Multiple sequence alignment - TraesCS7B01G178100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G178100 chr7B 100.000 4358 0 0 1 4358 256169919 256174276 0.000000e+00 8048
1 TraesCS7B01G178100 chr7B 86.217 1422 129 35 767 2150 535688079 535689471 0.000000e+00 1478
2 TraesCS7B01G178100 chr7B 83.440 1093 112 42 813 1880 99106101 99105053 0.000000e+00 952
3 TraesCS7B01G178100 chr7B 84.224 786 84 22 2147 2922 535689523 535690278 0.000000e+00 728
4 TraesCS7B01G178100 chr7B 92.934 467 30 1 3 469 505337279 505336816 0.000000e+00 676
5 TraesCS7B01G178100 chr7B 85.191 628 81 11 64 685 706057684 706058305 6.150000e-178 634
6 TraesCS7B01G178100 chr7B 96.275 349 13 0 357 705 256165272 256165620 1.360000e-159 573
7 TraesCS7B01G178100 chr7B 96.855 159 3 2 4200 4358 412549360 412549516 9.290000e-67 265
8 TraesCS7B01G178100 chr7B 93.082 159 9 2 2966 3123 535690285 535690442 9.430000e-57 231
9 TraesCS7B01G178100 chr7B 92.908 141 9 1 699 839 256018613 256018752 2.050000e-48 204
10 TraesCS7B01G178100 chr7B 92.199 141 10 1 4218 4358 56884698 56884559 9.560000e-47 198
11 TraesCS7B01G178100 chr5B 93.844 2583 137 14 1102 3681 343721167 343723730 0.000000e+00 3869
12 TraesCS7B01G178100 chr5B 94.430 1131 40 10 3047 4173 343788561 343789672 0.000000e+00 1718
13 TraesCS7B01G178100 chr5B 81.974 699 103 21 6 696 38597544 38598227 4.890000e-159 571
14 TraesCS7B01G178100 chr5B 89.899 396 38 2 712 1107 343719060 343719453 3.890000e-140 508
15 TraesCS7B01G178100 chr5B 98.068 207 2 2 4138 4344 16706754 16706958 4.140000e-95 359
16 TraesCS7B01G178100 chr5B 99.010 101 1 0 4258 4358 16687135 16687235 9.630000e-42 182
17 TraesCS7B01G178100 chr7D 84.442 2436 215 76 767 3123 507244603 507246953 0.000000e+00 2248
18 TraesCS7B01G178100 chr7D 81.597 1190 152 44 1915 3060 136246504 136245338 0.000000e+00 922
19 TraesCS7B01G178100 chr7D 82.846 1061 97 39 813 1841 136248214 136247207 0.000000e+00 872
20 TraesCS7B01G178100 chr7A 84.096 2427 207 82 793 3123 577200981 577203324 0.000000e+00 2178
21 TraesCS7B01G178100 chr7A 83.364 1076 106 37 813 1850 135709027 135707987 0.000000e+00 928
22 TraesCS7B01G178100 chr1B 93.678 696 37 6 1 696 31052574 31051886 0.000000e+00 1035
23 TraesCS7B01G178100 chr1B 91.462 691 47 10 9 696 636119516 636118835 0.000000e+00 939
24 TraesCS7B01G178100 chr1B 92.754 138 9 1 4143 4280 127836974 127836838 9.560000e-47 198
25 TraesCS7B01G178100 chrUn 93.516 694 41 2 3 696 31706957 31706268 0.000000e+00 1029
26 TraesCS7B01G178100 chrUn 81.636 697 102 23 9 696 394033704 394033025 4.920000e-154 555
27 TraesCS7B01G178100 chr2D 84.799 671 83 15 6 670 521785240 521784583 0.000000e+00 656
28 TraesCS7B01G178100 chr2D 84.800 125 15 3 4236 4358 8074505 8074383 5.920000e-24 122
29 TraesCS7B01G178100 chr5D 92.257 452 31 4 3176 3627 206121957 206122404 4.750000e-179 638
30 TraesCS7B01G178100 chr5D 92.683 328 19 4 3817 4140 206123265 206123591 6.600000e-128 468
31 TraesCS7B01G178100 chr5D 94.012 167 10 0 3652 3818 206122551 206122717 2.010000e-63 254
32 TraesCS7B01G178100 chr5A 84.080 647 78 20 61 696 677494816 677494184 6.240000e-168 601
33 TraesCS7B01G178100 chr3B 86.729 535 67 4 3123 3655 481903915 481904447 3.750000e-165 592
34 TraesCS7B01G178100 chr3B 87.549 506 43 7 3652 4151 481904579 481905070 6.330000e-158 568
35 TraesCS7B01G178100 chr3B 92.029 138 10 1 4143 4280 823545261 823545125 4.450000e-45 193
36 TraesCS7B01G178100 chr3B 90.210 143 10 2 4138 4280 263678265 263678127 2.680000e-42 183
37 TraesCS7B01G178100 chr4B 94.842 349 15 3 1153 1501 603017892 603017547 3.830000e-150 542
38 TraesCS7B01G178100 chr4B 96.875 160 3 2 4199 4358 354905533 354905376 2.580000e-67 267
39 TraesCS7B01G178100 chr4B 93.617 141 7 2 4139 4279 192129846 192129708 4.420000e-50 209
40 TraesCS7B01G178100 chr4B 95.455 132 5 1 4149 4280 650621039 650621169 4.420000e-50 209
41 TraesCS7B01G178100 chr1A 93.983 349 18 3 1153 1501 250495062 250494717 3.860000e-145 525
42 TraesCS7B01G178100 chr6B 96.341 164 4 1 4195 4358 185994759 185994598 7.180000e-68 268
43 TraesCS7B01G178100 chr6B 86.730 211 17 8 4153 4358 264608662 264608458 1.580000e-54 224
44 TraesCS7B01G178100 chr2B 91.608 143 11 1 4216 4358 188003063 188003204 3.440000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G178100 chr7B 256169919 256174276 4357 False 8048.000000 8048 100.0000 1 4358 1 chr7B.!!$F3 4357
1 TraesCS7B01G178100 chr7B 99105053 99106101 1048 True 952.000000 952 83.4400 813 1880 1 chr7B.!!$R2 1067
2 TraesCS7B01G178100 chr7B 535688079 535690442 2363 False 812.333333 1478 87.8410 767 3123 3 chr7B.!!$F6 2356
3 TraesCS7B01G178100 chr7B 706057684 706058305 621 False 634.000000 634 85.1910 64 685 1 chr7B.!!$F5 621
4 TraesCS7B01G178100 chr5B 343719060 343723730 4670 False 2188.500000 3869 91.8715 712 3681 2 chr5B.!!$F5 2969
5 TraesCS7B01G178100 chr5B 343788561 343789672 1111 False 1718.000000 1718 94.4300 3047 4173 1 chr5B.!!$F4 1126
6 TraesCS7B01G178100 chr5B 38597544 38598227 683 False 571.000000 571 81.9740 6 696 1 chr5B.!!$F3 690
7 TraesCS7B01G178100 chr7D 507244603 507246953 2350 False 2248.000000 2248 84.4420 767 3123 1 chr7D.!!$F1 2356
8 TraesCS7B01G178100 chr7D 136245338 136248214 2876 True 897.000000 922 82.2215 813 3060 2 chr7D.!!$R1 2247
9 TraesCS7B01G178100 chr7A 577200981 577203324 2343 False 2178.000000 2178 84.0960 793 3123 1 chr7A.!!$F1 2330
10 TraesCS7B01G178100 chr7A 135707987 135709027 1040 True 928.000000 928 83.3640 813 1850 1 chr7A.!!$R1 1037
11 TraesCS7B01G178100 chr1B 31051886 31052574 688 True 1035.000000 1035 93.6780 1 696 1 chr1B.!!$R1 695
12 TraesCS7B01G178100 chr1B 636118835 636119516 681 True 939.000000 939 91.4620 9 696 1 chr1B.!!$R3 687
13 TraesCS7B01G178100 chrUn 31706268 31706957 689 True 1029.000000 1029 93.5160 3 696 1 chrUn.!!$R1 693
14 TraesCS7B01G178100 chrUn 394033025 394033704 679 True 555.000000 555 81.6360 9 696 1 chrUn.!!$R2 687
15 TraesCS7B01G178100 chr2D 521784583 521785240 657 True 656.000000 656 84.7990 6 670 1 chr2D.!!$R2 664
16 TraesCS7B01G178100 chr5D 206121957 206123591 1634 False 453.333333 638 92.9840 3176 4140 3 chr5D.!!$F1 964
17 TraesCS7B01G178100 chr5A 677494184 677494816 632 True 601.000000 601 84.0800 61 696 1 chr5A.!!$R1 635
18 TraesCS7B01G178100 chr3B 481903915 481905070 1155 False 580.000000 592 87.1390 3123 4151 2 chr3B.!!$F1 1028

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
508 519 0.030908 CTATCCAGTTCCTCGACCGC 59.969 60.0 0.0 0.0 0.00 5.68 F
658 669 0.107654 GGTTCGCCCTGTAGCTCATT 60.108 55.0 0.0 0.0 0.00 2.57 F
707 718 0.322648 TGCTGACATGGTCTCACTGG 59.677 55.0 0.0 0.0 33.15 4.00 F
708 719 0.610174 GCTGACATGGTCTCACTGGA 59.390 55.0 0.0 0.0 33.15 3.86 F
881 899 0.755686 CTGCTCTCCTATCCGCCTTT 59.244 55.0 0.0 0.0 0.00 3.11 F
1470 3239 0.811616 GGCGTATCTCACTGCCTTGG 60.812 60.0 0.0 0.0 41.05 3.61 F
1985 4430 1.026182 ATGTGCATGTGTACTGGGCG 61.026 55.0 0.0 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1448 3217 0.613260 AGGCAGTGAGATACGCCAAA 59.387 50.000 0.00 0.0 45.34 3.28 R
2520 5050 1.872237 GCACCAGTGTTCGCTTGACTA 60.872 52.381 0.00 0.0 0.00 2.59 R
2568 5103 4.178956 ACCAACCAACAAGTAGGTGAAT 57.821 40.909 0.00 0.0 36.95 2.57 R
2698 5239 7.394816 CATTTCTTTCCTAGAAGGACCTAACA 58.605 38.462 0.00 0.0 45.78 2.41 R
2766 5315 4.796606 AGGTATCAGCCAATGCAGTATTT 58.203 39.130 0.00 0.0 41.13 1.40 R
3223 5780 1.319541 GAGCATGCTGGCAAGATCAT 58.680 50.000 28.27 0.0 31.50 2.45 R
3789 6484 3.048600 CAGGAGGAATGGGATGGTTCTA 58.951 50.000 0.00 0.0 0.00 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.909141 GAGTTGTCGTCGGAGAGCGA 61.909 60.000 0.00 0.00 36.95 4.93
274 275 2.840038 ACATACTCTCCATGGCTTCACA 59.160 45.455 6.96 0.00 0.00 3.58
384 385 3.801114 ACGAATCACTCCAATCGATCA 57.199 42.857 0.00 0.00 38.59 2.92
393 394 9.650539 AATCACTCCAATCGATCAATCTATTAG 57.349 33.333 0.00 0.00 0.00 1.73
432 441 5.185635 TCCAGATTGCAAGGAATTCGAATTT 59.814 36.000 23.49 7.04 0.00 1.82
493 504 2.159170 GCCTCACGCCATCTATCCTATC 60.159 54.545 0.00 0.00 0.00 2.08
494 505 2.428890 CCTCACGCCATCTATCCTATCC 59.571 54.545 0.00 0.00 0.00 2.59
495 506 3.092301 CTCACGCCATCTATCCTATCCA 58.908 50.000 0.00 0.00 0.00 3.41
496 507 3.092301 TCACGCCATCTATCCTATCCAG 58.908 50.000 0.00 0.00 0.00 3.86
497 508 2.828520 CACGCCATCTATCCTATCCAGT 59.171 50.000 0.00 0.00 0.00 4.00
498 509 3.259374 CACGCCATCTATCCTATCCAGTT 59.741 47.826 0.00 0.00 0.00 3.16
499 510 3.511934 ACGCCATCTATCCTATCCAGTTC 59.488 47.826 0.00 0.00 0.00 3.01
500 511 3.118956 CGCCATCTATCCTATCCAGTTCC 60.119 52.174 0.00 0.00 0.00 3.62
501 512 4.100373 GCCATCTATCCTATCCAGTTCCT 58.900 47.826 0.00 0.00 0.00 3.36
502 513 4.161377 GCCATCTATCCTATCCAGTTCCTC 59.839 50.000 0.00 0.00 0.00 3.71
503 514 4.400884 CCATCTATCCTATCCAGTTCCTCG 59.599 50.000 0.00 0.00 0.00 4.63
504 515 4.995624 TCTATCCTATCCAGTTCCTCGA 57.004 45.455 0.00 0.00 0.00 4.04
505 516 4.653868 TCTATCCTATCCAGTTCCTCGAC 58.346 47.826 0.00 0.00 0.00 4.20
506 517 2.068834 TCCTATCCAGTTCCTCGACC 57.931 55.000 0.00 0.00 0.00 4.79
507 518 0.669077 CCTATCCAGTTCCTCGACCG 59.331 60.000 0.00 0.00 0.00 4.79
508 519 0.030908 CTATCCAGTTCCTCGACCGC 59.969 60.000 0.00 0.00 0.00 5.68
509 520 0.681887 TATCCAGTTCCTCGACCGCA 60.682 55.000 0.00 0.00 0.00 5.69
510 521 1.949847 ATCCAGTTCCTCGACCGCAG 61.950 60.000 0.00 0.00 0.00 5.18
511 522 2.811317 CAGTTCCTCGACCGCAGC 60.811 66.667 0.00 0.00 0.00 5.25
512 523 4.070552 AGTTCCTCGACCGCAGCC 62.071 66.667 0.00 0.00 0.00 4.85
528 539 4.676951 CCGCCACCACCACCCATT 62.677 66.667 0.00 0.00 0.00 3.16
529 540 2.353189 CGCCACCACCACCCATTA 59.647 61.111 0.00 0.00 0.00 1.90
530 541 2.043980 CGCCACCACCACCCATTAC 61.044 63.158 0.00 0.00 0.00 1.89
531 542 1.075836 GCCACCACCACCCATTACA 59.924 57.895 0.00 0.00 0.00 2.41
532 543 0.965363 GCCACCACCACCCATTACAG 60.965 60.000 0.00 0.00 0.00 2.74
533 544 0.404040 CCACCACCACCCATTACAGT 59.596 55.000 0.00 0.00 0.00 3.55
534 545 1.613255 CCACCACCACCCATTACAGTC 60.613 57.143 0.00 0.00 0.00 3.51
535 546 1.351017 CACCACCACCCATTACAGTCT 59.649 52.381 0.00 0.00 0.00 3.24
536 547 2.062636 ACCACCACCCATTACAGTCTT 58.937 47.619 0.00 0.00 0.00 3.01
537 548 2.039879 ACCACCACCCATTACAGTCTTC 59.960 50.000 0.00 0.00 0.00 2.87
538 549 2.305927 CCACCACCCATTACAGTCTTCT 59.694 50.000 0.00 0.00 0.00 2.85
539 550 3.517901 CCACCACCCATTACAGTCTTCTA 59.482 47.826 0.00 0.00 0.00 2.10
540 551 4.383118 CCACCACCCATTACAGTCTTCTAG 60.383 50.000 0.00 0.00 0.00 2.43
541 552 4.223032 CACCACCCATTACAGTCTTCTAGT 59.777 45.833 0.00 0.00 0.00 2.57
542 553 5.421056 CACCACCCATTACAGTCTTCTAGTA 59.579 44.000 0.00 0.00 0.00 1.82
543 554 5.421374 ACCACCCATTACAGTCTTCTAGTAC 59.579 44.000 0.00 0.00 0.00 2.73
544 555 5.421056 CCACCCATTACAGTCTTCTAGTACA 59.579 44.000 0.00 0.00 0.00 2.90
545 556 6.070995 CCACCCATTACAGTCTTCTAGTACAA 60.071 42.308 0.00 0.00 0.00 2.41
546 557 6.812160 CACCCATTACAGTCTTCTAGTACAAC 59.188 42.308 0.00 0.00 0.00 3.32
547 558 6.724905 ACCCATTACAGTCTTCTAGTACAACT 59.275 38.462 0.00 0.00 0.00 3.16
548 559 7.892241 ACCCATTACAGTCTTCTAGTACAACTA 59.108 37.037 0.00 0.00 0.00 2.24
549 560 8.746530 CCCATTACAGTCTTCTAGTACAACTAA 58.253 37.037 0.00 0.00 29.00 2.24
550 561 9.790389 CCATTACAGTCTTCTAGTACAACTAAG 57.210 37.037 0.00 0.00 29.00 2.18
555 566 9.001542 ACAGTCTTCTAGTACAACTAAGTAGTG 57.998 37.037 0.00 1.07 36.50 2.74
556 567 9.001542 CAGTCTTCTAGTACAACTAAGTAGTGT 57.998 37.037 0.00 0.00 36.50 3.55
557 568 9.571816 AGTCTTCTAGTACAACTAAGTAGTGTT 57.428 33.333 0.00 0.00 36.50 3.32
558 569 9.609950 GTCTTCTAGTACAACTAAGTAGTGTTG 57.390 37.037 0.00 0.00 46.19 3.33
559 570 8.790718 TCTTCTAGTACAACTAAGTAGTGTTGG 58.209 37.037 10.03 0.00 45.36 3.77
560 571 6.917533 TCTAGTACAACTAAGTAGTGTTGGC 58.082 40.000 10.03 3.63 45.36 4.52
561 572 5.803237 AGTACAACTAAGTAGTGTTGGCT 57.197 39.130 10.03 5.47 45.36 4.75
562 573 6.906157 AGTACAACTAAGTAGTGTTGGCTA 57.094 37.500 10.03 0.00 45.36 3.93
563 574 6.921914 AGTACAACTAAGTAGTGTTGGCTAG 58.078 40.000 10.03 0.00 45.36 3.42
564 575 4.566987 ACAACTAAGTAGTGTTGGCTAGC 58.433 43.478 6.04 6.04 45.36 3.42
565 576 3.505464 ACTAAGTAGTGTTGGCTAGCG 57.495 47.619 9.00 0.00 34.72 4.26
566 577 2.165845 ACTAAGTAGTGTTGGCTAGCGG 59.834 50.000 9.00 0.00 34.72 5.52
567 578 0.249398 AAGTAGTGTTGGCTAGCGGG 59.751 55.000 9.00 0.00 0.00 6.13
568 579 1.814169 GTAGTGTTGGCTAGCGGGC 60.814 63.158 9.00 1.29 41.27 6.13
575 586 3.878667 GGCTAGCGGGCCCATTCT 61.879 66.667 24.92 17.55 45.92 2.40
576 587 2.592861 GCTAGCGGGCCCATTCTG 60.593 66.667 24.92 5.81 0.00 3.02
577 588 2.111878 CTAGCGGGCCCATTCTGG 59.888 66.667 24.92 13.42 37.25 3.86
586 597 2.588877 CCATTCTGGGCCGCGTAG 60.589 66.667 4.92 0.00 32.67 3.51
587 598 2.499205 CATTCTGGGCCGCGTAGA 59.501 61.111 4.92 0.01 0.00 2.59
588 599 1.883084 CATTCTGGGCCGCGTAGAC 60.883 63.158 4.92 0.00 0.00 2.59
589 600 3.426117 ATTCTGGGCCGCGTAGACG 62.426 63.158 4.92 0.00 43.27 4.18
591 602 4.554363 CTGGGCCGCGTAGACGAG 62.554 72.222 4.92 2.05 43.02 4.18
597 608 4.592936 CGCGTAGACGAGCCGGAG 62.593 72.222 5.05 0.00 43.02 4.63
598 609 4.908877 GCGTAGACGAGCCGGAGC 62.909 72.222 5.05 0.00 43.02 4.70
599 610 4.253257 CGTAGACGAGCCGGAGCC 62.253 72.222 5.05 0.00 43.02 4.70
600 611 2.829458 GTAGACGAGCCGGAGCCT 60.829 66.667 5.05 0.00 41.25 4.58
601 612 2.829003 TAGACGAGCCGGAGCCTG 60.829 66.667 5.05 0.00 41.25 4.85
605 616 2.912542 CGAGCCGGAGCCTGGATA 60.913 66.667 5.05 0.00 41.25 2.59
606 617 2.737830 GAGCCGGAGCCTGGATAC 59.262 66.667 5.05 0.00 41.25 2.24
607 618 2.844839 AGCCGGAGCCTGGATACC 60.845 66.667 5.05 0.00 41.25 2.73
608 619 2.844839 GCCGGAGCCTGGATACCT 60.845 66.667 5.05 0.00 0.00 3.08
609 620 2.873525 GCCGGAGCCTGGATACCTC 61.874 68.421 5.05 0.00 0.00 3.85
610 621 1.152440 CCGGAGCCTGGATACCTCT 60.152 63.158 0.00 0.00 0.00 3.69
611 622 1.182385 CCGGAGCCTGGATACCTCTC 61.182 65.000 0.00 0.00 0.00 3.20
612 623 0.178975 CGGAGCCTGGATACCTCTCT 60.179 60.000 0.00 0.00 0.00 3.10
613 624 1.755977 CGGAGCCTGGATACCTCTCTT 60.756 57.143 0.00 0.00 0.00 2.85
614 625 1.691434 GGAGCCTGGATACCTCTCTTG 59.309 57.143 0.00 0.00 0.00 3.02
615 626 1.691434 GAGCCTGGATACCTCTCTTGG 59.309 57.143 0.00 0.00 0.00 3.61
616 627 0.761802 GCCTGGATACCTCTCTTGGG 59.238 60.000 0.00 0.00 0.00 4.12
617 628 0.761802 CCTGGATACCTCTCTTGGGC 59.238 60.000 0.00 0.00 0.00 5.36
618 629 0.761802 CTGGATACCTCTCTTGGGCC 59.238 60.000 0.00 0.00 0.00 5.80
619 630 0.343372 TGGATACCTCTCTTGGGCCT 59.657 55.000 4.53 0.00 0.00 5.19
620 631 0.761802 GGATACCTCTCTTGGGCCTG 59.238 60.000 4.53 0.00 0.00 4.85
621 632 0.761802 GATACCTCTCTTGGGCCTGG 59.238 60.000 4.53 0.00 0.00 4.45
622 633 1.348775 ATACCTCTCTTGGGCCTGGC 61.349 60.000 11.05 11.05 0.00 4.85
633 644 4.173924 GCCTGGCCTGCTCTCCTC 62.174 72.222 7.66 0.00 0.00 3.71
634 645 2.365370 CCTGGCCTGCTCTCCTCT 60.365 66.667 3.32 0.00 0.00 3.69
635 646 1.994507 CCTGGCCTGCTCTCCTCTT 60.995 63.158 3.32 0.00 0.00 2.85
636 647 1.221293 CTGGCCTGCTCTCCTCTTG 59.779 63.158 3.32 0.00 0.00 3.02
637 648 2.124778 GGCCTGCTCTCCTCTTGC 60.125 66.667 0.00 0.00 0.00 4.01
638 649 2.124778 GCCTGCTCTCCTCTTGCC 60.125 66.667 0.00 0.00 0.00 4.52
639 650 2.186384 CCTGCTCTCCTCTTGCCG 59.814 66.667 0.00 0.00 0.00 5.69
640 651 2.186384 CTGCTCTCCTCTTGCCGG 59.814 66.667 0.00 0.00 0.00 6.13
641 652 2.604686 TGCTCTCCTCTTGCCGGT 60.605 61.111 1.90 0.00 0.00 5.28
642 653 2.177594 CTGCTCTCCTCTTGCCGGTT 62.178 60.000 1.90 0.00 0.00 4.44
643 654 1.448717 GCTCTCCTCTTGCCGGTTC 60.449 63.158 1.90 0.00 0.00 3.62
644 655 1.153745 CTCTCCTCTTGCCGGTTCG 60.154 63.158 1.90 0.00 0.00 3.95
645 656 2.815647 CTCCTCTTGCCGGTTCGC 60.816 66.667 1.90 0.00 0.00 4.70
646 657 4.388499 TCCTCTTGCCGGTTCGCC 62.388 66.667 1.90 0.00 0.00 5.54
648 659 4.394712 CTCTTGCCGGTTCGCCCT 62.395 66.667 1.90 0.00 0.00 5.19
649 660 4.697756 TCTTGCCGGTTCGCCCTG 62.698 66.667 1.90 0.00 0.00 4.45
651 662 3.599285 CTTGCCGGTTCGCCCTGTA 62.599 63.158 1.90 0.00 0.00 2.74
652 663 3.599285 TTGCCGGTTCGCCCTGTAG 62.599 63.158 1.90 0.00 0.00 2.74
654 665 3.771160 CCGGTTCGCCCTGTAGCT 61.771 66.667 0.00 0.00 0.00 3.32
655 666 2.202756 CGGTTCGCCCTGTAGCTC 60.203 66.667 0.00 0.00 0.00 4.09
656 667 2.978824 GGTTCGCCCTGTAGCTCA 59.021 61.111 0.00 0.00 0.00 4.26
657 668 1.522569 GGTTCGCCCTGTAGCTCAT 59.477 57.895 0.00 0.00 0.00 2.90
658 669 0.107654 GGTTCGCCCTGTAGCTCATT 60.108 55.000 0.00 0.00 0.00 2.57
659 670 1.138266 GGTTCGCCCTGTAGCTCATTA 59.862 52.381 0.00 0.00 0.00 1.90
660 671 2.474816 GTTCGCCCTGTAGCTCATTAG 58.525 52.381 0.00 0.00 0.00 1.73
670 681 3.885777 GCTCATTAGCTGTTGTCGC 57.114 52.632 0.00 0.00 45.85 5.19
671 682 1.363744 GCTCATTAGCTGTTGTCGCT 58.636 50.000 0.00 0.00 45.85 4.93
672 683 1.061711 GCTCATTAGCTGTTGTCGCTG 59.938 52.381 0.00 0.00 45.85 5.18
673 684 2.341257 CTCATTAGCTGTTGTCGCTGT 58.659 47.619 0.00 0.00 38.38 4.40
674 685 2.738846 CTCATTAGCTGTTGTCGCTGTT 59.261 45.455 0.00 0.00 38.38 3.16
675 686 3.138304 TCATTAGCTGTTGTCGCTGTTT 58.862 40.909 0.00 0.00 38.38 2.83
676 687 3.186409 TCATTAGCTGTTGTCGCTGTTTC 59.814 43.478 0.00 0.00 38.38 2.78
677 688 2.232756 TAGCTGTTGTCGCTGTTTCA 57.767 45.000 0.00 0.00 38.38 2.69
678 689 1.378531 AGCTGTTGTCGCTGTTTCAA 58.621 45.000 0.00 0.00 36.15 2.69
679 690 1.064060 AGCTGTTGTCGCTGTTTCAAC 59.936 47.619 0.00 0.00 40.91 3.18
680 691 1.859998 GCTGTTGTCGCTGTTTCAACC 60.860 52.381 0.00 0.00 40.13 3.77
681 692 0.375454 TGTTGTCGCTGTTTCAACCG 59.625 50.000 0.00 0.00 40.13 4.44
682 693 0.375803 GTTGTCGCTGTTTCAACCGT 59.624 50.000 0.00 0.00 36.47 4.83
683 694 1.593933 GTTGTCGCTGTTTCAACCGTA 59.406 47.619 0.00 0.00 36.47 4.02
684 695 1.493772 TGTCGCTGTTTCAACCGTAG 58.506 50.000 0.00 0.00 0.00 3.51
698 709 3.352447 CGTAGGACTGCTGACATGG 57.648 57.895 0.00 0.00 0.00 3.66
699 710 0.532573 CGTAGGACTGCTGACATGGT 59.467 55.000 0.00 0.00 0.00 3.55
700 711 1.469940 CGTAGGACTGCTGACATGGTC 60.470 57.143 0.00 0.00 0.00 4.02
701 712 1.827969 GTAGGACTGCTGACATGGTCT 59.172 52.381 0.00 0.00 33.15 3.85
702 713 0.901124 AGGACTGCTGACATGGTCTC 59.099 55.000 0.00 0.00 33.15 3.36
703 714 0.610174 GGACTGCTGACATGGTCTCA 59.390 55.000 0.00 0.00 33.15 3.27
704 715 1.674221 GGACTGCTGACATGGTCTCAC 60.674 57.143 0.00 0.00 33.15 3.51
705 716 1.274728 GACTGCTGACATGGTCTCACT 59.725 52.381 0.00 0.00 33.15 3.41
706 717 1.001746 ACTGCTGACATGGTCTCACTG 59.998 52.381 0.00 0.00 33.15 3.66
707 718 0.322648 TGCTGACATGGTCTCACTGG 59.677 55.000 0.00 0.00 33.15 4.00
708 719 0.610174 GCTGACATGGTCTCACTGGA 59.390 55.000 0.00 0.00 33.15 3.86
709 720 1.209019 GCTGACATGGTCTCACTGGAT 59.791 52.381 0.00 0.00 33.15 3.41
710 721 2.355513 GCTGACATGGTCTCACTGGATT 60.356 50.000 0.00 0.00 33.15 3.01
716 727 1.021390 GGTCTCACTGGATTGGTGCG 61.021 60.000 0.00 0.00 34.97 5.34
717 728 1.021390 GTCTCACTGGATTGGTGCGG 61.021 60.000 0.00 0.00 34.97 5.69
736 747 2.978156 GGGGGAATATTGATGCTGGA 57.022 50.000 0.00 0.00 0.00 3.86
777 788 2.279784 CTTCATCGCTCGCTCCCC 60.280 66.667 0.00 0.00 0.00 4.81
788 799 2.659610 GCTCCCCCGCTATAGCAG 59.340 66.667 23.99 13.18 42.21 4.24
789 800 2.210711 GCTCCCCCGCTATAGCAGT 61.211 63.158 23.99 0.00 42.21 4.40
791 802 0.827925 CTCCCCCGCTATAGCAGTGA 60.828 60.000 23.99 12.91 42.21 3.41
854 872 4.368543 GTTTCCTCGCCGTCCCGT 62.369 66.667 0.00 0.00 0.00 5.28
881 899 0.755686 CTGCTCTCCTATCCGCCTTT 59.244 55.000 0.00 0.00 0.00 3.11
885 903 1.269998 CTCTCCTATCCGCCTTTACCG 59.730 57.143 0.00 0.00 0.00 4.02
935 969 3.750373 GATTCCTTGGCGGGCGCTA 62.750 63.158 7.64 0.00 41.60 4.26
959 993 3.442996 CGTCTTCTGGAAGCGGATT 57.557 52.632 14.47 0.00 38.28 3.01
1216 2971 1.874345 CGTCACCTACCTCAACGGCT 61.874 60.000 0.00 0.00 35.61 5.52
1222 2977 1.001764 TACCTCAACGGCTCCGAGA 60.002 57.895 15.95 11.00 42.83 4.04
1231 2986 2.188207 GCTCCGAGAAGGCCTTCC 59.812 66.667 36.59 26.91 40.33 3.46
1343 3111 3.319198 GGGAGAAGTGGCCCGTCA 61.319 66.667 0.00 0.00 34.00 4.35
1435 3204 3.857052 ACTTCACTTTCTGTCGAACACA 58.143 40.909 0.00 0.00 0.00 3.72
1470 3239 0.811616 GGCGTATCTCACTGCCTTGG 60.812 60.000 0.00 0.00 41.05 3.61
1557 3326 5.554070 TCAGCTTGTATATGTGATCATGGG 58.446 41.667 0.00 0.00 35.70 4.00
1560 3329 4.389992 GCTTGTATATGTGATCATGGGACG 59.610 45.833 0.00 0.00 35.70 4.79
1728 3514 4.917385 TGTAGCCTTGTACCATGTTTCAT 58.083 39.130 0.00 0.00 0.00 2.57
1810 3601 1.207089 CTGTCGGGTTTGATCTAGCCA 59.793 52.381 11.75 0.26 32.71 4.75
1985 4430 1.026182 ATGTGCATGTGTACTGGGCG 61.026 55.000 0.00 0.00 0.00 6.13
2245 4753 1.879796 GCTGGCGCTATGGATTTAGCT 60.880 52.381 7.64 0.00 41.99 3.32
2298 4809 8.423349 TCATTCAGAACATTGGAAGTGAAAAAT 58.577 29.630 0.00 0.00 0.00 1.82
2410 4936 1.559368 TGGCTGCATGCATTTTAGGT 58.441 45.000 22.97 0.00 45.15 3.08
2425 4951 8.686334 TGCATTTTAGGTATCATCCTTTCTTTC 58.314 33.333 0.00 0.00 38.86 2.62
2520 5050 5.191124 CCTTTACTCTTGGGTGTTATAGGGT 59.809 44.000 0.00 0.00 0.00 4.34
2537 5067 1.429463 GGTAGTCAAGCGAACACTGG 58.571 55.000 0.00 0.00 0.00 4.00
2539 5069 1.792949 GTAGTCAAGCGAACACTGGTG 59.207 52.381 0.00 0.00 0.00 4.17
2552 5085 1.267806 CACTGGTGCACCATTTGACTC 59.732 52.381 37.66 8.05 46.46 3.36
2666 5207 5.416639 TCATTGTTCCATGATTTGTCTGGAG 59.583 40.000 0.00 0.00 40.06 3.86
2698 5239 7.050970 TGTTTCACTACTACAGAGACATGTT 57.949 36.000 0.00 0.00 34.56 2.71
2785 5334 7.992608 TCTAAGAAAATACTGCATTGGCTGATA 59.007 33.333 0.00 0.00 41.06 2.15
2786 5335 6.382869 AGAAAATACTGCATTGGCTGATAC 57.617 37.500 0.00 0.00 41.06 2.24
2854 5406 1.701847 AGTCATCCTGCCTGTTCTGTT 59.298 47.619 0.00 0.00 0.00 3.16
3094 5651 4.546829 AATCAAGCATGGTTTCATTGCT 57.453 36.364 7.57 0.00 38.46 3.91
3154 5711 4.860802 ACTATGATGATGTTGGGTTCCA 57.139 40.909 0.00 0.00 0.00 3.53
3163 5720 4.408921 TGATGTTGGGTTCCATCTAGGTAG 59.591 45.833 0.00 0.00 38.59 3.18
3203 5760 2.743636 TCAGTGGATTTCTCGTGGAC 57.256 50.000 0.00 0.00 0.00 4.02
3223 5780 1.354368 CCAGGGAGAAAAAGGGTAGCA 59.646 52.381 0.00 0.00 0.00 3.49
3281 5838 3.737850 CAAGTGAGGAAGATATGAGGGC 58.262 50.000 0.00 0.00 0.00 5.19
3315 5872 7.202001 CCTGTTTTTCTATTTCCTCCCAACTTT 60.202 37.037 0.00 0.00 0.00 2.66
3417 5974 8.062448 GGCGAATGTACTTTGATTACTGATTAC 58.938 37.037 0.00 0.00 0.00 1.89
3615 6174 5.982356 TCTTCAGATATGTGCAGCTTACTT 58.018 37.500 0.00 0.00 0.00 2.24
3789 6484 5.449041 CGTATGGTCTGCTTGCATTTATGTT 60.449 40.000 0.00 0.00 0.00 2.71
3839 7083 7.941238 ACATTGCTCTTGATAGGTATTGCTTAT 59.059 33.333 0.00 0.00 0.00 1.73
3983 7232 1.344114 GGGCCTTTTTGTGCAATCTGA 59.656 47.619 0.84 0.00 0.00 3.27
4123 7374 1.610522 GCCTACCATTCCATCACATGC 59.389 52.381 0.00 0.00 0.00 4.06
4232 7483 7.120923 TGGGTGAGTCTATTCTAATAACACC 57.879 40.000 0.00 0.00 42.73 4.16
4234 7485 6.522946 GGTGAGTCTATTCTAATAACACCCC 58.477 44.000 0.00 0.00 39.17 4.95
4235 7486 6.326843 GGTGAGTCTATTCTAATAACACCCCT 59.673 42.308 0.00 0.00 39.17 4.79
4236 7487 7.147532 GGTGAGTCTATTCTAATAACACCCCTT 60.148 40.741 0.00 0.00 39.17 3.95
4237 7488 8.921205 GTGAGTCTATTCTAATAACACCCCTTA 58.079 37.037 0.00 0.00 0.00 2.69
4238 7489 9.496710 TGAGTCTATTCTAATAACACCCCTTAA 57.503 33.333 0.00 0.00 0.00 1.85
4239 7490 9.984190 GAGTCTATTCTAATAACACCCCTTAAG 57.016 37.037 0.00 0.00 0.00 1.85
4240 7491 9.725206 AGTCTATTCTAATAACACCCCTTAAGA 57.275 33.333 3.36 0.00 0.00 2.10
4241 7492 9.761504 GTCTATTCTAATAACACCCCTTAAGAC 57.238 37.037 3.36 0.00 0.00 3.01
4242 7493 8.931568 TCTATTCTAATAACACCCCTTAAGACC 58.068 37.037 3.36 0.00 0.00 3.85
4243 7494 7.766736 ATTCTAATAACACCCCTTAAGACCT 57.233 36.000 3.36 0.00 0.00 3.85
4244 7495 7.578458 TTCTAATAACACCCCTTAAGACCTT 57.422 36.000 3.36 0.00 0.00 3.50
4245 7496 8.683776 TTCTAATAACACCCCTTAAGACCTTA 57.316 34.615 3.36 0.00 0.00 2.69
4246 7497 8.865244 TCTAATAACACCCCTTAAGACCTTAT 57.135 34.615 3.36 0.00 0.00 1.73
4247 7498 9.287818 TCTAATAACACCCCTTAAGACCTTATT 57.712 33.333 3.36 6.47 0.00 1.40
4248 7499 9.557061 CTAATAACACCCCTTAAGACCTTATTC 57.443 37.037 3.36 0.00 0.00 1.75
4249 7500 7.766736 ATAACACCCCTTAAGACCTTATTCT 57.233 36.000 3.36 0.00 0.00 2.40
4250 7501 5.437191 ACACCCCTTAAGACCTTATTCTG 57.563 43.478 3.36 0.00 0.00 3.02
4251 7502 4.200092 CACCCCTTAAGACCTTATTCTGC 58.800 47.826 3.36 0.00 0.00 4.26
4252 7503 3.850173 ACCCCTTAAGACCTTATTCTGCA 59.150 43.478 3.36 0.00 0.00 4.41
4253 7504 4.200092 CCCCTTAAGACCTTATTCTGCAC 58.800 47.826 3.36 0.00 0.00 4.57
4254 7505 4.324254 CCCCTTAAGACCTTATTCTGCACA 60.324 45.833 3.36 0.00 0.00 4.57
4255 7506 4.636206 CCCTTAAGACCTTATTCTGCACAC 59.364 45.833 3.36 0.00 0.00 3.82
4256 7507 4.636206 CCTTAAGACCTTATTCTGCACACC 59.364 45.833 3.36 0.00 0.00 4.16
4257 7508 2.386661 AGACCTTATTCTGCACACCG 57.613 50.000 0.00 0.00 0.00 4.94
4258 7509 1.899814 AGACCTTATTCTGCACACCGA 59.100 47.619 0.00 0.00 0.00 4.69
4259 7510 2.301870 AGACCTTATTCTGCACACCGAA 59.698 45.455 0.00 0.00 0.00 4.30
4260 7511 3.071479 GACCTTATTCTGCACACCGAAA 58.929 45.455 0.00 0.00 0.00 3.46
4261 7512 2.812011 ACCTTATTCTGCACACCGAAAC 59.188 45.455 0.00 0.00 0.00 2.78
4262 7513 2.159707 CCTTATTCTGCACACCGAAACG 60.160 50.000 0.00 0.00 0.00 3.60
4263 7514 2.157834 TATTCTGCACACCGAAACGT 57.842 45.000 0.00 0.00 0.00 3.99
4264 7515 0.865769 ATTCTGCACACCGAAACGTC 59.134 50.000 0.00 0.00 0.00 4.34
4265 7516 0.179094 TTCTGCACACCGAAACGTCT 60.179 50.000 0.00 0.00 0.00 4.18
4266 7517 0.179094 TCTGCACACCGAAACGTCTT 60.179 50.000 0.00 0.00 0.00 3.01
4267 7518 1.067364 TCTGCACACCGAAACGTCTTA 59.933 47.619 0.00 0.00 0.00 2.10
4268 7519 2.066262 CTGCACACCGAAACGTCTTAT 58.934 47.619 0.00 0.00 0.00 1.73
4269 7520 2.478894 CTGCACACCGAAACGTCTTATT 59.521 45.455 0.00 0.00 0.00 1.40
4270 7521 2.477375 TGCACACCGAAACGTCTTATTC 59.523 45.455 0.00 0.00 0.00 1.75
4271 7522 2.735134 GCACACCGAAACGTCTTATTCT 59.265 45.455 0.00 0.00 0.00 2.40
4272 7523 3.423123 GCACACCGAAACGTCTTATTCTG 60.423 47.826 0.00 0.00 0.00 3.02
4273 7524 2.735134 ACACCGAAACGTCTTATTCTGC 59.265 45.455 0.00 0.00 0.00 4.26
4274 7525 2.993899 CACCGAAACGTCTTATTCTGCT 59.006 45.455 0.00 0.00 0.00 4.24
4275 7526 4.171005 CACCGAAACGTCTTATTCTGCTA 58.829 43.478 0.00 0.00 0.00 3.49
4276 7527 4.624024 CACCGAAACGTCTTATTCTGCTAA 59.376 41.667 0.00 0.00 0.00 3.09
4277 7528 4.624452 ACCGAAACGTCTTATTCTGCTAAC 59.376 41.667 0.00 0.00 0.00 2.34
4278 7529 4.624024 CCGAAACGTCTTATTCTGCTAACA 59.376 41.667 0.00 0.00 0.00 2.41
4279 7530 5.444218 CCGAAACGTCTTATTCTGCTAACAC 60.444 44.000 0.00 0.00 0.00 3.32
4280 7531 5.118050 CGAAACGTCTTATTCTGCTAACACA 59.882 40.000 0.00 0.00 0.00 3.72
4281 7532 6.346279 CGAAACGTCTTATTCTGCTAACACAA 60.346 38.462 0.00 0.00 0.00 3.33
4282 7533 6.854496 AACGTCTTATTCTGCTAACACAAA 57.146 33.333 0.00 0.00 0.00 2.83
4283 7534 6.854496 ACGTCTTATTCTGCTAACACAAAA 57.146 33.333 0.00 0.00 0.00 2.44
4284 7535 6.656003 ACGTCTTATTCTGCTAACACAAAAC 58.344 36.000 0.00 0.00 0.00 2.43
4285 7536 6.259167 ACGTCTTATTCTGCTAACACAAAACA 59.741 34.615 0.00 0.00 0.00 2.83
4286 7537 7.129622 CGTCTTATTCTGCTAACACAAAACAA 58.870 34.615 0.00 0.00 0.00 2.83
4287 7538 7.111593 CGTCTTATTCTGCTAACACAAAACAAC 59.888 37.037 0.00 0.00 0.00 3.32
4288 7539 7.378728 GTCTTATTCTGCTAACACAAAACAACC 59.621 37.037 0.00 0.00 0.00 3.77
4289 7540 3.684103 TCTGCTAACACAAAACAACCG 57.316 42.857 0.00 0.00 0.00 4.44
4290 7541 2.116366 CTGCTAACACAAAACAACCGC 58.884 47.619 0.00 0.00 0.00 5.68
4291 7542 1.472878 TGCTAACACAAAACAACCGCA 59.527 42.857 0.00 0.00 0.00 5.69
4292 7543 2.116366 GCTAACACAAAACAACCGCAG 58.884 47.619 0.00 0.00 0.00 5.18
4293 7544 2.116366 CTAACACAAAACAACCGCAGC 58.884 47.619 0.00 0.00 0.00 5.25
4294 7545 0.244994 AACACAAAACAACCGCAGCA 59.755 45.000 0.00 0.00 0.00 4.41
4295 7546 0.244994 ACACAAAACAACCGCAGCAA 59.755 45.000 0.00 0.00 0.00 3.91
4296 7547 1.337260 ACACAAAACAACCGCAGCAAA 60.337 42.857 0.00 0.00 0.00 3.68
4297 7548 1.728971 CACAAAACAACCGCAGCAAAA 59.271 42.857 0.00 0.00 0.00 2.44
4298 7549 2.158449 CACAAAACAACCGCAGCAAAAA 59.842 40.909 0.00 0.00 0.00 1.94
4299 7550 2.158645 ACAAAACAACCGCAGCAAAAAC 59.841 40.909 0.00 0.00 0.00 2.43
4300 7551 1.364721 AAACAACCGCAGCAAAAACC 58.635 45.000 0.00 0.00 0.00 3.27
4301 7552 0.461163 AACAACCGCAGCAAAAACCC 60.461 50.000 0.00 0.00 0.00 4.11
4302 7553 1.142748 CAACCGCAGCAAAAACCCA 59.857 52.632 0.00 0.00 0.00 4.51
4303 7554 1.142965 AACCGCAGCAAAAACCCAC 59.857 52.632 0.00 0.00 0.00 4.61
4304 7555 2.028925 CCGCAGCAAAAACCCACC 59.971 61.111 0.00 0.00 0.00 4.61
4305 7556 2.028925 CGCAGCAAAAACCCACCC 59.971 61.111 0.00 0.00 0.00 4.61
4306 7557 2.028925 GCAGCAAAAACCCACCCG 59.971 61.111 0.00 0.00 0.00 5.28
4307 7558 2.494530 GCAGCAAAAACCCACCCGA 61.495 57.895 0.00 0.00 0.00 5.14
4308 7559 2.022240 GCAGCAAAAACCCACCCGAA 62.022 55.000 0.00 0.00 0.00 4.30
4309 7560 0.249280 CAGCAAAAACCCACCCGAAC 60.249 55.000 0.00 0.00 0.00 3.95
4310 7561 1.068417 GCAAAAACCCACCCGAACC 59.932 57.895 0.00 0.00 0.00 3.62
4311 7562 1.677637 GCAAAAACCCACCCGAACCA 61.678 55.000 0.00 0.00 0.00 3.67
4312 7563 0.103390 CAAAAACCCACCCGAACCAC 59.897 55.000 0.00 0.00 0.00 4.16
4313 7564 0.324460 AAAAACCCACCCGAACCACA 60.324 50.000 0.00 0.00 0.00 4.17
4314 7565 0.105913 AAAACCCACCCGAACCACAT 60.106 50.000 0.00 0.00 0.00 3.21
4315 7566 0.825840 AAACCCACCCGAACCACATG 60.826 55.000 0.00 0.00 0.00 3.21
4316 7567 3.061848 CCCACCCGAACCACATGC 61.062 66.667 0.00 0.00 0.00 4.06
4317 7568 2.282110 CCACCCGAACCACATGCA 60.282 61.111 0.00 0.00 0.00 3.96
4318 7569 2.625823 CCACCCGAACCACATGCAC 61.626 63.158 0.00 0.00 0.00 4.57
4319 7570 1.896183 CACCCGAACCACATGCACA 60.896 57.895 0.00 0.00 0.00 4.57
4320 7571 1.896660 ACCCGAACCACATGCACAC 60.897 57.895 0.00 0.00 0.00 3.82
4321 7572 1.896183 CCCGAACCACATGCACACA 60.896 57.895 0.00 0.00 0.00 3.72
4322 7573 1.282570 CCGAACCACATGCACACAC 59.717 57.895 0.00 0.00 0.00 3.82
4323 7574 1.443322 CCGAACCACATGCACACACA 61.443 55.000 0.00 0.00 0.00 3.72
4324 7575 0.316937 CGAACCACATGCACACACAC 60.317 55.000 0.00 0.00 0.00 3.82
4325 7576 0.316937 GAACCACATGCACACACACG 60.317 55.000 0.00 0.00 0.00 4.49
4326 7577 2.051076 CCACATGCACACACACGC 60.051 61.111 0.00 0.00 0.00 5.34
4327 7578 2.714387 CACATGCACACACACGCA 59.286 55.556 0.00 0.00 43.45 5.24
4328 7579 1.369568 CACATGCACACACACGCAG 60.370 57.895 0.00 0.00 42.37 5.18
4329 7580 2.427905 CATGCACACACACGCAGC 60.428 61.111 0.00 0.00 42.37 5.25
4330 7581 3.663176 ATGCACACACACGCAGCC 61.663 61.111 0.00 0.00 42.37 4.85
4333 7584 3.952675 CACACACACGCAGCCCAC 61.953 66.667 0.00 0.00 0.00 4.61
4335 7586 4.935495 CACACACGCAGCCCACCT 62.935 66.667 0.00 0.00 0.00 4.00
4336 7587 4.189580 ACACACGCAGCCCACCTT 62.190 61.111 0.00 0.00 0.00 3.50
4337 7588 2.031919 CACACGCAGCCCACCTTA 59.968 61.111 0.00 0.00 0.00 2.69
4338 7589 1.377202 CACACGCAGCCCACCTTAT 60.377 57.895 0.00 0.00 0.00 1.73
4339 7590 0.960364 CACACGCAGCCCACCTTATT 60.960 55.000 0.00 0.00 0.00 1.40
4340 7591 0.676782 ACACGCAGCCCACCTTATTC 60.677 55.000 0.00 0.00 0.00 1.75
4341 7592 0.392998 CACGCAGCCCACCTTATTCT 60.393 55.000 0.00 0.00 0.00 2.40
4342 7593 0.328258 ACGCAGCCCACCTTATTCTT 59.672 50.000 0.00 0.00 0.00 2.52
4343 7594 1.271926 ACGCAGCCCACCTTATTCTTT 60.272 47.619 0.00 0.00 0.00 2.52
4344 7595 1.401905 CGCAGCCCACCTTATTCTTTC 59.598 52.381 0.00 0.00 0.00 2.62
4345 7596 2.446435 GCAGCCCACCTTATTCTTTCA 58.554 47.619 0.00 0.00 0.00 2.69
4346 7597 3.026694 GCAGCCCACCTTATTCTTTCAT 58.973 45.455 0.00 0.00 0.00 2.57
4347 7598 3.067320 GCAGCCCACCTTATTCTTTCATC 59.933 47.826 0.00 0.00 0.00 2.92
4348 7599 4.272489 CAGCCCACCTTATTCTTTCATCA 58.728 43.478 0.00 0.00 0.00 3.07
4349 7600 4.337555 CAGCCCACCTTATTCTTTCATCAG 59.662 45.833 0.00 0.00 0.00 2.90
4350 7601 4.228210 AGCCCACCTTATTCTTTCATCAGA 59.772 41.667 0.00 0.00 0.00 3.27
4351 7602 5.103771 AGCCCACCTTATTCTTTCATCAGAT 60.104 40.000 0.00 0.00 0.00 2.90
4352 7603 5.240403 GCCCACCTTATTCTTTCATCAGATC 59.760 44.000 0.00 0.00 0.00 2.75
4353 7604 6.359804 CCCACCTTATTCTTTCATCAGATCA 58.640 40.000 0.00 0.00 0.00 2.92
4354 7605 6.830324 CCCACCTTATTCTTTCATCAGATCAA 59.170 38.462 0.00 0.00 0.00 2.57
4355 7606 7.201767 CCCACCTTATTCTTTCATCAGATCAAC 60.202 40.741 0.00 0.00 0.00 3.18
4356 7607 7.337689 CCACCTTATTCTTTCATCAGATCAACA 59.662 37.037 0.00 0.00 0.00 3.33
4357 7608 8.180267 CACCTTATTCTTTCATCAGATCAACAC 58.820 37.037 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.001706 CTCTCCGACGACAACTCACAA 60.002 52.381 0.00 0.00 0.00 3.33
282 283 2.506217 GACGAGATTCACGGCGCA 60.506 61.111 10.83 0.00 34.93 6.09
432 441 0.043334 CTTCCTCCTCCTCCTTCCCA 59.957 60.000 0.00 0.00 0.00 4.37
493 504 2.125912 CTGCGGTCGAGGAACTGG 60.126 66.667 0.00 0.00 41.55 4.00
494 505 2.811317 GCTGCGGTCGAGGAACTG 60.811 66.667 0.00 0.00 41.55 3.16
511 522 3.275214 TAATGGGTGGTGGTGGCGG 62.275 63.158 0.00 0.00 0.00 6.13
512 523 2.043980 GTAATGGGTGGTGGTGGCG 61.044 63.158 0.00 0.00 0.00 5.69
513 524 0.965363 CTGTAATGGGTGGTGGTGGC 60.965 60.000 0.00 0.00 0.00 5.01
514 525 0.404040 ACTGTAATGGGTGGTGGTGG 59.596 55.000 0.00 0.00 0.00 4.61
515 526 1.351017 AGACTGTAATGGGTGGTGGTG 59.649 52.381 0.00 0.00 0.00 4.17
516 527 1.742308 AGACTGTAATGGGTGGTGGT 58.258 50.000 0.00 0.00 0.00 4.16
517 528 2.305927 AGAAGACTGTAATGGGTGGTGG 59.694 50.000 0.00 0.00 0.00 4.61
518 529 3.703001 AGAAGACTGTAATGGGTGGTG 57.297 47.619 0.00 0.00 0.00 4.17
519 530 4.426704 ACTAGAAGACTGTAATGGGTGGT 58.573 43.478 0.00 0.00 0.00 4.16
520 531 5.421056 TGTACTAGAAGACTGTAATGGGTGG 59.579 44.000 0.00 0.00 0.00 4.61
521 532 6.525578 TGTACTAGAAGACTGTAATGGGTG 57.474 41.667 0.00 0.00 0.00 4.61
522 533 6.724905 AGTTGTACTAGAAGACTGTAATGGGT 59.275 38.462 0.00 0.00 0.00 4.51
523 534 7.171630 AGTTGTACTAGAAGACTGTAATGGG 57.828 40.000 0.00 0.00 0.00 4.00
524 535 9.790389 CTTAGTTGTACTAGAAGACTGTAATGG 57.210 37.037 0.00 0.00 31.47 3.16
529 540 9.001542 CACTACTTAGTTGTACTAGAAGACTGT 57.998 37.037 0.00 0.00 33.46 3.55
530 541 9.001542 ACACTACTTAGTTGTACTAGAAGACTG 57.998 37.037 0.00 0.00 33.46 3.51
531 542 9.571816 AACACTACTTAGTTGTACTAGAAGACT 57.428 33.333 0.00 0.00 33.46 3.24
532 543 9.609950 CAACACTACTTAGTTGTACTAGAAGAC 57.390 37.037 0.00 0.00 40.06 3.01
533 544 8.790718 CCAACACTACTTAGTTGTACTAGAAGA 58.209 37.037 0.00 0.00 42.62 2.87
534 545 7.541437 GCCAACACTACTTAGTTGTACTAGAAG 59.459 40.741 0.00 0.00 42.62 2.85
535 546 7.232127 AGCCAACACTACTTAGTTGTACTAGAA 59.768 37.037 0.00 0.00 42.62 2.10
536 547 6.718454 AGCCAACACTACTTAGTTGTACTAGA 59.282 38.462 0.00 0.00 42.62 2.43
537 548 6.921914 AGCCAACACTACTTAGTTGTACTAG 58.078 40.000 0.00 0.00 42.62 2.57
538 549 6.906157 AGCCAACACTACTTAGTTGTACTA 57.094 37.500 0.00 0.00 42.62 1.82
539 550 5.803237 AGCCAACACTACTTAGTTGTACT 57.197 39.130 0.00 0.00 42.62 2.73
540 551 5.575995 GCTAGCCAACACTACTTAGTTGTAC 59.424 44.000 2.29 0.00 42.62 2.90
541 552 5.620654 CGCTAGCCAACACTACTTAGTTGTA 60.621 44.000 9.66 0.00 42.62 2.41
542 553 4.566987 GCTAGCCAACACTACTTAGTTGT 58.433 43.478 2.29 0.00 42.62 3.32
543 554 3.612860 CGCTAGCCAACACTACTTAGTTG 59.387 47.826 9.66 0.00 43.51 3.16
544 555 3.368116 CCGCTAGCCAACACTACTTAGTT 60.368 47.826 9.66 0.00 33.46 2.24
545 556 2.165845 CCGCTAGCCAACACTACTTAGT 59.834 50.000 9.66 0.00 36.90 2.24
546 557 2.481449 CCCGCTAGCCAACACTACTTAG 60.481 54.545 9.66 0.00 0.00 2.18
547 558 1.479323 CCCGCTAGCCAACACTACTTA 59.521 52.381 9.66 0.00 0.00 2.24
548 559 0.249398 CCCGCTAGCCAACACTACTT 59.751 55.000 9.66 0.00 0.00 2.24
549 560 1.898154 CCCGCTAGCCAACACTACT 59.102 57.895 9.66 0.00 0.00 2.57
550 561 1.814169 GCCCGCTAGCCAACACTAC 60.814 63.158 9.66 0.00 0.00 2.73
551 562 2.582436 GCCCGCTAGCCAACACTA 59.418 61.111 9.66 0.00 0.00 2.74
559 570 2.592861 CAGAATGGGCCCGCTAGC 60.593 66.667 19.37 4.06 0.00 3.42
570 581 1.883084 GTCTACGCGGCCCAGAATG 60.883 63.158 12.47 0.00 0.00 2.67
571 582 2.499685 GTCTACGCGGCCCAGAAT 59.500 61.111 12.47 0.00 0.00 2.40
572 583 4.124351 CGTCTACGCGGCCCAGAA 62.124 66.667 12.47 0.00 0.00 3.02
574 585 4.554363 CTCGTCTACGCGGCCCAG 62.554 72.222 12.47 1.61 39.60 4.45
580 591 4.592936 CTCCGGCTCGTCTACGCG 62.593 72.222 3.53 3.53 39.60 6.01
581 592 4.908877 GCTCCGGCTCGTCTACGC 62.909 72.222 0.00 0.00 39.60 4.42
582 593 4.253257 GGCTCCGGCTCGTCTACG 62.253 72.222 0.00 0.00 38.73 3.51
583 594 2.829458 AGGCTCCGGCTCGTCTAC 60.829 66.667 0.00 0.00 38.73 2.59
584 595 2.829003 CAGGCTCCGGCTCGTCTA 60.829 66.667 0.00 0.00 35.88 2.59
587 598 3.733507 TATCCAGGCTCCGGCTCGT 62.734 63.158 0.00 0.00 35.88 4.18
588 599 2.912542 TATCCAGGCTCCGGCTCG 60.913 66.667 0.00 0.00 35.88 5.03
589 600 2.737830 GTATCCAGGCTCCGGCTC 59.262 66.667 0.00 0.00 35.88 4.70
590 601 2.844839 GGTATCCAGGCTCCGGCT 60.845 66.667 0.00 0.00 39.66 5.52
591 602 2.844839 AGGTATCCAGGCTCCGGC 60.845 66.667 0.00 0.00 37.82 6.13
592 603 1.152440 AGAGGTATCCAGGCTCCGG 60.152 63.158 0.00 0.00 0.00 5.14
593 604 0.178975 AGAGAGGTATCCAGGCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
594 605 1.691434 CAAGAGAGGTATCCAGGCTCC 59.309 57.143 0.00 0.00 0.00 4.70
595 606 1.691434 CCAAGAGAGGTATCCAGGCTC 59.309 57.143 0.00 0.00 0.00 4.70
596 607 1.694048 CCCAAGAGAGGTATCCAGGCT 60.694 57.143 0.00 0.00 0.00 4.58
597 608 0.761802 CCCAAGAGAGGTATCCAGGC 59.238 60.000 0.00 0.00 0.00 4.85
598 609 0.761802 GCCCAAGAGAGGTATCCAGG 59.238 60.000 0.00 0.00 0.00 4.45
599 610 0.761802 GGCCCAAGAGAGGTATCCAG 59.238 60.000 0.00 0.00 0.00 3.86
600 611 0.343372 AGGCCCAAGAGAGGTATCCA 59.657 55.000 0.00 0.00 0.00 3.41
601 612 0.761802 CAGGCCCAAGAGAGGTATCC 59.238 60.000 0.00 0.00 0.00 2.59
602 613 0.761802 CCAGGCCCAAGAGAGGTATC 59.238 60.000 0.00 0.00 0.00 2.24
603 614 1.348775 GCCAGGCCCAAGAGAGGTAT 61.349 60.000 0.00 0.00 0.00 2.73
604 615 1.995626 GCCAGGCCCAAGAGAGGTA 60.996 63.158 0.00 0.00 0.00 3.08
605 616 3.334054 GCCAGGCCCAAGAGAGGT 61.334 66.667 0.00 0.00 0.00 3.85
606 617 4.120755 GGCCAGGCCCAAGAGAGG 62.121 72.222 21.62 0.00 44.06 3.69
616 627 4.173924 GAGGAGAGCAGGCCAGGC 62.174 72.222 5.01 8.72 0.00 4.85
617 628 1.994507 AAGAGGAGAGCAGGCCAGG 60.995 63.158 5.01 0.00 0.00 4.45
618 629 1.221293 CAAGAGGAGAGCAGGCCAG 59.779 63.158 5.01 0.00 0.00 4.85
619 630 2.964310 GCAAGAGGAGAGCAGGCCA 61.964 63.158 5.01 0.00 0.00 5.36
620 631 2.124778 GCAAGAGGAGAGCAGGCC 60.125 66.667 0.00 0.00 0.00 5.19
621 632 2.124778 GGCAAGAGGAGAGCAGGC 60.125 66.667 0.00 0.00 0.00 4.85
622 633 2.186384 CGGCAAGAGGAGAGCAGG 59.814 66.667 0.00 0.00 0.00 4.85
623 634 2.177594 AACCGGCAAGAGGAGAGCAG 62.178 60.000 0.00 0.00 0.00 4.24
624 635 2.172483 GAACCGGCAAGAGGAGAGCA 62.172 60.000 0.00 0.00 0.00 4.26
625 636 1.448717 GAACCGGCAAGAGGAGAGC 60.449 63.158 0.00 0.00 0.00 4.09
626 637 1.153745 CGAACCGGCAAGAGGAGAG 60.154 63.158 0.00 0.00 0.00 3.20
627 638 2.970639 CGAACCGGCAAGAGGAGA 59.029 61.111 0.00 0.00 0.00 3.71
628 639 2.815647 GCGAACCGGCAAGAGGAG 60.816 66.667 0.00 0.00 0.00 3.69
637 648 3.718210 GAGCTACAGGGCGAACCGG 62.718 68.421 0.00 0.00 46.96 5.28
638 649 2.202756 GAGCTACAGGGCGAACCG 60.203 66.667 0.00 0.00 46.96 4.44
639 650 0.107654 AATGAGCTACAGGGCGAACC 60.108 55.000 0.00 0.00 40.67 3.62
640 651 2.474816 CTAATGAGCTACAGGGCGAAC 58.525 52.381 0.00 0.00 37.29 3.95
641 652 1.202533 GCTAATGAGCTACAGGGCGAA 60.203 52.381 0.00 0.00 45.98 4.70
642 653 0.389391 GCTAATGAGCTACAGGGCGA 59.611 55.000 0.00 0.00 45.98 5.54
643 654 2.906047 GCTAATGAGCTACAGGGCG 58.094 57.895 0.00 0.00 45.98 6.13
653 664 2.341257 ACAGCGACAACAGCTAATGAG 58.659 47.619 5.02 0.79 44.06 2.90
654 665 2.455674 ACAGCGACAACAGCTAATGA 57.544 45.000 5.02 0.00 44.06 2.57
655 666 3.058983 TGAAACAGCGACAACAGCTAATG 60.059 43.478 0.00 0.00 44.06 1.90
656 667 3.138304 TGAAACAGCGACAACAGCTAAT 58.862 40.909 0.00 0.00 44.06 1.73
657 668 2.556257 TGAAACAGCGACAACAGCTAA 58.444 42.857 0.00 0.00 44.06 3.09
658 669 2.232756 TGAAACAGCGACAACAGCTA 57.767 45.000 0.00 0.00 44.06 3.32
660 671 1.466855 GTTGAAACAGCGACAACAGC 58.533 50.000 0.00 0.00 42.00 4.40
661 672 1.594518 CGGTTGAAACAGCGACAACAG 60.595 52.381 0.00 0.00 43.51 3.16
662 673 0.375454 CGGTTGAAACAGCGACAACA 59.625 50.000 0.00 0.00 43.51 3.33
663 674 0.375803 ACGGTTGAAACAGCGACAAC 59.624 50.000 0.00 0.00 40.13 3.32
664 675 1.862201 CTACGGTTGAAACAGCGACAA 59.138 47.619 0.00 0.00 40.13 3.18
665 676 1.493772 CTACGGTTGAAACAGCGACA 58.506 50.000 0.00 0.00 40.13 4.35
666 677 0.788391 CCTACGGTTGAAACAGCGAC 59.212 55.000 0.00 0.00 40.13 5.19
667 678 0.675083 TCCTACGGTTGAAACAGCGA 59.325 50.000 0.00 0.00 40.13 4.93
668 679 0.788391 GTCCTACGGTTGAAACAGCG 59.212 55.000 0.00 0.00 43.37 5.18
669 680 1.798813 CAGTCCTACGGTTGAAACAGC 59.201 52.381 0.00 0.00 0.00 4.40
670 681 1.798813 GCAGTCCTACGGTTGAAACAG 59.201 52.381 0.00 0.00 0.00 3.16
671 682 1.414919 AGCAGTCCTACGGTTGAAACA 59.585 47.619 0.00 0.00 0.00 2.83
672 683 1.798813 CAGCAGTCCTACGGTTGAAAC 59.201 52.381 0.00 0.00 27.06 2.78
673 684 1.689813 TCAGCAGTCCTACGGTTGAAA 59.310 47.619 0.00 0.00 31.71 2.69
674 685 1.000506 GTCAGCAGTCCTACGGTTGAA 59.999 52.381 0.00 0.00 35.68 2.69
675 686 0.601558 GTCAGCAGTCCTACGGTTGA 59.398 55.000 0.00 0.00 32.12 3.18
676 687 0.317160 TGTCAGCAGTCCTACGGTTG 59.683 55.000 0.00 0.00 0.00 3.77
677 688 1.066858 CATGTCAGCAGTCCTACGGTT 60.067 52.381 0.00 0.00 0.00 4.44
678 689 0.532573 CATGTCAGCAGTCCTACGGT 59.467 55.000 0.00 0.00 0.00 4.83
679 690 0.179100 CCATGTCAGCAGTCCTACGG 60.179 60.000 0.00 0.00 0.00 4.02
680 691 0.532573 ACCATGTCAGCAGTCCTACG 59.467 55.000 0.00 0.00 0.00 3.51
681 692 1.827969 AGACCATGTCAGCAGTCCTAC 59.172 52.381 0.00 0.00 34.60 3.18
682 693 2.103373 GAGACCATGTCAGCAGTCCTA 58.897 52.381 0.00 0.00 34.60 2.94
683 694 0.901124 GAGACCATGTCAGCAGTCCT 59.099 55.000 0.00 0.00 34.60 3.85
684 695 0.610174 TGAGACCATGTCAGCAGTCC 59.390 55.000 0.00 0.00 34.60 3.85
685 696 1.274728 AGTGAGACCATGTCAGCAGTC 59.725 52.381 0.00 0.00 34.60 3.51
686 697 1.001746 CAGTGAGACCATGTCAGCAGT 59.998 52.381 0.00 0.00 34.60 4.40
687 698 1.675116 CCAGTGAGACCATGTCAGCAG 60.675 57.143 0.00 0.00 34.60 4.24
688 699 0.322648 CCAGTGAGACCATGTCAGCA 59.677 55.000 0.00 0.00 34.60 4.41
689 700 0.610174 TCCAGTGAGACCATGTCAGC 59.390 55.000 0.00 0.00 34.60 4.26
690 701 3.268330 CAATCCAGTGAGACCATGTCAG 58.732 50.000 0.00 0.00 34.60 3.51
691 702 2.026915 CCAATCCAGTGAGACCATGTCA 60.027 50.000 0.00 0.00 34.60 3.58
692 703 2.026822 ACCAATCCAGTGAGACCATGTC 60.027 50.000 0.00 0.00 0.00 3.06
693 704 1.988107 ACCAATCCAGTGAGACCATGT 59.012 47.619 0.00 0.00 0.00 3.21
694 705 2.362736 CACCAATCCAGTGAGACCATG 58.637 52.381 0.00 0.00 37.42 3.66
695 706 1.340405 GCACCAATCCAGTGAGACCAT 60.340 52.381 0.00 0.00 37.42 3.55
696 707 0.036732 GCACCAATCCAGTGAGACCA 59.963 55.000 0.00 0.00 37.42 4.02
697 708 1.021390 CGCACCAATCCAGTGAGACC 61.021 60.000 0.00 0.00 37.22 3.85
698 709 1.021390 CCGCACCAATCCAGTGAGAC 61.021 60.000 0.00 0.00 37.22 3.36
699 710 1.296392 CCGCACCAATCCAGTGAGA 59.704 57.895 0.00 0.00 37.22 3.27
700 711 1.746615 CCCGCACCAATCCAGTGAG 60.747 63.158 0.00 0.00 37.42 3.51
701 712 2.350895 CCCGCACCAATCCAGTGA 59.649 61.111 0.00 0.00 37.42 3.41
702 713 2.751436 CCCCGCACCAATCCAGTG 60.751 66.667 0.00 0.00 38.30 3.66
703 714 4.047125 CCCCCGCACCAATCCAGT 62.047 66.667 0.00 0.00 0.00 4.00
717 728 2.978156 TCCAGCATCAATATTCCCCC 57.022 50.000 0.00 0.00 0.00 5.40
854 872 0.979709 ATAGGAGAGCAGCAGTGGCA 60.980 55.000 0.00 0.00 44.61 4.92
860 878 2.502492 GGCGGATAGGAGAGCAGCA 61.502 63.158 0.00 0.00 36.24 4.41
907 925 1.813477 GCCAAGGAATCCTAGAGCAGC 60.813 57.143 0.46 0.00 31.13 5.25
935 969 2.920912 TTCCAGAAGACGGGCCGT 60.921 61.111 34.81 34.81 45.10 5.68
997 1033 2.886523 TGGACAGGAACTTGAGCATTTG 59.113 45.455 0.00 0.00 34.60 2.32
1216 2971 2.283676 ACGGAAGGCCTTCTCGGA 60.284 61.111 37.21 0.00 39.45 4.55
1343 3111 1.535202 GCTCCTCCTCGGGGATGAT 60.535 63.158 3.31 0.00 41.36 2.45
1435 3204 2.050168 CCAAAGCACGCACGCAAT 60.050 55.556 0.00 0.00 0.00 3.56
1448 3217 0.613260 AGGCAGTGAGATACGCCAAA 59.387 50.000 0.00 0.00 45.34 3.28
1470 3239 2.386661 TTGGACGAGAGATTTCAGCC 57.613 50.000 0.00 0.00 0.00 4.85
1550 3319 4.808558 CATTGTCAAAAACGTCCCATGAT 58.191 39.130 0.00 0.00 0.00 2.45
1557 3326 6.582295 AGATGTTATGCATTGTCAAAAACGTC 59.418 34.615 3.54 11.96 38.06 4.34
1728 3514 7.016563 AGACAAATATGCCTCAGGTGATACATA 59.983 37.037 0.00 0.00 0.00 2.29
1810 3601 6.531021 TGACGAAAAGAAGGGAGATAAAAGT 58.469 36.000 0.00 0.00 0.00 2.66
1938 4376 7.203218 TCTATCGTGAAGTAATTCATGGTCAG 58.797 38.462 21.40 15.94 38.24 3.51
2237 4745 4.970662 TGTTCATGAGCCAAGCTAAATC 57.029 40.909 7.13 0.00 39.88 2.17
2245 4753 5.769662 ACAAAAGAGTATGTTCATGAGCCAA 59.230 36.000 7.13 0.00 0.00 4.52
2410 4936 5.678583 CCAGCTCAGAAAGAAAGGATGATA 58.321 41.667 0.00 0.00 0.00 2.15
2425 4951 2.623889 ACTTATACTACCGCCAGCTCAG 59.376 50.000 0.00 0.00 0.00 3.35
2520 5050 1.872237 GCACCAGTGTTCGCTTGACTA 60.872 52.381 0.00 0.00 0.00 2.59
2568 5103 4.178956 ACCAACCAACAAGTAGGTGAAT 57.821 40.909 0.00 0.00 36.95 2.57
2666 5207 8.082852 TCTCTGTAGTAGTGAAACATCAGAAAC 58.917 37.037 0.00 0.00 41.43 2.78
2698 5239 7.394816 CATTTCTTTCCTAGAAGGACCTAACA 58.605 38.462 0.00 0.00 45.78 2.41
2766 5315 4.796606 AGGTATCAGCCAATGCAGTATTT 58.203 39.130 0.00 0.00 41.13 1.40
2785 5334 9.444600 ACATGTTTATCGTCTTATTACAAAGGT 57.555 29.630 0.00 0.00 0.00 3.50
3139 5696 3.788142 ACCTAGATGGAACCCAACATCAT 59.212 43.478 7.32 0.00 44.50 2.45
3152 5709 6.401047 TCGGTGTATTTTCTACCTAGATGG 57.599 41.667 0.00 0.00 42.93 3.51
3154 5711 6.518537 GCCATCGGTGTATTTTCTACCTAGAT 60.519 42.308 0.00 0.00 32.28 1.98
3163 5720 6.017109 ACTGATATTGCCATCGGTGTATTTTC 60.017 38.462 0.00 0.00 41.86 2.29
3203 5760 1.354368 TGCTACCCTTTTTCTCCCTGG 59.646 52.381 0.00 0.00 0.00 4.45
3223 5780 1.319541 GAGCATGCTGGCAAGATCAT 58.680 50.000 28.27 0.00 31.50 2.45
3281 5838 4.749245 AATAGAAAAACAGGACGTGCAG 57.251 40.909 10.52 3.29 0.00 4.41
3334 5891 5.330233 TCATGGTGTAGTGAACTCCTTAGA 58.670 41.667 0.00 0.00 41.50 2.10
3615 6174 7.048629 TCTGACAATCAAATTTTGGCTTACA 57.951 32.000 9.18 4.75 33.08 2.41
3789 6484 3.048600 CAGGAGGAATGGGATGGTTCTA 58.951 50.000 0.00 0.00 0.00 2.10
3919 7163 6.960468 AGCAGCAGTAAAAACTACTTCTTTC 58.040 36.000 0.00 0.00 0.00 2.62
4029 7280 8.836268 ATATTTGTCATCACTGTTGCAATTTT 57.164 26.923 0.59 0.00 0.00 1.82
4070 7321 7.619050 AGAGAGCTATCAAATTCAGTTTCTCA 58.381 34.615 11.60 0.00 0.00 3.27
4206 7457 8.211629 GGTGTTATTAGAATAGACTCACCCATT 58.788 37.037 0.00 0.00 37.44 3.16
4207 7458 7.736893 GGTGTTATTAGAATAGACTCACCCAT 58.263 38.462 0.00 0.00 37.44 4.00
4208 7459 7.120923 GGTGTTATTAGAATAGACTCACCCA 57.879 40.000 0.00 0.00 37.44 4.51
4210 7461 6.326843 AGGGGTGTTATTAGAATAGACTCACC 59.673 42.308 0.00 0.00 41.08 4.02
4211 7462 7.362802 AGGGGTGTTATTAGAATAGACTCAC 57.637 40.000 0.00 0.00 0.00 3.51
4212 7463 7.989947 AAGGGGTGTTATTAGAATAGACTCA 57.010 36.000 0.00 0.00 0.00 3.41
4213 7464 9.984190 CTTAAGGGGTGTTATTAGAATAGACTC 57.016 37.037 0.00 0.00 0.00 3.36
4214 7465 9.725206 TCTTAAGGGGTGTTATTAGAATAGACT 57.275 33.333 1.85 0.00 0.00 3.24
4215 7466 9.761504 GTCTTAAGGGGTGTTATTAGAATAGAC 57.238 37.037 1.85 0.00 0.00 2.59
4216 7467 8.931568 GGTCTTAAGGGGTGTTATTAGAATAGA 58.068 37.037 1.85 0.00 0.00 1.98
4217 7468 8.935741 AGGTCTTAAGGGGTGTTATTAGAATAG 58.064 37.037 1.85 0.00 0.00 1.73
4218 7469 8.865244 AGGTCTTAAGGGGTGTTATTAGAATA 57.135 34.615 1.85 0.00 0.00 1.75
4219 7470 7.766736 AGGTCTTAAGGGGTGTTATTAGAAT 57.233 36.000 1.85 0.00 0.00 2.40
4220 7471 7.578458 AAGGTCTTAAGGGGTGTTATTAGAA 57.422 36.000 1.85 0.00 0.00 2.10
4221 7472 8.865244 ATAAGGTCTTAAGGGGTGTTATTAGA 57.135 34.615 1.85 0.00 0.00 2.10
4222 7473 9.557061 GAATAAGGTCTTAAGGGGTGTTATTAG 57.443 37.037 1.85 0.00 0.00 1.73
4223 7474 9.287818 AGAATAAGGTCTTAAGGGGTGTTATTA 57.712 33.333 1.85 0.00 0.00 0.98
4224 7475 8.053355 CAGAATAAGGTCTTAAGGGGTGTTATT 58.947 37.037 1.85 5.95 0.00 1.40
4225 7476 7.574607 CAGAATAAGGTCTTAAGGGGTGTTAT 58.425 38.462 1.85 0.00 0.00 1.89
4226 7477 6.577638 GCAGAATAAGGTCTTAAGGGGTGTTA 60.578 42.308 1.85 0.00 0.00 2.41
4227 7478 5.806734 GCAGAATAAGGTCTTAAGGGGTGTT 60.807 44.000 1.85 0.00 0.00 3.32
4228 7479 4.324331 GCAGAATAAGGTCTTAAGGGGTGT 60.324 45.833 1.85 0.00 0.00 4.16
4229 7480 4.200092 GCAGAATAAGGTCTTAAGGGGTG 58.800 47.826 1.85 0.00 0.00 4.61
4230 7481 3.850173 TGCAGAATAAGGTCTTAAGGGGT 59.150 43.478 1.85 0.00 0.00 4.95
4231 7482 4.200092 GTGCAGAATAAGGTCTTAAGGGG 58.800 47.826 1.85 0.00 0.00 4.79
4232 7483 4.636206 GTGTGCAGAATAAGGTCTTAAGGG 59.364 45.833 1.85 0.00 0.00 3.95
4233 7484 4.636206 GGTGTGCAGAATAAGGTCTTAAGG 59.364 45.833 1.85 0.00 0.00 2.69
4234 7485 4.330074 CGGTGTGCAGAATAAGGTCTTAAG 59.670 45.833 0.00 0.00 0.00 1.85
4235 7486 4.020928 TCGGTGTGCAGAATAAGGTCTTAA 60.021 41.667 0.00 0.00 0.00 1.85
4236 7487 3.512329 TCGGTGTGCAGAATAAGGTCTTA 59.488 43.478 0.00 0.00 0.00 2.10
4237 7488 2.301870 TCGGTGTGCAGAATAAGGTCTT 59.698 45.455 0.00 0.00 0.00 3.01
4238 7489 1.899814 TCGGTGTGCAGAATAAGGTCT 59.100 47.619 0.00 0.00 0.00 3.85
4239 7490 2.380084 TCGGTGTGCAGAATAAGGTC 57.620 50.000 0.00 0.00 0.00 3.85
4240 7491 2.812011 GTTTCGGTGTGCAGAATAAGGT 59.188 45.455 0.00 0.00 0.00 3.50
4241 7492 2.159707 CGTTTCGGTGTGCAGAATAAGG 60.160 50.000 0.00 0.00 0.00 2.69
4242 7493 2.478894 ACGTTTCGGTGTGCAGAATAAG 59.521 45.455 0.00 0.00 0.00 1.73
4243 7494 2.477375 GACGTTTCGGTGTGCAGAATAA 59.523 45.455 0.00 0.00 0.00 1.40
4244 7495 2.063266 GACGTTTCGGTGTGCAGAATA 58.937 47.619 0.00 0.00 0.00 1.75
4245 7496 0.865769 GACGTTTCGGTGTGCAGAAT 59.134 50.000 0.00 0.00 0.00 2.40
4246 7497 0.179094 AGACGTTTCGGTGTGCAGAA 60.179 50.000 0.00 0.00 0.00 3.02
4247 7498 0.179094 AAGACGTTTCGGTGTGCAGA 60.179 50.000 0.00 0.00 0.00 4.26
4248 7499 1.493772 TAAGACGTTTCGGTGTGCAG 58.506 50.000 0.00 0.00 0.00 4.41
4249 7500 2.157834 ATAAGACGTTTCGGTGTGCA 57.842 45.000 0.00 0.00 0.00 4.57
4250 7501 2.735134 AGAATAAGACGTTTCGGTGTGC 59.265 45.455 0.00 0.00 0.00 4.57
4251 7502 3.423123 GCAGAATAAGACGTTTCGGTGTG 60.423 47.826 0.00 0.00 0.00 3.82
4252 7503 2.735134 GCAGAATAAGACGTTTCGGTGT 59.265 45.455 0.00 0.00 0.00 4.16
4253 7504 2.993899 AGCAGAATAAGACGTTTCGGTG 59.006 45.455 0.00 0.00 0.00 4.94
4254 7505 3.314541 AGCAGAATAAGACGTTTCGGT 57.685 42.857 0.00 0.00 0.00 4.69
4255 7506 4.624024 TGTTAGCAGAATAAGACGTTTCGG 59.376 41.667 0.00 0.00 0.00 4.30
4256 7507 5.118050 TGTGTTAGCAGAATAAGACGTTTCG 59.882 40.000 0.00 0.00 32.95 3.46
4257 7508 6.462073 TGTGTTAGCAGAATAAGACGTTTC 57.538 37.500 0.00 0.00 32.95 2.78
4258 7509 6.854496 TTGTGTTAGCAGAATAAGACGTTT 57.146 33.333 0.00 0.00 32.95 3.60
4259 7510 6.854496 TTTGTGTTAGCAGAATAAGACGTT 57.146 33.333 0.00 0.00 32.95 3.99
4260 7511 6.259167 TGTTTTGTGTTAGCAGAATAAGACGT 59.741 34.615 0.00 0.00 32.95 4.34
4261 7512 6.655062 TGTTTTGTGTTAGCAGAATAAGACG 58.345 36.000 0.00 0.00 32.95 4.18
4262 7513 7.378728 GGTTGTTTTGTGTTAGCAGAATAAGAC 59.621 37.037 0.00 0.00 31.40 3.01
4263 7514 7.422399 GGTTGTTTTGTGTTAGCAGAATAAGA 58.578 34.615 0.00 0.00 0.00 2.10
4264 7515 6.359617 CGGTTGTTTTGTGTTAGCAGAATAAG 59.640 38.462 0.00 0.00 0.00 1.73
4265 7516 6.202937 CGGTTGTTTTGTGTTAGCAGAATAA 58.797 36.000 0.00 0.00 0.00 1.40
4266 7517 5.753744 CGGTTGTTTTGTGTTAGCAGAATA 58.246 37.500 0.00 0.00 0.00 1.75
4267 7518 4.606961 CGGTTGTTTTGTGTTAGCAGAAT 58.393 39.130 0.00 0.00 0.00 2.40
4268 7519 3.732471 GCGGTTGTTTTGTGTTAGCAGAA 60.732 43.478 0.00 0.00 0.00 3.02
4269 7520 2.223386 GCGGTTGTTTTGTGTTAGCAGA 60.223 45.455 0.00 0.00 0.00 4.26
4270 7521 2.116366 GCGGTTGTTTTGTGTTAGCAG 58.884 47.619 0.00 0.00 0.00 4.24
4271 7522 1.472878 TGCGGTTGTTTTGTGTTAGCA 59.527 42.857 0.00 0.00 0.00 3.49
4272 7523 2.116366 CTGCGGTTGTTTTGTGTTAGC 58.884 47.619 0.00 0.00 0.00 3.09
4273 7524 2.116366 GCTGCGGTTGTTTTGTGTTAG 58.884 47.619 0.00 0.00 0.00 2.34
4274 7525 1.472878 TGCTGCGGTTGTTTTGTGTTA 59.527 42.857 0.00 0.00 0.00 2.41
4275 7526 0.244994 TGCTGCGGTTGTTTTGTGTT 59.755 45.000 0.00 0.00 0.00 3.32
4276 7527 0.244994 TTGCTGCGGTTGTTTTGTGT 59.755 45.000 0.00 0.00 0.00 3.72
4277 7528 1.354040 TTTGCTGCGGTTGTTTTGTG 58.646 45.000 0.00 0.00 0.00 3.33
4278 7529 2.086054 TTTTGCTGCGGTTGTTTTGT 57.914 40.000 0.00 0.00 0.00 2.83
4279 7530 2.475353 GGTTTTTGCTGCGGTTGTTTTG 60.475 45.455 0.00 0.00 0.00 2.44
4280 7531 1.735018 GGTTTTTGCTGCGGTTGTTTT 59.265 42.857 0.00 0.00 0.00 2.43
4281 7532 1.364721 GGTTTTTGCTGCGGTTGTTT 58.635 45.000 0.00 0.00 0.00 2.83
4282 7533 0.461163 GGGTTTTTGCTGCGGTTGTT 60.461 50.000 0.00 0.00 0.00 2.83
4283 7534 1.142965 GGGTTTTTGCTGCGGTTGT 59.857 52.632 0.00 0.00 0.00 3.32
4284 7535 1.142748 TGGGTTTTTGCTGCGGTTG 59.857 52.632 0.00 0.00 0.00 3.77
4285 7536 1.142965 GTGGGTTTTTGCTGCGGTT 59.857 52.632 0.00 0.00 0.00 4.44
4286 7537 2.791868 GGTGGGTTTTTGCTGCGGT 61.792 57.895 0.00 0.00 0.00 5.68
4287 7538 2.028925 GGTGGGTTTTTGCTGCGG 59.971 61.111 0.00 0.00 0.00 5.69
4288 7539 2.028925 GGGTGGGTTTTTGCTGCG 59.971 61.111 0.00 0.00 0.00 5.18
4289 7540 2.022240 TTCGGGTGGGTTTTTGCTGC 62.022 55.000 0.00 0.00 0.00 5.25
4290 7541 0.249280 GTTCGGGTGGGTTTTTGCTG 60.249 55.000 0.00 0.00 0.00 4.41
4291 7542 1.396607 GGTTCGGGTGGGTTTTTGCT 61.397 55.000 0.00 0.00 0.00 3.91
4292 7543 1.068417 GGTTCGGGTGGGTTTTTGC 59.932 57.895 0.00 0.00 0.00 3.68
4293 7544 0.103390 GTGGTTCGGGTGGGTTTTTG 59.897 55.000 0.00 0.00 0.00 2.44
4294 7545 0.324460 TGTGGTTCGGGTGGGTTTTT 60.324 50.000 0.00 0.00 0.00 1.94
4295 7546 0.105913 ATGTGGTTCGGGTGGGTTTT 60.106 50.000 0.00 0.00 0.00 2.43
4296 7547 0.825840 CATGTGGTTCGGGTGGGTTT 60.826 55.000 0.00 0.00 0.00 3.27
4297 7548 1.228429 CATGTGGTTCGGGTGGGTT 60.228 57.895 0.00 0.00 0.00 4.11
4298 7549 2.434331 CATGTGGTTCGGGTGGGT 59.566 61.111 0.00 0.00 0.00 4.51
4299 7550 3.061848 GCATGTGGTTCGGGTGGG 61.062 66.667 0.00 0.00 0.00 4.61
4300 7551 2.282110 TGCATGTGGTTCGGGTGG 60.282 61.111 0.00 0.00 0.00 4.61
4301 7552 1.896183 TGTGCATGTGGTTCGGGTG 60.896 57.895 0.00 0.00 0.00 4.61
4302 7553 1.896660 GTGTGCATGTGGTTCGGGT 60.897 57.895 0.00 0.00 0.00 5.28
4303 7554 1.896183 TGTGTGCATGTGGTTCGGG 60.896 57.895 0.00 0.00 0.00 5.14
4304 7555 1.282570 GTGTGTGCATGTGGTTCGG 59.717 57.895 0.00 0.00 0.00 4.30
4305 7556 0.316937 GTGTGTGTGCATGTGGTTCG 60.317 55.000 0.00 0.00 0.00 3.95
4306 7557 0.316937 CGTGTGTGTGCATGTGGTTC 60.317 55.000 0.00 0.00 0.00 3.62
4307 7558 1.726865 CGTGTGTGTGCATGTGGTT 59.273 52.632 0.00 0.00 0.00 3.67
4308 7559 2.833533 GCGTGTGTGTGCATGTGGT 61.834 57.895 0.00 0.00 0.00 4.16
4309 7560 2.051076 GCGTGTGTGTGCATGTGG 60.051 61.111 0.00 0.00 0.00 4.17
4310 7561 1.369568 CTGCGTGTGTGTGCATGTG 60.370 57.895 0.00 0.00 40.89 3.21
4311 7562 3.024784 CTGCGTGTGTGTGCATGT 58.975 55.556 0.00 0.00 40.89 3.21
4312 7563 2.427905 GCTGCGTGTGTGTGCATG 60.428 61.111 0.00 0.00 40.89 4.06
4313 7564 3.663176 GGCTGCGTGTGTGTGCAT 61.663 61.111 0.00 0.00 40.89 3.96
4316 7567 3.952675 GTGGGCTGCGTGTGTGTG 61.953 66.667 0.00 0.00 0.00 3.82
4318 7569 4.935495 AGGTGGGCTGCGTGTGTG 62.935 66.667 0.00 0.00 0.00 3.82
4319 7570 2.124507 ATAAGGTGGGCTGCGTGTGT 62.125 55.000 0.00 0.00 0.00 3.72
4320 7571 0.960364 AATAAGGTGGGCTGCGTGTG 60.960 55.000 0.00 0.00 0.00 3.82
4321 7572 0.676782 GAATAAGGTGGGCTGCGTGT 60.677 55.000 0.00 0.00 0.00 4.49
4322 7573 0.392998 AGAATAAGGTGGGCTGCGTG 60.393 55.000 0.00 0.00 0.00 5.34
4323 7574 0.328258 AAGAATAAGGTGGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
4324 7575 1.401905 GAAAGAATAAGGTGGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
4325 7576 2.446435 TGAAAGAATAAGGTGGGCTGC 58.554 47.619 0.00 0.00 0.00 5.25
4326 7577 4.272489 TGATGAAAGAATAAGGTGGGCTG 58.728 43.478 0.00 0.00 0.00 4.85
4327 7578 4.228210 TCTGATGAAAGAATAAGGTGGGCT 59.772 41.667 0.00 0.00 0.00 5.19
4328 7579 4.526970 TCTGATGAAAGAATAAGGTGGGC 58.473 43.478 0.00 0.00 0.00 5.36
4329 7580 6.359804 TGATCTGATGAAAGAATAAGGTGGG 58.640 40.000 0.00 0.00 0.00 4.61
4330 7581 7.337689 TGTTGATCTGATGAAAGAATAAGGTGG 59.662 37.037 0.00 0.00 0.00 4.61
4331 7582 8.180267 GTGTTGATCTGATGAAAGAATAAGGTG 58.820 37.037 0.00 0.00 0.00 4.00
4332 7583 8.273780 GTGTTGATCTGATGAAAGAATAAGGT 57.726 34.615 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.