGGCAGAAGTCCTAGCTCTAAAATT 60.046 40.000 0.00 0.00 0.00 1.82
4793 4895 4.471386 TGGCAGAAGTCCTAGCTCTAAAAT 59.529 41.667 0.00 0.00 0.00 1.82
4794 4896 3.838317 TGGCAGAAGTCCTAGCTCTAAAA 59.162 43.478 0.00 0.00 0.00 1.52
4795 4897 3.195825 GTGGCAGAAGTCCTAGCTCTAAA 59.804 47.826 0.00 0.00 0.00 1.85
4796 4898 2.761208 GTGGCAGAAGTCCTAGCTCTAA 59.239 50.000 0.00 0.00 0.00 2.10
4797 4899 2.291605 TGTGGCAGAAGTCCTAGCTCTA 60.292 50.000 0.00 0.00 0.00 2.43
4798 4900 1.190643 GTGGCAGAAGTCCTAGCTCT 58.809 55.000 0.00 0.00 0.00 4.09
4799 4901 0.898320 TGTGGCAGAAGTCCTAGCTC 59.102 55.000 0.00 0.00 0.00 4.09
4800 4902 1.484240 GATGTGGCAGAAGTCCTAGCT 59.516 52.381 0.00 0.00 0.00 3.32
4801 4903 1.208052 TGATGTGGCAGAAGTCCTAGC 59.792 52.381 0.00 0.00 0.00 3.42
4802 4904 3.494048 GGATGATGTGGCAGAAGTCCTAG 60.494 52.174 0.00 0.00 0.00 3.02
4803 4905 2.435805 GGATGATGTGGCAGAAGTCCTA 59.564 50.000 0.00 0.00 0.00 2.94
4804 4906 1.211457 GGATGATGTGGCAGAAGTCCT 59.789 52.381 0.00 0.00 0.00 3.85
4805 4907 1.211457 AGGATGATGTGGCAGAAGTCC 59.789 52.381 0.00 0.00 0.00 3.85
4806 4908 2.706339 AGGATGATGTGGCAGAAGTC 57.294 50.000 0.00 0.00 0.00 3.01
4807 4909 3.446442 AAAGGATGATGTGGCAGAAGT 57.554 42.857 0.00 0.00 0.00 3.01
4808 4910 4.796038 AAAAAGGATGATGTGGCAGAAG 57.204 40.909 0.00 0.00 0.00 2.85
4826 4928 6.847956 TGTCTTTTATCCGAACGAGAAAAA 57.152 33.333 0.00 0.00 40.26 1.94
4827 4929 6.425721 ACATGTCTTTTATCCGAACGAGAAAA 59.574 34.615 0.00 0.00 38.91 2.29
4828 4930 5.929992 ACATGTCTTTTATCCGAACGAGAAA 59.070 36.000 0.00 0.00 29.85 2.52
4829 4931 5.475719 ACATGTCTTTTATCCGAACGAGAA 58.524 37.500 0.00 0.00 0.00 2.87
4830 4932 5.068234 ACATGTCTTTTATCCGAACGAGA 57.932 39.130 0.00 0.00 0.00 4.04
4831 4933 4.027621 CGACATGTCTTTTATCCGAACGAG 60.028 45.833 22.95 0.00 0.00 4.18
4832 4934 3.855379 CGACATGTCTTTTATCCGAACGA 59.145 43.478 22.95 0.00 0.00 3.85
4833 4935 3.541516 GCGACATGTCTTTTATCCGAACG 60.542 47.826 22.95 7.27 0.00 3.95
4834 4936 3.617263 AGCGACATGTCTTTTATCCGAAC 59.383 43.478 22.95 0.00 0.00 3.95
4835 4937 3.616821 CAGCGACATGTCTTTTATCCGAA 59.383 43.478 22.95 0.00 0.00 4.30
4836 4938 3.186909 CAGCGACATGTCTTTTATCCGA 58.813 45.455 22.95 0.00 0.00 4.55
4837 4939 2.285834 GCAGCGACATGTCTTTTATCCG 60.286 50.000 22.95 9.40 0.00 4.18
4838 4940 2.285834 CGCAGCGACATGTCTTTTATCC 60.286 50.000 22.95 4.80 0.00 2.59
4839 4941 2.603110 TCGCAGCGACATGTCTTTTATC 59.397 45.455 22.95 6.89 0.00 1.75
4840 4942 2.616960 TCGCAGCGACATGTCTTTTAT 58.383 42.857 22.95 2.18 0.00 1.40
4841 4943 2.073117 TCGCAGCGACATGTCTTTTA 57.927 45.000 22.95 1.76 0.00 1.52
4842 4944 1.069906 GTTCGCAGCGACATGTCTTTT 60.070 47.619 19.37 6.08 34.89 2.27
4843 4945 0.512952 GTTCGCAGCGACATGTCTTT 59.487 50.000 19.37 8.57 34.89 2.52
4844 4946 1.617755 CGTTCGCAGCGACATGTCTT 61.618 55.000 19.37 8.93 34.89 3.01
4845 4947 2.088763 CGTTCGCAGCGACATGTCT 61.089 57.895 19.37 2.85 34.89 3.41
4846 4948 2.391821 CGTTCGCAGCGACATGTC 59.608 61.111 19.37 16.21 34.89 3.06
4847 4949 3.777925 GCGTTCGCAGCGACATGT 61.778 61.111 19.37 0.00 34.89 3.21
4848 4950 4.505217 GGCGTTCGCAGCGACATG 62.505 66.667 19.37 14.81 37.32 3.21
4849 4951 4.742201 AGGCGTTCGCAGCGACAT 62.742 61.111 19.37 0.11 40.33 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.