Multiple sequence alignment - TraesCS7B01G179400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G179400 chr7B 100.000 2774 0 0 1 2774 264004221 264006994 0.000000e+00 5123.0
1 TraesCS7B01G179400 chr7B 91.440 257 18 4 2521 2774 466989493 466989238 1.580000e-92 350.0
2 TraesCS7B01G179400 chr7B 87.562 201 23 2 2527 2726 629069296 629069097 5.970000e-57 231.0
3 TraesCS7B01G179400 chr7B 76.596 188 26 15 662 840 167032905 167033083 1.370000e-13 87.9
4 TraesCS7B01G179400 chr7B 94.444 36 2 0 831 866 612320033 612320068 3.860000e-04 56.5
5 TraesCS7B01G179400 chr7A 94.462 1264 43 9 964 2221 307378359 307377117 0.000000e+00 1921.0
6 TraesCS7B01G179400 chr7A 95.510 245 11 0 2221 2465 307377044 307376800 2.590000e-105 392.0
7 TraesCS7B01G179400 chr7A 94.872 39 2 0 831 869 79229574 79229612 8.300000e-06 62.1
8 TraesCS7B01G179400 chr2D 91.871 1267 49 19 964 2216 483066999 483068225 0.000000e+00 1720.0
9 TraesCS7B01G179400 chr2D 81.802 555 82 16 1 551 480967270 480967809 5.450000e-122 448.0
10 TraesCS7B01G179400 chr2D 87.854 247 14 6 2220 2465 483068301 483068532 2.720000e-70 276.0
11 TraesCS7B01G179400 chr2D 89.796 49 5 0 2041 2089 174242459 174242411 2.310000e-06 63.9
12 TraesCS7B01G179400 chr2A 91.179 1247 58 21 966 2209 625564837 625566034 0.000000e+00 1646.0
13 TraesCS7B01G179400 chr2A 82.298 322 43 12 229 544 718266603 718266916 1.640000e-67 267.0
14 TraesCS7B01G179400 chr2A 86.640 247 15 2 2220 2465 625566119 625566348 9.860000e-65 257.0
15 TraesCS7B01G179400 chr2A 79.562 137 21 7 716 846 535239524 535239659 1.060000e-14 91.6
16 TraesCS7B01G179400 chr2B 90.033 1214 51 19 1030 2221 567577954 567579119 0.000000e+00 1507.0
17 TraesCS7B01G179400 chr2B 93.627 659 19 9 1030 1682 567576498 567577139 0.000000e+00 963.0
18 TraesCS7B01G179400 chr2B 93.927 247 14 1 2220 2465 567579208 567579454 3.370000e-99 372.0
19 TraesCS7B01G179400 chr2B 91.304 46 4 0 966 1011 567576451 567576496 2.310000e-06 63.9
20 TraesCS7B01G179400 chr2B 94.444 36 2 0 831 866 464602521 464602556 3.860000e-04 56.5
21 TraesCS7B01G179400 chr2B 92.308 39 3 0 831 869 666076678 666076640 3.860000e-04 56.5
22 TraesCS7B01G179400 chr7D 94.794 826 27 9 964 1784 273855539 273854725 0.000000e+00 1273.0
23 TraesCS7B01G179400 chr7D 94.514 401 16 3 1825 2221 273854717 273854319 5.080000e-172 614.0
24 TraesCS7B01G179400 chr7D 94.286 245 14 0 2221 2465 273854246 273854002 2.610000e-100 375.0
25 TraesCS7B01G179400 chr7D 81.553 309 47 9 301 603 449866289 449866593 2.130000e-61 246.0
26 TraesCS7B01G179400 chr7D 80.663 181 18 14 668 840 51002232 51002403 1.040000e-24 124.0
27 TraesCS7B01G179400 chr7D 92.683 41 1 2 2451 2490 285672831 285672870 1.070000e-04 58.4
28 TraesCS7B01G179400 chr5A 83.390 590 82 13 20 603 98031282 98031861 1.460000e-147 532.0
29 TraesCS7B01G179400 chr3D 83.906 553 82 6 3 551 548596606 548597155 3.170000e-144 521.0
30 TraesCS7B01G179400 chr6D 81.481 594 84 15 1 589 323003496 323004068 5.410000e-127 464.0
31 TraesCS7B01G179400 chr6D 78.421 190 24 11 662 842 362957093 362957274 1.050000e-19 108.0
32 TraesCS7B01G179400 chr6D 94.286 35 2 0 831 865 11101309 11101343 1.000000e-03 54.7
33 TraesCS7B01G179400 chr1B 83.400 500 75 8 16 512 584162661 584162167 9.060000e-125 457.0
34 TraesCS7B01G179400 chr1B 91.406 256 20 2 2521 2774 564894345 564894600 1.580000e-92 350.0
35 TraesCS7B01G179400 chr5B 93.725 255 15 1 2521 2774 272173305 272173051 5.610000e-102 381.0
36 TraesCS7B01G179400 chr5B 78.752 593 88 23 8 591 128876440 128875877 2.030000e-96 363.0
37 TraesCS7B01G179400 chr5B 85.470 117 17 0 1216 1332 697499833 697499717 3.750000e-24 122.0
38 TraesCS7B01G179400 chr3B 92.969 256 15 3 2521 2774 354018203 354018457 1.210000e-98 370.0
39 TraesCS7B01G179400 chr3B 91.797 256 18 3 2521 2774 554485528 554485274 1.220000e-93 353.0
40 TraesCS7B01G179400 chr4A 92.188 256 18 2 2521 2774 737941800 737941545 7.300000e-96 361.0
41 TraesCS7B01G179400 chr4A 91.797 256 17 4 2521 2774 695560418 695560671 1.220000e-93 353.0
42 TraesCS7B01G179400 chr4A 91.406 256 20 2 2521 2774 646079654 646079399 1.580000e-92 350.0
43 TraesCS7B01G179400 chr4A 78.299 341 56 14 296 626 668496106 668495774 1.300000e-48 204.0
44 TraesCS7B01G179400 chr4A 85.470 117 17 0 1216 1332 615164054 615163938 3.750000e-24 122.0
45 TraesCS7B01G179400 chr4A 82.877 146 12 10 464 603 701926026 701925888 4.850000e-23 119.0
46 TraesCS7B01G179400 chrUn 78.487 595 90 27 8 591 17266227 17266794 3.400000e-94 355.0
47 TraesCS7B01G179400 chrUn 78.689 549 83 24 8 551 15379004 15379523 4.430000e-88 335.0
48 TraesCS7B01G179400 chrUn 90.000 250 23 2 2526 2774 470277678 470277430 3.450000e-84 322.0
49 TraesCS7B01G179400 chrUn 94.444 36 2 0 831 866 55791461 55791496 3.860000e-04 56.5
50 TraesCS7B01G179400 chr1D 91.765 255 19 2 2521 2774 352188840 352188587 1.220000e-93 353.0
51 TraesCS7B01G179400 chr1D 100.000 28 0 0 2493 2520 377953275 377953302 5.000000e-03 52.8
52 TraesCS7B01G179400 chr6B 78.053 606 94 23 8 603 531004379 531004955 2.050000e-91 346.0
53 TraesCS7B01G179400 chr6B 79.630 108 15 4 1984 2084 80968315 80968422 1.380000e-08 71.3
54 TraesCS7B01G179400 chr6B 92.308 39 3 0 831 869 115329615 115329577 3.860000e-04 56.5
55 TraesCS7B01G179400 chr6B 92.308 39 3 0 831 869 503875626 503875588 3.860000e-04 56.5
56 TraesCS7B01G179400 chr4D 80.892 314 47 11 297 603 305154084 305153777 4.620000e-58 235.0
57 TraesCS7B01G179400 chr4D 79.412 204 21 18 651 840 379346089 379345893 1.040000e-24 124.0
58 TraesCS7B01G179400 chr4D 78.495 186 13 19 665 840 487919993 487919825 2.270000e-16 97.1
59 TraesCS7B01G179400 chr6A 77.844 167 25 11 676 840 26826120 26826276 2.940000e-15 93.5
60 TraesCS7B01G179400 chr6A 75.521 192 27 17 666 840 85284877 85285065 2.960000e-10 76.8
61 TraesCS7B01G179400 chr5D 78.981 157 18 13 694 840 4802749 4802900 2.940000e-15 93.5
62 TraesCS7B01G179400 chr5D 77.515 169 21 15 676 840 318873825 318873670 4.920000e-13 86.1
63 TraesCS7B01G179400 chr4B 92.308 39 3 0 831 869 57520789 57520751 3.860000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G179400 chr7B 264004221 264006994 2773 False 5123.000 5123 100.000000 1 2774 1 chr7B.!!$F2 2773
1 TraesCS7B01G179400 chr7A 307376800 307378359 1559 True 1156.500 1921 94.986000 964 2465 2 chr7A.!!$R1 1501
2 TraesCS7B01G179400 chr2D 483066999 483068532 1533 False 998.000 1720 89.862500 964 2465 2 chr2D.!!$F2 1501
3 TraesCS7B01G179400 chr2D 480967270 480967809 539 False 448.000 448 81.802000 1 551 1 chr2D.!!$F1 550
4 TraesCS7B01G179400 chr2A 625564837 625566348 1511 False 951.500 1646 88.909500 966 2465 2 chr2A.!!$F3 1499
5 TraesCS7B01G179400 chr2B 567576451 567579454 3003 False 726.475 1507 92.222750 966 2465 4 chr2B.!!$F2 1499
6 TraesCS7B01G179400 chr7D 273854002 273855539 1537 True 754.000 1273 94.531333 964 2465 3 chr7D.!!$R1 1501
7 TraesCS7B01G179400 chr5A 98031282 98031861 579 False 532.000 532 83.390000 20 603 1 chr5A.!!$F1 583
8 TraesCS7B01G179400 chr3D 548596606 548597155 549 False 521.000 521 83.906000 3 551 1 chr3D.!!$F1 548
9 TraesCS7B01G179400 chr6D 323003496 323004068 572 False 464.000 464 81.481000 1 589 1 chr6D.!!$F2 588
10 TraesCS7B01G179400 chr5B 128875877 128876440 563 True 363.000 363 78.752000 8 591 1 chr5B.!!$R1 583
11 TraesCS7B01G179400 chrUn 17266227 17266794 567 False 355.000 355 78.487000 8 591 1 chrUn.!!$F2 583
12 TraesCS7B01G179400 chrUn 15379004 15379523 519 False 335.000 335 78.689000 8 551 1 chrUn.!!$F1 543
13 TraesCS7B01G179400 chr6B 531004379 531004955 576 False 346.000 346 78.053000 8 603 1 chr6B.!!$F2 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
958 974 0.036952 GACTGCTGCCTGCTGACTAA 60.037 55.0 7.43 0.0 42.27 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2525 4145 0.035247 TTTACCGATCCGTTTGGGGG 60.035 55.0 0.0 0.0 36.01 5.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.911390 ACCAGTTGAGCTAGCAGTTATTT 58.089 39.130 18.83 0.00 0.00 1.40
40 41 5.645497 CCAGTTGAGCTAGCAGTTATTTCTT 59.355 40.000 18.83 0.00 0.00 2.52
193 199 8.660373 TGCGAACAAAATTTTACAACTGAAATT 58.340 25.926 2.44 0.00 37.12 1.82
221 229 7.928908 TCGAAAATCAGGAACATTTTCTTTG 57.071 32.000 13.32 2.40 43.59 2.77
227 235 9.617523 AAATCAGGAACATTTTCTTTGAAACAT 57.382 25.926 4.33 0.00 32.67 2.71
231 239 9.048446 CAGGAACATTTTCTTTGAAACATGAAT 57.952 29.630 0.00 0.00 31.71 2.57
431 443 6.696441 ACATGTTTTAAACTACCCGAACAA 57.304 33.333 9.33 0.00 31.69 2.83
443 455 6.452242 ACTACCCGAACAATTTTTGGAATTC 58.548 36.000 0.00 0.00 34.12 2.17
449 461 6.145371 CCGAACAATTTTTGGAATTCGTGAAT 59.855 34.615 0.00 0.00 35.91 2.57
450 462 7.307101 CCGAACAATTTTTGGAATTCGTGAATT 60.307 33.333 7.52 7.52 43.14 2.17
451 463 8.061268 CGAACAATTTTTGGAATTCGTGAATTT 58.939 29.630 9.06 0.00 40.77 1.82
452 464 9.715123 GAACAATTTTTGGAATTCGTGAATTTT 57.285 25.926 9.06 0.00 40.77 1.82
522 537 6.256539 TGCACATTTTCTTAATTTTGCGAACA 59.743 30.769 0.00 0.00 0.00 3.18
524 539 7.798052 GCACATTTTCTTAATTTTGCGAACAAT 59.202 29.630 0.00 0.00 35.21 2.71
567 583 6.752335 TTTTTGATGCGAGAACATTTTCTG 57.248 33.333 0.00 0.00 42.53 3.02
568 584 5.687770 TTTGATGCGAGAACATTTTCTGA 57.312 34.783 0.00 0.00 42.53 3.27
569 585 5.687770 TTGATGCGAGAACATTTTCTGAA 57.312 34.783 0.00 0.00 42.53 3.02
570 586 5.885230 TGATGCGAGAACATTTTCTGAAT 57.115 34.783 0.00 0.00 42.53 2.57
571 587 6.258230 TGATGCGAGAACATTTTCTGAATT 57.742 33.333 0.00 0.00 42.53 2.17
572 588 6.680810 TGATGCGAGAACATTTTCTGAATTT 58.319 32.000 0.00 0.00 42.53 1.82
573 589 7.815641 TGATGCGAGAACATTTTCTGAATTTA 58.184 30.769 0.00 0.00 42.53 1.40
574 590 7.964559 TGATGCGAGAACATTTTCTGAATTTAG 59.035 33.333 0.00 0.00 42.53 1.85
575 591 6.611381 TGCGAGAACATTTTCTGAATTTAGG 58.389 36.000 0.00 0.00 42.53 2.69
576 592 6.206634 TGCGAGAACATTTTCTGAATTTAGGT 59.793 34.615 0.00 0.00 42.53 3.08
577 593 6.743172 GCGAGAACATTTTCTGAATTTAGGTC 59.257 38.462 0.00 0.00 42.53 3.85
578 594 7.244192 CGAGAACATTTTCTGAATTTAGGTCC 58.756 38.462 0.00 0.00 42.53 4.46
579 595 7.094805 CGAGAACATTTTCTGAATTTAGGTCCA 60.095 37.037 0.00 0.00 42.53 4.02
580 596 8.477419 AGAACATTTTCTGAATTTAGGTCCAA 57.523 30.769 0.00 0.00 40.82 3.53
581 597 8.923270 AGAACATTTTCTGAATTTAGGTCCAAA 58.077 29.630 0.00 0.00 40.82 3.28
582 598 9.541143 GAACATTTTCTGAATTTAGGTCCAAAA 57.459 29.630 0.00 0.00 0.00 2.44
589 605 9.541143 TTCTGAATTTAGGTCCAAAATTTGAAC 57.459 29.630 7.37 0.00 36.82 3.18
590 606 8.923270 TCTGAATTTAGGTCCAAAATTTGAACT 58.077 29.630 7.37 4.39 36.82 3.01
591 607 9.196552 CTGAATTTAGGTCCAAAATTTGAACTC 57.803 33.333 7.37 0.00 36.82 3.01
592 608 8.700051 TGAATTTAGGTCCAAAATTTGAACTCA 58.300 29.630 7.37 0.00 36.82 3.41
593 609 8.887036 AATTTAGGTCCAAAATTTGAACTCAC 57.113 30.769 7.37 0.00 33.78 3.51
594 610 4.568152 AGGTCCAAAATTTGAACTCACG 57.432 40.909 7.37 0.00 0.00 4.35
595 611 4.204012 AGGTCCAAAATTTGAACTCACGA 58.796 39.130 7.37 0.00 0.00 4.35
596 612 4.642885 AGGTCCAAAATTTGAACTCACGAA 59.357 37.500 7.37 0.00 0.00 3.85
597 613 4.738252 GGTCCAAAATTTGAACTCACGAAC 59.262 41.667 7.37 0.00 0.00 3.95
598 614 5.336744 GTCCAAAATTTGAACTCACGAACA 58.663 37.500 7.37 0.00 0.00 3.18
599 615 5.802956 GTCCAAAATTTGAACTCACGAACAA 59.197 36.000 7.37 0.00 0.00 2.83
600 616 6.475402 GTCCAAAATTTGAACTCACGAACAAT 59.525 34.615 7.37 0.00 0.00 2.71
601 617 7.010091 GTCCAAAATTTGAACTCACGAACAATT 59.990 33.333 7.37 0.00 0.00 2.32
602 618 7.547370 TCCAAAATTTGAACTCACGAACAATTT 59.453 29.630 7.37 0.00 0.00 1.82
603 619 8.174422 CCAAAATTTGAACTCACGAACAATTTT 58.826 29.630 7.37 6.18 31.74 1.82
604 620 9.540431 CAAAATTTGAACTCACGAACAATTTTT 57.460 25.926 0.00 0.00 36.83 1.94
742 758 9.927668 AAGAAGAAAAGAAACAGAAAAATGACA 57.072 25.926 0.00 0.00 0.00 3.58
743 759 9.927668 AGAAGAAAAGAAACAGAAAAATGACAA 57.072 25.926 0.00 0.00 0.00 3.18
753 769 9.676195 AAACAGAAAAATGACAAAAACAAAAGG 57.324 25.926 0.00 0.00 0.00 3.11
754 770 7.815641 ACAGAAAAATGACAAAAACAAAAGGG 58.184 30.769 0.00 0.00 0.00 3.95
755 771 7.094420 ACAGAAAAATGACAAAAACAAAAGGGG 60.094 33.333 0.00 0.00 0.00 4.79
756 772 7.120432 CAGAAAAATGACAAAAACAAAAGGGGA 59.880 33.333 0.00 0.00 0.00 4.81
757 773 7.667635 AGAAAAATGACAAAAACAAAAGGGGAA 59.332 29.630 0.00 0.00 0.00 3.97
758 774 7.767250 AAAATGACAAAAACAAAAGGGGAAA 57.233 28.000 0.00 0.00 0.00 3.13
759 775 7.767250 AAATGACAAAAACAAAAGGGGAAAA 57.233 28.000 0.00 0.00 0.00 2.29
760 776 6.751514 ATGACAAAAACAAAAGGGGAAAAC 57.248 33.333 0.00 0.00 0.00 2.43
761 777 4.691216 TGACAAAAACAAAAGGGGAAAACG 59.309 37.500 0.00 0.00 0.00 3.60
762 778 4.895961 ACAAAAACAAAAGGGGAAAACGA 58.104 34.783 0.00 0.00 0.00 3.85
763 779 5.306394 ACAAAAACAAAAGGGGAAAACGAA 58.694 33.333 0.00 0.00 0.00 3.85
764 780 5.763698 ACAAAAACAAAAGGGGAAAACGAAA 59.236 32.000 0.00 0.00 0.00 3.46
765 781 6.262496 ACAAAAACAAAAGGGGAAAACGAAAA 59.738 30.769 0.00 0.00 0.00 2.29
766 782 5.866335 AAACAAAAGGGGAAAACGAAAAC 57.134 34.783 0.00 0.00 0.00 2.43
767 783 4.538746 ACAAAAGGGGAAAACGAAAACA 57.461 36.364 0.00 0.00 0.00 2.83
768 784 4.895961 ACAAAAGGGGAAAACGAAAACAA 58.104 34.783 0.00 0.00 0.00 2.83
769 785 5.306394 ACAAAAGGGGAAAACGAAAACAAA 58.694 33.333 0.00 0.00 0.00 2.83
770 786 5.763698 ACAAAAGGGGAAAACGAAAACAAAA 59.236 32.000 0.00 0.00 0.00 2.44
771 787 5.866335 AAAGGGGAAAACGAAAACAAAAC 57.134 34.783 0.00 0.00 0.00 2.43
772 788 4.538746 AGGGGAAAACGAAAACAAAACA 57.461 36.364 0.00 0.00 0.00 2.83
773 789 4.500127 AGGGGAAAACGAAAACAAAACAG 58.500 39.130 0.00 0.00 0.00 3.16
774 790 4.221041 AGGGGAAAACGAAAACAAAACAGA 59.779 37.500 0.00 0.00 0.00 3.41
775 791 4.930405 GGGGAAAACGAAAACAAAACAGAA 59.070 37.500 0.00 0.00 0.00 3.02
776 792 5.408909 GGGGAAAACGAAAACAAAACAGAAA 59.591 36.000 0.00 0.00 0.00 2.52
777 793 6.092944 GGGGAAAACGAAAACAAAACAGAAAT 59.907 34.615 0.00 0.00 0.00 2.17
778 794 7.361371 GGGGAAAACGAAAACAAAACAGAAATT 60.361 33.333 0.00 0.00 0.00 1.82
779 795 8.657729 GGGAAAACGAAAACAAAACAGAAATTA 58.342 29.630 0.00 0.00 0.00 1.40
785 801 9.425577 ACGAAAACAAAACAGAAATTAAAAGGA 57.574 25.926 0.00 0.00 0.00 3.36
791 807 8.661257 ACAAAACAGAAATTAAAAGGAAAACCG 58.339 29.630 0.00 0.00 0.00 4.44
792 808 7.780008 AAACAGAAATTAAAAGGAAAACCGG 57.220 32.000 0.00 0.00 0.00 5.28
793 809 6.474140 ACAGAAATTAAAAGGAAAACCGGT 57.526 33.333 0.00 0.00 0.00 5.28
794 810 7.585579 ACAGAAATTAAAAGGAAAACCGGTA 57.414 32.000 8.00 0.00 0.00 4.02
795 811 8.009622 ACAGAAATTAAAAGGAAAACCGGTAA 57.990 30.769 8.00 0.00 0.00 2.85
796 812 8.476447 ACAGAAATTAAAAGGAAAACCGGTAAA 58.524 29.630 8.00 0.00 0.00 2.01
797 813 9.315525 CAGAAATTAAAAGGAAAACCGGTAAAA 57.684 29.630 8.00 0.00 0.00 1.52
798 814 9.537192 AGAAATTAAAAGGAAAACCGGTAAAAG 57.463 29.630 8.00 0.00 0.00 2.27
799 815 9.531942 GAAATTAAAAGGAAAACCGGTAAAAGA 57.468 29.630 8.00 0.00 0.00 2.52
800 816 9.887629 AAATTAAAAGGAAAACCGGTAAAAGAA 57.112 25.926 8.00 0.00 0.00 2.52
801 817 9.887629 AATTAAAAGGAAAACCGGTAAAAGAAA 57.112 25.926 8.00 0.00 0.00 2.52
802 818 9.887629 ATTAAAAGGAAAACCGGTAAAAGAAAA 57.112 25.926 8.00 0.00 0.00 2.29
803 819 9.887629 TTAAAAGGAAAACCGGTAAAAGAAAAT 57.112 25.926 8.00 0.00 0.00 1.82
805 821 9.887629 AAAAGGAAAACCGGTAAAAGAAAATAA 57.112 25.926 8.00 0.00 0.00 1.40
806 822 9.887629 AAAGGAAAACCGGTAAAAGAAAATAAA 57.112 25.926 8.00 0.00 0.00 1.40
808 824 9.701098 AGGAAAACCGGTAAAAGAAAATAAATC 57.299 29.630 8.00 0.00 0.00 2.17
809 825 8.641155 GGAAAACCGGTAAAAGAAAATAAATCG 58.359 33.333 8.00 0.00 0.00 3.34
810 826 8.523523 AAAACCGGTAAAAGAAAATAAATCGG 57.476 30.769 8.00 0.00 39.59 4.18
811 827 6.822667 ACCGGTAAAAGAAAATAAATCGGT 57.177 33.333 4.49 0.00 41.57 4.69
812 828 7.218228 ACCGGTAAAAGAAAATAAATCGGTT 57.782 32.000 4.49 0.00 43.45 4.44
813 829 7.307694 ACCGGTAAAAGAAAATAAATCGGTTC 58.692 34.615 4.49 0.00 43.45 3.62
814 830 7.040548 ACCGGTAAAAGAAAATAAATCGGTTCA 60.041 33.333 4.49 0.00 43.45 3.18
815 831 7.483691 CCGGTAAAAGAAAATAAATCGGTTCAG 59.516 37.037 0.00 0.00 0.00 3.02
816 832 7.483691 CGGTAAAAGAAAATAAATCGGTTCAGG 59.516 37.037 0.00 0.00 0.00 3.86
817 833 7.758076 GGTAAAAGAAAATAAATCGGTTCAGGG 59.242 37.037 0.00 0.00 0.00 4.45
818 834 7.533289 AAAAGAAAATAAATCGGTTCAGGGA 57.467 32.000 0.00 0.00 0.00 4.20
819 835 7.533289 AAAGAAAATAAATCGGTTCAGGGAA 57.467 32.000 0.00 0.00 0.00 3.97
820 836 6.510879 AGAAAATAAATCGGTTCAGGGAAC 57.489 37.500 0.54 0.54 41.32 3.62
863 879 3.412237 TCTAGAAGGTTCCCAAAACCG 57.588 47.619 0.00 0.00 44.82 4.44
864 880 2.039348 TCTAGAAGGTTCCCAAAACCGG 59.961 50.000 0.00 0.00 44.82 5.28
865 881 0.848053 AGAAGGTTCCCAAAACCGGA 59.152 50.000 9.46 0.00 44.82 5.14
866 882 1.427753 AGAAGGTTCCCAAAACCGGAT 59.572 47.619 9.46 0.00 44.82 4.18
867 883 2.645797 AGAAGGTTCCCAAAACCGGATA 59.354 45.455 9.46 0.00 44.82 2.59
868 884 3.074836 AGAAGGTTCCCAAAACCGGATAA 59.925 43.478 9.46 0.00 44.82 1.75
869 885 3.750501 AGGTTCCCAAAACCGGATAAT 57.249 42.857 9.46 0.00 44.82 1.28
870 886 4.866327 AGGTTCCCAAAACCGGATAATA 57.134 40.909 9.46 0.00 44.82 0.98
871 887 5.397553 AGGTTCCCAAAACCGGATAATAT 57.602 39.130 9.46 0.00 44.82 1.28
872 888 5.773091 AGGTTCCCAAAACCGGATAATATT 58.227 37.500 9.46 0.00 44.82 1.28
873 889 5.596772 AGGTTCCCAAAACCGGATAATATTG 59.403 40.000 9.46 0.00 44.82 1.90
874 890 5.361571 GGTTCCCAAAACCGGATAATATTGT 59.638 40.000 9.46 0.00 0.00 2.71
875 891 6.546772 GGTTCCCAAAACCGGATAATATTGTA 59.453 38.462 9.46 0.00 0.00 2.41
876 892 7.420002 GTTCCCAAAACCGGATAATATTGTAC 58.580 38.462 9.46 0.00 0.00 2.90
877 893 6.660800 TCCCAAAACCGGATAATATTGTACA 58.339 36.000 9.46 0.00 0.00 2.90
878 894 6.768861 TCCCAAAACCGGATAATATTGTACAG 59.231 38.462 9.46 0.00 0.00 2.74
879 895 6.016610 CCCAAAACCGGATAATATTGTACAGG 60.017 42.308 9.46 1.39 0.00 4.00
880 896 6.768861 CCAAAACCGGATAATATTGTACAGGA 59.231 38.462 9.46 0.00 0.00 3.86
881 897 7.283580 CCAAAACCGGATAATATTGTACAGGAA 59.716 37.037 9.46 0.00 0.00 3.36
882 898 7.797038 AAACCGGATAATATTGTACAGGAAC 57.203 36.000 9.46 0.00 0.00 3.62
883 899 6.742559 ACCGGATAATATTGTACAGGAACT 57.257 37.500 9.46 0.00 43.88 3.01
896 912 2.579410 AGGAACTGGGTACGCAAATT 57.421 45.000 14.12 10.91 37.18 1.82
897 913 2.159382 AGGAACTGGGTACGCAAATTG 58.841 47.619 14.12 4.81 37.18 2.32
898 914 1.201414 GGAACTGGGTACGCAAATTGG 59.799 52.381 14.12 4.44 0.00 3.16
899 915 2.156098 GAACTGGGTACGCAAATTGGA 58.844 47.619 14.12 0.00 0.00 3.53
900 916 1.530323 ACTGGGTACGCAAATTGGAC 58.470 50.000 14.12 0.00 0.00 4.02
901 917 1.073284 ACTGGGTACGCAAATTGGACT 59.927 47.619 14.12 0.00 0.00 3.85
902 918 1.468520 CTGGGTACGCAAATTGGACTG 59.531 52.381 14.12 0.00 0.00 3.51
903 919 0.808755 GGGTACGCAAATTGGACTGG 59.191 55.000 4.83 0.00 0.00 4.00
904 920 0.170339 GGTACGCAAATTGGACTGGC 59.830 55.000 0.00 0.00 0.00 4.85
905 921 0.170339 GTACGCAAATTGGACTGGCC 59.830 55.000 0.00 0.00 37.10 5.36
906 922 0.963355 TACGCAAATTGGACTGGCCC 60.963 55.000 0.00 0.00 34.97 5.80
907 923 2.274645 CGCAAATTGGACTGGCCCA 61.275 57.895 0.00 0.00 34.97 5.36
908 924 1.606885 CGCAAATTGGACTGGCCCAT 61.607 55.000 0.00 0.00 35.87 4.00
909 925 0.176449 GCAAATTGGACTGGCCCATC 59.824 55.000 0.00 0.00 35.87 3.51
910 926 1.559368 CAAATTGGACTGGCCCATCA 58.441 50.000 0.00 0.00 35.87 3.07
911 927 1.205417 CAAATTGGACTGGCCCATCAC 59.795 52.381 0.00 0.00 35.87 3.06
912 928 0.680921 AATTGGACTGGCCCATCACG 60.681 55.000 0.00 0.00 35.87 4.35
913 929 1.852157 ATTGGACTGGCCCATCACGT 61.852 55.000 0.00 0.00 35.87 4.49
914 930 2.063015 TTGGACTGGCCCATCACGTT 62.063 55.000 0.00 0.00 35.87 3.99
915 931 2.040544 GGACTGGCCCATCACGTTG 61.041 63.158 0.00 0.00 0.00 4.10
916 932 2.672996 ACTGGCCCATCACGTTGC 60.673 61.111 0.00 0.00 0.00 4.17
917 933 2.360350 CTGGCCCATCACGTTGCT 60.360 61.111 0.00 0.00 0.00 3.91
918 934 2.359850 TGGCCCATCACGTTGCTC 60.360 61.111 0.00 0.00 0.00 4.26
919 935 3.499737 GGCCCATCACGTTGCTCG 61.500 66.667 0.00 0.84 46.00 5.03
920 936 3.499737 GCCCATCACGTTGCTCGG 61.500 66.667 6.79 0.00 44.69 4.63
921 937 2.047274 CCCATCACGTTGCTCGGT 60.047 61.111 6.79 0.00 44.69 4.69
922 938 2.100631 CCCATCACGTTGCTCGGTC 61.101 63.158 6.79 0.00 44.69 4.79
923 939 2.444624 CCATCACGTTGCTCGGTCG 61.445 63.158 6.79 0.00 44.69 4.79
924 940 2.809601 ATCACGTTGCTCGGTCGC 60.810 61.111 6.79 0.00 44.69 5.19
925 941 3.282745 ATCACGTTGCTCGGTCGCT 62.283 57.895 6.79 0.00 44.69 4.93
926 942 2.765250 ATCACGTTGCTCGGTCGCTT 62.765 55.000 6.79 0.00 44.69 4.68
927 943 2.733593 ACGTTGCTCGGTCGCTTC 60.734 61.111 6.79 0.00 44.69 3.86
928 944 2.430921 CGTTGCTCGGTCGCTTCT 60.431 61.111 0.00 0.00 35.71 2.85
929 945 2.437343 CGTTGCTCGGTCGCTTCTC 61.437 63.158 0.00 0.00 35.71 2.87
930 946 2.095252 GTTGCTCGGTCGCTTCTCC 61.095 63.158 0.00 0.00 0.00 3.71
931 947 2.276116 TTGCTCGGTCGCTTCTCCT 61.276 57.895 0.00 0.00 0.00 3.69
932 948 2.202676 GCTCGGTCGCTTCTCCTG 60.203 66.667 0.00 0.00 0.00 3.86
933 949 2.995872 GCTCGGTCGCTTCTCCTGT 61.996 63.158 0.00 0.00 0.00 4.00
934 950 1.153939 CTCGGTCGCTTCTCCTGTG 60.154 63.158 0.00 0.00 0.00 3.66
935 951 2.811317 CGGTCGCTTCTCCTGTGC 60.811 66.667 0.00 0.00 0.00 4.57
940 956 4.996976 GCTTCTCCTGTGCGAAGA 57.003 55.556 3.43 0.00 39.10 2.87
941 957 2.450619 GCTTCTCCTGTGCGAAGAC 58.549 57.895 3.43 0.00 39.10 3.01
942 958 0.037790 GCTTCTCCTGTGCGAAGACT 60.038 55.000 3.43 0.00 39.10 3.24
943 959 1.707632 CTTCTCCTGTGCGAAGACTG 58.292 55.000 0.00 0.00 39.10 3.51
944 960 0.319900 TTCTCCTGTGCGAAGACTGC 60.320 55.000 0.00 0.00 0.00 4.40
945 961 1.181741 TCTCCTGTGCGAAGACTGCT 61.182 55.000 0.00 0.00 0.00 4.24
946 962 1.005748 TCCTGTGCGAAGACTGCTG 60.006 57.895 0.00 0.00 0.00 4.41
947 963 2.675056 CCTGTGCGAAGACTGCTGC 61.675 63.158 0.00 0.00 0.00 5.25
948 964 2.666190 TGTGCGAAGACTGCTGCC 60.666 61.111 0.00 0.00 0.00 4.85
949 965 2.358003 GTGCGAAGACTGCTGCCT 60.358 61.111 0.00 0.00 0.00 4.75
950 966 2.357881 TGCGAAGACTGCTGCCTG 60.358 61.111 0.00 0.00 0.00 4.85
951 967 3.797546 GCGAAGACTGCTGCCTGC 61.798 66.667 0.00 0.00 43.25 4.85
952 968 2.047465 CGAAGACTGCTGCCTGCT 60.047 61.111 0.00 0.00 43.37 4.24
953 969 2.389020 CGAAGACTGCTGCCTGCTG 61.389 63.158 0.00 0.00 44.70 4.41
954 970 1.004080 GAAGACTGCTGCCTGCTGA 60.004 57.895 7.43 0.00 42.27 4.26
955 971 1.297456 GAAGACTGCTGCCTGCTGAC 61.297 60.000 7.43 1.55 42.27 3.51
956 972 1.766625 AAGACTGCTGCCTGCTGACT 61.767 55.000 7.43 3.82 44.11 3.41
957 973 0.902048 AGACTGCTGCCTGCTGACTA 60.902 55.000 7.43 0.00 41.67 2.59
958 974 0.036952 GACTGCTGCCTGCTGACTAA 60.037 55.000 7.43 0.00 42.27 2.24
959 975 0.321122 ACTGCTGCCTGCTGACTAAC 60.321 55.000 7.43 0.00 42.27 2.34
960 976 1.003355 TGCTGCCTGCTGACTAACC 60.003 57.895 0.00 0.00 43.37 2.85
961 977 1.003355 GCTGCCTGCTGACTAACCA 60.003 57.895 0.00 0.00 38.95 3.67
962 978 0.606401 GCTGCCTGCTGACTAACCAA 60.606 55.000 0.00 0.00 38.95 3.67
970 986 2.037902 TGCTGACTAACCAACCATTCGA 59.962 45.455 0.00 0.00 0.00 3.71
975 991 2.280628 CTAACCAACCATTCGAGCCTC 58.719 52.381 0.00 0.00 0.00 4.70
978 994 1.815421 CAACCATTCGAGCCTCCCG 60.815 63.158 0.00 0.00 0.00 5.14
979 995 1.987855 AACCATTCGAGCCTCCCGA 60.988 57.895 0.00 0.00 0.00 5.14
1020 1036 1.202879 CCACAAAAGGCCCACTACTCA 60.203 52.381 0.00 0.00 0.00 3.41
1021 1037 1.880027 CACAAAAGGCCCACTACTCAC 59.120 52.381 0.00 0.00 0.00 3.51
1022 1038 1.774856 ACAAAAGGCCCACTACTCACT 59.225 47.619 0.00 0.00 0.00 3.41
1023 1039 2.224548 ACAAAAGGCCCACTACTCACTC 60.225 50.000 0.00 0.00 0.00 3.51
1024 1040 0.984995 AAAGGCCCACTACTCACTCC 59.015 55.000 0.00 0.00 0.00 3.85
1025 1041 1.258445 AAGGCCCACTACTCACTCCG 61.258 60.000 0.00 0.00 0.00 4.63
1026 1042 1.982938 GGCCCACTACTCACTCCGT 60.983 63.158 0.00 0.00 0.00 4.69
1027 1043 1.511768 GCCCACTACTCACTCCGTC 59.488 63.158 0.00 0.00 0.00 4.79
1028 1044 0.966370 GCCCACTACTCACTCCGTCT 60.966 60.000 0.00 0.00 0.00 4.18
1043 1063 1.065701 CCGTCTGTCCAGTCCGATAAG 59.934 57.143 9.53 0.00 0.00 1.73
1107 1127 2.159099 CGAATCGAATCCTCCAGTCCAA 60.159 50.000 0.00 0.00 0.00 3.53
1453 2933 3.561213 CTGCTGCTGATGCGGTCG 61.561 66.667 0.00 0.00 46.77 4.79
1515 3002 3.050089 TCACTAGTCTGTTTTGGGGGAA 58.950 45.455 0.00 0.00 0.00 3.97
1525 3012 6.210584 GTCTGTTTTGGGGGAAAAAGATCATA 59.789 38.462 0.00 0.00 35.27 2.15
1674 3184 3.696051 ACATGATTGTCACAATGCCCTAC 59.304 43.478 8.05 0.00 0.00 3.18
1830 3345 1.271856 TGGCTCATCGGTTGTTAGGA 58.728 50.000 0.00 0.00 0.00 2.94
1867 3385 4.200874 AGGTACTGATCACTAAGGAGACG 58.799 47.826 0.00 0.00 37.18 4.18
2051 3576 7.748691 CCTTTTGGTGGAATTCATTTGATTT 57.251 32.000 7.93 0.00 34.07 2.17
2106 3633 8.499288 AATTCCTAGTCTTCTAATCCTTAGGG 57.501 38.462 0.00 0.00 34.00 3.53
2189 3718 4.083217 ACACAACACAAAAACAGCGTCTTA 60.083 37.500 0.00 0.00 0.00 2.10
2237 3856 4.113354 GGTTATTACTCAGTCTTGCTCCG 58.887 47.826 0.00 0.00 0.00 4.63
2247 3867 0.530744 TCTTGCTCCGTATCTTGCGT 59.469 50.000 0.00 0.00 0.00 5.24
2335 3955 1.690633 TCCCTCCTGCCATCCTCAC 60.691 63.158 0.00 0.00 0.00 3.51
2345 3965 0.957395 CCATCCTCACACTGTGCCAC 60.957 60.000 7.90 0.00 32.98 5.01
2360 3980 1.371183 CCACTGCCGTTCTCTGGAA 59.629 57.895 0.00 0.00 0.00 3.53
2452 4072 8.542497 AGACACAGCGTAGTAAATAAATTCAA 57.458 30.769 0.00 0.00 0.00 2.69
2468 4088 8.779354 ATAAATTCAACGGGATATCTTAGAGC 57.221 34.615 2.05 0.00 0.00 4.09
2469 4089 5.808366 ATTCAACGGGATATCTTAGAGCA 57.192 39.130 2.05 0.00 0.00 4.26
2470 4090 5.607939 TTCAACGGGATATCTTAGAGCAA 57.392 39.130 2.05 0.00 0.00 3.91
2471 4091 4.945246 TCAACGGGATATCTTAGAGCAAC 58.055 43.478 2.05 0.00 0.00 4.17
2472 4092 4.649674 TCAACGGGATATCTTAGAGCAACT 59.350 41.667 2.05 0.00 0.00 3.16
2473 4093 4.857509 ACGGGATATCTTAGAGCAACTC 57.142 45.455 2.05 0.00 0.00 3.01
2474 4094 4.475345 ACGGGATATCTTAGAGCAACTCT 58.525 43.478 2.05 2.23 43.83 3.24
2475 4095 5.632118 ACGGGATATCTTAGAGCAACTCTA 58.368 41.667 2.05 0.16 41.50 2.43
2476 4096 5.708230 ACGGGATATCTTAGAGCAACTCTAG 59.292 44.000 2.05 1.08 42.92 2.43
2477 4097 5.392595 CGGGATATCTTAGAGCAACTCTAGC 60.393 48.000 2.05 0.00 42.92 3.42
2478 4098 5.478679 GGGATATCTTAGAGCAACTCTAGCA 59.521 44.000 2.05 0.00 42.92 3.49
2479 4099 6.350110 GGGATATCTTAGAGCAACTCTAGCAG 60.350 46.154 2.05 1.69 42.92 4.24
2480 4100 6.432783 GGATATCTTAGAGCAACTCTAGCAGA 59.567 42.308 2.05 7.95 42.92 4.26
2481 4101 4.974368 TCTTAGAGCAACTCTAGCAGAC 57.026 45.455 4.64 0.00 42.92 3.51
2482 4102 3.697045 TCTTAGAGCAACTCTAGCAGACC 59.303 47.826 4.64 0.00 42.92 3.85
2483 4103 1.190643 AGAGCAACTCTAGCAGACCC 58.809 55.000 0.00 0.00 39.28 4.46
2484 4104 0.179124 GAGCAACTCTAGCAGACCCG 60.179 60.000 0.00 0.00 0.00 5.28
2485 4105 1.811679 GCAACTCTAGCAGACCCGC 60.812 63.158 0.00 0.00 0.00 6.13
2486 4106 1.591703 CAACTCTAGCAGACCCGCA 59.408 57.895 0.00 0.00 0.00 5.69
2487 4107 0.176680 CAACTCTAGCAGACCCGCAT 59.823 55.000 0.00 0.00 0.00 4.73
2488 4108 0.905357 AACTCTAGCAGACCCGCATT 59.095 50.000 0.00 0.00 0.00 3.56
2489 4109 0.461961 ACTCTAGCAGACCCGCATTC 59.538 55.000 0.00 0.00 0.00 2.67
2490 4110 0.249657 CTCTAGCAGACCCGCATTCC 60.250 60.000 0.00 0.00 0.00 3.01
2491 4111 1.592669 CTAGCAGACCCGCATTCCG 60.593 63.158 0.00 0.00 0.00 4.30
2492 4112 2.298158 CTAGCAGACCCGCATTCCGT 62.298 60.000 0.00 0.00 34.38 4.69
2493 4113 2.292794 TAGCAGACCCGCATTCCGTC 62.293 60.000 0.00 0.00 34.38 4.79
2494 4114 2.885644 CAGACCCGCATTCCGTCG 60.886 66.667 0.00 0.00 34.38 5.12
2495 4115 4.814294 AGACCCGCATTCCGTCGC 62.814 66.667 0.00 0.00 34.38 5.19
2500 4120 4.437959 CGCATTCCGTCGCGCAAA 62.438 61.111 8.75 0.00 45.57 3.68
2501 4121 2.127042 GCATTCCGTCGCGCAAAA 60.127 55.556 8.75 0.00 0.00 2.44
2502 4122 2.425394 GCATTCCGTCGCGCAAAAC 61.425 57.895 8.75 0.71 0.00 2.43
2503 4123 1.795962 CATTCCGTCGCGCAAAACC 60.796 57.895 8.75 0.00 0.00 3.27
2504 4124 2.255172 ATTCCGTCGCGCAAAACCA 61.255 52.632 8.75 0.00 0.00 3.67
2505 4125 2.452366 ATTCCGTCGCGCAAAACCAC 62.452 55.000 8.75 0.00 0.00 4.16
2506 4126 3.645975 CCGTCGCGCAAAACCACT 61.646 61.111 8.75 0.00 0.00 4.00
2507 4127 2.326550 CGTCGCGCAAAACCACTT 59.673 55.556 8.75 0.00 0.00 3.16
2508 4128 1.298041 CGTCGCGCAAAACCACTTT 60.298 52.632 8.75 0.00 0.00 2.66
2509 4129 0.863957 CGTCGCGCAAAACCACTTTT 60.864 50.000 8.75 0.00 0.00 2.27
2510 4130 0.570272 GTCGCGCAAAACCACTTTTG 59.430 50.000 8.75 2.20 46.30 2.44
2515 4135 2.306383 CAAAACCACTTTTGCGGGC 58.694 52.632 0.00 0.00 39.82 6.13
2516 4136 0.179086 CAAAACCACTTTTGCGGGCT 60.179 50.000 0.00 0.00 39.82 5.19
2517 4137 0.179086 AAAACCACTTTTGCGGGCTG 60.179 50.000 0.00 0.00 0.00 4.85
2518 4138 2.026945 AAACCACTTTTGCGGGCTGG 62.027 55.000 0.00 0.00 0.00 4.85
2519 4139 4.362476 CCACTTTTGCGGGCTGGC 62.362 66.667 0.00 0.00 0.00 4.85
2520 4140 4.705519 CACTTTTGCGGGCTGGCG 62.706 66.667 0.00 0.00 35.06 5.69
2532 4152 4.659172 CTGGCGCAGACCCCCAAA 62.659 66.667 10.83 0.00 32.44 3.28
2533 4153 4.966787 TGGCGCAGACCCCCAAAC 62.967 66.667 10.83 0.00 25.51 2.93
2536 4156 4.323477 CGCAGACCCCCAAACGGA 62.323 66.667 0.00 0.00 0.00 4.69
2537 4157 2.355115 GCAGACCCCCAAACGGAT 59.645 61.111 0.00 0.00 0.00 4.18
2538 4158 1.749258 GCAGACCCCCAAACGGATC 60.749 63.158 0.00 0.00 0.00 3.36
2539 4159 1.449601 CAGACCCCCAAACGGATCG 60.450 63.158 0.00 0.00 0.00 3.69
2540 4160 2.124860 GACCCCCAAACGGATCGG 60.125 66.667 0.00 0.00 0.00 4.18
2541 4161 2.931649 ACCCCCAAACGGATCGGT 60.932 61.111 0.00 0.00 0.00 4.69
2542 4162 1.613035 ACCCCCAAACGGATCGGTA 60.613 57.895 6.32 0.00 0.00 4.02
2543 4163 1.200092 ACCCCCAAACGGATCGGTAA 61.200 55.000 6.32 0.00 0.00 2.85
2544 4164 0.035247 CCCCCAAACGGATCGGTAAA 60.035 55.000 6.32 0.00 0.00 2.01
2545 4165 1.613785 CCCCCAAACGGATCGGTAAAA 60.614 52.381 6.32 0.00 0.00 1.52
2546 4166 2.161030 CCCCAAACGGATCGGTAAAAA 58.839 47.619 6.32 0.00 0.00 1.94
2588 4208 2.871096 TTTTATGGGTCGGCTTCTGT 57.129 45.000 0.00 0.00 0.00 3.41
2589 4209 2.107950 TTTATGGGTCGGCTTCTGTG 57.892 50.000 0.00 0.00 0.00 3.66
2590 4210 0.251916 TTATGGGTCGGCTTCTGTGG 59.748 55.000 0.00 0.00 0.00 4.17
2591 4211 1.622607 TATGGGTCGGCTTCTGTGGG 61.623 60.000 0.00 0.00 0.00 4.61
2592 4212 3.637273 GGGTCGGCTTCTGTGGGT 61.637 66.667 0.00 0.00 0.00 4.51
2593 4213 2.430367 GGTCGGCTTCTGTGGGTT 59.570 61.111 0.00 0.00 0.00 4.11
2594 4214 1.671379 GGTCGGCTTCTGTGGGTTC 60.671 63.158 0.00 0.00 0.00 3.62
2595 4215 1.371558 GTCGGCTTCTGTGGGTTCT 59.628 57.895 0.00 0.00 0.00 3.01
2596 4216 0.951040 GTCGGCTTCTGTGGGTTCTG 60.951 60.000 0.00 0.00 0.00 3.02
2597 4217 2.328099 CGGCTTCTGTGGGTTCTGC 61.328 63.158 0.00 0.00 0.00 4.26
2598 4218 1.073897 GGCTTCTGTGGGTTCTGCT 59.926 57.895 0.00 0.00 0.00 4.24
2599 4219 0.957888 GGCTTCTGTGGGTTCTGCTC 60.958 60.000 0.00 0.00 0.00 4.26
2600 4220 1.294659 GCTTCTGTGGGTTCTGCTCG 61.295 60.000 0.00 0.00 0.00 5.03
2601 4221 0.671781 CTTCTGTGGGTTCTGCTCGG 60.672 60.000 0.00 0.00 0.00 4.63
2602 4222 2.046892 CTGTGGGTTCTGCTCGGG 60.047 66.667 0.00 0.00 0.00 5.14
2603 4223 4.329545 TGTGGGTTCTGCTCGGGC 62.330 66.667 0.00 0.00 39.26 6.13
2605 4225 4.329545 TGGGTTCTGCTCGGGCAC 62.330 66.667 5.44 0.00 44.28 5.01
2623 4243 4.403137 CACCGCGACGACCCGTAA 62.403 66.667 8.23 0.00 41.37 3.18
2624 4244 3.669344 ACCGCGACGACCCGTAAA 61.669 61.111 8.23 0.00 41.37 2.01
2625 4245 3.174573 CCGCGACGACCCGTAAAC 61.175 66.667 8.23 0.00 41.37 2.01
2626 4246 2.428902 CGCGACGACCCGTAAACA 60.429 61.111 0.00 0.00 41.37 2.83
2627 4247 1.802715 CGCGACGACCCGTAAACAT 60.803 57.895 0.00 0.00 41.37 2.71
2628 4248 0.523125 CGCGACGACCCGTAAACATA 60.523 55.000 0.00 0.00 41.37 2.29
2629 4249 1.627879 GCGACGACCCGTAAACATAA 58.372 50.000 0.00 0.00 41.37 1.90
2630 4250 1.991965 GCGACGACCCGTAAACATAAA 59.008 47.619 0.00 0.00 41.37 1.40
2631 4251 2.411409 GCGACGACCCGTAAACATAAAA 59.589 45.455 0.00 0.00 41.37 1.52
2632 4252 3.120718 GCGACGACCCGTAAACATAAAAA 60.121 43.478 0.00 0.00 41.37 1.94
2633 4253 4.385379 CGACGACCCGTAAACATAAAAAC 58.615 43.478 0.00 0.00 41.37 2.43
2634 4254 4.150451 CGACGACCCGTAAACATAAAAACT 59.850 41.667 0.00 0.00 41.37 2.66
2635 4255 5.347012 ACGACCCGTAAACATAAAAACTG 57.653 39.130 0.00 0.00 38.73 3.16
2636 4256 4.153256 CGACCCGTAAACATAAAAACTGC 58.847 43.478 0.00 0.00 0.00 4.40
2637 4257 4.319622 CGACCCGTAAACATAAAAACTGCA 60.320 41.667 0.00 0.00 0.00 4.41
2638 4258 5.517322 ACCCGTAAACATAAAAACTGCAA 57.483 34.783 0.00 0.00 0.00 4.08
2639 4259 5.903810 ACCCGTAAACATAAAAACTGCAAA 58.096 33.333 0.00 0.00 0.00 3.68
2640 4260 6.517605 ACCCGTAAACATAAAAACTGCAAAT 58.482 32.000 0.00 0.00 0.00 2.32
2641 4261 6.643360 ACCCGTAAACATAAAAACTGCAAATC 59.357 34.615 0.00 0.00 0.00 2.17
2642 4262 6.866248 CCCGTAAACATAAAAACTGCAAATCT 59.134 34.615 0.00 0.00 0.00 2.40
2643 4263 7.383843 CCCGTAAACATAAAAACTGCAAATCTT 59.616 33.333 0.00 0.00 0.00 2.40
2644 4264 8.213812 CCGTAAACATAAAAACTGCAAATCTTG 58.786 33.333 0.00 0.00 0.00 3.02
2659 4279 5.969423 CAAATCTTGCATTTGACATAGGGT 58.031 37.500 5.50 0.00 40.42 4.34
2660 4280 6.400568 CAAATCTTGCATTTGACATAGGGTT 58.599 36.000 5.50 0.00 40.42 4.11
2661 4281 6.610075 AATCTTGCATTTGACATAGGGTTT 57.390 33.333 0.00 0.00 0.00 3.27
2662 4282 5.389859 TCTTGCATTTGACATAGGGTTTG 57.610 39.130 0.00 0.00 0.00 2.93
2663 4283 4.220382 TCTTGCATTTGACATAGGGTTTGG 59.780 41.667 0.00 0.00 0.00 3.28
2664 4284 2.233431 TGCATTTGACATAGGGTTTGGC 59.767 45.455 0.00 0.00 0.00 4.52
2665 4285 2.233431 GCATTTGACATAGGGTTTGGCA 59.767 45.455 0.00 0.00 0.00 4.92
2666 4286 3.306641 GCATTTGACATAGGGTTTGGCAA 60.307 43.478 0.00 0.00 40.29 4.52
2668 4288 4.329462 TTTGACATAGGGTTTGGCAAAC 57.671 40.909 30.15 30.15 44.91 2.93
2669 4289 2.950781 TGACATAGGGTTTGGCAAACA 58.049 42.857 35.87 21.36 43.15 2.83
2670 4290 3.300388 TGACATAGGGTTTGGCAAACAA 58.700 40.909 35.87 24.02 43.15 2.83
2671 4291 3.320541 TGACATAGGGTTTGGCAAACAAG 59.679 43.478 35.87 23.94 43.15 3.16
2672 4292 3.304829 ACATAGGGTTTGGCAAACAAGT 58.695 40.909 35.87 24.46 43.15 3.16
2673 4293 3.709141 ACATAGGGTTTGGCAAACAAGTT 59.291 39.130 35.87 22.63 43.15 2.66
2674 4294 2.979814 AGGGTTTGGCAAACAAGTTC 57.020 45.000 35.87 21.92 43.15 3.01
2675 4295 2.183679 AGGGTTTGGCAAACAAGTTCA 58.816 42.857 35.87 2.60 43.15 3.18
2676 4296 2.569404 AGGGTTTGGCAAACAAGTTCAA 59.431 40.909 35.87 1.84 43.15 2.69
2677 4297 3.008485 AGGGTTTGGCAAACAAGTTCAAA 59.992 39.130 35.87 1.08 43.15 2.69
2678 4298 3.944650 GGGTTTGGCAAACAAGTTCAAAT 59.055 39.130 35.87 0.00 43.15 2.32
2679 4299 4.397730 GGGTTTGGCAAACAAGTTCAAATT 59.602 37.500 35.87 0.00 43.15 1.82
2680 4300 5.448496 GGGTTTGGCAAACAAGTTCAAATTC 60.448 40.000 35.87 18.44 43.15 2.17
2681 4301 5.123027 GGTTTGGCAAACAAGTTCAAATTCA 59.877 36.000 35.87 0.00 43.15 2.57
2682 4302 6.348868 GGTTTGGCAAACAAGTTCAAATTCAA 60.349 34.615 35.87 0.00 43.15 2.69
2683 4303 6.808008 TTGGCAAACAAGTTCAAATTCAAA 57.192 29.167 0.00 0.00 33.18 2.69
2684 4304 6.175712 TGGCAAACAAGTTCAAATTCAAAC 57.824 33.333 0.00 0.00 0.00 2.93
2685 4305 5.702670 TGGCAAACAAGTTCAAATTCAAACA 59.297 32.000 5.89 0.00 0.00 2.83
2686 4306 6.205464 TGGCAAACAAGTTCAAATTCAAACAA 59.795 30.769 5.89 0.00 0.00 2.83
2687 4307 6.522855 GGCAAACAAGTTCAAATTCAAACAAC 59.477 34.615 5.89 0.00 0.00 3.32
2688 4308 7.074502 GCAAACAAGTTCAAATTCAAACAACA 58.925 30.769 5.89 0.00 0.00 3.33
2689 4309 7.750014 GCAAACAAGTTCAAATTCAAACAACAT 59.250 29.630 5.89 0.00 0.00 2.71
2696 4316 9.651913 AGTTCAAATTCAAACAACATAAACAGT 57.348 25.926 5.89 0.00 0.00 3.55
2700 4320 8.997960 CAAATTCAAACAACATAAACAGTTTGC 58.002 29.630 8.93 0.00 33.42 3.68
2701 4321 5.940603 TCAAACAACATAAACAGTTTGCG 57.059 34.783 8.93 2.16 33.42 4.85
2702 4322 4.266502 TCAAACAACATAAACAGTTTGCGC 59.733 37.500 8.93 0.00 33.42 6.09
2703 4323 2.380660 ACAACATAAACAGTTTGCGCG 58.619 42.857 8.93 0.00 0.00 6.86
2704 4324 1.122323 CAACATAAACAGTTTGCGCGC 59.878 47.619 27.26 27.26 0.00 6.86
2705 4325 0.309302 ACATAAACAGTTTGCGCGCA 59.691 45.000 33.09 33.09 0.00 6.09
2706 4326 1.268794 ACATAAACAGTTTGCGCGCAA 60.269 42.857 40.23 40.23 0.00 4.85
2707 4327 1.783711 CATAAACAGTTTGCGCGCAAA 59.216 42.857 45.17 45.17 42.77 3.68
2715 4335 2.545148 TTTGCGCGCAAATTAAAACG 57.455 40.000 45.17 0.00 40.51 3.60
2716 4336 1.755161 TTGCGCGCAAATTAAAACGA 58.245 40.000 41.45 17.63 32.44 3.85
2717 4337 1.755161 TGCGCGCAAATTAAAACGAA 58.245 40.000 34.66 2.25 0.00 3.85
2718 4338 1.711298 TGCGCGCAAATTAAAACGAAG 59.289 42.857 34.66 0.00 0.00 3.79
2719 4339 4.332828 TTGCGCGCAAATTAAAACGAAGT 61.333 39.130 41.45 0.00 35.72 3.01
2720 4340 5.772346 TTGCGCGCAAATTAAAACGAAGTT 61.772 37.500 41.45 0.00 42.76 2.66
2721 4341 7.487116 TTGCGCGCAAATTAAAACGAAGTTC 62.487 40.000 41.45 1.70 41.00 3.01
2735 4355 5.018695 ACGAAGTTCATTACGCAAAAGAG 57.981 39.130 3.32 0.00 37.78 2.85
2736 4356 4.084013 ACGAAGTTCATTACGCAAAAGAGG 60.084 41.667 3.32 0.00 37.78 3.69
2737 4357 4.151689 CGAAGTTCATTACGCAAAAGAGGA 59.848 41.667 3.32 0.00 0.00 3.71
2738 4358 5.358298 AAGTTCATTACGCAAAAGAGGAC 57.642 39.130 0.00 0.00 0.00 3.85
2739 4359 4.385825 AGTTCATTACGCAAAAGAGGACA 58.614 39.130 0.00 0.00 0.00 4.02
2740 4360 5.003804 AGTTCATTACGCAAAAGAGGACAT 58.996 37.500 0.00 0.00 0.00 3.06
2741 4361 4.944962 TCATTACGCAAAAGAGGACATG 57.055 40.909 0.00 0.00 0.00 3.21
2742 4362 3.126858 TCATTACGCAAAAGAGGACATGC 59.873 43.478 0.00 0.00 35.49 4.06
2743 4363 2.177394 TACGCAAAAGAGGACATGCA 57.823 45.000 0.00 0.00 38.69 3.96
2744 4364 0.877071 ACGCAAAAGAGGACATGCAG 59.123 50.000 0.00 0.00 38.69 4.41
2745 4365 1.159285 CGCAAAAGAGGACATGCAGA 58.841 50.000 0.00 0.00 38.69 4.26
2746 4366 1.129998 CGCAAAAGAGGACATGCAGAG 59.870 52.381 0.00 0.00 38.69 3.35
2747 4367 1.471684 GCAAAAGAGGACATGCAGAGG 59.528 52.381 0.00 0.00 38.63 3.69
2748 4368 2.787994 CAAAAGAGGACATGCAGAGGT 58.212 47.619 0.00 0.00 0.00 3.85
2749 4369 3.152341 CAAAAGAGGACATGCAGAGGTT 58.848 45.455 0.00 0.00 0.00 3.50
2750 4370 3.515602 AAAGAGGACATGCAGAGGTTT 57.484 42.857 0.00 0.00 0.00 3.27
2751 4371 2.486472 AGAGGACATGCAGAGGTTTG 57.514 50.000 0.00 0.00 0.00 2.93
2752 4372 0.807496 GAGGACATGCAGAGGTTTGC 59.193 55.000 0.00 0.00 44.33 3.68
2758 4378 2.964978 GCAGAGGTTTGCGCCAAT 59.035 55.556 4.18 0.00 33.90 3.16
2759 4379 1.444895 GCAGAGGTTTGCGCCAATG 60.445 57.895 4.18 0.00 33.90 2.82
2760 4380 1.959085 CAGAGGTTTGCGCCAATGT 59.041 52.632 4.18 0.00 0.00 2.71
2761 4381 0.314935 CAGAGGTTTGCGCCAATGTT 59.685 50.000 4.18 0.00 0.00 2.71
2762 4382 0.598065 AGAGGTTTGCGCCAATGTTC 59.402 50.000 4.18 0.00 0.00 3.18
2763 4383 0.729140 GAGGTTTGCGCCAATGTTCG 60.729 55.000 4.18 0.00 0.00 3.95
2764 4384 1.732683 GGTTTGCGCCAATGTTCGG 60.733 57.895 4.18 0.00 0.00 4.30
2765 4385 2.049618 TTTGCGCCAATGTTCGGC 60.050 55.556 4.18 0.00 46.62 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 5.878406 ATAACTGCTAGCTCAACTGGTAT 57.122 39.130 17.23 4.99 0.00 2.73
37 38 6.817184 AGCTTGGCGTTTCTATAGAATAAGA 58.183 36.000 15.82 0.00 33.54 2.10
40 41 8.951787 TTTAAGCTTGGCGTTTCTATAGAATA 57.048 30.769 15.82 4.89 33.54 1.75
50 51 2.691011 TGGTTCTTTAAGCTTGGCGTTT 59.309 40.909 9.86 0.00 34.13 3.60
52 53 1.975660 TGGTTCTTTAAGCTTGGCGT 58.024 45.000 9.86 0.00 34.13 5.68
129 134 4.610605 TTGTTTCACAGATCCCTTCGTA 57.389 40.909 0.00 0.00 0.00 3.43
366 378 3.726730 TCGCAAATTTAAAAGACGTGCAC 59.273 39.130 6.82 6.82 0.00 4.57
399 411 7.934665 GGGTAGTTTAAAACATGTTCCCATTTT 59.065 33.333 18.24 8.89 0.00 1.82
403 415 4.519730 CGGGTAGTTTAAAACATGTTCCCA 59.480 41.667 21.25 5.79 0.00 4.37
417 429 5.855740 TCCAAAAATTGTTCGGGTAGTTT 57.144 34.783 0.00 0.00 0.00 2.66
422 434 4.202172 ACGAATTCCAAAAATTGTTCGGGT 60.202 37.500 14.56 0.00 39.49 5.28
457 470 7.012894 TCAGGAGTTTCGAAAATTTTCAGCTTA 59.987 33.333 26.20 7.64 37.01 3.09
460 473 5.519722 TCAGGAGTTTCGAAAATTTTCAGC 58.480 37.500 26.20 12.72 37.01 4.26
544 559 6.502652 TCAGAAAATGTTCTCGCATCAAAAA 58.497 32.000 0.00 0.00 42.45 1.94
551 566 6.206634 ACCTAAATTCAGAAAATGTTCTCGCA 59.793 34.615 0.00 0.00 42.45 5.10
552 567 6.612306 ACCTAAATTCAGAAAATGTTCTCGC 58.388 36.000 0.00 0.00 42.45 5.03
555 571 8.477419 TTGGACCTAAATTCAGAAAATGTTCT 57.523 30.769 0.00 0.00 45.36 3.01
556 572 9.541143 TTTTGGACCTAAATTCAGAAAATGTTC 57.459 29.630 0.00 0.00 0.00 3.18
563 579 9.541143 GTTCAAATTTTGGACCTAAATTCAGAA 57.459 29.630 21.78 22.39 34.91 3.02
564 580 8.923270 AGTTCAAATTTTGGACCTAAATTCAGA 58.077 29.630 21.78 19.25 40.14 3.27
565 581 9.196552 GAGTTCAAATTTTGGACCTAAATTCAG 57.803 33.333 21.78 17.81 40.14 3.02
566 582 8.700051 TGAGTTCAAATTTTGGACCTAAATTCA 58.300 29.630 21.78 14.04 40.14 2.57
567 583 8.978539 GTGAGTTCAAATTTTGGACCTAAATTC 58.021 33.333 21.78 12.40 40.14 2.17
568 584 7.651704 CGTGAGTTCAAATTTTGGACCTAAATT 59.348 33.333 17.61 17.61 40.14 1.82
569 585 7.013846 TCGTGAGTTCAAATTTTGGACCTAAAT 59.986 33.333 15.50 7.95 40.14 1.40
570 586 6.319152 TCGTGAGTTCAAATTTTGGACCTAAA 59.681 34.615 15.50 3.51 40.14 1.85
571 587 5.823570 TCGTGAGTTCAAATTTTGGACCTAA 59.176 36.000 15.50 1.08 40.14 2.69
572 588 5.369833 TCGTGAGTTCAAATTTTGGACCTA 58.630 37.500 15.50 4.06 40.14 3.08
573 589 4.204012 TCGTGAGTTCAAATTTTGGACCT 58.796 39.130 15.50 6.43 40.14 3.85
574 590 4.561735 TCGTGAGTTCAAATTTTGGACC 57.438 40.909 15.50 8.86 40.14 4.46
575 591 5.336744 TGTTCGTGAGTTCAAATTTTGGAC 58.663 37.500 11.92 11.92 39.55 4.02
576 592 5.568685 TGTTCGTGAGTTCAAATTTTGGA 57.431 34.783 9.18 0.00 0.00 3.53
577 593 6.826893 ATTGTTCGTGAGTTCAAATTTTGG 57.173 33.333 9.18 0.00 0.00 3.28
578 594 9.540431 AAAAATTGTTCGTGAGTTCAAATTTTG 57.460 25.926 11.77 2.59 36.99 2.44
608 624 9.838975 GTTCCAAAATTTCAAAACTGTTCAAAT 57.161 25.926 0.00 0.00 0.00 2.32
609 625 8.840321 TGTTCCAAAATTTCAAAACTGTTCAAA 58.160 25.926 0.00 0.00 0.00 2.69
610 626 8.383318 TGTTCCAAAATTTCAAAACTGTTCAA 57.617 26.923 0.00 0.00 0.00 2.69
611 627 7.969536 TGTTCCAAAATTTCAAAACTGTTCA 57.030 28.000 0.00 0.00 0.00 3.18
612 628 9.838975 AAATGTTCCAAAATTTCAAAACTGTTC 57.161 25.926 0.00 0.00 0.00 3.18
716 732 9.927668 TGTCATTTTTCTGTTTCTTTTCTTCTT 57.072 25.926 0.00 0.00 0.00 2.52
717 733 9.927668 TTGTCATTTTTCTGTTTCTTTTCTTCT 57.072 25.926 0.00 0.00 0.00 2.85
727 743 9.676195 CCTTTTGTTTTTGTCATTTTTCTGTTT 57.324 25.926 0.00 0.00 0.00 2.83
728 744 8.296000 CCCTTTTGTTTTTGTCATTTTTCTGTT 58.704 29.630 0.00 0.00 0.00 3.16
729 745 7.094420 CCCCTTTTGTTTTTGTCATTTTTCTGT 60.094 33.333 0.00 0.00 0.00 3.41
730 746 7.120432 TCCCCTTTTGTTTTTGTCATTTTTCTG 59.880 33.333 0.00 0.00 0.00 3.02
731 747 7.171653 TCCCCTTTTGTTTTTGTCATTTTTCT 58.828 30.769 0.00 0.00 0.00 2.52
732 748 7.384439 TCCCCTTTTGTTTTTGTCATTTTTC 57.616 32.000 0.00 0.00 0.00 2.29
733 749 7.767250 TTCCCCTTTTGTTTTTGTCATTTTT 57.233 28.000 0.00 0.00 0.00 1.94
734 750 7.767250 TTTCCCCTTTTGTTTTTGTCATTTT 57.233 28.000 0.00 0.00 0.00 1.82
735 751 7.574030 CGTTTTCCCCTTTTGTTTTTGTCATTT 60.574 33.333 0.00 0.00 0.00 2.32
736 752 6.128145 CGTTTTCCCCTTTTGTTTTTGTCATT 60.128 34.615 0.00 0.00 0.00 2.57
737 753 5.352846 CGTTTTCCCCTTTTGTTTTTGTCAT 59.647 36.000 0.00 0.00 0.00 3.06
738 754 4.691216 CGTTTTCCCCTTTTGTTTTTGTCA 59.309 37.500 0.00 0.00 0.00 3.58
739 755 4.930405 TCGTTTTCCCCTTTTGTTTTTGTC 59.070 37.500 0.00 0.00 0.00 3.18
740 756 4.895961 TCGTTTTCCCCTTTTGTTTTTGT 58.104 34.783 0.00 0.00 0.00 2.83
741 757 5.864628 TTCGTTTTCCCCTTTTGTTTTTG 57.135 34.783 0.00 0.00 0.00 2.44
742 758 6.262496 TGTTTTCGTTTTCCCCTTTTGTTTTT 59.738 30.769 0.00 0.00 0.00 1.94
743 759 5.763698 TGTTTTCGTTTTCCCCTTTTGTTTT 59.236 32.000 0.00 0.00 0.00 2.43
744 760 5.306394 TGTTTTCGTTTTCCCCTTTTGTTT 58.694 33.333 0.00 0.00 0.00 2.83
745 761 4.895961 TGTTTTCGTTTTCCCCTTTTGTT 58.104 34.783 0.00 0.00 0.00 2.83
746 762 4.538746 TGTTTTCGTTTTCCCCTTTTGT 57.461 36.364 0.00 0.00 0.00 2.83
747 763 5.864628 TTTGTTTTCGTTTTCCCCTTTTG 57.135 34.783 0.00 0.00 0.00 2.44
748 764 5.763698 TGTTTTGTTTTCGTTTTCCCCTTTT 59.236 32.000 0.00 0.00 0.00 2.27
749 765 5.306394 TGTTTTGTTTTCGTTTTCCCCTTT 58.694 33.333 0.00 0.00 0.00 3.11
750 766 4.895961 TGTTTTGTTTTCGTTTTCCCCTT 58.104 34.783 0.00 0.00 0.00 3.95
751 767 4.221041 TCTGTTTTGTTTTCGTTTTCCCCT 59.779 37.500 0.00 0.00 0.00 4.79
752 768 4.496360 TCTGTTTTGTTTTCGTTTTCCCC 58.504 39.130 0.00 0.00 0.00 4.81
753 769 6.469139 TTTCTGTTTTGTTTTCGTTTTCCC 57.531 33.333 0.00 0.00 0.00 3.97
759 775 9.425577 TCCTTTTAATTTCTGTTTTGTTTTCGT 57.574 25.926 0.00 0.00 0.00 3.85
765 781 8.661257 CGGTTTTCCTTTTAATTTCTGTTTTGT 58.339 29.630 0.00 0.00 37.95 2.83
766 782 8.119845 CCGGTTTTCCTTTTAATTTCTGTTTTG 58.880 33.333 0.00 0.00 37.95 2.44
767 783 7.825270 ACCGGTTTTCCTTTTAATTTCTGTTTT 59.175 29.630 0.00 0.00 37.95 2.43
768 784 7.332557 ACCGGTTTTCCTTTTAATTTCTGTTT 58.667 30.769 0.00 0.00 37.95 2.83
769 785 6.880484 ACCGGTTTTCCTTTTAATTTCTGTT 58.120 32.000 0.00 0.00 37.95 3.16
770 786 6.474140 ACCGGTTTTCCTTTTAATTTCTGT 57.526 33.333 0.00 0.00 37.95 3.41
771 787 8.874744 TTTACCGGTTTTCCTTTTAATTTCTG 57.125 30.769 15.04 0.00 37.95 3.02
772 788 9.537192 CTTTTACCGGTTTTCCTTTTAATTTCT 57.463 29.630 15.04 0.00 37.95 2.52
773 789 9.531942 TCTTTTACCGGTTTTCCTTTTAATTTC 57.468 29.630 15.04 0.00 37.95 2.17
774 790 9.887629 TTCTTTTACCGGTTTTCCTTTTAATTT 57.112 25.926 15.04 0.00 37.95 1.82
775 791 9.887629 TTTCTTTTACCGGTTTTCCTTTTAATT 57.112 25.926 15.04 0.00 37.95 1.40
776 792 9.887629 TTTTCTTTTACCGGTTTTCCTTTTAAT 57.112 25.926 15.04 0.00 37.95 1.40
777 793 9.887629 ATTTTCTTTTACCGGTTTTCCTTTTAA 57.112 25.926 15.04 0.00 37.95 1.52
779 795 9.887629 TTATTTTCTTTTACCGGTTTTCCTTTT 57.112 25.926 15.04 0.00 37.95 2.27
780 796 9.887629 TTTATTTTCTTTTACCGGTTTTCCTTT 57.112 25.926 15.04 0.00 37.95 3.11
782 798 9.701098 GATTTATTTTCTTTTACCGGTTTTCCT 57.299 29.630 15.04 0.00 37.95 3.36
783 799 8.641155 CGATTTATTTTCTTTTACCGGTTTTCC 58.359 33.333 15.04 0.00 0.00 3.13
784 800 8.641155 CCGATTTATTTTCTTTTACCGGTTTTC 58.359 33.333 15.04 0.00 0.00 2.29
785 801 8.143193 ACCGATTTATTTTCTTTTACCGGTTTT 58.857 29.630 15.04 0.00 43.03 2.43
786 802 7.660112 ACCGATTTATTTTCTTTTACCGGTTT 58.340 30.769 15.04 0.00 43.03 3.27
787 803 7.218228 ACCGATTTATTTTCTTTTACCGGTT 57.782 32.000 15.04 0.00 43.03 4.44
788 804 6.822667 ACCGATTTATTTTCTTTTACCGGT 57.177 33.333 13.98 13.98 41.16 5.28
789 805 7.306953 TGAACCGATTTATTTTCTTTTACCGG 58.693 34.615 0.00 0.00 39.14 5.28
790 806 7.483691 CCTGAACCGATTTATTTTCTTTTACCG 59.516 37.037 0.00 0.00 0.00 4.02
791 807 7.758076 CCCTGAACCGATTTATTTTCTTTTACC 59.242 37.037 0.00 0.00 0.00 2.85
792 808 8.517056 TCCCTGAACCGATTTATTTTCTTTTAC 58.483 33.333 0.00 0.00 0.00 2.01
793 809 8.638629 TCCCTGAACCGATTTATTTTCTTTTA 57.361 30.769 0.00 0.00 0.00 1.52
794 810 7.533289 TCCCTGAACCGATTTATTTTCTTTT 57.467 32.000 0.00 0.00 0.00 2.27
795 811 7.375834 GTTCCCTGAACCGATTTATTTTCTTT 58.624 34.615 0.00 0.00 36.65 2.52
796 812 6.920817 GTTCCCTGAACCGATTTATTTTCTT 58.079 36.000 0.00 0.00 36.65 2.52
797 813 6.510879 GTTCCCTGAACCGATTTATTTTCT 57.489 37.500 0.00 0.00 36.65 2.52
851 867 6.459670 ACAATATTATCCGGTTTTGGGAAC 57.540 37.500 0.00 0.00 37.07 3.62
852 868 7.117397 TGTACAATATTATCCGGTTTTGGGAA 58.883 34.615 0.00 0.00 37.07 3.97
853 869 6.660800 TGTACAATATTATCCGGTTTTGGGA 58.339 36.000 0.00 0.00 38.10 4.37
854 870 6.016610 CCTGTACAATATTATCCGGTTTTGGG 60.017 42.308 0.00 0.00 0.00 4.12
855 871 6.768861 TCCTGTACAATATTATCCGGTTTTGG 59.231 38.462 0.00 0.00 0.00 3.28
856 872 7.795482 TCCTGTACAATATTATCCGGTTTTG 57.205 36.000 0.00 0.00 0.00 2.44
857 873 8.050930 AGTTCCTGTACAATATTATCCGGTTTT 58.949 33.333 0.00 0.00 0.00 2.43
858 874 7.497909 CAGTTCCTGTACAATATTATCCGGTTT 59.502 37.037 0.00 0.00 0.00 3.27
859 875 6.990349 CAGTTCCTGTACAATATTATCCGGTT 59.010 38.462 0.00 0.00 0.00 4.44
860 876 6.463897 CCAGTTCCTGTACAATATTATCCGGT 60.464 42.308 0.00 0.00 0.00 5.28
861 877 5.932303 CCAGTTCCTGTACAATATTATCCGG 59.068 44.000 0.00 0.00 0.00 5.14
862 878 5.932303 CCCAGTTCCTGTACAATATTATCCG 59.068 44.000 0.00 0.00 0.00 4.18
863 879 6.838382 ACCCAGTTCCTGTACAATATTATCC 58.162 40.000 0.00 0.00 0.00 2.59
864 880 7.597743 CGTACCCAGTTCCTGTACAATATTATC 59.402 40.741 0.00 0.00 35.67 1.75
865 881 7.439381 CGTACCCAGTTCCTGTACAATATTAT 58.561 38.462 0.00 0.00 35.67 1.28
866 882 6.683610 GCGTACCCAGTTCCTGTACAATATTA 60.684 42.308 0.00 0.00 35.67 0.98
867 883 5.667466 CGTACCCAGTTCCTGTACAATATT 58.333 41.667 0.00 0.00 35.67 1.28
868 884 4.442472 GCGTACCCAGTTCCTGTACAATAT 60.442 45.833 0.00 0.00 35.67 1.28
869 885 3.119029 GCGTACCCAGTTCCTGTACAATA 60.119 47.826 0.00 0.00 35.67 1.90
870 886 2.354403 GCGTACCCAGTTCCTGTACAAT 60.354 50.000 0.00 0.00 35.67 2.71
871 887 1.001181 GCGTACCCAGTTCCTGTACAA 59.999 52.381 0.00 0.00 35.67 2.41
872 888 0.604578 GCGTACCCAGTTCCTGTACA 59.395 55.000 0.00 0.00 35.67 2.90
873 889 0.604578 TGCGTACCCAGTTCCTGTAC 59.395 55.000 0.00 0.00 33.24 2.90
874 890 1.340088 TTGCGTACCCAGTTCCTGTA 58.660 50.000 0.00 0.00 0.00 2.74
875 891 0.470766 TTTGCGTACCCAGTTCCTGT 59.529 50.000 0.00 0.00 0.00 4.00
876 892 1.821216 ATTTGCGTACCCAGTTCCTG 58.179 50.000 0.00 0.00 0.00 3.86
877 893 2.159382 CAATTTGCGTACCCAGTTCCT 58.841 47.619 0.00 0.00 0.00 3.36
878 894 1.201414 CCAATTTGCGTACCCAGTTCC 59.799 52.381 0.00 0.00 0.00 3.62
879 895 2.095415 GTCCAATTTGCGTACCCAGTTC 60.095 50.000 0.00 0.00 0.00 3.01
880 896 1.883926 GTCCAATTTGCGTACCCAGTT 59.116 47.619 0.00 0.00 0.00 3.16
881 897 1.073284 AGTCCAATTTGCGTACCCAGT 59.927 47.619 0.00 0.00 0.00 4.00
882 898 1.468520 CAGTCCAATTTGCGTACCCAG 59.531 52.381 0.00 0.00 0.00 4.45
883 899 1.529226 CAGTCCAATTTGCGTACCCA 58.471 50.000 0.00 0.00 0.00 4.51
884 900 0.808755 CCAGTCCAATTTGCGTACCC 59.191 55.000 0.00 0.00 0.00 3.69
885 901 0.170339 GCCAGTCCAATTTGCGTACC 59.830 55.000 0.00 0.00 0.00 3.34
886 902 0.170339 GGCCAGTCCAATTTGCGTAC 59.830 55.000 0.00 0.00 34.01 3.67
887 903 0.963355 GGGCCAGTCCAATTTGCGTA 60.963 55.000 4.39 0.00 36.21 4.42
888 904 2.275380 GGGCCAGTCCAATTTGCGT 61.275 57.895 4.39 0.00 36.21 5.24
889 905 1.606885 ATGGGCCAGTCCAATTTGCG 61.607 55.000 13.78 0.00 40.62 4.85
890 906 0.176449 GATGGGCCAGTCCAATTTGC 59.824 55.000 13.78 0.00 40.62 3.68
891 907 1.205417 GTGATGGGCCAGTCCAATTTG 59.795 52.381 13.78 0.00 40.62 2.32
892 908 1.560505 GTGATGGGCCAGTCCAATTT 58.439 50.000 13.78 0.00 40.62 1.82
893 909 0.680921 CGTGATGGGCCAGTCCAATT 60.681 55.000 13.78 0.00 40.62 2.32
894 910 1.077501 CGTGATGGGCCAGTCCAAT 60.078 57.895 13.78 0.00 40.62 3.16
895 911 2.063015 AACGTGATGGGCCAGTCCAA 62.063 55.000 13.78 0.00 40.62 3.53
896 912 2.525124 AACGTGATGGGCCAGTCCA 61.525 57.895 13.78 7.19 41.60 4.02
897 913 2.040544 CAACGTGATGGGCCAGTCC 61.041 63.158 13.78 4.27 0.00 3.85
898 914 2.690778 GCAACGTGATGGGCCAGTC 61.691 63.158 13.78 10.52 0.00 3.51
899 915 2.672996 GCAACGTGATGGGCCAGT 60.673 61.111 13.78 0.28 0.00 4.00
900 916 2.360350 AGCAACGTGATGGGCCAG 60.360 61.111 13.78 0.00 0.00 4.85
901 917 2.359850 GAGCAACGTGATGGGCCA 60.360 61.111 9.61 9.61 0.00 5.36
902 918 3.499737 CGAGCAACGTGATGGGCC 61.500 66.667 0.00 0.00 37.22 5.80
903 919 3.499737 CCGAGCAACGTGATGGGC 61.500 66.667 0.00 0.00 40.78 5.36
904 920 2.047274 ACCGAGCAACGTGATGGG 60.047 61.111 0.00 0.00 37.67 4.00
905 921 2.444624 CGACCGAGCAACGTGATGG 61.445 63.158 0.00 0.00 40.78 3.51
906 922 3.071459 GCGACCGAGCAACGTGATG 62.071 63.158 0.00 0.00 40.78 3.07
907 923 2.765250 AAGCGACCGAGCAACGTGAT 62.765 55.000 0.00 0.00 40.78 3.06
908 924 3.493830 AAGCGACCGAGCAACGTGA 62.494 57.895 0.00 0.00 40.78 4.35
909 925 3.000080 GAAGCGACCGAGCAACGTG 62.000 63.158 0.00 0.00 40.78 4.49
910 926 2.733593 GAAGCGACCGAGCAACGT 60.734 61.111 0.00 0.00 40.78 3.99
911 927 2.430921 AGAAGCGACCGAGCAACG 60.431 61.111 0.00 0.00 40.15 4.10
912 928 2.095252 GGAGAAGCGACCGAGCAAC 61.095 63.158 0.00 0.00 40.15 4.17
913 929 2.261671 GGAGAAGCGACCGAGCAA 59.738 61.111 0.00 0.00 40.15 3.91
914 930 2.676822 AGGAGAAGCGACCGAGCA 60.677 61.111 0.00 0.00 40.15 4.26
915 931 2.202676 CAGGAGAAGCGACCGAGC 60.203 66.667 0.00 0.00 37.41 5.03
916 932 1.153939 CACAGGAGAAGCGACCGAG 60.154 63.158 0.00 0.00 0.00 4.63
917 933 2.962569 CACAGGAGAAGCGACCGA 59.037 61.111 0.00 0.00 0.00 4.69
918 934 2.811317 GCACAGGAGAAGCGACCG 60.811 66.667 0.00 0.00 0.00 4.79
923 939 0.037790 AGTCTTCGCACAGGAGAAGC 60.038 55.000 3.71 0.62 46.63 3.86
925 941 0.319900 GCAGTCTTCGCACAGGAGAA 60.320 55.000 0.00 0.00 0.00 2.87
926 942 1.181741 AGCAGTCTTCGCACAGGAGA 61.182 55.000 0.00 0.00 0.00 3.71
927 943 1.013005 CAGCAGTCTTCGCACAGGAG 61.013 60.000 0.00 0.00 0.00 3.69
928 944 1.005748 CAGCAGTCTTCGCACAGGA 60.006 57.895 0.00 0.00 0.00 3.86
929 945 2.675056 GCAGCAGTCTTCGCACAGG 61.675 63.158 0.00 0.00 0.00 4.00
930 946 2.675056 GGCAGCAGTCTTCGCACAG 61.675 63.158 0.00 0.00 0.00 3.66
931 947 2.666190 GGCAGCAGTCTTCGCACA 60.666 61.111 0.00 0.00 0.00 4.57
932 948 2.358003 AGGCAGCAGTCTTCGCAC 60.358 61.111 0.00 0.00 0.00 5.34
933 949 2.357881 CAGGCAGCAGTCTTCGCA 60.358 61.111 0.00 0.00 0.00 5.10
934 950 3.797546 GCAGGCAGCAGTCTTCGC 61.798 66.667 0.00 0.00 44.79 4.70
943 959 0.606401 TTGGTTAGTCAGCAGGCAGC 60.606 55.000 0.00 0.00 46.19 5.25
944 960 1.160137 GTTGGTTAGTCAGCAGGCAG 58.840 55.000 0.00 0.00 33.34 4.85
945 961 0.250727 GGTTGGTTAGTCAGCAGGCA 60.251 55.000 0.00 0.00 33.34 4.75
946 962 0.250727 TGGTTGGTTAGTCAGCAGGC 60.251 55.000 0.00 0.00 33.34 4.85
947 963 2.496899 ATGGTTGGTTAGTCAGCAGG 57.503 50.000 0.00 0.00 33.34 4.85
948 964 2.416547 CGAATGGTTGGTTAGTCAGCAG 59.583 50.000 0.00 0.00 33.34 4.24
949 965 2.037902 TCGAATGGTTGGTTAGTCAGCA 59.962 45.455 0.00 0.00 0.00 4.41
950 966 2.673368 CTCGAATGGTTGGTTAGTCAGC 59.327 50.000 0.00 0.00 0.00 4.26
951 967 2.673368 GCTCGAATGGTTGGTTAGTCAG 59.327 50.000 0.00 0.00 0.00 3.51
952 968 2.614481 GGCTCGAATGGTTGGTTAGTCA 60.614 50.000 0.00 0.00 0.00 3.41
953 969 2.007608 GGCTCGAATGGTTGGTTAGTC 58.992 52.381 0.00 0.00 0.00 2.59
954 970 1.628846 AGGCTCGAATGGTTGGTTAGT 59.371 47.619 0.00 0.00 0.00 2.24
955 971 2.280628 GAGGCTCGAATGGTTGGTTAG 58.719 52.381 0.00 0.00 0.00 2.34
956 972 1.065709 GGAGGCTCGAATGGTTGGTTA 60.066 52.381 8.69 0.00 0.00 2.85
957 973 0.322546 GGAGGCTCGAATGGTTGGTT 60.323 55.000 8.69 0.00 0.00 3.67
958 974 1.299976 GGAGGCTCGAATGGTTGGT 59.700 57.895 8.69 0.00 0.00 3.67
959 975 1.452108 GGGAGGCTCGAATGGTTGG 60.452 63.158 8.69 0.00 0.00 3.77
960 976 1.815421 CGGGAGGCTCGAATGGTTG 60.815 63.158 8.69 0.00 0.00 3.77
961 977 1.338136 ATCGGGAGGCTCGAATGGTT 61.338 55.000 8.69 0.00 40.15 3.67
962 978 1.762460 ATCGGGAGGCTCGAATGGT 60.762 57.895 8.69 0.00 40.15 3.55
970 986 3.461773 CCGTGACATCGGGAGGCT 61.462 66.667 8.15 0.00 45.88 4.58
978 994 0.539986 TTAAGGAGGCCCGTGACATC 59.460 55.000 0.00 0.00 37.58 3.06
979 995 0.541863 CTTAAGGAGGCCCGTGACAT 59.458 55.000 0.00 0.00 37.58 3.06
1021 1037 1.032657 ATCGGACTGGACAGACGGAG 61.033 60.000 6.29 0.00 36.38 4.63
1022 1038 0.253894 TATCGGACTGGACAGACGGA 59.746 55.000 6.29 10.03 37.03 4.69
1023 1039 1.065701 CTTATCGGACTGGACAGACGG 59.934 57.143 6.29 4.78 34.81 4.79
1024 1040 2.014857 TCTTATCGGACTGGACAGACG 58.985 52.381 6.29 10.05 35.15 4.18
1025 1041 3.181485 CCTTCTTATCGGACTGGACAGAC 60.181 52.174 6.29 0.00 0.00 3.51
1026 1042 3.024547 CCTTCTTATCGGACTGGACAGA 58.975 50.000 6.29 0.00 0.00 3.41
1027 1043 3.024547 TCCTTCTTATCGGACTGGACAG 58.975 50.000 0.00 0.00 0.00 3.51
1028 1044 3.024547 CTCCTTCTTATCGGACTGGACA 58.975 50.000 0.00 0.00 0.00 4.02
1107 1127 1.541588 GCTCGCTCCCTTGTTTTGATT 59.458 47.619 0.00 0.00 0.00 2.57
1184 1204 3.518998 ACCGAGGACCGCGAGATG 61.519 66.667 20.01 4.61 36.84 2.90
1328 2804 1.520342 GTCGACCATCTGCTGCTCC 60.520 63.158 3.51 0.00 0.00 4.70
1453 2933 8.122952 ACTTATGATACTAGCAAAACGAAATGC 58.877 33.333 0.00 0.00 42.87 3.56
1515 3002 6.294176 GCAGTCACAACAAGGTATGATCTTTT 60.294 38.462 0.00 0.00 0.00 2.27
1525 3012 0.839946 AGGAGCAGTCACAACAAGGT 59.160 50.000 0.00 0.00 0.00 3.50
1674 3184 6.293298 GCAATATCAGAGCAACAAGTATGAGG 60.293 42.308 0.00 0.00 0.00 3.86
1830 3345 5.014858 TCAGTACCTCCGTAGAATCAAACT 58.985 41.667 0.00 0.00 0.00 2.66
1867 3385 6.696411 ACTCAGCCAATATAGACTAGAATGC 58.304 40.000 0.00 0.00 0.00 3.56
2158 3687 6.454981 GCTGTTTTTGTGTTGTGTTCCATTAC 60.455 38.462 0.00 0.00 0.00 1.89
2169 3698 3.482110 GCTAAGACGCTGTTTTTGTGTTG 59.518 43.478 0.00 0.00 0.00 3.33
2189 3718 1.028905 TTGTTTACCTGCTTTGCGCT 58.971 45.000 9.73 0.00 40.11 5.92
2237 3856 2.282820 GCAGAAGCTACACGCAAGATAC 59.717 50.000 0.00 0.00 42.61 2.24
2247 3867 2.302733 TGAAGATGGTGCAGAAGCTACA 59.697 45.455 0.00 0.00 42.74 2.74
2345 3965 1.372087 GGCATTCCAGAGAACGGCAG 61.372 60.000 0.00 0.00 40.20 4.85
2360 3980 3.946983 TGGAACAAGGTGCGATGGCAT 62.947 52.381 5.45 0.00 44.96 4.40
2452 4072 4.475345 AGAGTTGCTCTAAGATATCCCGT 58.525 43.478 0.00 0.00 39.28 5.28
2465 4085 0.179124 CGGGTCTGCTAGAGTTGCTC 60.179 60.000 0.00 0.00 0.00 4.26
2466 4086 1.893786 CGGGTCTGCTAGAGTTGCT 59.106 57.895 0.00 0.00 0.00 3.91
2467 4087 1.811679 GCGGGTCTGCTAGAGTTGC 60.812 63.158 0.00 0.00 0.00 4.17
2468 4088 0.176680 ATGCGGGTCTGCTAGAGTTG 59.823 55.000 0.00 0.00 35.36 3.16
2469 4089 0.905357 AATGCGGGTCTGCTAGAGTT 59.095 50.000 0.00 0.00 35.36 3.01
2470 4090 0.461961 GAATGCGGGTCTGCTAGAGT 59.538 55.000 0.00 0.00 35.36 3.24
2471 4091 0.249657 GGAATGCGGGTCTGCTAGAG 60.250 60.000 0.00 0.00 35.36 2.43
2472 4092 1.823295 GGAATGCGGGTCTGCTAGA 59.177 57.895 0.00 0.00 35.36 2.43
2473 4093 1.592669 CGGAATGCGGGTCTGCTAG 60.593 63.158 3.31 0.00 35.36 3.42
2474 4094 2.292794 GACGGAATGCGGGTCTGCTA 62.293 60.000 0.00 0.00 35.36 3.49
2475 4095 3.665675 GACGGAATGCGGGTCTGCT 62.666 63.158 0.00 0.00 35.36 4.24
2476 4096 3.195698 GACGGAATGCGGGTCTGC 61.196 66.667 0.00 0.00 0.00 4.26
2477 4097 2.885644 CGACGGAATGCGGGTCTG 60.886 66.667 0.00 0.00 0.00 3.51
2478 4098 4.814294 GCGACGGAATGCGGGTCT 62.814 66.667 0.00 0.00 0.00 3.85
2484 4104 2.127042 TTTTGCGCGACGGAATGC 60.127 55.556 12.10 0.00 37.01 3.56
2485 4105 1.795962 GGTTTTGCGCGACGGAATG 60.796 57.895 12.10 0.00 37.01 2.67
2486 4106 2.255172 TGGTTTTGCGCGACGGAAT 61.255 52.632 12.10 0.00 37.01 3.01
2487 4107 2.895865 TGGTTTTGCGCGACGGAA 60.896 55.556 12.10 2.49 35.06 4.30
2488 4108 3.641986 GTGGTTTTGCGCGACGGA 61.642 61.111 12.10 0.00 0.00 4.69
2489 4109 2.655952 AAAGTGGTTTTGCGCGACGG 62.656 55.000 12.10 0.00 0.00 4.79
2490 4110 0.863957 AAAAGTGGTTTTGCGCGACG 60.864 50.000 12.10 0.00 34.44 5.12
2491 4111 0.570272 CAAAAGTGGTTTTGCGCGAC 59.430 50.000 12.10 0.88 44.56 5.19
2492 4112 2.950877 CAAAAGTGGTTTTGCGCGA 58.049 47.368 12.10 0.00 44.56 5.87
2498 4118 0.179086 CAGCCCGCAAAAGTGGTTTT 60.179 50.000 0.00 0.00 36.22 2.43
2499 4119 1.441311 CAGCCCGCAAAAGTGGTTT 59.559 52.632 0.00 0.00 0.00 3.27
2500 4120 2.498056 CCAGCCCGCAAAAGTGGTT 61.498 57.895 0.00 0.00 0.00 3.67
2501 4121 2.912025 CCAGCCCGCAAAAGTGGT 60.912 61.111 0.00 0.00 0.00 4.16
2502 4122 4.362476 GCCAGCCCGCAAAAGTGG 62.362 66.667 0.00 0.00 0.00 4.00
2503 4123 4.705519 CGCCAGCCCGCAAAAGTG 62.706 66.667 0.00 0.00 0.00 3.16
2519 4139 3.622060 ATCCGTTTGGGGGTCTGCG 62.622 63.158 0.00 0.00 36.01 5.18
2520 4140 1.749258 GATCCGTTTGGGGGTCTGC 60.749 63.158 0.00 0.00 36.01 4.26
2521 4141 1.449601 CGATCCGTTTGGGGGTCTG 60.450 63.158 0.00 0.00 36.01 3.51
2522 4142 2.666098 CCGATCCGTTTGGGGGTCT 61.666 63.158 0.00 0.00 36.01 3.85
2523 4143 1.616091 TACCGATCCGTTTGGGGGTC 61.616 60.000 0.00 0.00 35.94 4.46
2524 4144 1.200092 TTACCGATCCGTTTGGGGGT 61.200 55.000 0.00 0.00 37.45 4.95
2525 4145 0.035247 TTTACCGATCCGTTTGGGGG 60.035 55.000 0.00 0.00 36.01 5.40
2526 4146 1.823797 TTTTACCGATCCGTTTGGGG 58.176 50.000 0.00 0.00 36.01 4.96
2543 4163 7.435068 AGCATATTCCGCGAATATACTTTTT 57.565 32.000 8.23 0.00 41.52 1.94
2544 4164 7.435068 AAGCATATTCCGCGAATATACTTTT 57.565 32.000 19.77 12.03 41.76 2.27
2545 4165 7.435068 AAAGCATATTCCGCGAATATACTTT 57.565 32.000 24.76 24.76 44.77 2.66
2546 4166 7.435068 AAAAGCATATTCCGCGAATATACTT 57.565 32.000 19.77 19.77 44.11 2.24
2547 4167 7.435068 AAAAAGCATATTCCGCGAATATACT 57.565 32.000 8.23 12.08 41.52 2.12
2568 4188 2.817258 CACAGAAGCCGACCCATAAAAA 59.183 45.455 0.00 0.00 0.00 1.94
2569 4189 2.432444 CACAGAAGCCGACCCATAAAA 58.568 47.619 0.00 0.00 0.00 1.52
2570 4190 1.339631 CCACAGAAGCCGACCCATAAA 60.340 52.381 0.00 0.00 0.00 1.40
2571 4191 0.251916 CCACAGAAGCCGACCCATAA 59.748 55.000 0.00 0.00 0.00 1.90
2572 4192 1.622607 CCCACAGAAGCCGACCCATA 61.623 60.000 0.00 0.00 0.00 2.74
2573 4193 2.671070 CCACAGAAGCCGACCCAT 59.329 61.111 0.00 0.00 0.00 4.00
2574 4194 3.636231 CCCACAGAAGCCGACCCA 61.636 66.667 0.00 0.00 0.00 4.51
2575 4195 3.192103 AACCCACAGAAGCCGACCC 62.192 63.158 0.00 0.00 0.00 4.46
2576 4196 1.671379 GAACCCACAGAAGCCGACC 60.671 63.158 0.00 0.00 0.00 4.79
2577 4197 0.951040 CAGAACCCACAGAAGCCGAC 60.951 60.000 0.00 0.00 0.00 4.79
2578 4198 1.371183 CAGAACCCACAGAAGCCGA 59.629 57.895 0.00 0.00 0.00 5.54
2579 4199 2.328099 GCAGAACCCACAGAAGCCG 61.328 63.158 0.00 0.00 0.00 5.52
2580 4200 0.957888 GAGCAGAACCCACAGAAGCC 60.958 60.000 0.00 0.00 0.00 4.35
2581 4201 1.294659 CGAGCAGAACCCACAGAAGC 61.295 60.000 0.00 0.00 0.00 3.86
2582 4202 0.671781 CCGAGCAGAACCCACAGAAG 60.672 60.000 0.00 0.00 0.00 2.85
2583 4203 1.371183 CCGAGCAGAACCCACAGAA 59.629 57.895 0.00 0.00 0.00 3.02
2584 4204 2.583441 CCCGAGCAGAACCCACAGA 61.583 63.158 0.00 0.00 0.00 3.41
2585 4205 2.046892 CCCGAGCAGAACCCACAG 60.047 66.667 0.00 0.00 0.00 3.66
2586 4206 4.329545 GCCCGAGCAGAACCCACA 62.330 66.667 0.00 0.00 39.53 4.17
2587 4207 4.329545 TGCCCGAGCAGAACCCAC 62.330 66.667 0.00 0.00 46.52 4.61
2610 4230 1.627879 TTATGTTTACGGGTCGTCGC 58.372 50.000 0.00 0.00 41.54 5.19
2611 4231 4.150451 AGTTTTTATGTTTACGGGTCGTCG 59.850 41.667 0.00 0.00 41.54 5.12
2612 4232 5.376537 CAGTTTTTATGTTTACGGGTCGTC 58.623 41.667 0.00 0.00 41.54 4.20
2613 4233 4.319694 GCAGTTTTTATGTTTACGGGTCGT 60.320 41.667 0.00 0.00 44.35 4.34
2614 4234 4.153256 GCAGTTTTTATGTTTACGGGTCG 58.847 43.478 0.00 0.00 0.00 4.79
2615 4235 5.110940 TGCAGTTTTTATGTTTACGGGTC 57.889 39.130 0.00 0.00 0.00 4.46
2616 4236 5.517322 TTGCAGTTTTTATGTTTACGGGT 57.483 34.783 0.00 0.00 0.00 5.28
2617 4237 6.866248 AGATTTGCAGTTTTTATGTTTACGGG 59.134 34.615 0.00 0.00 0.00 5.28
2618 4238 7.867445 AGATTTGCAGTTTTTATGTTTACGG 57.133 32.000 0.00 0.00 0.00 4.02
2636 4256 5.969423 ACCCTATGTCAAATGCAAGATTTG 58.031 37.500 5.12 5.12 39.61 2.32
2637 4257 6.610075 AACCCTATGTCAAATGCAAGATTT 57.390 33.333 0.00 0.00 0.00 2.17
2638 4258 6.400568 CAAACCCTATGTCAAATGCAAGATT 58.599 36.000 0.00 0.00 0.00 2.40
2639 4259 5.105228 CCAAACCCTATGTCAAATGCAAGAT 60.105 40.000 0.00 0.00 0.00 2.40
2640 4260 4.220382 CCAAACCCTATGTCAAATGCAAGA 59.780 41.667 0.00 0.00 0.00 3.02
2641 4261 4.497300 CCAAACCCTATGTCAAATGCAAG 58.503 43.478 0.00 0.00 0.00 4.01
2642 4262 3.306641 GCCAAACCCTATGTCAAATGCAA 60.307 43.478 0.00 0.00 0.00 4.08
2643 4263 2.233431 GCCAAACCCTATGTCAAATGCA 59.767 45.455 0.00 0.00 0.00 3.96
2644 4264 2.233431 TGCCAAACCCTATGTCAAATGC 59.767 45.455 0.00 0.00 0.00 3.56
2645 4265 4.533919 TTGCCAAACCCTATGTCAAATG 57.466 40.909 0.00 0.00 0.00 2.32
2646 4266 4.346418 TGTTTGCCAAACCCTATGTCAAAT 59.654 37.500 17.16 0.00 40.67 2.32
2647 4267 3.706594 TGTTTGCCAAACCCTATGTCAAA 59.293 39.130 17.16 0.00 40.67 2.69
2648 4268 3.300388 TGTTTGCCAAACCCTATGTCAA 58.700 40.909 17.16 0.00 40.67 3.18
2649 4269 2.950781 TGTTTGCCAAACCCTATGTCA 58.049 42.857 17.16 0.00 40.67 3.58
2650 4270 3.320826 ACTTGTTTGCCAAACCCTATGTC 59.679 43.478 17.16 0.00 40.67 3.06
2651 4271 3.304829 ACTTGTTTGCCAAACCCTATGT 58.695 40.909 17.16 5.11 40.67 2.29
2652 4272 4.202202 TGAACTTGTTTGCCAAACCCTATG 60.202 41.667 17.16 4.53 40.67 2.23
2653 4273 3.964031 TGAACTTGTTTGCCAAACCCTAT 59.036 39.130 17.16 2.07 40.67 2.57
2654 4274 3.366396 TGAACTTGTTTGCCAAACCCTA 58.634 40.909 17.16 2.79 40.67 3.53
2655 4275 2.183679 TGAACTTGTTTGCCAAACCCT 58.816 42.857 17.16 0.00 40.67 4.34
2656 4276 2.682155 TGAACTTGTTTGCCAAACCC 57.318 45.000 17.16 3.06 40.67 4.11
2657 4277 5.123027 TGAATTTGAACTTGTTTGCCAAACC 59.877 36.000 17.16 2.54 40.67 3.27
2658 4278 6.175712 TGAATTTGAACTTGTTTGCCAAAC 57.824 33.333 13.35 13.35 41.73 2.93
2659 4279 6.808008 TTGAATTTGAACTTGTTTGCCAAA 57.192 29.167 0.00 0.00 31.20 3.28
2660 4280 6.205464 TGTTTGAATTTGAACTTGTTTGCCAA 59.795 30.769 6.48 0.00 0.00 4.52
2661 4281 5.702670 TGTTTGAATTTGAACTTGTTTGCCA 59.297 32.000 6.48 0.00 0.00 4.92
2662 4282 6.175712 TGTTTGAATTTGAACTTGTTTGCC 57.824 33.333 6.48 0.00 0.00 4.52
2663 4283 7.074502 TGTTGTTTGAATTTGAACTTGTTTGC 58.925 30.769 6.48 0.00 0.00 3.68
2670 4290 9.651913 ACTGTTTATGTTGTTTGAATTTGAACT 57.348 25.926 6.48 0.00 0.00 3.01
2674 4294 8.997960 GCAAACTGTTTATGTTGTTTGAATTTG 58.002 29.630 17.84 0.00 46.90 2.32
2675 4295 7.902403 CGCAAACTGTTTATGTTGTTTGAATTT 59.098 29.630 17.84 0.00 46.90 1.82
2676 4296 7.397970 CGCAAACTGTTTATGTTGTTTGAATT 58.602 30.769 17.84 0.00 46.90 2.17
2677 4297 6.509358 GCGCAAACTGTTTATGTTGTTTGAAT 60.509 34.615 17.84 0.00 46.90 2.57
2678 4298 5.220303 GCGCAAACTGTTTATGTTGTTTGAA 60.220 36.000 17.84 0.00 46.90 2.69
2679 4299 4.266502 GCGCAAACTGTTTATGTTGTTTGA 59.733 37.500 17.84 0.00 46.90 2.69
2680 4300 4.504385 GCGCAAACTGTTTATGTTGTTTG 58.496 39.130 0.30 11.57 46.76 2.93
2681 4301 3.241784 CGCGCAAACTGTTTATGTTGTTT 59.758 39.130 8.75 0.00 33.56 2.83
2682 4302 2.786578 CGCGCAAACTGTTTATGTTGTT 59.213 40.909 8.75 0.00 0.00 2.83
2683 4303 2.380660 CGCGCAAACTGTTTATGTTGT 58.619 42.857 8.75 0.00 0.00 3.32
2684 4304 1.122323 GCGCGCAAACTGTTTATGTTG 59.878 47.619 29.10 0.00 0.00 3.33
2685 4305 1.268794 TGCGCGCAAACTGTTTATGTT 60.269 42.857 34.66 0.00 0.00 2.71
2686 4306 0.309302 TGCGCGCAAACTGTTTATGT 59.691 45.000 34.66 0.00 0.00 2.29
2687 4307 1.403493 TTGCGCGCAAACTGTTTATG 58.597 45.000 41.45 2.77 32.44 1.90
2688 4308 2.126914 TTTGCGCGCAAACTGTTTAT 57.873 40.000 45.17 0.00 40.51 1.40
2689 4309 3.624305 TTTGCGCGCAAACTGTTTA 57.376 42.105 45.17 28.20 40.51 2.01
2690 4310 4.485554 TTTGCGCGCAAACTGTTT 57.514 44.444 45.17 0.00 40.51 2.83
2697 4317 1.755161 TCGTTTTAATTTGCGCGCAA 58.245 40.000 40.23 40.23 0.00 4.85
2698 4318 1.711298 CTTCGTTTTAATTTGCGCGCA 59.289 42.857 33.09 33.09 0.00 6.09
2699 4319 1.711824 ACTTCGTTTTAATTTGCGCGC 59.288 42.857 27.26 27.26 0.00 6.86
2700 4320 3.419270 TGAACTTCGTTTTAATTTGCGCG 59.581 39.130 0.00 0.00 0.00 6.86
2701 4321 4.939948 TGAACTTCGTTTTAATTTGCGC 57.060 36.364 0.00 0.00 0.00 6.09
2702 4322 7.148696 CGTAATGAACTTCGTTTTAATTTGCG 58.851 34.615 1.53 0.00 0.00 4.85
2703 4323 6.940597 GCGTAATGAACTTCGTTTTAATTTGC 59.059 34.615 1.53 0.00 0.00 3.68
2704 4324 7.987486 TGCGTAATGAACTTCGTTTTAATTTG 58.013 30.769 1.53 0.00 0.00 2.32
2705 4325 8.563289 TTGCGTAATGAACTTCGTTTTAATTT 57.437 26.923 1.53 0.00 0.00 1.82
2706 4326 8.563289 TTTGCGTAATGAACTTCGTTTTAATT 57.437 26.923 1.53 0.00 0.00 1.40
2707 4327 8.563289 TTTTGCGTAATGAACTTCGTTTTAAT 57.437 26.923 1.53 0.00 0.00 1.40
2708 4328 7.909121 TCTTTTGCGTAATGAACTTCGTTTTAA 59.091 29.630 1.53 0.00 0.00 1.52
2709 4329 7.408123 TCTTTTGCGTAATGAACTTCGTTTTA 58.592 30.769 1.53 0.00 0.00 1.52
2710 4330 6.259638 TCTTTTGCGTAATGAACTTCGTTTT 58.740 32.000 1.53 0.00 0.00 2.43
2711 4331 5.812652 TCTTTTGCGTAATGAACTTCGTTT 58.187 33.333 1.53 0.00 0.00 3.60
2712 4332 5.412526 TCTTTTGCGTAATGAACTTCGTT 57.587 34.783 1.87 1.87 0.00 3.85
2713 4333 4.084013 CCTCTTTTGCGTAATGAACTTCGT 60.084 41.667 0.00 0.00 0.00 3.85
2714 4334 4.151689 TCCTCTTTTGCGTAATGAACTTCG 59.848 41.667 0.00 0.00 0.00 3.79
2715 4335 5.049680 TGTCCTCTTTTGCGTAATGAACTTC 60.050 40.000 0.00 0.00 0.00 3.01
2716 4336 4.819630 TGTCCTCTTTTGCGTAATGAACTT 59.180 37.500 0.00 0.00 0.00 2.66
2717 4337 4.385825 TGTCCTCTTTTGCGTAATGAACT 58.614 39.130 0.00 0.00 0.00 3.01
2718 4338 4.742438 TGTCCTCTTTTGCGTAATGAAC 57.258 40.909 0.00 0.00 0.00 3.18
2719 4339 4.379394 GCATGTCCTCTTTTGCGTAATGAA 60.379 41.667 0.00 0.00 0.00 2.57
2720 4340 3.126858 GCATGTCCTCTTTTGCGTAATGA 59.873 43.478 0.00 0.00 0.00 2.57
2721 4341 3.119884 TGCATGTCCTCTTTTGCGTAATG 60.120 43.478 0.00 0.00 37.92 1.90
2722 4342 3.081061 TGCATGTCCTCTTTTGCGTAAT 58.919 40.909 0.00 0.00 37.92 1.89
2723 4343 2.483877 CTGCATGTCCTCTTTTGCGTAA 59.516 45.455 0.00 0.00 37.92 3.18
2724 4344 2.076100 CTGCATGTCCTCTTTTGCGTA 58.924 47.619 0.00 0.00 37.92 4.42
2725 4345 0.877071 CTGCATGTCCTCTTTTGCGT 59.123 50.000 0.00 0.00 37.92 5.24
2726 4346 1.129998 CTCTGCATGTCCTCTTTTGCG 59.870 52.381 0.00 0.00 37.92 4.85
2727 4347 1.471684 CCTCTGCATGTCCTCTTTTGC 59.528 52.381 0.00 0.00 35.67 3.68
2728 4348 2.787994 ACCTCTGCATGTCCTCTTTTG 58.212 47.619 0.00 0.00 0.00 2.44
2729 4349 3.515602 AACCTCTGCATGTCCTCTTTT 57.484 42.857 0.00 0.00 0.00 2.27
2730 4350 3.152341 CAAACCTCTGCATGTCCTCTTT 58.848 45.455 0.00 0.00 0.00 2.52
2731 4351 2.787994 CAAACCTCTGCATGTCCTCTT 58.212 47.619 0.00 0.00 0.00 2.85
2732 4352 1.612726 GCAAACCTCTGCATGTCCTCT 60.613 52.381 0.00 0.00 42.17 3.69
2733 4353 0.807496 GCAAACCTCTGCATGTCCTC 59.193 55.000 0.00 0.00 42.17 3.71
2734 4354 0.957395 CGCAAACCTCTGCATGTCCT 60.957 55.000 0.00 0.00 42.77 3.85
2735 4355 1.503542 CGCAAACCTCTGCATGTCC 59.496 57.895 0.00 0.00 42.77 4.02
2736 4356 1.154150 GCGCAAACCTCTGCATGTC 60.154 57.895 0.30 0.00 42.77 3.06
2737 4357 2.629656 GGCGCAAACCTCTGCATGT 61.630 57.895 10.83 0.00 42.77 3.21
2738 4358 2.144833 TTGGCGCAAACCTCTGCATG 62.145 55.000 10.83 0.00 42.77 4.06
2739 4359 1.252904 ATTGGCGCAAACCTCTGCAT 61.253 50.000 10.83 0.00 42.77 3.96
2740 4360 1.902918 ATTGGCGCAAACCTCTGCA 60.903 52.632 10.83 0.00 42.77 4.41
2741 4361 1.444895 CATTGGCGCAAACCTCTGC 60.445 57.895 10.83 0.00 39.04 4.26
2742 4362 0.314935 AACATTGGCGCAAACCTCTG 59.685 50.000 10.83 1.28 0.00 3.35
2743 4363 0.598065 GAACATTGGCGCAAACCTCT 59.402 50.000 10.83 0.00 0.00 3.69
2744 4364 0.729140 CGAACATTGGCGCAAACCTC 60.729 55.000 10.83 0.66 0.00 3.85
2745 4365 1.285641 CGAACATTGGCGCAAACCT 59.714 52.632 10.83 0.00 0.00 3.50
2746 4366 1.732683 CCGAACATTGGCGCAAACC 60.733 57.895 10.83 0.00 0.00 3.27
2747 4367 2.371923 GCCGAACATTGGCGCAAAC 61.372 57.895 10.83 0.00 43.70 2.93
2748 4368 2.049618 GCCGAACATTGGCGCAAA 60.050 55.556 10.83 3.91 43.70 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.