Multiple sequence alignment - TraesCS7B01G179100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G179100 chr7B 100.000 2978 0 0 1 2978 263144930 263141953 0 5500
1 TraesCS7B01G179100 chr7A 99.323 2511 11 3 468 2978 204164362 204166866 0 4538
2 TraesCS7B01G179100 chr7A 96.538 520 15 2 467 986 424544505 424543989 0 857
3 TraesCS7B01G179100 chr4A 99.165 2515 14 3 470 2978 35615016 35612503 0 4521
4 TraesCS7B01G179100 chr4A 93.460 474 26 3 1 470 536329423 536329895 0 699
5 TraesCS7B01G179100 chr4B 99.123 2509 11 5 470 2978 660455225 660452728 0 4501
6 TraesCS7B01G179100 chr4B 98.604 2508 16 2 471 2978 142053854 142051366 0 4420
7 TraesCS7B01G179100 chr4B 98.487 2511 18 3 469 2978 113965505 113967996 0 4409
8 TraesCS7B01G179100 chr2B 98.649 2517 25 2 471 2978 338772765 338770249 0 4451
9 TraesCS7B01G179100 chr2B 97.932 2514 30 3 471 2978 329480851 329483348 0 4335
10 TraesCS7B01G179100 chr1B 98.644 2508 15 4 470 2974 242246336 242243845 0 4425
11 TraesCS7B01G179100 chr1B 93.038 474 28 3 1 470 229536733 229537205 0 688
12 TraesCS7B01G179100 chr6B 99.441 2325 10 1 657 2978 417231859 417234183 0 4218
13 TraesCS7B01G179100 chr6B 94.093 474 23 3 1 470 21202660 21203132 0 715
14 TraesCS7B01G179100 chr3B 94.043 470 26 2 1 470 98702344 98701877 0 712
15 TraesCS7B01G179100 chr3B 93.882 474 24 3 1 470 810403769 810403297 0 710
16 TraesCS7B01G179100 chr5B 93.830 470 27 2 1 470 190586041 190585574 0 706
17 TraesCS7B01G179100 chr2A 93.460 474 26 3 1 470 740733522 740733994 0 699
18 TraesCS7B01G179100 chr2A 93.111 479 23 5 1 470 157905833 157906310 0 693
19 TraesCS7B01G179100 chr6A 93.249 474 27 3 1 470 568063123 568062651 0 693


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G179100 chr7B 263141953 263144930 2977 True 5500 5500 100.000 1 2978 1 chr7B.!!$R1 2977
1 TraesCS7B01G179100 chr7A 204164362 204166866 2504 False 4538 4538 99.323 468 2978 1 chr7A.!!$F1 2510
2 TraesCS7B01G179100 chr7A 424543989 424544505 516 True 857 857 96.538 467 986 1 chr7A.!!$R1 519
3 TraesCS7B01G179100 chr4A 35612503 35615016 2513 True 4521 4521 99.165 470 2978 1 chr4A.!!$R1 2508
4 TraesCS7B01G179100 chr4B 660452728 660455225 2497 True 4501 4501 99.123 470 2978 1 chr4B.!!$R2 2508
5 TraesCS7B01G179100 chr4B 142051366 142053854 2488 True 4420 4420 98.604 471 2978 1 chr4B.!!$R1 2507
6 TraesCS7B01G179100 chr4B 113965505 113967996 2491 False 4409 4409 98.487 469 2978 1 chr4B.!!$F1 2509
7 TraesCS7B01G179100 chr2B 338770249 338772765 2516 True 4451 4451 98.649 471 2978 1 chr2B.!!$R1 2507
8 TraesCS7B01G179100 chr2B 329480851 329483348 2497 False 4335 4335 97.932 471 2978 1 chr2B.!!$F1 2507
9 TraesCS7B01G179100 chr1B 242243845 242246336 2491 True 4425 4425 98.644 470 2974 1 chr1B.!!$R1 2504
10 TraesCS7B01G179100 chr6B 417231859 417234183 2324 False 4218 4218 99.441 657 2978 1 chr6B.!!$F2 2321

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 327 0.036483 AGACATGGCATGTGCGTACA 60.036 50.0 35.82 9.28 45.03 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2818 2885 7.561021 TGTAAATTTGAAGCACTTGACTACA 57.439 32.0 0.0 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.956508 TGAAAAACTGTTGTTGTTATGTACG 57.043 32.000 0.00 0.00 34.04 3.67
33 34 6.469595 TGAAAAACTGTTGTTGTTATGTACGC 59.530 34.615 0.00 0.00 34.04 4.42
34 35 5.487153 AAACTGTTGTTGTTATGTACGCA 57.513 34.783 0.00 0.00 36.39 5.24
35 36 5.682943 AACTGTTGTTGTTATGTACGCAT 57.317 34.783 0.00 0.00 35.73 4.73
36 37 5.029650 ACTGTTGTTGTTATGTACGCATG 57.970 39.130 0.00 0.00 36.58 4.06
37 38 4.752604 ACTGTTGTTGTTATGTACGCATGA 59.247 37.500 0.00 0.00 36.58 3.07
38 39 5.411361 ACTGTTGTTGTTATGTACGCATGAT 59.589 36.000 0.00 0.00 36.58 2.45
39 40 6.592220 ACTGTTGTTGTTATGTACGCATGATA 59.408 34.615 0.00 0.00 36.58 2.15
40 41 6.767080 TGTTGTTGTTATGTACGCATGATAC 58.233 36.000 0.00 0.00 36.58 2.24
41 42 6.369065 TGTTGTTGTTATGTACGCATGATACA 59.631 34.615 11.39 11.39 36.98 2.29
42 43 6.582437 TGTTGTTATGTACGCATGATACAG 57.418 37.500 13.66 0.00 36.04 2.74
43 44 6.103330 TGTTGTTATGTACGCATGATACAGT 58.897 36.000 13.66 6.91 36.04 3.55
44 45 7.259161 TGTTGTTATGTACGCATGATACAGTA 58.741 34.615 13.66 4.31 36.04 2.74
45 46 7.221259 TGTTGTTATGTACGCATGATACAGTAC 59.779 37.037 13.66 13.19 36.04 2.73
46 47 7.034685 TGTTATGTACGCATGATACAGTACT 57.965 36.000 13.66 0.00 39.87 2.73
47 48 8.156994 TGTTATGTACGCATGATACAGTACTA 57.843 34.615 13.66 2.16 39.87 1.82
48 49 8.287503 TGTTATGTACGCATGATACAGTACTAG 58.712 37.037 13.66 0.00 39.87 2.57
49 50 8.501580 GTTATGTACGCATGATACAGTACTAGA 58.498 37.037 13.66 0.00 39.87 2.43
50 51 6.541111 TGTACGCATGATACAGTACTAGAG 57.459 41.667 0.00 0.00 39.87 2.43
51 52 6.053650 TGTACGCATGATACAGTACTAGAGT 58.946 40.000 0.00 0.00 39.87 3.24
52 53 6.541278 TGTACGCATGATACAGTACTAGAGTT 59.459 38.462 0.00 0.00 39.87 3.01
53 54 5.822278 ACGCATGATACAGTACTAGAGTTG 58.178 41.667 0.00 0.00 0.00 3.16
54 55 5.357314 ACGCATGATACAGTACTAGAGTTGT 59.643 40.000 0.00 0.00 0.00 3.32
55 56 6.541278 ACGCATGATACAGTACTAGAGTTGTA 59.459 38.462 0.00 2.23 0.00 2.41
56 57 7.228906 ACGCATGATACAGTACTAGAGTTGTAT 59.771 37.037 13.59 13.59 35.70 2.29
57 58 7.535599 CGCATGATACAGTACTAGAGTTGTATG 59.464 40.741 16.62 10.08 34.13 2.39
58 59 7.327275 GCATGATACAGTACTAGAGTTGTATGC 59.673 40.741 16.62 14.00 34.13 3.14
59 60 7.875327 TGATACAGTACTAGAGTTGTATGCA 57.125 36.000 16.62 0.00 34.13 3.96
60 61 7.931275 TGATACAGTACTAGAGTTGTATGCAG 58.069 38.462 16.62 0.00 34.13 4.41
61 62 5.584253 ACAGTACTAGAGTTGTATGCAGG 57.416 43.478 0.00 0.00 0.00 4.85
62 63 5.262009 ACAGTACTAGAGTTGTATGCAGGA 58.738 41.667 0.00 0.00 0.00 3.86
63 64 5.894393 ACAGTACTAGAGTTGTATGCAGGAT 59.106 40.000 0.00 0.00 0.00 3.24
64 65 7.061054 ACAGTACTAGAGTTGTATGCAGGATA 58.939 38.462 0.00 0.00 0.00 2.59
65 66 7.726291 ACAGTACTAGAGTTGTATGCAGGATAT 59.274 37.037 0.00 0.00 0.00 1.63
66 67 9.232473 CAGTACTAGAGTTGTATGCAGGATATA 57.768 37.037 0.00 0.00 0.00 0.86
67 68 9.456147 AGTACTAGAGTTGTATGCAGGATATAG 57.544 37.037 0.00 0.00 0.00 1.31
68 69 9.233649 GTACTAGAGTTGTATGCAGGATATAGT 57.766 37.037 0.00 5.24 0.00 2.12
70 71 9.233649 ACTAGAGTTGTATGCAGGATATAGTAC 57.766 37.037 0.00 0.00 0.00 2.73
71 72 9.456147 CTAGAGTTGTATGCAGGATATAGTACT 57.544 37.037 0.00 0.00 0.00 2.73
73 74 9.456147 AGAGTTGTATGCAGGATATAGTACTAG 57.544 37.037 8.85 0.00 0.00 2.57
74 75 9.451002 GAGTTGTATGCAGGATATAGTACTAGA 57.549 37.037 8.85 3.97 0.00 2.43
75 76 9.456147 AGTTGTATGCAGGATATAGTACTAGAG 57.544 37.037 8.85 0.00 0.00 2.43
76 77 9.233649 GTTGTATGCAGGATATAGTACTAGAGT 57.766 37.037 8.85 0.00 0.00 3.24
77 78 9.809395 TTGTATGCAGGATATAGTACTAGAGTT 57.191 33.333 8.85 0.00 0.00 3.01
78 79 9.232473 TGTATGCAGGATATAGTACTAGAGTTG 57.768 37.037 8.85 5.29 0.00 3.16
79 80 7.710676 ATGCAGGATATAGTACTAGAGTTGG 57.289 40.000 8.85 0.00 0.00 3.77
80 81 6.849151 TGCAGGATATAGTACTAGAGTTGGA 58.151 40.000 8.85 2.85 0.00 3.53
81 82 7.295340 TGCAGGATATAGTACTAGAGTTGGAA 58.705 38.462 8.85 0.00 0.00 3.53
82 83 7.950684 TGCAGGATATAGTACTAGAGTTGGAAT 59.049 37.037 8.85 0.00 0.00 3.01
83 84 8.808092 GCAGGATATAGTACTAGAGTTGGAATT 58.192 37.037 8.85 0.00 0.00 2.17
89 90 6.301169 AGTACTAGAGTTGGAATTTCAGGG 57.699 41.667 0.00 0.00 0.00 4.45
90 91 3.956744 ACTAGAGTTGGAATTTCAGGGC 58.043 45.455 0.00 0.00 0.00 5.19
91 92 2.978156 AGAGTTGGAATTTCAGGGCA 57.022 45.000 0.00 0.00 0.00 5.36
92 93 3.463048 AGAGTTGGAATTTCAGGGCAT 57.537 42.857 0.00 0.00 0.00 4.40
93 94 3.359950 AGAGTTGGAATTTCAGGGCATC 58.640 45.455 0.00 0.00 0.00 3.91
94 95 2.428530 GAGTTGGAATTTCAGGGCATCC 59.571 50.000 0.00 0.00 0.00 3.51
95 96 2.178580 GTTGGAATTTCAGGGCATCCA 58.821 47.619 0.00 0.00 38.36 3.41
96 97 2.566724 GTTGGAATTTCAGGGCATCCAA 59.433 45.455 1.60 1.60 45.33 3.53
97 98 2.899975 TGGAATTTCAGGGCATCCAAA 58.100 42.857 0.00 0.00 37.24 3.28
98 99 3.246301 TGGAATTTCAGGGCATCCAAAA 58.754 40.909 0.00 0.00 37.24 2.44
99 100 3.649981 TGGAATTTCAGGGCATCCAAAAA 59.350 39.130 0.00 0.00 37.24 1.94
100 101 4.256110 GGAATTTCAGGGCATCCAAAAAG 58.744 43.478 0.00 0.00 34.83 2.27
101 102 4.020307 GGAATTTCAGGGCATCCAAAAAGA 60.020 41.667 0.00 0.00 34.83 2.52
102 103 5.512921 GGAATTTCAGGGCATCCAAAAAGAA 60.513 40.000 0.00 0.00 34.83 2.52
103 104 4.335400 TTTCAGGGCATCCAAAAAGAAC 57.665 40.909 0.00 0.00 34.83 3.01
104 105 3.243359 TCAGGGCATCCAAAAAGAACT 57.757 42.857 0.00 0.00 34.83 3.01
105 106 3.575805 TCAGGGCATCCAAAAAGAACTT 58.424 40.909 0.00 0.00 34.83 2.66
106 107 4.735369 TCAGGGCATCCAAAAAGAACTTA 58.265 39.130 0.00 0.00 34.83 2.24
107 108 4.522789 TCAGGGCATCCAAAAAGAACTTAC 59.477 41.667 0.00 0.00 34.83 2.34
108 109 4.524328 CAGGGCATCCAAAAAGAACTTACT 59.476 41.667 0.00 0.00 34.83 2.24
109 110 5.710099 CAGGGCATCCAAAAAGAACTTACTA 59.290 40.000 0.00 0.00 34.83 1.82
110 111 6.378280 CAGGGCATCCAAAAAGAACTTACTAT 59.622 38.462 0.00 0.00 34.83 2.12
111 112 6.378280 AGGGCATCCAAAAAGAACTTACTATG 59.622 38.462 0.00 0.00 34.83 2.23
112 113 6.036470 GGCATCCAAAAAGAACTTACTATGC 58.964 40.000 0.00 0.00 36.22 3.14
113 114 6.127619 GGCATCCAAAAAGAACTTACTATGCT 60.128 38.462 0.00 0.00 36.95 3.79
114 115 7.315890 GCATCCAAAAAGAACTTACTATGCTT 58.684 34.615 0.00 0.00 34.61 3.91
115 116 7.486232 GCATCCAAAAAGAACTTACTATGCTTC 59.514 37.037 0.00 0.00 34.61 3.86
116 117 8.514594 CATCCAAAAAGAACTTACTATGCTTCA 58.485 33.333 0.00 0.00 0.00 3.02
117 118 8.099364 TCCAAAAAGAACTTACTATGCTTCAG 57.901 34.615 0.00 0.00 0.00 3.02
118 119 6.803807 CCAAAAAGAACTTACTATGCTTCAGC 59.196 38.462 0.00 0.00 42.50 4.26
119 120 6.502136 AAAAGAACTTACTATGCTTCAGCC 57.498 37.500 0.00 0.00 41.18 4.85
120 121 4.143986 AGAACTTACTATGCTTCAGCCC 57.856 45.455 0.00 0.00 41.18 5.19
121 122 3.519510 AGAACTTACTATGCTTCAGCCCA 59.480 43.478 0.00 0.00 41.18 5.36
122 123 4.164988 AGAACTTACTATGCTTCAGCCCAT 59.835 41.667 0.00 0.00 41.18 4.00
123 124 3.813443 ACTTACTATGCTTCAGCCCATG 58.187 45.455 0.00 0.00 41.18 3.66
124 125 3.200825 ACTTACTATGCTTCAGCCCATGT 59.799 43.478 0.00 0.00 41.18 3.21
125 126 2.814805 ACTATGCTTCAGCCCATGTT 57.185 45.000 0.00 0.00 41.18 2.71
126 127 3.091633 ACTATGCTTCAGCCCATGTTT 57.908 42.857 0.00 0.00 41.18 2.83
127 128 3.434309 ACTATGCTTCAGCCCATGTTTT 58.566 40.909 0.00 0.00 41.18 2.43
128 129 3.445096 ACTATGCTTCAGCCCATGTTTTC 59.555 43.478 0.00 0.00 41.18 2.29
129 130 1.999648 TGCTTCAGCCCATGTTTTCT 58.000 45.000 0.00 0.00 41.18 2.52
130 131 3.153369 TGCTTCAGCCCATGTTTTCTA 57.847 42.857 0.00 0.00 41.18 2.10
131 132 2.819608 TGCTTCAGCCCATGTTTTCTAC 59.180 45.455 0.00 0.00 41.18 2.59
132 133 2.164422 GCTTCAGCCCATGTTTTCTACC 59.836 50.000 0.00 0.00 34.31 3.18
133 134 3.420893 CTTCAGCCCATGTTTTCTACCA 58.579 45.455 0.00 0.00 0.00 3.25
134 135 3.737559 TCAGCCCATGTTTTCTACCAT 57.262 42.857 0.00 0.00 0.00 3.55
135 136 4.046286 TCAGCCCATGTTTTCTACCATT 57.954 40.909 0.00 0.00 0.00 3.16
136 137 3.763360 TCAGCCCATGTTTTCTACCATTG 59.237 43.478 0.00 0.00 0.00 2.82
137 138 2.497273 AGCCCATGTTTTCTACCATTGC 59.503 45.455 0.00 0.00 0.00 3.56
138 139 2.497273 GCCCATGTTTTCTACCATTGCT 59.503 45.455 0.00 0.00 0.00 3.91
139 140 3.055891 GCCCATGTTTTCTACCATTGCTT 60.056 43.478 0.00 0.00 0.00 3.91
140 141 4.497300 CCCATGTTTTCTACCATTGCTTG 58.503 43.478 0.00 0.00 0.00 4.01
141 142 3.928375 CCATGTTTTCTACCATTGCTTGC 59.072 43.478 0.00 0.00 0.00 4.01
142 143 4.322198 CCATGTTTTCTACCATTGCTTGCT 60.322 41.667 0.00 0.00 0.00 3.91
143 144 4.935352 TGTTTTCTACCATTGCTTGCTT 57.065 36.364 0.00 0.00 0.00 3.91
144 145 5.275067 TGTTTTCTACCATTGCTTGCTTT 57.725 34.783 0.00 0.00 0.00 3.51
145 146 5.669477 TGTTTTCTACCATTGCTTGCTTTT 58.331 33.333 0.00 0.00 0.00 2.27
146 147 6.810911 TGTTTTCTACCATTGCTTGCTTTTA 58.189 32.000 0.00 0.00 0.00 1.52
147 148 7.441017 TGTTTTCTACCATTGCTTGCTTTTAT 58.559 30.769 0.00 0.00 0.00 1.40
148 149 7.930865 TGTTTTCTACCATTGCTTGCTTTTATT 59.069 29.630 0.00 0.00 0.00 1.40
149 150 8.773645 GTTTTCTACCATTGCTTGCTTTTATTT 58.226 29.630 0.00 0.00 0.00 1.40
150 151 7.887996 TTCTACCATTGCTTGCTTTTATTTG 57.112 32.000 0.00 0.00 0.00 2.32
151 152 7.225784 TCTACCATTGCTTGCTTTTATTTGA 57.774 32.000 0.00 0.00 0.00 2.69
152 153 7.665690 TCTACCATTGCTTGCTTTTATTTGAA 58.334 30.769 0.00 0.00 0.00 2.69
153 154 8.147058 TCTACCATTGCTTGCTTTTATTTGAAA 58.853 29.630 0.00 0.00 0.00 2.69
154 155 7.565323 ACCATTGCTTGCTTTTATTTGAAAA 57.435 28.000 0.00 0.00 0.00 2.29
155 156 7.994194 ACCATTGCTTGCTTTTATTTGAAAAA 58.006 26.923 0.00 0.00 0.00 1.94
156 157 7.914871 ACCATTGCTTGCTTTTATTTGAAAAAC 59.085 29.630 0.00 0.00 0.00 2.43
157 158 8.130469 CCATTGCTTGCTTTTATTTGAAAAACT 58.870 29.630 0.00 0.00 0.00 2.66
158 159 8.949953 CATTGCTTGCTTTTATTTGAAAAACTG 58.050 29.630 0.00 0.00 0.00 3.16
159 160 7.608308 TGCTTGCTTTTATTTGAAAAACTGT 57.392 28.000 0.00 0.00 0.00 3.55
160 161 8.038492 TGCTTGCTTTTATTTGAAAAACTGTT 57.962 26.923 0.00 0.00 0.00 3.16
161 162 7.961827 TGCTTGCTTTTATTTGAAAAACTGTTG 59.038 29.630 0.00 0.00 0.00 3.33
162 163 7.962373 GCTTGCTTTTATTTGAAAAACTGTTGT 59.038 29.630 0.00 0.00 0.00 3.32
163 164 9.824534 CTTGCTTTTATTTGAAAAACTGTTGTT 57.175 25.926 0.00 0.00 38.16 2.83
164 165 9.604626 TTGCTTTTATTTGAAAAACTGTTGTTG 57.395 25.926 0.00 0.00 36.39 3.33
165 166 8.778358 TGCTTTTATTTGAAAAACTGTTGTTGT 58.222 25.926 0.00 0.00 36.39 3.32
166 167 9.605955 GCTTTTATTTGAAAAACTGTTGTTGTT 57.394 25.926 0.00 0.00 36.40 2.83
174 175 8.346476 TGAAAAACTGTTGTTGTTATGTATGC 57.654 30.769 0.00 0.00 34.04 3.14
175 176 7.976175 TGAAAAACTGTTGTTGTTATGTATGCA 59.024 29.630 0.00 0.00 34.04 3.96
176 177 8.709386 AAAAACTGTTGTTGTTATGTATGCAA 57.291 26.923 0.00 0.00 36.39 4.08
177 178 7.928908 AAACTGTTGTTGTTATGTATGCAAG 57.071 32.000 0.00 0.00 36.39 4.01
178 179 6.875948 ACTGTTGTTGTTATGTATGCAAGA 57.124 33.333 0.00 0.00 0.00 3.02
179 180 7.452880 ACTGTTGTTGTTATGTATGCAAGAT 57.547 32.000 0.00 0.00 0.00 2.40
180 181 8.560355 ACTGTTGTTGTTATGTATGCAAGATA 57.440 30.769 0.00 0.00 0.00 1.98
181 182 8.450964 ACTGTTGTTGTTATGTATGCAAGATAC 58.549 33.333 0.00 0.00 0.00 2.24
182 183 8.329203 TGTTGTTGTTATGTATGCAAGATACA 57.671 30.769 1.32 1.32 38.66 2.29
183 184 8.787852 TGTTGTTGTTATGTATGCAAGATACAA 58.212 29.630 2.92 1.47 37.93 2.41
184 185 9.787532 GTTGTTGTTATGTATGCAAGATACAAT 57.212 29.630 2.92 0.00 37.93 2.71
194 195 9.750125 TGTATGCAAGATACAATACTAGAGTTG 57.250 33.333 0.00 3.52 32.19 3.16
195 196 9.197694 GTATGCAAGATACAATACTAGAGTTGG 57.802 37.037 13.60 0.00 0.00 3.77
196 197 7.418337 TGCAAGATACAATACTAGAGTTGGA 57.582 36.000 13.60 7.67 0.00 3.53
197 198 7.847096 TGCAAGATACAATACTAGAGTTGGAA 58.153 34.615 13.60 4.98 0.00 3.53
198 199 8.486210 TGCAAGATACAATACTAGAGTTGGAAT 58.514 33.333 13.60 8.33 0.00 3.01
199 200 9.331282 GCAAGATACAATACTAGAGTTGGAATT 57.669 33.333 13.60 5.17 0.00 2.17
204 205 9.838339 ATACAATACTAGAGTTGGAATTTCAGG 57.162 33.333 13.60 0.00 0.00 3.86
205 206 7.112779 ACAATACTAGAGTTGGAATTTCAGGG 58.887 38.462 13.60 0.00 0.00 4.45
206 207 3.956744 ACTAGAGTTGGAATTTCAGGGC 58.043 45.455 0.00 0.00 0.00 5.19
207 208 2.978156 AGAGTTGGAATTTCAGGGCA 57.022 45.000 0.00 0.00 0.00 5.36
208 209 3.463048 AGAGTTGGAATTTCAGGGCAT 57.537 42.857 0.00 0.00 0.00 4.40
209 210 3.359950 AGAGTTGGAATTTCAGGGCATC 58.640 45.455 0.00 0.00 0.00 3.91
210 211 2.428530 GAGTTGGAATTTCAGGGCATCC 59.571 50.000 0.00 0.00 0.00 3.51
211 212 2.178580 GTTGGAATTTCAGGGCATCCA 58.821 47.619 0.00 0.00 38.36 3.41
212 213 2.566724 GTTGGAATTTCAGGGCATCCAA 59.433 45.455 1.60 1.60 45.33 3.53
213 214 2.899975 TGGAATTTCAGGGCATCCAAA 58.100 42.857 0.00 0.00 37.24 3.28
214 215 3.246301 TGGAATTTCAGGGCATCCAAAA 58.754 40.909 0.00 0.00 37.24 2.44
215 216 3.649981 TGGAATTTCAGGGCATCCAAAAA 59.350 39.130 0.00 0.00 37.24 1.94
216 217 4.256110 GGAATTTCAGGGCATCCAAAAAG 58.744 43.478 0.00 0.00 34.83 2.27
217 218 4.020307 GGAATTTCAGGGCATCCAAAAAGA 60.020 41.667 0.00 0.00 34.83 2.52
218 219 5.512921 GGAATTTCAGGGCATCCAAAAAGAA 60.513 40.000 0.00 0.00 34.83 2.52
219 220 5.767277 ATTTCAGGGCATCCAAAAAGAAT 57.233 34.783 0.00 0.00 34.83 2.40
220 221 5.565455 TTTCAGGGCATCCAAAAAGAATT 57.435 34.783 0.00 0.00 34.83 2.17
221 222 5.565455 TTCAGGGCATCCAAAAAGAATTT 57.435 34.783 0.00 0.00 35.84 1.82
222 223 6.678568 TTCAGGGCATCCAAAAAGAATTTA 57.321 33.333 0.00 0.00 33.78 1.40
223 224 6.036577 TCAGGGCATCCAAAAAGAATTTAC 57.963 37.500 0.00 0.00 33.78 2.01
224 225 5.779771 TCAGGGCATCCAAAAAGAATTTACT 59.220 36.000 0.00 0.00 33.78 2.24
225 226 6.951198 TCAGGGCATCCAAAAAGAATTTACTA 59.049 34.615 0.00 0.00 33.78 1.82
226 227 7.619302 TCAGGGCATCCAAAAAGAATTTACTAT 59.381 33.333 0.00 0.00 33.78 2.12
227 228 7.707893 CAGGGCATCCAAAAAGAATTTACTATG 59.292 37.037 0.00 0.00 33.78 2.23
228 229 6.479990 GGGCATCCAAAAAGAATTTACTATGC 59.520 38.462 0.00 0.00 37.28 3.14
229 230 7.267857 GGCATCCAAAAAGAATTTACTATGCT 58.732 34.615 0.00 0.00 37.28 3.79
230 231 7.765819 GGCATCCAAAAAGAATTTACTATGCTT 59.234 33.333 0.00 0.00 37.28 3.91
231 232 8.811378 GCATCCAAAAAGAATTTACTATGCTTC 58.189 33.333 0.00 0.00 37.28 3.86
232 233 9.859427 CATCCAAAAAGAATTTACTATGCTTCA 57.141 29.630 0.00 0.00 37.28 3.02
234 235 8.522830 TCCAAAAAGAATTTACTATGCTTCAGG 58.477 33.333 0.00 0.00 37.28 3.86
235 236 8.306761 CCAAAAAGAATTTACTATGCTTCAGGT 58.693 33.333 0.00 0.00 37.28 4.00
239 240 9.959721 AAAGAATTTACTATGCTTCAGGTAAGA 57.040 29.630 0.00 0.00 35.86 2.10
240 241 9.959721 AAGAATTTACTATGCTTCAGGTAAGAA 57.040 29.630 0.00 0.00 37.38 2.52
241 242 9.959721 AGAATTTACTATGCTTCAGGTAAGAAA 57.040 29.630 0.00 0.00 37.38 2.52
243 244 9.740710 AATTTACTATGCTTCAGGTAAGAAAGT 57.259 29.630 0.00 0.00 37.38 2.66
244 245 9.740710 ATTTACTATGCTTCAGGTAAGAAAGTT 57.259 29.630 0.00 0.00 37.38 2.66
248 249 9.740710 ACTATGCTTCAGGTAAGAAAGTTAATT 57.259 29.630 0.00 0.00 37.38 1.40
251 252 8.232913 TGCTTCAGGTAAGAAAGTTAATTTGT 57.767 30.769 0.00 0.00 37.38 2.83
252 253 8.691797 TGCTTCAGGTAAGAAAGTTAATTTGTT 58.308 29.630 0.00 0.00 37.98 2.83
253 254 9.529325 GCTTCAGGTAAGAAAGTTAATTTGTTT 57.471 29.630 0.00 0.00 36.00 2.83
289 290 9.853177 AAGGACTAAATTACTAGCTTAATGCAT 57.147 29.630 0.00 0.00 45.94 3.96
290 291 9.277783 AGGACTAAATTACTAGCTTAATGCATG 57.722 33.333 0.00 0.00 45.94 4.06
291 292 8.507249 GGACTAAATTACTAGCTTAATGCATGG 58.493 37.037 0.00 0.00 45.94 3.66
292 293 9.273016 GACTAAATTACTAGCTTAATGCATGGA 57.727 33.333 0.00 0.00 45.94 3.41
293 294 9.627123 ACTAAATTACTAGCTTAATGCATGGAA 57.373 29.630 0.00 0.00 45.94 3.53
294 295 9.884465 CTAAATTACTAGCTTAATGCATGGAAC 57.116 33.333 0.00 0.00 45.94 3.62
295 296 8.525290 AAATTACTAGCTTAATGCATGGAACT 57.475 30.769 0.00 0.00 45.94 3.01
296 297 8.525290 AATTACTAGCTTAATGCATGGAACTT 57.475 30.769 0.00 0.00 45.94 2.66
297 298 9.627123 AATTACTAGCTTAATGCATGGAACTTA 57.373 29.630 0.00 0.00 45.94 2.24
298 299 9.799106 ATTACTAGCTTAATGCATGGAACTTAT 57.201 29.630 0.00 0.00 45.94 1.73
299 300 9.627123 TTACTAGCTTAATGCATGGAACTTATT 57.373 29.630 0.00 0.00 45.94 1.40
300 301 7.934457 ACTAGCTTAATGCATGGAACTTATTG 58.066 34.615 0.00 0.00 45.94 1.90
301 302 7.775093 ACTAGCTTAATGCATGGAACTTATTGA 59.225 33.333 0.00 0.00 45.94 2.57
302 303 7.035840 AGCTTAATGCATGGAACTTATTGAG 57.964 36.000 0.00 0.00 45.94 3.02
303 304 5.689068 GCTTAATGCATGGAACTTATTGAGC 59.311 40.000 0.00 0.00 42.31 4.26
304 305 6.460676 GCTTAATGCATGGAACTTATTGAGCT 60.461 38.462 0.00 0.00 42.31 4.09
305 306 4.913335 ATGCATGGAACTTATTGAGCTG 57.087 40.909 0.00 0.00 0.00 4.24
306 307 2.424601 TGCATGGAACTTATTGAGCTGC 59.575 45.455 0.00 0.00 0.00 5.25
307 308 2.424601 GCATGGAACTTATTGAGCTGCA 59.575 45.455 1.02 0.00 0.00 4.41
308 309 3.488721 GCATGGAACTTATTGAGCTGCAG 60.489 47.826 10.11 10.11 0.00 4.41
309 310 3.701205 TGGAACTTATTGAGCTGCAGA 57.299 42.857 20.43 0.00 0.00 4.26
310 311 3.338249 TGGAACTTATTGAGCTGCAGAC 58.662 45.455 20.43 11.18 0.00 3.51
311 312 3.244526 TGGAACTTATTGAGCTGCAGACA 60.245 43.478 20.43 13.89 0.00 3.41
312 313 3.944015 GGAACTTATTGAGCTGCAGACAT 59.056 43.478 20.43 1.27 0.00 3.06
313 314 4.201891 GGAACTTATTGAGCTGCAGACATG 60.202 45.833 20.43 9.47 0.00 3.21
314 315 3.276857 ACTTATTGAGCTGCAGACATGG 58.723 45.455 20.43 9.14 0.00 3.66
315 316 1.671979 TATTGAGCTGCAGACATGGC 58.328 50.000 20.43 0.47 0.00 4.40
316 317 0.323087 ATTGAGCTGCAGACATGGCA 60.323 50.000 20.43 0.00 39.32 4.92
317 318 0.323087 TTGAGCTGCAGACATGGCAT 60.323 50.000 20.43 0.00 41.06 4.40
318 319 1.029947 TGAGCTGCAGACATGGCATG 61.030 55.000 25.31 25.31 41.06 4.06
320 321 1.138883 GCTGCAGACATGGCATGTG 59.861 57.895 35.82 23.28 45.03 3.21
321 322 1.138883 CTGCAGACATGGCATGTGC 59.861 57.895 35.82 30.80 45.03 4.57
322 323 2.101575 GCAGACATGGCATGTGCG 59.898 61.111 35.82 25.45 45.03 5.34
323 324 2.693762 GCAGACATGGCATGTGCGT 61.694 57.895 35.82 17.93 45.03 5.24
324 325 1.368345 GCAGACATGGCATGTGCGTA 61.368 55.000 35.82 0.00 45.03 4.42
325 326 0.374758 CAGACATGGCATGTGCGTAC 59.625 55.000 35.82 21.01 45.03 3.67
326 327 0.036483 AGACATGGCATGTGCGTACA 60.036 50.000 35.82 9.28 45.03 2.90
328 329 2.158971 AGACATGGCATGTGCGTACATA 60.159 45.455 35.82 4.38 45.53 2.29
329 330 2.212652 ACATGGCATGTGCGTACATAG 58.787 47.619 30.96 13.82 45.53 2.23
330 331 2.158971 ACATGGCATGTGCGTACATAGA 60.159 45.455 30.96 6.36 45.53 1.98
331 332 2.223537 TGGCATGTGCGTACATAGAG 57.776 50.000 19.02 8.34 45.53 2.43
332 333 1.754226 TGGCATGTGCGTACATAGAGA 59.246 47.619 19.02 1.12 45.53 3.10
333 334 2.128035 GGCATGTGCGTACATAGAGAC 58.872 52.381 19.02 5.67 45.53 3.36
334 335 2.128035 GCATGTGCGTACATAGAGACC 58.872 52.381 19.02 0.67 45.53 3.85
335 336 2.223829 GCATGTGCGTACATAGAGACCT 60.224 50.000 19.02 0.00 45.53 3.85
336 337 3.375642 CATGTGCGTACATAGAGACCTG 58.624 50.000 19.02 1.99 45.53 4.00
337 338 1.134367 TGTGCGTACATAGAGACCTGC 59.866 52.381 0.82 0.00 0.00 4.85
338 339 1.405821 GTGCGTACATAGAGACCTGCT 59.594 52.381 0.00 0.00 0.00 4.24
339 340 1.405463 TGCGTACATAGAGACCTGCTG 59.595 52.381 0.00 0.00 0.00 4.41
340 341 1.866063 GCGTACATAGAGACCTGCTGC 60.866 57.143 0.00 0.00 0.00 5.25
341 342 1.598183 CGTACATAGAGACCTGCTGCG 60.598 57.143 0.00 0.00 0.00 5.18
342 343 1.032794 TACATAGAGACCTGCTGCGG 58.967 55.000 0.26 0.26 0.00 5.69
343 344 0.684479 ACATAGAGACCTGCTGCGGA 60.684 55.000 10.70 0.00 0.00 5.54
344 345 0.678395 CATAGAGACCTGCTGCGGAT 59.322 55.000 10.70 0.00 0.00 4.18
345 346 0.678395 ATAGAGACCTGCTGCGGATG 59.322 55.000 10.70 0.00 0.00 3.51
346 347 2.021068 TAGAGACCTGCTGCGGATGC 62.021 60.000 10.70 0.00 43.20 3.91
356 357 4.625800 GCGGATGCACCTCTTCTT 57.374 55.556 0.00 0.00 42.15 2.52
357 358 3.760693 GCGGATGCACCTCTTCTTA 57.239 52.632 0.00 0.00 42.15 2.10
358 359 1.291132 GCGGATGCACCTCTTCTTAC 58.709 55.000 0.00 0.00 42.15 2.34
359 360 1.405526 GCGGATGCACCTCTTCTTACA 60.406 52.381 0.00 0.00 42.15 2.41
360 361 2.544685 CGGATGCACCTCTTCTTACAG 58.455 52.381 0.00 0.00 36.31 2.74
361 362 2.739932 CGGATGCACCTCTTCTTACAGG 60.740 54.545 0.00 0.00 36.31 4.00
362 363 2.501723 GGATGCACCTCTTCTTACAGGA 59.498 50.000 0.00 0.00 33.52 3.86
363 364 3.526534 GATGCACCTCTTCTTACAGGAC 58.473 50.000 0.00 0.00 33.52 3.85
364 365 2.325484 TGCACCTCTTCTTACAGGACA 58.675 47.619 0.00 0.00 33.52 4.02
365 366 2.300152 TGCACCTCTTCTTACAGGACAG 59.700 50.000 0.00 0.00 33.52 3.51
366 367 2.354203 GCACCTCTTCTTACAGGACAGG 60.354 54.545 0.00 0.00 33.52 4.00
367 368 1.903183 ACCTCTTCTTACAGGACAGGC 59.097 52.381 0.00 0.00 33.52 4.85
368 369 2.183679 CCTCTTCTTACAGGACAGGCT 58.816 52.381 0.00 0.00 30.32 4.58
369 370 2.093764 CCTCTTCTTACAGGACAGGCTG 60.094 54.545 14.16 14.16 30.32 4.85
370 371 2.564947 CTCTTCTTACAGGACAGGCTGT 59.435 50.000 22.26 22.26 37.57 4.40
371 372 2.563179 TCTTCTTACAGGACAGGCTGTC 59.437 50.000 34.21 34.21 46.23 3.51
372 373 2.310779 TCTTACAGGACAGGCTGTCT 57.689 50.000 38.04 25.37 46.19 3.41
373 374 3.451402 TCTTACAGGACAGGCTGTCTA 57.549 47.619 38.04 24.42 46.19 2.59
374 375 3.090037 TCTTACAGGACAGGCTGTCTAC 58.910 50.000 38.04 26.22 46.19 2.59
375 376 1.460504 TACAGGACAGGCTGTCTACG 58.539 55.000 38.04 29.06 46.19 3.51
376 377 0.251209 ACAGGACAGGCTGTCTACGA 60.251 55.000 38.04 0.00 46.19 3.43
377 378 0.888619 CAGGACAGGCTGTCTACGAA 59.111 55.000 38.04 0.00 46.19 3.85
378 379 1.478510 CAGGACAGGCTGTCTACGAAT 59.521 52.381 38.04 19.36 46.19 3.34
379 380 2.093973 CAGGACAGGCTGTCTACGAATT 60.094 50.000 38.04 17.55 46.19 2.17
380 381 3.130516 CAGGACAGGCTGTCTACGAATTA 59.869 47.826 38.04 0.00 46.19 1.40
381 382 3.961408 AGGACAGGCTGTCTACGAATTAT 59.039 43.478 38.04 15.88 46.19 1.28
382 383 4.038162 AGGACAGGCTGTCTACGAATTATC 59.962 45.833 38.04 21.81 46.19 1.75
383 384 4.038162 GGACAGGCTGTCTACGAATTATCT 59.962 45.833 38.04 5.91 46.19 1.98
384 385 5.452077 GGACAGGCTGTCTACGAATTATCTT 60.452 44.000 38.04 5.23 46.19 2.40
385 386 5.352284 ACAGGCTGTCTACGAATTATCTTG 58.648 41.667 15.88 0.00 0.00 3.02
386 387 5.127194 ACAGGCTGTCTACGAATTATCTTGA 59.873 40.000 15.88 0.00 0.00 3.02
387 388 5.689514 CAGGCTGTCTACGAATTATCTTGAG 59.310 44.000 6.28 0.00 0.00 3.02
388 389 4.446051 GGCTGTCTACGAATTATCTTGAGC 59.554 45.833 0.00 0.00 0.00 4.26
389 390 5.285651 GCTGTCTACGAATTATCTTGAGCT 58.714 41.667 0.00 0.00 0.00 4.09
390 391 5.751028 GCTGTCTACGAATTATCTTGAGCTT 59.249 40.000 0.00 0.00 0.00 3.74
391 392 6.074569 GCTGTCTACGAATTATCTTGAGCTTC 60.075 42.308 0.00 0.00 0.00 3.86
392 393 6.863275 TGTCTACGAATTATCTTGAGCTTCA 58.137 36.000 0.00 0.00 0.00 3.02
393 394 7.320399 TGTCTACGAATTATCTTGAGCTTCAA 58.680 34.615 0.00 0.00 34.79 2.69
394 395 7.981789 TGTCTACGAATTATCTTGAGCTTCAAT 59.018 33.333 0.00 0.00 35.59 2.57
395 396 8.821894 GTCTACGAATTATCTTGAGCTTCAATT 58.178 33.333 0.00 0.00 35.59 2.32
396 397 9.383519 TCTACGAATTATCTTGAGCTTCAATTT 57.616 29.630 0.00 0.00 35.59 1.82
397 398 9.643652 CTACGAATTATCTTGAGCTTCAATTTC 57.356 33.333 0.00 0.00 35.59 2.17
398 399 7.475840 ACGAATTATCTTGAGCTTCAATTTCC 58.524 34.615 0.00 0.00 35.59 3.13
399 400 7.121168 ACGAATTATCTTGAGCTTCAATTTCCA 59.879 33.333 0.00 0.00 35.59 3.53
400 401 8.133627 CGAATTATCTTGAGCTTCAATTTCCAT 58.866 33.333 0.00 0.00 35.59 3.41
409 410 8.909708 TGAGCTTCAATTTCCATAATAAAACG 57.090 30.769 0.00 0.00 0.00 3.60
410 411 8.519526 TGAGCTTCAATTTCCATAATAAAACGT 58.480 29.630 0.00 0.00 0.00 3.99
411 412 8.687824 AGCTTCAATTTCCATAATAAAACGTG 57.312 30.769 0.00 0.00 0.00 4.49
412 413 8.303876 AGCTTCAATTTCCATAATAAAACGTGT 58.696 29.630 0.00 0.00 0.00 4.49
413 414 8.372521 GCTTCAATTTCCATAATAAAACGTGTG 58.627 33.333 0.00 0.00 0.00 3.82
414 415 9.405587 CTTCAATTTCCATAATAAAACGTGTGT 57.594 29.630 0.00 0.00 0.00 3.72
415 416 9.751542 TTCAATTTCCATAATAAAACGTGTGTT 57.248 25.926 0.00 0.00 40.98 3.32
431 432 9.535878 AAACGTGTGTTTTTATTTATCATGGTT 57.464 25.926 0.00 0.00 45.89 3.67
432 433 9.535878 AACGTGTGTTTTTATTTATCATGGTTT 57.464 25.926 0.00 0.00 33.53 3.27
433 434 9.187455 ACGTGTGTTTTTATTTATCATGGTTTC 57.813 29.630 0.00 0.00 0.00 2.78
434 435 9.405587 CGTGTGTTTTTATTTATCATGGTTTCT 57.594 29.630 0.00 0.00 0.00 2.52
436 437 9.921637 TGTGTTTTTATTTATCATGGTTTCTCC 57.078 29.630 0.00 0.00 0.00 3.71
439 440 9.803315 GTTTTTATTTATCATGGTTTCTCCTCC 57.197 33.333 0.00 0.00 37.07 4.30
440 441 9.768215 TTTTTATTTATCATGGTTTCTCCTCCT 57.232 29.630 0.00 0.00 37.07 3.69
442 443 9.847224 TTTATTTATCATGGTTTCTCCTCCTAC 57.153 33.333 0.00 0.00 37.07 3.18
443 444 6.884472 TTTATCATGGTTTCTCCTCCTACA 57.116 37.500 0.00 0.00 37.07 2.74
444 445 7.451731 TTTATCATGGTTTCTCCTCCTACAT 57.548 36.000 0.00 0.00 37.07 2.29
445 446 4.760530 TCATGGTTTCTCCTCCTACATG 57.239 45.455 0.00 0.00 36.48 3.21
446 447 4.361783 TCATGGTTTCTCCTCCTACATGA 58.638 43.478 0.00 0.00 40.37 3.07
447 448 4.162320 TCATGGTTTCTCCTCCTACATGAC 59.838 45.833 0.00 0.00 38.50 3.06
448 449 2.838202 TGGTTTCTCCTCCTACATGACC 59.162 50.000 0.00 0.00 37.07 4.02
449 450 2.838202 GGTTTCTCCTCCTACATGACCA 59.162 50.000 0.00 0.00 0.00 4.02
450 451 3.263425 GGTTTCTCCTCCTACATGACCAA 59.737 47.826 0.00 0.00 0.00 3.67
451 452 4.263331 GGTTTCTCCTCCTACATGACCAAA 60.263 45.833 0.00 0.00 0.00 3.28
452 453 5.313712 GTTTCTCCTCCTACATGACCAAAA 58.686 41.667 0.00 0.00 0.00 2.44
453 454 5.779241 TTCTCCTCCTACATGACCAAAAT 57.221 39.130 0.00 0.00 0.00 1.82
454 455 5.779241 TCTCCTCCTACATGACCAAAATT 57.221 39.130 0.00 0.00 0.00 1.82
455 456 6.139679 TCTCCTCCTACATGACCAAAATTT 57.860 37.500 0.00 0.00 0.00 1.82
456 457 6.180472 TCTCCTCCTACATGACCAAAATTTC 58.820 40.000 0.00 0.00 0.00 2.17
457 458 5.261216 TCCTCCTACATGACCAAAATTTCC 58.739 41.667 0.00 0.00 0.00 3.13
458 459 5.016173 CCTCCTACATGACCAAAATTTCCA 58.984 41.667 0.00 0.00 0.00 3.53
459 460 5.126061 CCTCCTACATGACCAAAATTTCCAG 59.874 44.000 0.00 0.00 0.00 3.86
460 461 5.886609 TCCTACATGACCAAAATTTCCAGA 58.113 37.500 0.00 0.00 0.00 3.86
461 462 6.493166 TCCTACATGACCAAAATTTCCAGAT 58.507 36.000 0.00 0.00 0.00 2.90
462 463 6.377996 TCCTACATGACCAAAATTTCCAGATG 59.622 38.462 0.00 0.00 0.00 2.90
463 464 6.153340 CCTACATGACCAAAATTTCCAGATGT 59.847 38.462 0.00 0.00 0.00 3.06
464 465 6.423776 ACATGACCAAAATTTCCAGATGTT 57.576 33.333 0.00 0.00 0.00 2.71
465 466 6.225318 ACATGACCAAAATTTCCAGATGTTG 58.775 36.000 0.00 0.00 0.00 3.33
576 577 1.881973 CTGTTGGCCCGATGGAATATG 59.118 52.381 0.00 0.00 0.00 1.78
1098 1161 1.530013 GGGTGCAGCACATGAAGCTT 61.530 55.000 26.78 0.00 41.14 3.74
2818 2885 8.543774 ACACTTGGATCTACTTTATGTCATCTT 58.456 33.333 0.00 0.00 0.00 2.40
2955 3022 1.608590 CGTGGTTTCCTTGCTGAACAT 59.391 47.619 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 8.851416 CGTACATAACAACAACAGTTTTTCAAA 58.149 29.630 0.00 0.00 0.00 2.69
7 8 7.008447 GCGTACATAACAACAACAGTTTTTCAA 59.992 33.333 0.00 0.00 0.00 2.69
8 9 6.469595 GCGTACATAACAACAACAGTTTTTCA 59.530 34.615 0.00 0.00 0.00 2.69
9 10 6.469595 TGCGTACATAACAACAACAGTTTTTC 59.530 34.615 0.00 0.00 0.00 2.29
10 11 6.323266 TGCGTACATAACAACAACAGTTTTT 58.677 32.000 0.00 0.00 0.00 1.94
11 12 5.881447 TGCGTACATAACAACAACAGTTTT 58.119 33.333 0.00 0.00 0.00 2.43
12 13 5.487153 TGCGTACATAACAACAACAGTTT 57.513 34.783 0.00 0.00 0.00 2.66
13 14 5.237561 TCATGCGTACATAACAACAACAGTT 59.762 36.000 0.00 0.00 33.67 3.16
14 15 4.752604 TCATGCGTACATAACAACAACAGT 59.247 37.500 0.00 0.00 33.67 3.55
15 16 5.276240 TCATGCGTACATAACAACAACAG 57.724 39.130 0.00 0.00 33.67 3.16
16 17 5.871465 ATCATGCGTACATAACAACAACA 57.129 34.783 0.00 0.00 33.67 3.33
17 18 6.767080 TGTATCATGCGTACATAACAACAAC 58.233 36.000 6.67 0.00 33.67 3.32
18 19 6.592220 ACTGTATCATGCGTACATAACAACAA 59.408 34.615 10.08 0.00 33.67 2.83
19 20 6.103330 ACTGTATCATGCGTACATAACAACA 58.897 36.000 10.08 0.00 33.67 3.33
20 21 6.583912 ACTGTATCATGCGTACATAACAAC 57.416 37.500 10.08 0.00 33.67 3.32
21 22 7.485810 AGTACTGTATCATGCGTACATAACAA 58.514 34.615 10.08 0.00 35.79 2.83
22 23 7.034685 AGTACTGTATCATGCGTACATAACA 57.965 36.000 10.08 0.00 35.79 2.41
23 24 8.501580 TCTAGTACTGTATCATGCGTACATAAC 58.498 37.037 5.39 10.67 35.79 1.89
24 25 8.611654 TCTAGTACTGTATCATGCGTACATAA 57.388 34.615 5.39 1.81 35.79 1.90
25 26 7.876582 ACTCTAGTACTGTATCATGCGTACATA 59.123 37.037 5.39 4.72 35.79 2.29
26 27 6.711194 ACTCTAGTACTGTATCATGCGTACAT 59.289 38.462 5.39 5.40 35.79 2.29
27 28 6.053650 ACTCTAGTACTGTATCATGCGTACA 58.946 40.000 5.39 9.48 35.79 2.90
28 29 6.542574 ACTCTAGTACTGTATCATGCGTAC 57.457 41.667 5.39 0.00 34.06 3.67
29 30 6.541278 ACAACTCTAGTACTGTATCATGCGTA 59.459 38.462 5.39 0.00 0.00 4.42
30 31 5.357314 ACAACTCTAGTACTGTATCATGCGT 59.643 40.000 5.39 0.00 0.00 5.24
31 32 5.822278 ACAACTCTAGTACTGTATCATGCG 58.178 41.667 5.39 0.00 0.00 4.73
32 33 7.327275 GCATACAACTCTAGTACTGTATCATGC 59.673 40.741 5.39 7.06 32.59 4.06
33 34 8.352942 TGCATACAACTCTAGTACTGTATCATG 58.647 37.037 5.39 0.52 32.59 3.07
34 35 8.465273 TGCATACAACTCTAGTACTGTATCAT 57.535 34.615 5.39 0.00 32.59 2.45
35 36 7.013369 CCTGCATACAACTCTAGTACTGTATCA 59.987 40.741 5.39 4.72 32.59 2.15
36 37 7.228906 TCCTGCATACAACTCTAGTACTGTATC 59.771 40.741 5.39 0.80 32.59 2.24
37 38 7.061054 TCCTGCATACAACTCTAGTACTGTAT 58.939 38.462 5.39 1.50 34.21 2.29
38 39 6.420638 TCCTGCATACAACTCTAGTACTGTA 58.579 40.000 5.39 0.00 0.00 2.74
39 40 5.262009 TCCTGCATACAACTCTAGTACTGT 58.738 41.667 5.39 0.00 0.00 3.55
40 41 5.836821 TCCTGCATACAACTCTAGTACTG 57.163 43.478 5.39 0.00 0.00 2.74
41 42 9.456147 CTATATCCTGCATACAACTCTAGTACT 57.544 37.037 0.00 0.00 0.00 2.73
42 43 9.233649 ACTATATCCTGCATACAACTCTAGTAC 57.766 37.037 0.00 0.00 0.00 2.73
44 45 9.233649 GTACTATATCCTGCATACAACTCTAGT 57.766 37.037 0.00 0.00 0.00 2.57
45 46 9.456147 AGTACTATATCCTGCATACAACTCTAG 57.544 37.037 0.00 0.00 0.00 2.43
47 48 9.456147 CTAGTACTATATCCTGCATACAACTCT 57.544 37.037 2.33 0.00 0.00 3.24
48 49 9.451002 TCTAGTACTATATCCTGCATACAACTC 57.549 37.037 2.33 0.00 0.00 3.01
49 50 9.456147 CTCTAGTACTATATCCTGCATACAACT 57.544 37.037 2.33 0.00 0.00 3.16
50 51 9.233649 ACTCTAGTACTATATCCTGCATACAAC 57.766 37.037 2.33 0.00 0.00 3.32
51 52 9.809395 AACTCTAGTACTATATCCTGCATACAA 57.191 33.333 2.33 0.00 0.00 2.41
52 53 9.232473 CAACTCTAGTACTATATCCTGCATACA 57.768 37.037 2.33 0.00 0.00 2.29
53 54 8.679100 CCAACTCTAGTACTATATCCTGCATAC 58.321 40.741 2.33 0.00 0.00 2.39
54 55 8.612145 TCCAACTCTAGTACTATATCCTGCATA 58.388 37.037 2.33 0.00 0.00 3.14
55 56 7.471041 TCCAACTCTAGTACTATATCCTGCAT 58.529 38.462 2.33 0.00 0.00 3.96
56 57 6.849151 TCCAACTCTAGTACTATATCCTGCA 58.151 40.000 2.33 0.00 0.00 4.41
57 58 7.762588 TTCCAACTCTAGTACTATATCCTGC 57.237 40.000 2.33 0.00 0.00 4.85
63 64 9.144298 CCCTGAAATTCCAACTCTAGTACTATA 57.856 37.037 2.33 0.00 0.00 1.31
64 65 7.419172 GCCCTGAAATTCCAACTCTAGTACTAT 60.419 40.741 2.33 0.00 0.00 2.12
65 66 6.127140 GCCCTGAAATTCCAACTCTAGTACTA 60.127 42.308 1.89 1.89 0.00 1.82
66 67 5.338463 GCCCTGAAATTCCAACTCTAGTACT 60.338 44.000 0.00 0.00 0.00 2.73
67 68 4.876679 GCCCTGAAATTCCAACTCTAGTAC 59.123 45.833 0.00 0.00 0.00 2.73
68 69 4.534500 TGCCCTGAAATTCCAACTCTAGTA 59.466 41.667 0.00 0.00 0.00 1.82
69 70 3.330701 TGCCCTGAAATTCCAACTCTAGT 59.669 43.478 0.00 0.00 0.00 2.57
70 71 3.955471 TGCCCTGAAATTCCAACTCTAG 58.045 45.455 0.00 0.00 0.00 2.43
71 72 4.526970 GATGCCCTGAAATTCCAACTCTA 58.473 43.478 0.00 0.00 0.00 2.43
72 73 2.978156 TGCCCTGAAATTCCAACTCT 57.022 45.000 0.00 0.00 0.00 3.24
73 74 2.428530 GGATGCCCTGAAATTCCAACTC 59.571 50.000 0.00 0.00 0.00 3.01
74 75 2.225343 TGGATGCCCTGAAATTCCAACT 60.225 45.455 0.00 0.00 33.66 3.16
75 76 2.178580 TGGATGCCCTGAAATTCCAAC 58.821 47.619 0.00 0.00 33.66 3.77
76 77 2.619697 TGGATGCCCTGAAATTCCAA 57.380 45.000 0.00 0.00 33.66 3.53
77 78 2.619697 TTGGATGCCCTGAAATTCCA 57.380 45.000 0.00 0.00 34.74 3.53
78 79 3.979101 TTTTGGATGCCCTGAAATTCC 57.021 42.857 0.00 0.00 0.00 3.01
79 80 5.151297 TCTTTTTGGATGCCCTGAAATTC 57.849 39.130 0.00 0.00 0.00 2.17
80 81 5.072193 AGTTCTTTTTGGATGCCCTGAAATT 59.928 36.000 0.00 0.00 0.00 1.82
81 82 4.594491 AGTTCTTTTTGGATGCCCTGAAAT 59.406 37.500 0.00 0.00 0.00 2.17
82 83 3.966665 AGTTCTTTTTGGATGCCCTGAAA 59.033 39.130 0.00 0.00 0.00 2.69
83 84 3.575805 AGTTCTTTTTGGATGCCCTGAA 58.424 40.909 0.00 0.00 0.00 3.02
84 85 3.243359 AGTTCTTTTTGGATGCCCTGA 57.757 42.857 0.00 0.00 0.00 3.86
85 86 4.524328 AGTAAGTTCTTTTTGGATGCCCTG 59.476 41.667 0.00 0.00 0.00 4.45
86 87 4.740902 AGTAAGTTCTTTTTGGATGCCCT 58.259 39.130 0.00 0.00 0.00 5.19
87 88 6.564328 CATAGTAAGTTCTTTTTGGATGCCC 58.436 40.000 0.00 0.00 0.00 5.36
88 89 6.036470 GCATAGTAAGTTCTTTTTGGATGCC 58.964 40.000 0.00 0.00 31.89 4.40
89 90 6.856895 AGCATAGTAAGTTCTTTTTGGATGC 58.143 36.000 0.00 0.00 36.95 3.91
90 91 8.514594 TGAAGCATAGTAAGTTCTTTTTGGATG 58.485 33.333 0.00 0.00 0.00 3.51
91 92 8.635765 TGAAGCATAGTAAGTTCTTTTTGGAT 57.364 30.769 0.00 0.00 0.00 3.41
92 93 7.308589 GCTGAAGCATAGTAAGTTCTTTTTGGA 60.309 37.037 0.00 0.00 41.59 3.53
93 94 6.803807 GCTGAAGCATAGTAAGTTCTTTTTGG 59.196 38.462 0.00 0.00 41.59 3.28
94 95 6.803807 GGCTGAAGCATAGTAAGTTCTTTTTG 59.196 38.462 4.43 0.00 44.36 2.44
95 96 6.071896 GGGCTGAAGCATAGTAAGTTCTTTTT 60.072 38.462 4.43 0.00 44.36 1.94
96 97 5.416013 GGGCTGAAGCATAGTAAGTTCTTTT 59.584 40.000 4.43 0.00 44.36 2.27
97 98 4.944317 GGGCTGAAGCATAGTAAGTTCTTT 59.056 41.667 4.43 0.00 44.36 2.52
98 99 4.019321 TGGGCTGAAGCATAGTAAGTTCTT 60.019 41.667 4.43 0.00 44.36 2.52
99 100 3.519510 TGGGCTGAAGCATAGTAAGTTCT 59.480 43.478 4.43 0.00 44.36 3.01
100 101 3.873910 TGGGCTGAAGCATAGTAAGTTC 58.126 45.455 4.43 0.00 44.36 3.01
101 102 4.202441 CATGGGCTGAAGCATAGTAAGTT 58.798 43.478 4.43 0.00 44.36 2.66
102 103 3.200825 ACATGGGCTGAAGCATAGTAAGT 59.799 43.478 4.43 0.00 44.36 2.24
103 104 3.813443 ACATGGGCTGAAGCATAGTAAG 58.187 45.455 4.43 0.00 44.36 2.34
104 105 3.931907 ACATGGGCTGAAGCATAGTAA 57.068 42.857 4.43 0.00 44.36 2.24
105 106 3.931907 AACATGGGCTGAAGCATAGTA 57.068 42.857 4.43 0.00 44.36 1.82
106 107 2.814805 AACATGGGCTGAAGCATAGT 57.185 45.000 4.43 0.00 44.36 2.12
107 108 3.698040 AGAAAACATGGGCTGAAGCATAG 59.302 43.478 4.43 0.00 44.36 2.23
108 109 3.700538 AGAAAACATGGGCTGAAGCATA 58.299 40.909 4.43 0.00 44.36 3.14
109 110 2.532843 AGAAAACATGGGCTGAAGCAT 58.467 42.857 4.43 0.00 44.36 3.79
110 111 1.999648 AGAAAACATGGGCTGAAGCA 58.000 45.000 4.43 0.00 44.36 3.91
111 112 2.164422 GGTAGAAAACATGGGCTGAAGC 59.836 50.000 0.00 0.00 41.14 3.86
112 113 3.420893 TGGTAGAAAACATGGGCTGAAG 58.579 45.455 0.00 0.00 0.00 3.02
113 114 3.517296 TGGTAGAAAACATGGGCTGAA 57.483 42.857 0.00 0.00 0.00 3.02
114 115 3.737559 ATGGTAGAAAACATGGGCTGA 57.262 42.857 0.00 0.00 0.00 4.26
115 116 3.676873 GCAATGGTAGAAAACATGGGCTG 60.677 47.826 0.00 0.00 0.00 4.85
116 117 2.497273 GCAATGGTAGAAAACATGGGCT 59.503 45.455 0.00 0.00 0.00 5.19
117 118 2.497273 AGCAATGGTAGAAAACATGGGC 59.503 45.455 0.00 0.00 0.00 5.36
118 119 4.497300 CAAGCAATGGTAGAAAACATGGG 58.503 43.478 0.00 0.00 0.00 4.00
119 120 3.928375 GCAAGCAATGGTAGAAAACATGG 59.072 43.478 0.00 0.00 0.00 3.66
120 121 4.813027 AGCAAGCAATGGTAGAAAACATG 58.187 39.130 0.00 0.00 38.18 3.21
121 122 5.473066 AAGCAAGCAATGGTAGAAAACAT 57.527 34.783 0.00 0.00 39.29 2.71
122 123 4.935352 AAGCAAGCAATGGTAGAAAACA 57.065 36.364 0.00 0.00 39.29 2.83
123 124 7.889589 ATAAAAGCAAGCAATGGTAGAAAAC 57.110 32.000 0.00 0.00 39.29 2.43
124 125 8.772705 CAAATAAAAGCAAGCAATGGTAGAAAA 58.227 29.630 0.00 0.00 39.29 2.29
125 126 8.147058 TCAAATAAAAGCAAGCAATGGTAGAAA 58.853 29.630 0.00 0.00 39.29 2.52
126 127 7.665690 TCAAATAAAAGCAAGCAATGGTAGAA 58.334 30.769 0.00 0.00 39.29 2.10
127 128 7.225784 TCAAATAAAAGCAAGCAATGGTAGA 57.774 32.000 0.00 0.00 39.29 2.59
128 129 7.887996 TTCAAATAAAAGCAAGCAATGGTAG 57.112 32.000 0.00 0.00 39.29 3.18
129 130 8.668510 TTTTCAAATAAAAGCAAGCAATGGTA 57.331 26.923 0.00 0.00 39.29 3.25
130 131 7.565323 TTTTCAAATAAAAGCAAGCAATGGT 57.435 28.000 0.00 0.00 42.88 3.55
131 132 8.130469 AGTTTTTCAAATAAAAGCAAGCAATGG 58.870 29.630 0.00 0.00 0.00 3.16
132 133 8.949953 CAGTTTTTCAAATAAAAGCAAGCAATG 58.050 29.630 0.00 0.00 0.00 2.82
133 134 8.676401 ACAGTTTTTCAAATAAAAGCAAGCAAT 58.324 25.926 0.00 0.00 0.00 3.56
134 135 8.038492 ACAGTTTTTCAAATAAAAGCAAGCAA 57.962 26.923 0.00 0.00 0.00 3.91
135 136 7.608308 ACAGTTTTTCAAATAAAAGCAAGCA 57.392 28.000 0.00 0.00 0.00 3.91
136 137 7.962373 ACAACAGTTTTTCAAATAAAAGCAAGC 59.038 29.630 0.00 0.00 0.00 4.01
137 138 9.824534 AACAACAGTTTTTCAAATAAAAGCAAG 57.175 25.926 0.00 0.00 0.00 4.01
138 139 9.604626 CAACAACAGTTTTTCAAATAAAAGCAA 57.395 25.926 0.00 0.00 0.00 3.91
139 140 8.778358 ACAACAACAGTTTTTCAAATAAAAGCA 58.222 25.926 0.00 0.00 0.00 3.91
140 141 9.605955 AACAACAACAGTTTTTCAAATAAAAGC 57.394 25.926 0.00 0.00 0.00 3.51
148 149 8.812329 GCATACATAACAACAACAGTTTTTCAA 58.188 29.630 0.00 0.00 0.00 2.69
149 150 7.976175 TGCATACATAACAACAACAGTTTTTCA 59.024 29.630 0.00 0.00 0.00 2.69
150 151 8.346476 TGCATACATAACAACAACAGTTTTTC 57.654 30.769 0.00 0.00 0.00 2.29
151 152 8.709386 TTGCATACATAACAACAACAGTTTTT 57.291 26.923 0.00 0.00 0.00 1.94
152 153 8.194104 TCTTGCATACATAACAACAACAGTTTT 58.806 29.630 0.00 0.00 0.00 2.43
153 154 7.711846 TCTTGCATACATAACAACAACAGTTT 58.288 30.769 0.00 0.00 0.00 2.66
154 155 7.270757 TCTTGCATACATAACAACAACAGTT 57.729 32.000 0.00 0.00 0.00 3.16
155 156 6.875948 TCTTGCATACATAACAACAACAGT 57.124 33.333 0.00 0.00 0.00 3.55
156 157 8.450180 TGTATCTTGCATACATAACAACAACAG 58.550 33.333 0.00 0.00 30.34 3.16
157 158 8.329203 TGTATCTTGCATACATAACAACAACA 57.671 30.769 0.00 0.00 30.34 3.33
158 159 9.787532 ATTGTATCTTGCATACATAACAACAAC 57.212 29.630 0.00 0.00 34.83 3.32
168 169 9.750125 CAACTCTAGTATTGTATCTTGCATACA 57.250 33.333 0.00 0.00 33.16 2.29
169 170 9.197694 CCAACTCTAGTATTGTATCTTGCATAC 57.802 37.037 0.00 0.00 0.00 2.39
170 171 9.143155 TCCAACTCTAGTATTGTATCTTGCATA 57.857 33.333 0.00 0.00 0.00 3.14
171 172 8.023021 TCCAACTCTAGTATTGTATCTTGCAT 57.977 34.615 0.00 0.00 0.00 3.96
172 173 7.418337 TCCAACTCTAGTATTGTATCTTGCA 57.582 36.000 7.60 0.00 0.00 4.08
173 174 8.894768 ATTCCAACTCTAGTATTGTATCTTGC 57.105 34.615 7.60 0.00 0.00 4.01
178 179 9.838339 CCTGAAATTCCAACTCTAGTATTGTAT 57.162 33.333 7.60 0.59 0.00 2.29
179 180 8.265055 CCCTGAAATTCCAACTCTAGTATTGTA 58.735 37.037 7.60 0.00 0.00 2.41
180 181 7.112779 CCCTGAAATTCCAACTCTAGTATTGT 58.887 38.462 7.60 0.00 0.00 2.71
181 182 6.038714 GCCCTGAAATTCCAACTCTAGTATTG 59.961 42.308 0.00 0.00 0.00 1.90
182 183 6.122964 GCCCTGAAATTCCAACTCTAGTATT 58.877 40.000 0.00 0.00 0.00 1.89
183 184 5.191722 TGCCCTGAAATTCCAACTCTAGTAT 59.808 40.000 0.00 0.00 0.00 2.12
184 185 4.534500 TGCCCTGAAATTCCAACTCTAGTA 59.466 41.667 0.00 0.00 0.00 1.82
185 186 3.330701 TGCCCTGAAATTCCAACTCTAGT 59.669 43.478 0.00 0.00 0.00 2.57
186 187 3.955471 TGCCCTGAAATTCCAACTCTAG 58.045 45.455 0.00 0.00 0.00 2.43
187 188 4.526970 GATGCCCTGAAATTCCAACTCTA 58.473 43.478 0.00 0.00 0.00 2.43
188 189 2.978156 TGCCCTGAAATTCCAACTCT 57.022 45.000 0.00 0.00 0.00 3.24
189 190 2.428530 GGATGCCCTGAAATTCCAACTC 59.571 50.000 0.00 0.00 0.00 3.01
190 191 2.225343 TGGATGCCCTGAAATTCCAACT 60.225 45.455 0.00 0.00 33.66 3.16
191 192 2.178580 TGGATGCCCTGAAATTCCAAC 58.821 47.619 0.00 0.00 33.66 3.77
192 193 2.619697 TGGATGCCCTGAAATTCCAA 57.380 45.000 0.00 0.00 33.66 3.53
193 194 2.619697 TTGGATGCCCTGAAATTCCA 57.380 45.000 0.00 0.00 34.74 3.53
194 195 3.979101 TTTTGGATGCCCTGAAATTCC 57.021 42.857 0.00 0.00 0.00 3.01
195 196 5.151297 TCTTTTTGGATGCCCTGAAATTC 57.849 39.130 0.00 0.00 0.00 2.17
196 197 5.565455 TTCTTTTTGGATGCCCTGAAATT 57.435 34.783 0.00 0.00 0.00 1.82
197 198 5.767277 ATTCTTTTTGGATGCCCTGAAAT 57.233 34.783 0.00 0.00 0.00 2.17
198 199 5.565455 AATTCTTTTTGGATGCCCTGAAA 57.435 34.783 0.00 0.00 0.00 2.69
199 200 5.565455 AAATTCTTTTTGGATGCCCTGAA 57.435 34.783 0.00 0.00 0.00 3.02
200 201 5.779771 AGTAAATTCTTTTTGGATGCCCTGA 59.220 36.000 0.00 0.00 0.00 3.86
201 202 6.041423 AGTAAATTCTTTTTGGATGCCCTG 57.959 37.500 0.00 0.00 0.00 4.45
202 203 7.633553 GCATAGTAAATTCTTTTTGGATGCCCT 60.634 37.037 0.00 0.00 31.85 5.19
203 204 6.479990 GCATAGTAAATTCTTTTTGGATGCCC 59.520 38.462 0.00 0.00 31.85 5.36
204 205 7.267857 AGCATAGTAAATTCTTTTTGGATGCC 58.732 34.615 0.00 0.00 34.99 4.40
205 206 8.707938 AAGCATAGTAAATTCTTTTTGGATGC 57.292 30.769 0.00 0.00 34.83 3.91
206 207 9.859427 TGAAGCATAGTAAATTCTTTTTGGATG 57.141 29.630 0.00 0.00 0.00 3.51
208 209 8.522830 CCTGAAGCATAGTAAATTCTTTTTGGA 58.477 33.333 0.00 0.00 0.00 3.53
209 210 8.306761 ACCTGAAGCATAGTAAATTCTTTTTGG 58.693 33.333 0.00 0.00 0.00 3.28
213 214 9.959721 TCTTACCTGAAGCATAGTAAATTCTTT 57.040 29.630 0.00 0.00 34.87 2.52
214 215 9.959721 TTCTTACCTGAAGCATAGTAAATTCTT 57.040 29.630 0.00 0.00 34.87 2.52
215 216 9.959721 TTTCTTACCTGAAGCATAGTAAATTCT 57.040 29.630 0.00 0.00 34.87 2.40
217 218 9.740710 ACTTTCTTACCTGAAGCATAGTAAATT 57.259 29.630 0.00 0.00 34.87 1.82
218 219 9.740710 AACTTTCTTACCTGAAGCATAGTAAAT 57.259 29.630 0.00 0.00 34.87 1.40
222 223 9.740710 AATTAACTTTCTTACCTGAAGCATAGT 57.259 29.630 0.00 0.00 34.87 2.12
225 226 8.860088 ACAAATTAACTTTCTTACCTGAAGCAT 58.140 29.630 0.00 0.00 34.87 3.79
226 227 8.232913 ACAAATTAACTTTCTTACCTGAAGCA 57.767 30.769 0.00 0.00 34.87 3.91
227 228 9.529325 AAACAAATTAACTTTCTTACCTGAAGC 57.471 29.630 0.00 0.00 34.87 3.86
263 264 9.853177 ATGCATTAAGCTAGTAATTTAGTCCTT 57.147 29.630 0.00 0.00 45.94 3.36
264 265 9.277783 CATGCATTAAGCTAGTAATTTAGTCCT 57.722 33.333 0.00 0.00 45.94 3.85
265 266 8.507249 CCATGCATTAAGCTAGTAATTTAGTCC 58.493 37.037 0.00 0.00 45.94 3.85
266 267 9.273016 TCCATGCATTAAGCTAGTAATTTAGTC 57.727 33.333 0.00 0.00 45.94 2.59
267 268 9.627123 TTCCATGCATTAAGCTAGTAATTTAGT 57.373 29.630 0.00 0.00 45.94 2.24
268 269 9.884465 GTTCCATGCATTAAGCTAGTAATTTAG 57.116 33.333 0.00 0.00 45.94 1.85
269 270 9.627123 AGTTCCATGCATTAAGCTAGTAATTTA 57.373 29.630 0.00 0.00 45.94 1.40
270 271 8.525290 AGTTCCATGCATTAAGCTAGTAATTT 57.475 30.769 0.00 0.00 45.94 1.82
271 272 8.525290 AAGTTCCATGCATTAAGCTAGTAATT 57.475 30.769 0.00 0.00 45.94 1.40
272 273 9.799106 ATAAGTTCCATGCATTAAGCTAGTAAT 57.201 29.630 0.00 0.00 45.94 1.89
273 274 9.627123 AATAAGTTCCATGCATTAAGCTAGTAA 57.373 29.630 0.00 0.00 45.94 2.24
274 275 9.056005 CAATAAGTTCCATGCATTAAGCTAGTA 57.944 33.333 0.00 0.00 45.94 1.82
275 276 7.775093 TCAATAAGTTCCATGCATTAAGCTAGT 59.225 33.333 0.00 0.00 45.94 2.57
276 277 8.158169 TCAATAAGTTCCATGCATTAAGCTAG 57.842 34.615 0.00 0.00 45.94 3.42
277 278 7.255242 GCTCAATAAGTTCCATGCATTAAGCTA 60.255 37.037 0.00 0.00 45.94 3.32
278 279 6.460676 GCTCAATAAGTTCCATGCATTAAGCT 60.461 38.462 0.00 0.00 45.94 3.74
279 280 5.689068 GCTCAATAAGTTCCATGCATTAAGC 59.311 40.000 0.00 0.00 45.96 3.09
280 281 6.916387 CAGCTCAATAAGTTCCATGCATTAAG 59.084 38.462 0.00 0.00 0.00 1.85
281 282 6.681120 GCAGCTCAATAAGTTCCATGCATTAA 60.681 38.462 0.00 0.00 0.00 1.40
282 283 5.221106 GCAGCTCAATAAGTTCCATGCATTA 60.221 40.000 0.00 0.00 0.00 1.90
283 284 4.441079 GCAGCTCAATAAGTTCCATGCATT 60.441 41.667 0.00 0.00 0.00 3.56
284 285 3.067742 GCAGCTCAATAAGTTCCATGCAT 59.932 43.478 0.00 0.00 0.00 3.96
285 286 2.424601 GCAGCTCAATAAGTTCCATGCA 59.575 45.455 0.00 0.00 0.00 3.96
286 287 2.424601 TGCAGCTCAATAAGTTCCATGC 59.575 45.455 0.00 0.00 0.00 4.06
287 288 3.943381 TCTGCAGCTCAATAAGTTCCATG 59.057 43.478 9.47 0.00 0.00 3.66
288 289 3.944015 GTCTGCAGCTCAATAAGTTCCAT 59.056 43.478 9.47 0.00 0.00 3.41
289 290 3.244526 TGTCTGCAGCTCAATAAGTTCCA 60.245 43.478 9.47 0.00 0.00 3.53
290 291 3.338249 TGTCTGCAGCTCAATAAGTTCC 58.662 45.455 9.47 0.00 0.00 3.62
291 292 4.201891 CCATGTCTGCAGCTCAATAAGTTC 60.202 45.833 9.47 0.00 0.00 3.01
292 293 3.693085 CCATGTCTGCAGCTCAATAAGTT 59.307 43.478 9.47 0.00 0.00 2.66
293 294 3.276857 CCATGTCTGCAGCTCAATAAGT 58.723 45.455 9.47 0.00 0.00 2.24
294 295 2.033049 GCCATGTCTGCAGCTCAATAAG 59.967 50.000 9.47 3.26 0.00 1.73
295 296 2.019249 GCCATGTCTGCAGCTCAATAA 58.981 47.619 9.47 0.00 0.00 1.40
296 297 1.065272 TGCCATGTCTGCAGCTCAATA 60.065 47.619 9.47 0.00 34.05 1.90
297 298 0.323087 TGCCATGTCTGCAGCTCAAT 60.323 50.000 9.47 0.00 34.05 2.57
298 299 0.323087 ATGCCATGTCTGCAGCTCAA 60.323 50.000 9.47 0.00 42.92 3.02
299 300 1.029947 CATGCCATGTCTGCAGCTCA 61.030 55.000 9.47 11.26 42.92 4.26
300 301 1.030488 ACATGCCATGTCTGCAGCTC 61.030 55.000 9.47 5.29 42.92 4.09
301 302 1.001269 ACATGCCATGTCTGCAGCT 60.001 52.632 9.47 0.00 42.92 4.24
302 303 1.138883 CACATGCCATGTCTGCAGC 59.861 57.895 7.51 4.92 42.70 5.25
303 304 1.138883 GCACATGCCATGTCTGCAG 59.861 57.895 7.51 7.63 42.70 4.41
304 305 2.692766 CGCACATGCCATGTCTGCA 61.693 57.895 17.28 0.00 42.70 4.41
305 306 1.368345 TACGCACATGCCATGTCTGC 61.368 55.000 7.51 8.73 42.70 4.26
306 307 0.374758 GTACGCACATGCCATGTCTG 59.625 55.000 7.51 5.83 42.70 3.51
307 308 0.036483 TGTACGCACATGCCATGTCT 60.036 50.000 7.51 0.00 42.70 3.41
308 309 1.016627 ATGTACGCACATGCCATGTC 58.983 50.000 7.51 2.49 43.89 3.06
309 310 2.158971 TCTATGTACGCACATGCCATGT 60.159 45.455 11.63 4.03 45.17 3.21
310 311 2.477754 CTCTATGTACGCACATGCCATG 59.522 50.000 11.63 2.40 45.17 3.66
311 312 2.365293 TCTCTATGTACGCACATGCCAT 59.635 45.455 11.63 0.00 45.17 4.40
312 313 1.754226 TCTCTATGTACGCACATGCCA 59.246 47.619 11.63 0.00 45.17 4.92
313 314 2.128035 GTCTCTATGTACGCACATGCC 58.872 52.381 11.63 0.00 45.17 4.40
314 315 2.128035 GGTCTCTATGTACGCACATGC 58.872 52.381 11.63 0.00 45.17 4.06
315 316 3.375642 CAGGTCTCTATGTACGCACATG 58.624 50.000 11.63 2.18 45.17 3.21
317 318 1.134367 GCAGGTCTCTATGTACGCACA 59.866 52.381 0.00 0.00 39.52 4.57
318 319 1.405821 AGCAGGTCTCTATGTACGCAC 59.594 52.381 0.00 0.00 0.00 5.34
319 320 1.405463 CAGCAGGTCTCTATGTACGCA 59.595 52.381 0.00 0.00 0.00 5.24
320 321 1.866063 GCAGCAGGTCTCTATGTACGC 60.866 57.143 0.00 0.00 0.00 4.42
321 322 1.598183 CGCAGCAGGTCTCTATGTACG 60.598 57.143 0.00 0.00 0.00 3.67
322 323 1.269309 CCGCAGCAGGTCTCTATGTAC 60.269 57.143 0.00 0.00 0.00 2.90
323 324 1.032794 CCGCAGCAGGTCTCTATGTA 58.967 55.000 0.00 0.00 0.00 2.29
324 325 0.684479 TCCGCAGCAGGTCTCTATGT 60.684 55.000 0.00 0.00 0.00 2.29
325 326 0.678395 ATCCGCAGCAGGTCTCTATG 59.322 55.000 0.00 0.00 0.00 2.23
326 327 0.678395 CATCCGCAGCAGGTCTCTAT 59.322 55.000 0.00 0.00 0.00 1.98
327 328 2.021068 GCATCCGCAGCAGGTCTCTA 62.021 60.000 0.00 0.00 38.36 2.43
328 329 2.898738 CATCCGCAGCAGGTCTCT 59.101 61.111 0.00 0.00 0.00 3.10
329 330 2.894387 GCATCCGCAGCAGGTCTC 60.894 66.667 0.00 0.00 38.36 3.36
330 331 3.709633 TGCATCCGCAGCAGGTCT 61.710 61.111 0.00 0.00 45.36 3.85
338 339 5.785639 CTGTAAGAAGAGGTGCATCCGCA 62.786 52.174 10.59 0.00 41.55 5.69
339 340 1.291132 GTAAGAAGAGGTGCATCCGC 58.709 55.000 0.00 0.00 41.99 5.54
340 341 2.544685 CTGTAAGAAGAGGTGCATCCG 58.455 52.381 0.00 0.00 37.46 4.18
341 342 2.501723 TCCTGTAAGAAGAGGTGCATCC 59.498 50.000 0.00 0.00 37.43 3.51
342 343 3.055819 TGTCCTGTAAGAAGAGGTGCATC 60.056 47.826 0.00 0.00 37.43 3.91
343 344 2.906389 TGTCCTGTAAGAAGAGGTGCAT 59.094 45.455 0.00 0.00 37.43 3.96
344 345 2.300152 CTGTCCTGTAAGAAGAGGTGCA 59.700 50.000 0.00 0.00 37.43 4.57
345 346 2.354203 CCTGTCCTGTAAGAAGAGGTGC 60.354 54.545 0.00 0.00 37.43 5.01
346 347 2.354203 GCCTGTCCTGTAAGAAGAGGTG 60.354 54.545 0.00 0.00 37.43 4.00
347 348 1.903183 GCCTGTCCTGTAAGAAGAGGT 59.097 52.381 0.00 0.00 37.43 3.85
348 349 2.093764 CAGCCTGTCCTGTAAGAAGAGG 60.094 54.545 0.00 0.00 37.51 3.69
349 350 2.564947 ACAGCCTGTCCTGTAAGAAGAG 59.435 50.000 0.00 0.00 43.86 2.85
350 351 2.563179 GACAGCCTGTCCTGTAAGAAGA 59.437 50.000 14.04 0.00 45.55 2.87
351 352 2.966050 GACAGCCTGTCCTGTAAGAAG 58.034 52.381 14.04 0.00 45.55 2.85
362 363 5.127194 TCAAGATAATTCGTAGACAGCCTGT 59.873 40.000 0.00 0.00 34.32 4.00
363 364 5.592054 TCAAGATAATTCGTAGACAGCCTG 58.408 41.667 0.00 0.00 34.32 4.85
364 365 5.737635 GCTCAAGATAATTCGTAGACAGCCT 60.738 44.000 0.00 0.00 34.32 4.58
365 366 4.446051 GCTCAAGATAATTCGTAGACAGCC 59.554 45.833 0.00 0.00 34.32 4.85
366 367 5.285651 AGCTCAAGATAATTCGTAGACAGC 58.714 41.667 0.00 0.00 34.32 4.40
367 368 6.975197 TGAAGCTCAAGATAATTCGTAGACAG 59.025 38.462 0.00 0.00 34.32 3.51
368 369 6.863275 TGAAGCTCAAGATAATTCGTAGACA 58.137 36.000 0.00 0.00 34.32 3.41
369 370 7.757097 TTGAAGCTCAAGATAATTCGTAGAC 57.243 36.000 0.00 0.00 30.63 2.59
370 371 8.948631 AATTGAAGCTCAAGATAATTCGTAGA 57.051 30.769 0.00 0.00 40.05 2.59
371 372 9.643652 GAAATTGAAGCTCAAGATAATTCGTAG 57.356 33.333 0.00 0.00 40.05 3.51
372 373 8.612619 GGAAATTGAAGCTCAAGATAATTCGTA 58.387 33.333 0.00 0.00 40.05 3.43
373 374 7.121168 TGGAAATTGAAGCTCAAGATAATTCGT 59.879 33.333 0.00 0.00 40.05 3.85
374 375 7.475015 TGGAAATTGAAGCTCAAGATAATTCG 58.525 34.615 0.00 0.00 40.05 3.34
383 384 9.352784 CGTTTTATTATGGAAATTGAAGCTCAA 57.647 29.630 0.00 0.00 41.09 3.02
384 385 8.519526 ACGTTTTATTATGGAAATTGAAGCTCA 58.480 29.630 0.00 0.00 0.00 4.26
385 386 8.798153 CACGTTTTATTATGGAAATTGAAGCTC 58.202 33.333 0.00 0.00 0.00 4.09
386 387 8.303876 ACACGTTTTATTATGGAAATTGAAGCT 58.696 29.630 0.00 0.00 0.00 3.74
387 388 8.372521 CACACGTTTTATTATGGAAATTGAAGC 58.627 33.333 0.00 0.00 0.00 3.86
388 389 9.405587 ACACACGTTTTATTATGGAAATTGAAG 57.594 29.630 0.00 0.00 0.00 3.02
389 390 9.751542 AACACACGTTTTATTATGGAAATTGAA 57.248 25.926 0.00 0.00 28.09 2.69
390 391 9.751542 AAACACACGTTTTATTATGGAAATTGA 57.248 25.926 0.00 0.00 42.82 2.57
406 407 9.535878 AAACCATGATAAATAAAAACACACGTT 57.464 25.926 0.00 0.00 36.73 3.99
407 408 9.187455 GAAACCATGATAAATAAAAACACACGT 57.813 29.630 0.00 0.00 0.00 4.49
408 409 9.405587 AGAAACCATGATAAATAAAAACACACG 57.594 29.630 0.00 0.00 0.00 4.49
410 411 9.921637 GGAGAAACCATGATAAATAAAAACACA 57.078 29.630 0.00 0.00 38.79 3.72
413 414 9.803315 GGAGGAGAAACCATGATAAATAAAAAC 57.197 33.333 0.00 0.00 42.04 2.43
414 415 9.768215 AGGAGGAGAAACCATGATAAATAAAAA 57.232 29.630 0.00 0.00 42.04 1.94
416 417 9.847224 GTAGGAGGAGAAACCATGATAAATAAA 57.153 33.333 0.00 0.00 42.04 1.40
417 418 8.998814 TGTAGGAGGAGAAACCATGATAAATAA 58.001 33.333 0.00 0.00 42.04 1.40
418 419 8.561536 TGTAGGAGGAGAAACCATGATAAATA 57.438 34.615 0.00 0.00 42.04 1.40
419 420 7.451731 TGTAGGAGGAGAAACCATGATAAAT 57.548 36.000 0.00 0.00 42.04 1.40
420 421 6.884472 TGTAGGAGGAGAAACCATGATAAA 57.116 37.500 0.00 0.00 42.04 1.40
421 422 6.615316 TCATGTAGGAGGAGAAACCATGATAA 59.385 38.462 0.00 0.00 42.04 1.75
422 423 6.042093 GTCATGTAGGAGGAGAAACCATGATA 59.958 42.308 0.00 0.00 42.04 2.15
423 424 4.971282 TCATGTAGGAGGAGAAACCATGAT 59.029 41.667 0.00 0.00 42.04 2.45
424 425 4.162320 GTCATGTAGGAGGAGAAACCATGA 59.838 45.833 0.00 0.00 42.04 3.07
425 426 4.446371 GTCATGTAGGAGGAGAAACCATG 58.554 47.826 0.00 0.00 42.04 3.66
426 427 3.456277 GGTCATGTAGGAGGAGAAACCAT 59.544 47.826 0.00 0.00 42.04 3.55
427 428 2.838202 GGTCATGTAGGAGGAGAAACCA 59.162 50.000 0.00 0.00 42.04 3.67
428 429 2.838202 TGGTCATGTAGGAGGAGAAACC 59.162 50.000 0.00 0.00 39.35 3.27
429 430 4.553330 TTGGTCATGTAGGAGGAGAAAC 57.447 45.455 0.00 0.00 0.00 2.78
430 431 5.576563 TTTTGGTCATGTAGGAGGAGAAA 57.423 39.130 0.00 0.00 0.00 2.52
431 432 5.779241 ATTTTGGTCATGTAGGAGGAGAA 57.221 39.130 0.00 0.00 0.00 2.87
432 433 5.779241 AATTTTGGTCATGTAGGAGGAGA 57.221 39.130 0.00 0.00 0.00 3.71
433 434 5.358160 GGAAATTTTGGTCATGTAGGAGGAG 59.642 44.000 0.00 0.00 0.00 3.69
434 435 5.222233 TGGAAATTTTGGTCATGTAGGAGGA 60.222 40.000 0.00 0.00 0.00 3.71
435 436 5.016173 TGGAAATTTTGGTCATGTAGGAGG 58.984 41.667 0.00 0.00 0.00 4.30
436 437 5.945784 TCTGGAAATTTTGGTCATGTAGGAG 59.054 40.000 0.00 0.00 0.00 3.69
437 438 5.886609 TCTGGAAATTTTGGTCATGTAGGA 58.113 37.500 0.00 0.00 0.00 2.94
438 439 6.153340 ACATCTGGAAATTTTGGTCATGTAGG 59.847 38.462 0.00 0.00 0.00 3.18
439 440 7.161773 ACATCTGGAAATTTTGGTCATGTAG 57.838 36.000 0.00 0.00 0.00 2.74
440 441 7.015098 ACAACATCTGGAAATTTTGGTCATGTA 59.985 33.333 0.00 0.00 0.00 2.29
441 442 6.183360 ACAACATCTGGAAATTTTGGTCATGT 60.183 34.615 0.00 0.00 0.00 3.21
442 443 6.225318 ACAACATCTGGAAATTTTGGTCATG 58.775 36.000 0.00 0.00 0.00 3.07
443 444 6.423776 ACAACATCTGGAAATTTTGGTCAT 57.576 33.333 0.00 0.00 0.00 3.06
444 445 5.867903 ACAACATCTGGAAATTTTGGTCA 57.132 34.783 0.00 0.00 0.00 4.02
445 446 7.552458 AAAACAACATCTGGAAATTTTGGTC 57.448 32.000 0.00 0.00 0.00 4.02
446 447 7.392953 ACAAAAACAACATCTGGAAATTTTGGT 59.607 29.630 11.03 0.00 39.54 3.67
447 448 7.760437 ACAAAAACAACATCTGGAAATTTTGG 58.240 30.769 11.03 0.00 39.54 3.28
450 451 9.883142 TCTAACAAAAACAACATCTGGAAATTT 57.117 25.926 0.00 0.00 0.00 1.82
451 452 9.883142 TTCTAACAAAAACAACATCTGGAAATT 57.117 25.926 0.00 0.00 0.00 1.82
452 453 9.313118 GTTCTAACAAAAACAACATCTGGAAAT 57.687 29.630 0.00 0.00 0.00 2.17
453 454 8.307483 TGTTCTAACAAAAACAACATCTGGAAA 58.693 29.630 0.00 0.00 35.67 3.13
454 455 7.831753 TGTTCTAACAAAAACAACATCTGGAA 58.168 30.769 0.00 0.00 35.67 3.53
455 456 7.397892 TGTTCTAACAAAAACAACATCTGGA 57.602 32.000 0.00 0.00 35.67 3.86
456 457 6.697019 CCTGTTCTAACAAAAACAACATCTGG 59.303 38.462 0.00 0.00 38.66 3.86
457 458 6.697019 CCCTGTTCTAACAAAAACAACATCTG 59.303 38.462 0.00 0.00 38.66 2.90
458 459 6.379988 ACCCTGTTCTAACAAAAACAACATCT 59.620 34.615 0.00 0.00 38.66 2.90
459 460 6.569780 ACCCTGTTCTAACAAAAACAACATC 58.430 36.000 0.00 0.00 38.66 3.06
460 461 6.538945 ACCCTGTTCTAACAAAAACAACAT 57.461 33.333 0.00 0.00 38.66 2.71
461 462 5.986501 ACCCTGTTCTAACAAAAACAACA 57.013 34.783 0.00 0.00 38.66 3.33
462 463 6.090223 CACAACCCTGTTCTAACAAAAACAAC 59.910 38.462 0.00 0.00 38.66 3.32
463 464 6.159988 CACAACCCTGTTCTAACAAAAACAA 58.840 36.000 0.00 0.00 38.66 2.83
464 465 5.715070 CACAACCCTGTTCTAACAAAAACA 58.285 37.500 0.00 0.00 38.66 2.83
465 466 4.565166 GCACAACCCTGTTCTAACAAAAAC 59.435 41.667 0.00 0.00 38.66 2.43
576 577 3.004752 ACCATGTTATGAAGTGAGCCC 57.995 47.619 0.00 0.00 0.00 5.19
1098 1161 2.611800 AGCTGGCCCCTCATGTGA 60.612 61.111 0.00 0.00 0.00 3.58
2818 2885 7.561021 TGTAAATTTGAAGCACTTGACTACA 57.439 32.000 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.