Multiple sequence alignment - TraesCS7B01G178500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G178500 chr7B 100.000 5083 0 0 1 5083 258899621 258904703 0.000000e+00 9387.0
1 TraesCS7B01G178500 chr7B 81.818 132 20 4 257 386 504245241 504245370 1.940000e-19 108.0
2 TraesCS7B01G178500 chr7D 97.267 4464 104 10 52 4509 318810771 318815222 0.000000e+00 7552.0
3 TraesCS7B01G178500 chr7D 90.385 260 19 4 4517 4775 318820187 318820441 2.270000e-88 337.0
4 TraesCS7B01G178500 chr7D 92.424 66 4 1 1260 1325 318811939 318812003 5.420000e-15 93.5
5 TraesCS7B01G178500 chr7D 96.875 32 1 0 1 32 318810678 318810709 3.000000e-03 54.7
6 TraesCS7B01G178500 chr7A 95.883 4178 105 22 542 4710 342805776 342809895 0.000000e+00 6700.0
7 TraesCS7B01G178500 chr7A 96.341 492 16 2 52 542 342804965 342805455 0.000000e+00 808.0
8 TraesCS7B01G178500 chr7A 90.909 66 5 1 1260 1325 342806428 342806492 2.520000e-13 87.9
9 TraesCS7B01G178500 chr7A 85.507 69 9 1 318 386 650594962 650594895 2.540000e-08 71.3
10 TraesCS7B01G178500 chr7A 96.875 32 1 0 1 32 342804870 342804901 3.000000e-03 54.7
11 TraesCS7B01G178500 chr6A 81.081 148 28 0 255 402 52978213 52978360 8.940000e-23 119.0
12 TraesCS7B01G178500 chr2A 81.944 144 18 7 257 398 768517466 768517329 1.160000e-21 115.0
13 TraesCS7B01G178500 chr2D 82.456 114 12 7 4819 4928 367094255 367094146 5.420000e-15 93.5
14 TraesCS7B01G178500 chr1D 77.922 154 19 9 574 721 479482561 479482417 1.170000e-11 82.4
15 TraesCS7B01G178500 chrUn 82.667 75 13 0 4853 4927 309293807 309293881 3.280000e-07 67.6
16 TraesCS7B01G178500 chr3A 95.238 42 2 0 344 385 131077605 131077646 3.280000e-07 67.6
17 TraesCS7B01G178500 chr1B 100.000 29 0 0 374 402 106903782 106903754 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G178500 chr7B 258899621 258904703 5082 False 9387.000000 9387 100.000 1 5083 1 chr7B.!!$F1 5082
1 TraesCS7B01G178500 chr7D 318810678 318815222 4544 False 2566.733333 7552 95.522 1 4509 3 chr7D.!!$F2 4508
2 TraesCS7B01G178500 chr7A 342804870 342809895 5025 False 1912.650000 6700 95.002 1 4710 4 chr7A.!!$F1 4709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
751 1118 1.303236 GGTGCATGTGGGTACTGCA 60.303 57.895 2.83 2.83 38.06 4.41 F
1592 1964 0.604780 GAGGCAGCTGCTTGACTTCA 60.605 55.000 35.82 0.00 36.28 3.02 F
2708 3084 1.003003 GGGGAGGCAGCTATTCTGATC 59.997 57.143 0.00 0.00 45.72 2.92 F
3227 3603 2.170607 CGGAGGTGACCAGGATTTATGT 59.829 50.000 3.63 0.00 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1873 2245 1.007336 CGAACGAACTCACCGGGAAG 61.007 60.000 6.32 4.91 0.00 3.46 R
2801 3177 1.709147 CTTTCATGCCCCGCTTCGAG 61.709 60.000 0.00 0.00 0.00 4.04 R
3688 4064 1.342819 CTACCTCTGCACCTCTATGGC 59.657 57.143 0.00 0.00 40.22 4.40 R
4746 5126 0.038251 TAGCTGAACGTCTGGCACTG 60.038 55.000 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.261671 CAACTCGCCGCTGTACCT 59.738 61.111 0.00 0.00 0.00 3.08
39 40 1.805945 CAACTCGCCGCTGTACCTC 60.806 63.158 0.00 0.00 0.00 3.85
40 41 3.003113 AACTCGCCGCTGTACCTCC 62.003 63.158 0.00 0.00 0.00 4.30
41 42 4.554363 CTCGCCGCTGTACCTCCG 62.554 72.222 0.00 0.00 0.00 4.63
47 48 3.755628 GCTGTACCTCCGCGGTCA 61.756 66.667 27.15 15.67 44.93 4.02
48 49 2.490217 CTGTACCTCCGCGGTCAG 59.510 66.667 27.15 16.41 44.93 3.51
72 117 4.083643 CGATAAATGGATGCGAAATCTGCT 60.084 41.667 0.00 0.00 0.00 4.24
232 277 1.893137 GGGGATTTTCCAGTGACCAAC 59.107 52.381 0.00 0.00 38.64 3.77
282 327 3.192001 TGTCACATAAGACCACCTACGTC 59.808 47.826 0.00 0.00 37.73 4.34
308 353 8.515695 TTCGTATAGACAGAAAAGACCATCTA 57.484 34.615 0.00 0.00 0.00 1.98
528 574 3.188254 TGCATGTGAACGATTACAAGTGG 59.812 43.478 0.00 0.00 0.00 4.00
579 946 3.910767 GTGTGCACGTCAAGTAGTAGTAC 59.089 47.826 13.13 0.00 0.00 2.73
751 1118 1.303236 GGTGCATGTGGGTACTGCA 60.303 57.895 2.83 2.83 38.06 4.41
1030 1399 6.871492 TCTTTCTGTCAATATGAAAGCGTACA 59.129 34.615 9.11 0.00 43.51 2.90
1050 1419 7.414098 GCGTACATGGTCTTATCTGACAAAAAT 60.414 37.037 0.00 0.00 38.61 1.82
1055 1424 6.310941 TGGTCTTATCTGACAAAAATTCCCA 58.689 36.000 0.00 0.00 38.61 4.37
1056 1425 6.434028 TGGTCTTATCTGACAAAAATTCCCAG 59.566 38.462 0.00 0.00 38.61 4.45
1057 1426 6.434340 GGTCTTATCTGACAAAAATTCCCAGT 59.566 38.462 0.00 0.00 38.61 4.00
1058 1427 7.362142 GGTCTTATCTGACAAAAATTCCCAGTC 60.362 40.741 0.00 0.00 38.61 3.51
1088 1460 2.674852 ACGAATTGCATAGTGCTGACAG 59.325 45.455 0.00 0.00 45.31 3.51
1162 1534 3.254166 TCTCAAGGAAAGCTTGCATCAAC 59.746 43.478 6.80 0.00 0.00 3.18
1307 1679 3.433615 GGTCTCACTGAAAAGGAACATCG 59.566 47.826 0.00 0.00 0.00 3.84
1465 1837 5.551760 ATCAACGGTCTAAATCAGCTTTG 57.448 39.130 0.00 0.00 0.00 2.77
1496 1868 4.613622 CGGTGTCCATTCTCAACATGAAAC 60.614 45.833 0.00 0.00 0.00 2.78
1499 1871 6.272318 GTGTCCATTCTCAACATGAAACAAA 58.728 36.000 0.00 0.00 0.00 2.83
1504 1876 6.347888 CCATTCTCAACATGAAACAAATTGCC 60.348 38.462 0.00 0.00 0.00 4.52
1592 1964 0.604780 GAGGCAGCTGCTTGACTTCA 60.605 55.000 35.82 0.00 36.28 3.02
1678 2050 4.234530 AGCAGCACAAAAGTTGAAGATC 57.765 40.909 0.00 0.00 0.00 2.75
1792 2164 1.330655 CCACACTATCCCTCGCCTGT 61.331 60.000 0.00 0.00 0.00 4.00
1873 2245 5.934625 TGACTTAGATTTCTGGAAAGCACTC 59.065 40.000 12.71 1.37 39.00 3.51
2299 2671 8.642908 TCTAACCATTATAGTCATGTTGTTCG 57.357 34.615 0.00 0.00 0.00 3.95
2468 2840 8.044060 TCAAGAACTATGTGCTTTAGATTTGG 57.956 34.615 0.00 0.00 27.12 3.28
2573 2949 2.432146 CTGTGGCTAGTGCATTCTCCTA 59.568 50.000 0.00 0.00 41.91 2.94
2588 2964 8.049117 TGCATTCTCCTAAACACAAGAAGATAT 58.951 33.333 0.00 0.00 31.75 1.63
2636 3012 6.591935 AGTTTGACACCAGACAAAATAGAGA 58.408 36.000 0.00 0.00 40.15 3.10
2708 3084 1.003003 GGGGAGGCAGCTATTCTGATC 59.997 57.143 0.00 0.00 45.72 2.92
2801 3177 4.376311 GCATTTGTTTTCCGCAACATCTTC 60.376 41.667 0.00 0.00 36.54 2.87
2874 3250 4.314522 TGCCTTTCAATTATGTCCCTGA 57.685 40.909 0.00 0.00 0.00 3.86
2883 3259 6.691508 TCAATTATGTCCCTGATCATACTCG 58.308 40.000 0.00 0.00 0.00 4.18
3067 3443 7.528996 TCATGTGGAAACTTGAAATGATCTT 57.471 32.000 0.00 0.00 0.00 2.40
3185 3561 6.306987 ACATATTCTGTTGGGAGTCTTTGTT 58.693 36.000 0.00 0.00 32.90 2.83
3227 3603 2.170607 CGGAGGTGACCAGGATTTATGT 59.829 50.000 3.63 0.00 0.00 2.29
3615 3991 2.897350 TGCTGGACTAGGACAGGTTAA 58.103 47.619 15.12 0.00 35.30 2.01
3688 4064 4.978099 ACAATTATGTGGCTCTCCTATGG 58.022 43.478 0.00 0.00 38.69 2.74
3719 4095 7.290248 AGAGGTGCAGAGGTAGCTTAAATTATA 59.710 37.037 0.00 0.00 37.60 0.98
3857 4233 7.408910 TCAAATGATTACGTCAATACATGCTG 58.591 34.615 0.00 0.00 40.97 4.41
3911 4291 3.550678 GGAAGTATTTACTTGCCTCGTCG 59.449 47.826 7.68 0.00 45.84 5.12
3973 4353 9.360093 CGAGTAATGAAGACTTGATAAACTTCT 57.640 33.333 0.00 0.00 39.28 2.85
3996 4376 7.056635 TCTGTTCTGTTGATTCTTCTTCCTTT 58.943 34.615 0.00 0.00 0.00 3.11
4148 4528 4.331168 GTCTGCAGAAATAGTACCAAGCAG 59.669 45.833 20.19 0.00 46.94 4.24
4186 4566 5.352569 GCTTGTGCAAGTGTCTTGTAGATAT 59.647 40.000 12.75 0.00 40.45 1.63
4260 4640 8.424731 GCTGTTTCCTTGTTATTTGTTAAATCG 58.575 33.333 0.00 0.00 32.38 3.34
4363 4743 3.458189 CTGGAAAGTAACGATAGCCCTG 58.542 50.000 0.00 0.00 42.67 4.45
4441 4821 3.845781 TCTCTTGTGTTTCCAGCTTCT 57.154 42.857 0.00 0.00 0.00 2.85
4495 4875 6.017357 CAGGAAAGGTCTTGTGGTAAAGTTAC 60.017 42.308 0.00 0.00 0.00 2.50
4503 4883 4.232188 TGTGGTAAAGTTACACCCACAA 57.768 40.909 7.32 0.00 33.50 3.33
4533 4913 8.856247 GTTTGAAGTTTTTGTAAATCTGTCGTT 58.144 29.630 0.00 0.00 0.00 3.85
4616 4996 4.430007 CATGATCTTGGGTGAAGCAAATG 58.570 43.478 0.61 0.00 0.00 2.32
4662 5042 9.907576 GAAAAGATAGTTTCTTGTATGATCACG 57.092 33.333 0.00 0.00 44.09 4.35
4663 5043 9.436957 AAAAGATAGTTTCTTGTATGATCACGT 57.563 29.630 0.00 0.00 44.09 4.49
4677 5057 8.135529 TGTATGATCACGTATTAAGTCTCCAAG 58.864 37.037 0.00 0.00 0.00 3.61
4684 5064 4.561606 CGTATTAAGTCTCCAAGTTGTCCG 59.438 45.833 1.45 0.00 0.00 4.79
4688 5068 4.411256 AAGTCTCCAAGTTGTCCGTAAA 57.589 40.909 1.45 0.00 0.00 2.01
4712 5092 6.957984 CATGGACATGTCTATTCGAATAGG 57.042 41.667 33.91 23.83 39.06 2.57
4713 5093 6.459066 CATGGACATGTCTATTCGAATAGGT 58.541 40.000 33.91 26.18 39.06 3.08
4714 5094 7.602753 CATGGACATGTCTATTCGAATAGGTA 58.397 38.462 33.91 25.67 39.06 3.08
4715 5095 7.776618 TGGACATGTCTATTCGAATAGGTAT 57.223 36.000 33.91 26.43 39.06 2.73
4716 5096 8.873186 TGGACATGTCTATTCGAATAGGTATA 57.127 34.615 33.91 20.28 39.06 1.47
4717 5097 9.304335 TGGACATGTCTATTCGAATAGGTATAA 57.696 33.333 33.91 18.61 39.06 0.98
4718 5098 9.570488 GGACATGTCTATTCGAATAGGTATAAC 57.430 37.037 33.91 26.32 39.06 1.89
4719 5099 9.570488 GACATGTCTATTCGAATAGGTATAACC 57.430 37.037 33.91 19.24 39.06 2.85
4748 5128 6.490566 GGTGTGTACCAATTTACCTAACAG 57.509 41.667 0.00 0.00 46.71 3.16
4749 5129 5.999600 GGTGTGTACCAATTTACCTAACAGT 59.000 40.000 0.00 0.00 46.71 3.55
4750 5130 6.072893 GGTGTGTACCAATTTACCTAACAGTG 60.073 42.308 0.00 0.00 46.71 3.66
4751 5131 5.470777 TGTGTACCAATTTACCTAACAGTGC 59.529 40.000 0.00 0.00 0.00 4.40
4752 5132 5.005094 TGTACCAATTTACCTAACAGTGCC 58.995 41.667 0.00 0.00 0.00 5.01
4753 5133 4.107127 ACCAATTTACCTAACAGTGCCA 57.893 40.909 0.00 0.00 0.00 4.92
4754 5134 4.079253 ACCAATTTACCTAACAGTGCCAG 58.921 43.478 0.00 0.00 0.00 4.85
4755 5135 4.202524 ACCAATTTACCTAACAGTGCCAGA 60.203 41.667 0.00 0.00 0.00 3.86
4756 5136 4.156008 CCAATTTACCTAACAGTGCCAGAC 59.844 45.833 0.00 0.00 0.00 3.51
4757 5137 2.736144 TTACCTAACAGTGCCAGACG 57.264 50.000 0.00 0.00 0.00 4.18
4758 5138 1.624336 TACCTAACAGTGCCAGACGT 58.376 50.000 0.00 0.00 0.00 4.34
4759 5139 0.756903 ACCTAACAGTGCCAGACGTT 59.243 50.000 0.00 0.00 0.00 3.99
4760 5140 1.270147 ACCTAACAGTGCCAGACGTTC 60.270 52.381 0.00 0.00 0.00 3.95
4761 5141 1.270094 CCTAACAGTGCCAGACGTTCA 60.270 52.381 0.00 0.00 0.00 3.18
4762 5142 2.061773 CTAACAGTGCCAGACGTTCAG 58.938 52.381 0.00 0.00 0.00 3.02
4763 5143 1.160329 AACAGTGCCAGACGTTCAGC 61.160 55.000 0.00 0.00 0.00 4.26
4764 5144 1.301244 CAGTGCCAGACGTTCAGCT 60.301 57.895 0.00 0.00 0.00 4.24
4765 5145 0.038251 CAGTGCCAGACGTTCAGCTA 60.038 55.000 0.00 0.00 0.00 3.32
4766 5146 0.898320 AGTGCCAGACGTTCAGCTAT 59.102 50.000 0.00 0.00 0.00 2.97
4767 5147 2.100197 AGTGCCAGACGTTCAGCTATA 58.900 47.619 0.00 0.00 0.00 1.31
4768 5148 2.695666 AGTGCCAGACGTTCAGCTATAT 59.304 45.455 0.00 0.00 0.00 0.86
4769 5149 2.797156 GTGCCAGACGTTCAGCTATATG 59.203 50.000 0.00 0.00 0.00 1.78
4770 5150 2.693074 TGCCAGACGTTCAGCTATATGA 59.307 45.455 0.00 0.00 0.00 2.15
4771 5151 3.132111 TGCCAGACGTTCAGCTATATGAA 59.868 43.478 0.00 0.00 36.85 2.57
4772 5152 4.119862 GCCAGACGTTCAGCTATATGAAA 58.880 43.478 0.00 0.00 40.72 2.69
4773 5153 4.025647 GCCAGACGTTCAGCTATATGAAAC 60.026 45.833 0.00 0.00 40.72 2.78
4774 5154 5.352284 CCAGACGTTCAGCTATATGAAACT 58.648 41.667 0.00 0.00 40.72 2.66
4775 5155 5.460419 CCAGACGTTCAGCTATATGAAACTC 59.540 44.000 0.00 0.00 40.72 3.01
4776 5156 5.172232 CAGACGTTCAGCTATATGAAACTCG 59.828 44.000 0.00 0.00 40.72 4.18
4777 5157 4.360563 ACGTTCAGCTATATGAAACTCGG 58.639 43.478 0.00 0.00 40.72 4.63
4778 5158 3.736252 CGTTCAGCTATATGAAACTCGGG 59.264 47.826 0.00 0.00 40.72 5.14
4779 5159 4.694339 GTTCAGCTATATGAAACTCGGGT 58.306 43.478 0.00 0.00 40.72 5.28
4780 5160 4.322080 TCAGCTATATGAAACTCGGGTG 57.678 45.455 0.00 0.00 0.00 4.61
4781 5161 3.958147 TCAGCTATATGAAACTCGGGTGA 59.042 43.478 0.00 0.00 0.00 4.02
4782 5162 4.404394 TCAGCTATATGAAACTCGGGTGAA 59.596 41.667 0.00 0.00 0.00 3.18
4783 5163 4.508124 CAGCTATATGAAACTCGGGTGAAC 59.492 45.833 0.00 0.00 0.00 3.18
4784 5164 4.161565 AGCTATATGAAACTCGGGTGAACA 59.838 41.667 0.00 0.00 0.00 3.18
4785 5165 4.508124 GCTATATGAAACTCGGGTGAACAG 59.492 45.833 0.00 0.00 0.00 3.16
4786 5166 2.930826 ATGAAACTCGGGTGAACAGT 57.069 45.000 0.00 0.00 0.00 3.55
4787 5167 5.670792 ATATGAAACTCGGGTGAACAGTA 57.329 39.130 0.00 0.00 0.00 2.74
4788 5168 3.823281 TGAAACTCGGGTGAACAGTAA 57.177 42.857 0.00 0.00 0.00 2.24
4789 5169 4.139859 TGAAACTCGGGTGAACAGTAAA 57.860 40.909 0.00 0.00 0.00 2.01
4790 5170 4.515361 TGAAACTCGGGTGAACAGTAAAA 58.485 39.130 0.00 0.00 0.00 1.52
4791 5171 4.573201 TGAAACTCGGGTGAACAGTAAAAG 59.427 41.667 0.00 0.00 0.00 2.27
4792 5172 2.490991 ACTCGGGTGAACAGTAAAAGC 58.509 47.619 0.00 0.00 0.00 3.51
4793 5173 2.158871 ACTCGGGTGAACAGTAAAAGCA 60.159 45.455 0.00 0.00 0.00 3.91
4794 5174 3.074412 CTCGGGTGAACAGTAAAAGCAT 58.926 45.455 0.00 0.00 0.00 3.79
4795 5175 4.250464 CTCGGGTGAACAGTAAAAGCATA 58.750 43.478 0.00 0.00 0.00 3.14
4796 5176 4.643463 TCGGGTGAACAGTAAAAGCATAA 58.357 39.130 0.00 0.00 0.00 1.90
4797 5177 5.064558 TCGGGTGAACAGTAAAAGCATAAA 58.935 37.500 0.00 0.00 0.00 1.40
4798 5178 5.531659 TCGGGTGAACAGTAAAAGCATAAAA 59.468 36.000 0.00 0.00 0.00 1.52
4799 5179 6.039493 TCGGGTGAACAGTAAAAGCATAAAAA 59.961 34.615 0.00 0.00 0.00 1.94
4865 5245 7.850268 TTTTTGTGTCGAACATTCACATATG 57.150 32.000 6.63 0.00 40.85 1.78
4866 5246 6.552859 TTTGTGTCGAACATTCACATATGT 57.447 33.333 1.41 1.41 40.85 2.29
4868 5248 6.552859 TGTGTCGAACATTCACATATGTTT 57.447 33.333 5.37 0.00 45.98 2.83
4869 5249 6.964908 TGTGTCGAACATTCACATATGTTTT 58.035 32.000 5.37 0.00 45.98 2.43
4870 5250 6.855403 TGTGTCGAACATTCACATATGTTTTG 59.145 34.615 5.37 6.74 45.98 2.44
4871 5251 7.075121 GTGTCGAACATTCACATATGTTTTGA 58.925 34.615 5.37 4.44 45.98 2.69
4872 5252 7.750458 GTGTCGAACATTCACATATGTTTTGAT 59.250 33.333 5.37 0.00 45.98 2.57
4873 5253 8.296000 TGTCGAACATTCACATATGTTTTGATT 58.704 29.630 5.37 0.00 45.98 2.57
4874 5254 8.577939 GTCGAACATTCACATATGTTTTGATTG 58.422 33.333 5.37 9.76 45.98 2.67
4875 5255 7.754475 TCGAACATTCACATATGTTTTGATTGG 59.246 33.333 5.37 0.72 45.98 3.16
4876 5256 7.541783 CGAACATTCACATATGTTTTGATTGGT 59.458 33.333 5.37 6.31 45.98 3.67
4877 5257 9.206870 GAACATTCACATATGTTTTGATTGGTT 57.793 29.630 5.37 5.95 45.98 3.67
4878 5258 8.537049 ACATTCACATATGTTTTGATTGGTTG 57.463 30.769 5.37 0.00 35.24 3.77
4879 5259 7.118101 ACATTCACATATGTTTTGATTGGTTGC 59.882 33.333 5.37 0.00 35.24 4.17
4880 5260 6.094193 TCACATATGTTTTGATTGGTTGCA 57.906 33.333 5.37 0.00 0.00 4.08
4881 5261 6.519382 TCACATATGTTTTGATTGGTTGCAA 58.481 32.000 5.37 0.00 0.00 4.08
4882 5262 6.988580 TCACATATGTTTTGATTGGTTGCAAA 59.011 30.769 5.37 0.00 32.63 3.68
4883 5263 7.171167 TCACATATGTTTTGATTGGTTGCAAAG 59.829 33.333 5.37 0.00 35.64 2.77
4884 5264 6.991531 ACATATGTTTTGATTGGTTGCAAAGT 59.008 30.769 0.00 0.00 35.64 2.66
4885 5265 7.498570 ACATATGTTTTGATTGGTTGCAAAGTT 59.501 29.630 0.00 0.00 35.64 2.66
4886 5266 6.756299 ATGTTTTGATTGGTTGCAAAGTTT 57.244 29.167 0.00 0.00 35.64 2.66
4887 5267 6.175712 TGTTTTGATTGGTTGCAAAGTTTC 57.824 33.333 0.00 0.00 35.64 2.78
4888 5268 5.702670 TGTTTTGATTGGTTGCAAAGTTTCA 59.297 32.000 0.00 0.00 35.64 2.69
4889 5269 6.373774 TGTTTTGATTGGTTGCAAAGTTTCAT 59.626 30.769 0.00 0.00 35.64 2.57
4890 5270 6.601741 TTTGATTGGTTGCAAAGTTTCATC 57.398 33.333 0.00 0.00 31.07 2.92
4891 5271 5.273674 TGATTGGTTGCAAAGTTTCATCA 57.726 34.783 0.00 0.95 0.00 3.07
4892 5272 5.049167 TGATTGGTTGCAAAGTTTCATCAC 58.951 37.500 0.00 0.00 0.00 3.06
4893 5273 3.077229 TGGTTGCAAAGTTTCATCACG 57.923 42.857 0.00 0.00 0.00 4.35
4894 5274 2.685388 TGGTTGCAAAGTTTCATCACGA 59.315 40.909 0.00 0.00 0.00 4.35
4895 5275 3.243035 TGGTTGCAAAGTTTCATCACGAG 60.243 43.478 0.00 0.00 0.00 4.18
4896 5276 3.300009 GTTGCAAAGTTTCATCACGAGG 58.700 45.455 0.00 0.00 0.00 4.63
4897 5277 2.571212 TGCAAAGTTTCATCACGAGGT 58.429 42.857 0.00 0.00 0.00 3.85
4898 5278 2.290367 TGCAAAGTTTCATCACGAGGTG 59.710 45.455 0.00 0.00 34.45 4.00
4899 5279 2.548057 GCAAAGTTTCATCACGAGGTGA 59.452 45.455 0.38 0.38 46.90 4.02
4900 5280 3.607078 GCAAAGTTTCATCACGAGGTGAC 60.607 47.826 0.00 0.00 45.65 3.67
4901 5281 3.469008 AAGTTTCATCACGAGGTGACA 57.531 42.857 0.00 0.00 45.65 3.58
4902 5282 3.685139 AGTTTCATCACGAGGTGACAT 57.315 42.857 0.00 0.00 45.65 3.06
4903 5283 4.008074 AGTTTCATCACGAGGTGACATT 57.992 40.909 0.00 0.00 45.65 2.71
4904 5284 3.997021 AGTTTCATCACGAGGTGACATTC 59.003 43.478 0.00 0.00 45.65 2.67
4905 5285 3.676291 TTCATCACGAGGTGACATTCA 57.324 42.857 0.00 0.00 45.65 2.57
4906 5286 3.893326 TCATCACGAGGTGACATTCAT 57.107 42.857 0.00 0.00 45.65 2.57
4907 5287 3.524541 TCATCACGAGGTGACATTCATG 58.475 45.455 0.00 0.00 45.65 3.07
4908 5288 3.055891 TCATCACGAGGTGACATTCATGT 60.056 43.478 0.00 0.00 45.65 3.21
4909 5289 4.159506 TCATCACGAGGTGACATTCATGTA 59.840 41.667 0.00 0.00 45.65 2.29
4910 5290 4.529109 TCACGAGGTGACATTCATGTAA 57.471 40.909 0.00 0.00 41.95 2.41
4911 5291 4.888917 TCACGAGGTGACATTCATGTAAA 58.111 39.130 0.00 0.00 41.95 2.01
4912 5292 5.301555 TCACGAGGTGACATTCATGTAAAA 58.698 37.500 0.00 0.00 41.95 1.52
4913 5293 5.178623 TCACGAGGTGACATTCATGTAAAAC 59.821 40.000 0.00 0.00 41.95 2.43
4914 5294 4.151689 ACGAGGTGACATTCATGTAAAACG 59.848 41.667 0.00 0.00 41.95 3.60
4915 5295 4.151689 CGAGGTGACATTCATGTAAAACGT 59.848 41.667 0.00 0.00 41.95 3.99
4916 5296 5.356882 AGGTGACATTCATGTAAAACGTG 57.643 39.130 0.00 0.00 41.95 4.49
4917 5297 4.215399 AGGTGACATTCATGTAAAACGTGG 59.785 41.667 0.00 0.00 41.95 4.94
4918 5298 3.911964 GTGACATTCATGTAAAACGTGGC 59.088 43.478 0.00 0.00 41.95 5.01
4919 5299 3.565902 TGACATTCATGTAAAACGTGGCA 59.434 39.130 0.00 0.00 41.95 4.92
4920 5300 4.036852 TGACATTCATGTAAAACGTGGCAA 59.963 37.500 0.00 0.00 41.95 4.52
4921 5301 4.545610 ACATTCATGTAAAACGTGGCAAG 58.454 39.130 0.00 0.00 39.68 4.01
4922 5302 4.277174 ACATTCATGTAAAACGTGGCAAGA 59.723 37.500 7.60 0.00 39.68 3.02
4923 5303 4.902443 TTCATGTAAAACGTGGCAAGAA 57.098 36.364 7.60 0.00 35.86 2.52
4924 5304 4.902443 TCATGTAAAACGTGGCAAGAAA 57.098 36.364 7.60 0.00 35.86 2.52
4925 5305 5.250235 TCATGTAAAACGTGGCAAGAAAA 57.750 34.783 7.60 0.00 35.86 2.29
4926 5306 5.651530 TCATGTAAAACGTGGCAAGAAAAA 58.348 33.333 7.60 0.00 35.86 1.94
4927 5307 6.276847 TCATGTAAAACGTGGCAAGAAAAAT 58.723 32.000 7.60 0.00 35.86 1.82
4928 5308 5.957910 TGTAAAACGTGGCAAGAAAAATG 57.042 34.783 7.60 0.00 0.00 2.32
4929 5309 3.942539 AAAACGTGGCAAGAAAAATGC 57.057 38.095 7.60 0.00 43.08 3.56
4930 5310 2.888834 AACGTGGCAAGAAAAATGCT 57.111 40.000 7.60 0.00 43.34 3.79
4931 5311 2.422276 ACGTGGCAAGAAAAATGCTC 57.578 45.000 7.60 0.00 43.34 4.26
4932 5312 1.000274 ACGTGGCAAGAAAAATGCTCC 60.000 47.619 7.60 0.00 43.34 4.70
4933 5313 1.000385 CGTGGCAAGAAAAATGCTCCA 60.000 47.619 0.00 0.00 43.34 3.86
4934 5314 2.545532 CGTGGCAAGAAAAATGCTCCAA 60.546 45.455 0.00 0.00 43.34 3.53
4935 5315 3.465871 GTGGCAAGAAAAATGCTCCAAA 58.534 40.909 0.00 0.00 43.34 3.28
4936 5316 3.876320 GTGGCAAGAAAAATGCTCCAAAA 59.124 39.130 0.00 0.00 43.34 2.44
4937 5317 4.516321 GTGGCAAGAAAAATGCTCCAAAAT 59.484 37.500 0.00 0.00 43.34 1.82
4938 5318 4.515944 TGGCAAGAAAAATGCTCCAAAATG 59.484 37.500 0.00 0.00 43.34 2.32
4939 5319 4.469552 GCAAGAAAAATGCTCCAAAATGC 58.530 39.130 0.00 0.00 40.64 3.56
4940 5320 4.023878 GCAAGAAAAATGCTCCAAAATGCA 60.024 37.500 0.00 0.00 43.67 3.96
4948 5328 5.664294 ATGCTCCAAAATGCATAGACAAA 57.336 34.783 0.00 0.00 46.53 2.83
4949 5329 5.465532 TGCTCCAAAATGCATAGACAAAA 57.534 34.783 0.00 0.00 33.94 2.44
4950 5330 5.851720 TGCTCCAAAATGCATAGACAAAAA 58.148 33.333 0.00 0.00 33.94 1.94
4971 5351 5.989551 AAAAATCAACGCTCAAAAATGCT 57.010 30.435 0.00 0.00 0.00 3.79
4972 5352 5.989551 AAAATCAACGCTCAAAAATGCTT 57.010 30.435 0.00 0.00 0.00 3.91
4973 5353 5.989551 AAATCAACGCTCAAAAATGCTTT 57.010 30.435 0.00 0.00 0.00 3.51
4974 5354 5.989551 AATCAACGCTCAAAAATGCTTTT 57.010 30.435 0.00 0.00 35.02 2.27
4975 5355 7.475771 AAATCAACGCTCAAAAATGCTTTTA 57.524 28.000 0.00 0.00 32.85 1.52
4976 5356 7.475771 AATCAACGCTCAAAAATGCTTTTAA 57.524 28.000 0.00 0.00 32.85 1.52
4977 5357 6.893958 TCAACGCTCAAAAATGCTTTTAAA 57.106 29.167 0.00 0.00 32.85 1.52
4978 5358 7.295952 TCAACGCTCAAAAATGCTTTTAAAA 57.704 28.000 0.00 0.00 32.85 1.52
4979 5359 7.743104 TCAACGCTCAAAAATGCTTTTAAAAA 58.257 26.923 1.66 0.00 32.85 1.94
4980 5360 7.690224 TCAACGCTCAAAAATGCTTTTAAAAAC 59.310 29.630 1.66 0.00 32.85 2.43
4981 5361 7.302350 ACGCTCAAAAATGCTTTTAAAAACT 57.698 28.000 1.66 0.00 32.85 2.66
4982 5362 7.179410 ACGCTCAAAAATGCTTTTAAAAACTG 58.821 30.769 1.66 0.00 32.85 3.16
4983 5363 6.139013 CGCTCAAAAATGCTTTTAAAAACTGC 59.861 34.615 1.66 3.12 32.85 4.40
4984 5364 6.966066 GCTCAAAAATGCTTTTAAAAACTGCA 59.034 30.769 13.69 13.69 32.85 4.41
4985 5365 7.644945 GCTCAAAAATGCTTTTAAAAACTGCAT 59.355 29.630 16.31 16.31 44.86 3.96
4993 5373 6.966066 TGCTTTTAAAAACTGCATTTTGAAGC 59.034 30.769 23.96 23.96 43.60 3.86
4994 5374 6.966066 GCTTTTAAAAACTGCATTTTGAAGCA 59.034 30.769 24.79 7.99 43.28 3.91
4995 5375 7.644945 GCTTTTAAAAACTGCATTTTGAAGCAT 59.355 29.630 24.79 4.42 43.28 3.79
4998 5378 9.539825 TTTAAAAACTGCATTTTGAAGCATAGA 57.460 25.926 2.45 0.00 39.70 1.98
4999 5379 9.709495 TTAAAAACTGCATTTTGAAGCATAGAT 57.291 25.926 2.45 0.00 39.70 1.98
5000 5380 8.611654 AAAAACTGCATTTTGAAGCATAGATT 57.388 26.923 2.45 0.00 39.70 2.40
5001 5381 8.611654 AAAACTGCATTTTGAAGCATAGATTT 57.388 26.923 2.45 0.00 39.13 2.17
5002 5382 8.611654 AAACTGCATTTTGAAGCATAGATTTT 57.388 26.923 0.62 0.00 40.42 1.82
5003 5383 7.591006 ACTGCATTTTGAAGCATAGATTTTG 57.409 32.000 0.00 0.00 40.42 2.44
5004 5384 7.156673 ACTGCATTTTGAAGCATAGATTTTGT 58.843 30.769 0.00 0.00 40.42 2.83
5005 5385 7.658575 ACTGCATTTTGAAGCATAGATTTTGTT 59.341 29.630 0.00 0.00 40.42 2.83
5006 5386 8.380743 TGCATTTTGAAGCATAGATTTTGTTT 57.619 26.923 0.00 0.00 35.51 2.83
5007 5387 8.838365 TGCATTTTGAAGCATAGATTTTGTTTT 58.162 25.926 0.00 0.00 35.51 2.43
5008 5388 9.667989 GCATTTTGAAGCATAGATTTTGTTTTT 57.332 25.926 0.00 0.00 0.00 1.94
5031 5411 9.853555 TTTTTACCATGTGTTCATATGAATGTC 57.146 29.630 20.65 13.85 36.33 3.06
5032 5412 8.806429 TTTACCATGTGTTCATATGAATGTCT 57.194 30.769 20.65 4.84 36.33 3.41
5033 5413 8.806429 TTACCATGTGTTCATATGAATGTCTT 57.194 30.769 20.65 9.73 36.33 3.01
5034 5414 7.092137 ACCATGTGTTCATATGAATGTCTTG 57.908 36.000 20.65 18.11 36.33 3.02
5035 5415 5.975344 CCATGTGTTCATATGAATGTCTTGC 59.025 40.000 20.65 7.15 36.33 4.01
5036 5416 6.404954 CCATGTGTTCATATGAATGTCTTGCA 60.405 38.462 20.65 9.58 36.33 4.08
5037 5417 6.572167 TGTGTTCATATGAATGTCTTGCAA 57.428 33.333 20.65 0.00 36.33 4.08
5038 5418 7.160547 TGTGTTCATATGAATGTCTTGCAAT 57.839 32.000 20.65 0.00 36.33 3.56
5039 5419 7.252708 TGTGTTCATATGAATGTCTTGCAATC 58.747 34.615 20.65 4.65 36.33 2.67
5040 5420 6.694411 GTGTTCATATGAATGTCTTGCAATCC 59.306 38.462 20.65 4.46 36.33 3.01
5041 5421 6.377712 TGTTCATATGAATGTCTTGCAATCCA 59.622 34.615 20.65 6.90 36.33 3.41
5042 5422 6.381481 TCATATGAATGTCTTGCAATCCAC 57.619 37.500 1.98 0.00 34.50 4.02
5043 5423 6.124340 TCATATGAATGTCTTGCAATCCACT 58.876 36.000 1.98 0.00 34.50 4.00
5044 5424 7.281841 TCATATGAATGTCTTGCAATCCACTA 58.718 34.615 1.98 0.00 34.50 2.74
5045 5425 7.774625 TCATATGAATGTCTTGCAATCCACTAA 59.225 33.333 1.98 0.00 34.50 2.24
5046 5426 6.839124 ATGAATGTCTTGCAATCCACTAAA 57.161 33.333 0.00 0.00 0.00 1.85
5047 5427 6.839124 TGAATGTCTTGCAATCCACTAAAT 57.161 33.333 0.00 0.00 0.00 1.40
5048 5428 7.230849 TGAATGTCTTGCAATCCACTAAATT 57.769 32.000 0.00 0.00 0.00 1.82
5049 5429 7.669427 TGAATGTCTTGCAATCCACTAAATTT 58.331 30.769 0.00 0.00 0.00 1.82
5050 5430 8.149647 TGAATGTCTTGCAATCCACTAAATTTT 58.850 29.630 0.00 0.00 0.00 1.82
5051 5431 8.907222 AATGTCTTGCAATCCACTAAATTTTT 57.093 26.923 0.00 0.00 0.00 1.94
5077 5457 5.453648 TCAACGTTTGACCAAAAATATCCG 58.546 37.500 0.00 0.00 34.08 4.18
5078 5458 5.238868 TCAACGTTTGACCAAAAATATCCGA 59.761 36.000 0.00 0.00 34.08 4.55
5079 5459 5.890424 ACGTTTGACCAAAAATATCCGAT 57.110 34.783 7.56 0.00 31.33 4.18
5080 5460 6.262193 ACGTTTGACCAAAAATATCCGATT 57.738 33.333 7.56 0.00 31.33 3.34
5081 5461 6.683715 ACGTTTGACCAAAAATATCCGATTT 58.316 32.000 7.56 0.00 31.33 2.17
5082 5462 7.818642 ACGTTTGACCAAAAATATCCGATTTA 58.181 30.769 7.56 0.00 31.33 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.195448 CATCCATTTATCGCTGACCGC 59.805 52.381 0.00 0.00 36.73 5.68
43 44 1.195448 CGCATCCATTTATCGCTGACC 59.805 52.381 0.00 0.00 0.00 4.02
44 45 2.135139 TCGCATCCATTTATCGCTGAC 58.865 47.619 0.00 0.00 0.00 3.51
45 46 2.524569 TCGCATCCATTTATCGCTGA 57.475 45.000 0.00 0.00 0.00 4.26
47 48 4.067896 AGATTTCGCATCCATTTATCGCT 58.932 39.130 0.00 0.00 0.00 4.93
48 49 4.153986 CAGATTTCGCATCCATTTATCGC 58.846 43.478 0.00 0.00 0.00 4.58
50 51 5.049198 TGAGCAGATTTCGCATCCATTTATC 60.049 40.000 0.00 0.00 0.00 1.75
72 117 2.074576 CTCTCACGGTCGTCTAACTGA 58.925 52.381 0.00 0.00 0.00 3.41
232 277 2.830923 CCAGACTGGGAGCTATATGAGG 59.169 54.545 14.26 0.00 32.67 3.86
282 327 7.484975 AGATGGTCTTTTCTGTCTATACGAAG 58.515 38.462 0.00 0.00 0.00 3.79
330 375 1.893808 CCGCCATGGCATAGGTGAC 60.894 63.158 34.93 3.77 42.06 3.67
394 439 1.002746 TATTGCAACCGAGCTGCCA 60.003 52.632 0.00 0.00 39.13 4.92
455 500 3.094062 GCCATCAGGAGTAGCGGCA 62.094 63.158 1.45 0.00 39.38 5.69
456 501 2.280457 GCCATCAGGAGTAGCGGC 60.280 66.667 0.00 0.00 36.89 6.53
457 502 1.068753 CAGCCATCAGGAGTAGCGG 59.931 63.158 0.00 0.00 36.89 5.52
459 504 1.227793 GGCAGCCATCAGGAGTAGC 60.228 63.158 6.55 0.00 36.89 3.58
460 505 1.068753 CGGCAGCCATCAGGAGTAG 59.931 63.158 13.30 0.00 36.89 2.57
461 506 3.094062 GCGGCAGCCATCAGGAGTA 62.094 63.158 13.30 0.00 36.89 2.59
528 574 5.746245 CGATTCATCTAGTGACAGAAAGGAC 59.254 44.000 0.00 0.00 36.32 3.85
579 946 3.868077 GCACCTTAGACTAGACATTGCTG 59.132 47.826 0.00 0.00 0.00 4.41
741 1108 1.080638 AATTCCCCTTGCAGTACCCA 58.919 50.000 0.00 0.00 0.00 4.51
751 1118 6.561294 TCCTTATCTGACAAAAATTCCCCTT 58.439 36.000 0.00 0.00 0.00 3.95
925 1294 1.736645 CGACAAGTGGCACCTACCG 60.737 63.158 15.27 9.70 0.00 4.02
987 1356 1.964223 AGAACCATCTGCGATCCGTAT 59.036 47.619 0.00 0.00 33.59 3.06
1030 1399 6.953520 TGGGAATTTTTGTCAGATAAGACCAT 59.046 34.615 0.00 0.00 37.73 3.55
1050 1419 1.069090 GTGCACGTCAGACTGGGAA 59.931 57.895 0.00 0.00 0.00 3.97
1055 1424 1.139989 CAATTCGTGCACGTCAGACT 58.860 50.000 35.74 14.75 40.80 3.24
1056 1425 3.639222 CAATTCGTGCACGTCAGAC 57.361 52.632 35.74 0.00 40.80 3.51
1088 1460 4.487714 TGATCCAACCAGTTACATCTCC 57.512 45.455 0.00 0.00 0.00 3.71
1162 1534 9.474920 TGCTTGAAAATATTTACTCCAGTTTTG 57.525 29.630 0.01 0.00 0.00 2.44
1465 1837 1.004200 AATGGACACCGACGGAACC 60.004 57.895 23.38 19.31 0.00 3.62
1504 1876 3.306902 TGGTCTAAGGGAGCAGGAG 57.693 57.895 0.00 0.00 45.96 3.69
1592 1964 2.667536 CGCTGAAGCTGCACACCT 60.668 61.111 1.02 0.00 39.32 4.00
1627 1999 2.360475 GGCACCACCTCAGCCTTC 60.360 66.667 0.00 0.00 44.92 3.46
1678 2050 5.327091 CACCAAGTCGCAAAATAGATTGAG 58.673 41.667 0.00 0.00 31.84 3.02
1792 2164 1.227468 GAGCATCATCGCTGAGCCA 60.227 57.895 0.00 0.00 44.01 4.75
1873 2245 1.007336 CGAACGAACTCACCGGGAAG 61.007 60.000 6.32 4.91 0.00 3.46
2306 2678 9.998106 AGTTAACTGATAGAAACTGCTTCTTTA 57.002 29.630 7.48 0.00 41.97 1.85
2324 2696 6.867662 AAGAATTGTCACCTCAGTTAACTG 57.132 37.500 26.60 26.60 45.08 3.16
2521 2895 5.560966 ACCATTCGCCTAATTTACACAAG 57.439 39.130 0.00 0.00 0.00 3.16
2708 3084 6.105333 GCTATTAGCATCATGGAAGGAGTAG 58.895 44.000 10.83 0.00 41.89 2.57
2801 3177 1.709147 CTTTCATGCCCCGCTTCGAG 61.709 60.000 0.00 0.00 0.00 4.04
3185 3561 4.497173 CCGACACAACATGTTGAATTGTCA 60.497 41.667 35.39 0.00 44.67 3.58
3206 3582 2.170607 ACATAAATCCTGGTCACCTCCG 59.829 50.000 0.00 0.00 0.00 4.63
3227 3603 5.407084 CGATATATGTTCGGGTACAAATGCA 59.593 40.000 0.00 0.00 33.05 3.96
3615 3991 3.543680 AATGCTACATACACGGAGCTT 57.456 42.857 0.00 0.00 35.89 3.74
3688 4064 1.342819 CTACCTCTGCACCTCTATGGC 59.657 57.143 0.00 0.00 40.22 4.40
3719 4095 5.698545 GCGAGGATCAGAAAGTAGCATATTT 59.301 40.000 0.00 0.00 33.17 1.40
3735 4111 4.492570 CGAATTACAACAACAGCGAGGATC 60.493 45.833 0.00 0.00 0.00 3.36
3741 4117 7.480229 TCATAATTTCGAATTACAACAACAGCG 59.520 33.333 0.00 0.00 0.00 5.18
3857 4233 6.016610 TGCCAAACTACCTTGAGTGTATTTTC 60.017 38.462 0.00 0.00 0.00 2.29
3906 4286 1.868469 ATTTCCCGTTTTGTCGACGA 58.132 45.000 11.62 6.16 42.82 4.20
3907 4287 3.429543 TCTTATTTCCCGTTTTGTCGACG 59.570 43.478 11.62 0.00 40.05 5.12
3908 4288 4.996062 TCTTATTTCCCGTTTTGTCGAC 57.004 40.909 9.11 9.11 0.00 4.20
3909 4289 5.277925 GGTTTCTTATTTCCCGTTTTGTCGA 60.278 40.000 0.00 0.00 0.00 4.20
3910 4290 4.913345 GGTTTCTTATTTCCCGTTTTGTCG 59.087 41.667 0.00 0.00 0.00 4.35
3911 4291 5.834169 TGGTTTCTTATTTCCCGTTTTGTC 58.166 37.500 0.00 0.00 0.00 3.18
3962 4342 8.908786 AGAATCAACAGAACAGAAGTTTATCA 57.091 30.769 0.00 0.00 38.30 2.15
3973 4353 7.993183 ACTAAAGGAAGAAGAATCAACAGAACA 59.007 33.333 0.00 0.00 0.00 3.18
4186 4566 5.155278 TCTCGCATGAAAACCTAAACCTA 57.845 39.130 0.00 0.00 0.00 3.08
4441 4821 2.360801 GCTCCTGGCAAACAACAAACTA 59.639 45.455 0.00 0.00 41.35 2.24
4495 4875 3.866883 ACTTCAAACAACTTGTGGGTG 57.133 42.857 0.00 0.00 38.87 4.61
4503 4883 9.705290 ACAGATTTACAAAAACTTCAAACAACT 57.295 25.926 0.00 0.00 0.00 3.16
4528 4908 5.766222 TCAGAGGACTACAAAAGTAACGAC 58.234 41.667 0.00 0.00 39.07 4.34
4533 4913 6.208007 TGTCGATTCAGAGGACTACAAAAGTA 59.792 38.462 0.00 0.00 39.07 2.24
4616 4996 4.392921 TCCAGCTTCTCTATAGTTGCAC 57.607 45.455 0.00 0.00 0.00 4.57
4626 5006 7.014988 AGAAACTATCTTTTCCAGCTTCTCT 57.985 36.000 0.00 0.00 36.31 3.10
4659 5039 5.347907 GGACAACTTGGAGACTTAATACGTG 59.652 44.000 0.00 0.00 0.00 4.49
4661 5041 4.561606 CGGACAACTTGGAGACTTAATACG 59.438 45.833 0.00 0.00 0.00 3.06
4662 5042 5.476614 ACGGACAACTTGGAGACTTAATAC 58.523 41.667 0.00 0.00 0.00 1.89
4663 5043 5.733620 ACGGACAACTTGGAGACTTAATA 57.266 39.130 0.00 0.00 0.00 0.98
4664 5044 4.618920 ACGGACAACTTGGAGACTTAAT 57.381 40.909 0.00 0.00 0.00 1.40
4666 5046 5.163426 TGTTTACGGACAACTTGGAGACTTA 60.163 40.000 0.00 0.00 0.00 2.24
4669 5049 3.460103 TGTTTACGGACAACTTGGAGAC 58.540 45.455 0.00 0.00 0.00 3.36
4718 5098 5.413523 GGTAAATTGGTACACACCTACAAGG 59.586 44.000 0.00 0.00 45.98 3.61
4719 5099 6.235664 AGGTAAATTGGTACACACCTACAAG 58.764 40.000 0.00 0.00 45.98 3.16
4720 5100 6.190346 AGGTAAATTGGTACACACCTACAA 57.810 37.500 0.00 0.00 45.98 2.41
4721 5101 5.829062 AGGTAAATTGGTACACACCTACA 57.171 39.130 0.00 0.00 45.98 2.74
4722 5102 7.160726 TGTTAGGTAAATTGGTACACACCTAC 58.839 38.462 0.00 0.00 45.98 3.18
4723 5103 7.016465 ACTGTTAGGTAAATTGGTACACACCTA 59.984 37.037 0.00 0.00 45.98 3.08
4724 5104 6.183361 ACTGTTAGGTAAATTGGTACACACCT 60.183 38.462 0.00 0.00 45.98 4.00
4725 5105 5.999600 ACTGTTAGGTAAATTGGTACACACC 59.000 40.000 0.00 0.00 46.00 4.16
4726 5106 6.567132 GCACTGTTAGGTAAATTGGTACACAC 60.567 42.308 0.00 0.00 39.29 3.82
4727 5107 5.470777 GCACTGTTAGGTAAATTGGTACACA 59.529 40.000 0.00 0.00 39.29 3.72
4728 5108 5.106436 GGCACTGTTAGGTAAATTGGTACAC 60.106 44.000 0.00 0.00 39.29 2.90
4729 5109 5.005094 GGCACTGTTAGGTAAATTGGTACA 58.995 41.667 0.00 0.00 0.00 2.90
4730 5110 5.005094 TGGCACTGTTAGGTAAATTGGTAC 58.995 41.667 0.00 0.00 0.00 3.34
4731 5111 5.013287 TCTGGCACTGTTAGGTAAATTGGTA 59.987 40.000 0.00 0.00 0.00 3.25
4732 5112 4.079253 CTGGCACTGTTAGGTAAATTGGT 58.921 43.478 0.00 0.00 0.00 3.67
4733 5113 4.156008 GTCTGGCACTGTTAGGTAAATTGG 59.844 45.833 0.00 0.00 0.00 3.16
4734 5114 4.142902 CGTCTGGCACTGTTAGGTAAATTG 60.143 45.833 0.00 0.00 0.00 2.32
4735 5115 4.000988 CGTCTGGCACTGTTAGGTAAATT 58.999 43.478 0.00 0.00 0.00 1.82
4736 5116 3.007614 ACGTCTGGCACTGTTAGGTAAAT 59.992 43.478 0.00 0.00 0.00 1.40
4737 5117 2.366266 ACGTCTGGCACTGTTAGGTAAA 59.634 45.455 0.00 0.00 0.00 2.01
4738 5118 1.965643 ACGTCTGGCACTGTTAGGTAA 59.034 47.619 0.00 0.00 0.00 2.85
4739 5119 1.624336 ACGTCTGGCACTGTTAGGTA 58.376 50.000 0.00 0.00 0.00 3.08
4740 5120 0.756903 AACGTCTGGCACTGTTAGGT 59.243 50.000 0.00 0.00 0.00 3.08
4741 5121 1.270094 TGAACGTCTGGCACTGTTAGG 60.270 52.381 0.00 0.00 0.00 2.69
4742 5122 2.061773 CTGAACGTCTGGCACTGTTAG 58.938 52.381 0.00 0.00 0.00 2.34
4743 5123 1.872237 GCTGAACGTCTGGCACTGTTA 60.872 52.381 0.00 0.00 0.00 2.41
4744 5124 1.160329 GCTGAACGTCTGGCACTGTT 61.160 55.000 0.00 0.00 0.00 3.16
4745 5125 1.595382 GCTGAACGTCTGGCACTGT 60.595 57.895 0.00 0.00 0.00 3.55
4746 5126 0.038251 TAGCTGAACGTCTGGCACTG 60.038 55.000 0.00 0.00 0.00 3.66
4747 5127 0.898320 ATAGCTGAACGTCTGGCACT 59.102 50.000 0.00 0.00 0.00 4.40
4748 5128 2.579207 TATAGCTGAACGTCTGGCAC 57.421 50.000 0.00 0.00 0.00 5.01
4749 5129 2.693074 TCATATAGCTGAACGTCTGGCA 59.307 45.455 0.00 0.00 0.00 4.92
4750 5130 3.371102 TCATATAGCTGAACGTCTGGC 57.629 47.619 0.00 0.00 0.00 4.85
4751 5131 5.352284 AGTTTCATATAGCTGAACGTCTGG 58.648 41.667 0.00 0.00 34.96 3.86
4752 5132 5.172232 CGAGTTTCATATAGCTGAACGTCTG 59.828 44.000 0.00 0.00 34.96 3.51
4753 5133 5.274718 CGAGTTTCATATAGCTGAACGTCT 58.725 41.667 0.00 0.00 34.96 4.18
4754 5134 4.441415 CCGAGTTTCATATAGCTGAACGTC 59.559 45.833 0.00 0.00 34.96 4.34
4755 5135 4.360563 CCGAGTTTCATATAGCTGAACGT 58.639 43.478 0.00 0.00 34.96 3.99
4756 5136 3.736252 CCCGAGTTTCATATAGCTGAACG 59.264 47.826 0.00 0.00 34.96 3.95
4757 5137 4.508124 CACCCGAGTTTCATATAGCTGAAC 59.492 45.833 0.00 0.00 34.96 3.18
4758 5138 4.404394 TCACCCGAGTTTCATATAGCTGAA 59.596 41.667 0.00 0.00 33.42 3.02
4759 5139 3.958147 TCACCCGAGTTTCATATAGCTGA 59.042 43.478 0.00 0.00 0.00 4.26
4760 5140 4.322080 TCACCCGAGTTTCATATAGCTG 57.678 45.455 0.00 0.00 0.00 4.24
4761 5141 4.161565 TGTTCACCCGAGTTTCATATAGCT 59.838 41.667 0.00 0.00 0.00 3.32
4762 5142 4.439057 TGTTCACCCGAGTTTCATATAGC 58.561 43.478 0.00 0.00 0.00 2.97
4763 5143 5.661458 ACTGTTCACCCGAGTTTCATATAG 58.339 41.667 0.00 0.00 0.00 1.31
4764 5144 5.670792 ACTGTTCACCCGAGTTTCATATA 57.329 39.130 0.00 0.00 0.00 0.86
4765 5145 4.553330 ACTGTTCACCCGAGTTTCATAT 57.447 40.909 0.00 0.00 0.00 1.78
4766 5146 5.471556 TTACTGTTCACCCGAGTTTCATA 57.528 39.130 0.00 0.00 0.00 2.15
4767 5147 2.930826 ACTGTTCACCCGAGTTTCAT 57.069 45.000 0.00 0.00 0.00 2.57
4768 5148 3.823281 TTACTGTTCACCCGAGTTTCA 57.177 42.857 0.00 0.00 0.00 2.69
4769 5149 4.554134 GCTTTTACTGTTCACCCGAGTTTC 60.554 45.833 0.00 0.00 0.00 2.78
4770 5150 3.314357 GCTTTTACTGTTCACCCGAGTTT 59.686 43.478 0.00 0.00 0.00 2.66
4771 5151 2.876550 GCTTTTACTGTTCACCCGAGTT 59.123 45.455 0.00 0.00 0.00 3.01
4772 5152 2.158871 TGCTTTTACTGTTCACCCGAGT 60.159 45.455 0.00 0.00 0.00 4.18
4773 5153 2.489971 TGCTTTTACTGTTCACCCGAG 58.510 47.619 0.00 0.00 0.00 4.63
4774 5154 2.623878 TGCTTTTACTGTTCACCCGA 57.376 45.000 0.00 0.00 0.00 5.14
4775 5155 5.365403 TTTATGCTTTTACTGTTCACCCG 57.635 39.130 0.00 0.00 0.00 5.28
4841 5221 7.421599 ACATATGTGAATGTTCGACACAAAAA 58.578 30.769 7.78 0.72 45.34 1.94
4842 5222 6.964908 ACATATGTGAATGTTCGACACAAAA 58.035 32.000 7.78 2.83 45.34 2.44
4843 5223 6.552859 ACATATGTGAATGTTCGACACAAA 57.447 33.333 7.78 0.00 45.34 2.83
4844 5224 6.552859 AACATATGTGAATGTTCGACACAA 57.447 33.333 9.63 1.58 44.79 3.33
4845 5225 6.552859 AAACATATGTGAATGTTCGACACA 57.447 33.333 9.63 8.08 46.72 3.72
4846 5226 7.075121 TCAAAACATATGTGAATGTTCGACAC 58.925 34.615 9.63 0.00 46.72 3.67
4847 5227 7.195839 TCAAAACATATGTGAATGTTCGACA 57.804 32.000 9.63 0.00 46.72 4.35
4848 5228 8.577939 CAATCAAAACATATGTGAATGTTCGAC 58.422 33.333 9.63 0.00 46.72 4.20
4849 5229 7.754475 CCAATCAAAACATATGTGAATGTTCGA 59.246 33.333 9.63 0.00 46.72 3.71
4850 5230 7.541783 ACCAATCAAAACATATGTGAATGTTCG 59.458 33.333 9.63 0.00 46.72 3.95
4851 5231 8.761575 ACCAATCAAAACATATGTGAATGTTC 57.238 30.769 9.63 0.00 46.72 3.18
4853 5233 7.118101 GCAACCAATCAAAACATATGTGAATGT 59.882 33.333 9.63 0.00 41.87 2.71
4854 5234 7.117956 TGCAACCAATCAAAACATATGTGAATG 59.882 33.333 9.63 9.04 0.00 2.67
4855 5235 7.160049 TGCAACCAATCAAAACATATGTGAAT 58.840 30.769 9.63 0.00 0.00 2.57
4856 5236 6.519382 TGCAACCAATCAAAACATATGTGAA 58.481 32.000 9.63 0.00 0.00 3.18
4857 5237 6.094193 TGCAACCAATCAAAACATATGTGA 57.906 33.333 9.63 2.87 0.00 3.58
4858 5238 6.782298 TTGCAACCAATCAAAACATATGTG 57.218 33.333 9.63 0.00 0.00 3.21
4859 5239 6.991531 ACTTTGCAACCAATCAAAACATATGT 59.008 30.769 1.41 1.41 32.55 2.29
4860 5240 7.424227 ACTTTGCAACCAATCAAAACATATG 57.576 32.000 0.00 0.00 32.55 1.78
4861 5241 8.449251 AAACTTTGCAACCAATCAAAACATAT 57.551 26.923 0.00 0.00 32.55 1.78
4862 5242 7.550551 TGAAACTTTGCAACCAATCAAAACATA 59.449 29.630 0.00 0.00 32.55 2.29
4863 5243 6.373774 TGAAACTTTGCAACCAATCAAAACAT 59.626 30.769 0.00 0.00 32.55 2.71
4864 5244 5.702670 TGAAACTTTGCAACCAATCAAAACA 59.297 32.000 0.00 0.00 32.55 2.83
4865 5245 6.175712 TGAAACTTTGCAACCAATCAAAAC 57.824 33.333 0.00 0.00 32.55 2.43
4866 5246 6.596888 TGATGAAACTTTGCAACCAATCAAAA 59.403 30.769 0.00 0.00 32.55 2.44
4867 5247 6.036953 GTGATGAAACTTTGCAACCAATCAAA 59.963 34.615 0.00 0.00 0.00 2.69
4868 5248 5.523188 GTGATGAAACTTTGCAACCAATCAA 59.477 36.000 0.00 0.00 0.00 2.57
4869 5249 5.049167 GTGATGAAACTTTGCAACCAATCA 58.951 37.500 0.00 2.47 0.00 2.57
4870 5250 4.148696 CGTGATGAAACTTTGCAACCAATC 59.851 41.667 0.00 0.00 0.00 2.67
4871 5251 4.050553 CGTGATGAAACTTTGCAACCAAT 58.949 39.130 0.00 0.00 0.00 3.16
4872 5252 3.129462 TCGTGATGAAACTTTGCAACCAA 59.871 39.130 0.00 0.00 0.00 3.67
4873 5253 2.685388 TCGTGATGAAACTTTGCAACCA 59.315 40.909 0.00 0.00 0.00 3.67
4874 5254 3.300009 CTCGTGATGAAACTTTGCAACC 58.700 45.455 0.00 0.00 0.00 3.77
4875 5255 3.243068 ACCTCGTGATGAAACTTTGCAAC 60.243 43.478 0.00 0.00 0.00 4.17
4876 5256 2.948979 ACCTCGTGATGAAACTTTGCAA 59.051 40.909 0.00 0.00 0.00 4.08
4877 5257 2.290367 CACCTCGTGATGAAACTTTGCA 59.710 45.455 0.00 0.00 35.23 4.08
4878 5258 2.548057 TCACCTCGTGATGAAACTTTGC 59.452 45.455 0.00 0.00 37.67 3.68
4879 5259 3.559655 TGTCACCTCGTGATGAAACTTTG 59.440 43.478 0.00 0.00 44.63 2.77
4880 5260 3.804036 TGTCACCTCGTGATGAAACTTT 58.196 40.909 0.00 0.00 44.63 2.66
4881 5261 3.469008 TGTCACCTCGTGATGAAACTT 57.531 42.857 0.00 0.00 44.63 2.66
4882 5262 3.685139 ATGTCACCTCGTGATGAAACT 57.315 42.857 0.00 0.00 44.63 2.66
4883 5263 3.745975 TGAATGTCACCTCGTGATGAAAC 59.254 43.478 0.00 0.00 44.63 2.78
4884 5264 4.001618 TGAATGTCACCTCGTGATGAAA 57.998 40.909 0.00 0.00 44.63 2.69
4885 5265 3.676291 TGAATGTCACCTCGTGATGAA 57.324 42.857 0.00 0.00 44.63 2.57
4886 5266 3.055891 ACATGAATGTCACCTCGTGATGA 60.056 43.478 0.00 0.00 44.63 2.92
4887 5267 3.264947 ACATGAATGTCACCTCGTGATG 58.735 45.455 0.00 0.00 44.63 3.07
4888 5268 3.616956 ACATGAATGTCACCTCGTGAT 57.383 42.857 0.00 0.00 44.63 3.06
4889 5269 4.529109 TTACATGAATGTCACCTCGTGA 57.471 40.909 0.00 0.00 41.97 4.35
4890 5270 5.382303 GTTTTACATGAATGTCACCTCGTG 58.618 41.667 0.00 4.97 41.97 4.35
4891 5271 4.151689 CGTTTTACATGAATGTCACCTCGT 59.848 41.667 0.00 0.00 41.97 4.18
4892 5272 4.151689 ACGTTTTACATGAATGTCACCTCG 59.848 41.667 0.00 3.50 41.97 4.63
4893 5273 5.382303 CACGTTTTACATGAATGTCACCTC 58.618 41.667 0.00 0.00 41.97 3.85
4894 5274 4.215399 CCACGTTTTACATGAATGTCACCT 59.785 41.667 0.00 0.00 41.97 4.00
4895 5275 4.472286 CCACGTTTTACATGAATGTCACC 58.528 43.478 0.00 0.00 41.97 4.02
4896 5276 3.911964 GCCACGTTTTACATGAATGTCAC 59.088 43.478 0.00 0.00 41.97 3.67
4897 5277 3.565902 TGCCACGTTTTACATGAATGTCA 59.434 39.130 0.00 0.00 41.97 3.58
4898 5278 4.153958 TGCCACGTTTTACATGAATGTC 57.846 40.909 0.00 0.00 41.97 3.06
4899 5279 4.277174 TCTTGCCACGTTTTACATGAATGT 59.723 37.500 0.00 0.95 44.48 2.71
4900 5280 4.793071 TCTTGCCACGTTTTACATGAATG 58.207 39.130 0.00 0.00 0.00 2.67
4901 5281 5.446143 TTCTTGCCACGTTTTACATGAAT 57.554 34.783 0.00 0.00 0.00 2.57
4902 5282 4.902443 TTCTTGCCACGTTTTACATGAA 57.098 36.364 0.00 0.00 0.00 2.57
4903 5283 4.902443 TTTCTTGCCACGTTTTACATGA 57.098 36.364 0.00 0.00 0.00 3.07
4904 5284 5.957910 TTTTTCTTGCCACGTTTTACATG 57.042 34.783 0.00 0.00 0.00 3.21
4905 5285 5.050431 GCATTTTTCTTGCCACGTTTTACAT 60.050 36.000 0.00 0.00 33.95 2.29
4906 5286 4.268884 GCATTTTTCTTGCCACGTTTTACA 59.731 37.500 0.00 0.00 33.95 2.41
4907 5287 4.506288 AGCATTTTTCTTGCCACGTTTTAC 59.494 37.500 0.00 0.00 41.06 2.01
4908 5288 4.688021 AGCATTTTTCTTGCCACGTTTTA 58.312 34.783 0.00 0.00 41.06 1.52
4909 5289 3.530535 AGCATTTTTCTTGCCACGTTTT 58.469 36.364 0.00 0.00 41.06 2.43
4910 5290 3.123050 GAGCATTTTTCTTGCCACGTTT 58.877 40.909 0.00 0.00 41.06 3.60
4911 5291 2.545742 GGAGCATTTTTCTTGCCACGTT 60.546 45.455 0.00 0.00 41.06 3.99
4912 5292 1.000274 GGAGCATTTTTCTTGCCACGT 60.000 47.619 0.00 0.00 41.06 4.49
4913 5293 1.000385 TGGAGCATTTTTCTTGCCACG 60.000 47.619 0.00 0.00 41.06 4.94
4914 5294 2.818130 TGGAGCATTTTTCTTGCCAC 57.182 45.000 0.00 0.00 41.06 5.01
4915 5295 3.834489 TTTGGAGCATTTTTCTTGCCA 57.166 38.095 0.00 0.00 41.06 4.92
4916 5296 4.614306 GCATTTTGGAGCATTTTTCTTGCC 60.614 41.667 0.00 0.00 41.06 4.52
4917 5297 4.023878 TGCATTTTGGAGCATTTTTCTTGC 60.024 37.500 0.00 0.00 40.45 4.01
4918 5298 5.676532 TGCATTTTGGAGCATTTTTCTTG 57.323 34.783 0.00 0.00 35.51 3.02
4927 5307 5.465532 TTTTGTCTATGCATTTTGGAGCA 57.534 34.783 3.54 0.00 45.92 4.26
4949 5329 5.989551 AGCATTTTTGAGCGTTGATTTTT 57.010 30.435 0.00 0.00 35.48 1.94
4950 5330 5.989551 AAGCATTTTTGAGCGTTGATTTT 57.010 30.435 0.00 0.00 35.48 1.82
4951 5331 5.989551 AAAGCATTTTTGAGCGTTGATTT 57.010 30.435 0.00 0.00 31.62 2.17
4966 5346 9.505995 CTTCAAAATGCAGTTTTTAAAAGCATT 57.494 25.926 23.06 23.06 45.58 3.56
4967 5347 7.644945 GCTTCAAAATGCAGTTTTTAAAAGCAT 59.355 29.630 25.14 16.31 41.36 3.79
4968 5348 6.966066 GCTTCAAAATGCAGTTTTTAAAAGCA 59.034 30.769 25.14 14.74 41.36 3.91
4969 5349 6.966066 TGCTTCAAAATGCAGTTTTTAAAAGC 59.034 30.769 24.24 24.24 41.66 3.51
4972 5352 9.539825 TCTATGCTTCAAAATGCAGTTTTTAAA 57.460 25.926 9.83 4.29 42.74 1.52
4973 5353 9.709495 ATCTATGCTTCAAAATGCAGTTTTTAA 57.291 25.926 9.83 6.69 42.74 1.52
4974 5354 9.709495 AATCTATGCTTCAAAATGCAGTTTTTA 57.291 25.926 9.83 0.00 42.74 1.52
4975 5355 8.611654 AATCTATGCTTCAAAATGCAGTTTTT 57.388 26.923 9.83 0.29 42.74 1.94
4976 5356 8.611654 AAATCTATGCTTCAAAATGCAGTTTT 57.388 26.923 9.83 5.32 42.74 2.43
4977 5357 8.500773 CAAAATCTATGCTTCAAAATGCAGTTT 58.499 29.630 6.26 6.26 42.74 2.66
4978 5358 7.658575 ACAAAATCTATGCTTCAAAATGCAGTT 59.341 29.630 0.00 0.00 42.74 3.16
4979 5359 7.156673 ACAAAATCTATGCTTCAAAATGCAGT 58.843 30.769 0.00 0.00 42.74 4.40
4980 5360 7.591006 ACAAAATCTATGCTTCAAAATGCAG 57.409 32.000 0.00 0.00 42.74 4.41
4981 5361 7.966246 AACAAAATCTATGCTTCAAAATGCA 57.034 28.000 0.00 0.00 43.67 3.96
4982 5362 9.667989 AAAAACAAAATCTATGCTTCAAAATGC 57.332 25.926 0.00 0.00 0.00 3.56
5005 5385 9.853555 GACATTCATATGAACACATGGTAAAAA 57.146 29.630 20.19 0.00 36.80 1.94
5006 5386 9.241919 AGACATTCATATGAACACATGGTAAAA 57.758 29.630 20.19 0.00 36.80 1.52
5007 5387 8.806429 AGACATTCATATGAACACATGGTAAA 57.194 30.769 20.19 0.00 36.80 2.01
5008 5388 8.676401 CAAGACATTCATATGAACACATGGTAA 58.324 33.333 20.19 0.00 36.80 2.85
5009 5389 7.201723 GCAAGACATTCATATGAACACATGGTA 60.202 37.037 20.19 0.00 36.80 3.25
5010 5390 6.405065 GCAAGACATTCATATGAACACATGGT 60.405 38.462 20.19 11.25 36.80 3.55
5011 5391 5.975344 GCAAGACATTCATATGAACACATGG 59.025 40.000 20.19 10.19 36.80 3.66
5012 5392 6.557110 TGCAAGACATTCATATGAACACATG 58.443 36.000 20.19 16.06 36.80 3.21
5013 5393 6.762702 TGCAAGACATTCATATGAACACAT 57.237 33.333 20.19 6.32 36.80 3.21
5014 5394 6.572167 TTGCAAGACATTCATATGAACACA 57.428 33.333 20.19 8.17 36.80 3.72
5015 5395 6.694411 GGATTGCAAGACATTCATATGAACAC 59.306 38.462 20.19 13.62 36.80 3.32
5016 5396 6.377712 TGGATTGCAAGACATTCATATGAACA 59.622 34.615 20.19 9.14 36.80 3.18
5017 5397 6.694411 GTGGATTGCAAGACATTCATATGAAC 59.306 38.462 20.19 8.24 36.80 3.18
5018 5398 6.604396 AGTGGATTGCAAGACATTCATATGAA 59.396 34.615 20.07 20.07 38.56 2.57
5019 5399 6.124340 AGTGGATTGCAAGACATTCATATGA 58.876 36.000 4.94 0.00 35.65 2.15
5020 5400 6.387041 AGTGGATTGCAAGACATTCATATG 57.613 37.500 4.94 0.00 37.79 1.78
5021 5401 8.523915 TTTAGTGGATTGCAAGACATTCATAT 57.476 30.769 4.94 0.00 31.53 1.78
5022 5402 7.936496 TTTAGTGGATTGCAAGACATTCATA 57.064 32.000 4.94 0.00 31.53 2.15
5023 5403 6.839124 TTTAGTGGATTGCAAGACATTCAT 57.161 33.333 4.94 0.00 31.53 2.57
5024 5404 6.839124 ATTTAGTGGATTGCAAGACATTCA 57.161 33.333 4.94 0.00 31.53 2.57
5025 5405 8.538409 AAAATTTAGTGGATTGCAAGACATTC 57.462 30.769 4.94 0.00 0.00 2.67
5026 5406 8.907222 AAAAATTTAGTGGATTGCAAGACATT 57.093 26.923 4.94 5.88 0.00 2.71
5054 5434 5.238868 TCGGATATTTTTGGTCAAACGTTGA 59.761 36.000 0.00 0.00 37.33 3.18
5055 5435 5.453648 TCGGATATTTTTGGTCAAACGTTG 58.546 37.500 0.00 0.00 0.00 4.10
5056 5436 5.692613 TCGGATATTTTTGGTCAAACGTT 57.307 34.783 0.00 0.00 0.00 3.99
5057 5437 5.890424 ATCGGATATTTTTGGTCAAACGT 57.110 34.783 0.00 0.00 0.00 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.