Multiple sequence alignment - TraesCS7B01G177900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G177900 chr7B 100.000 3117 0 0 1 3117 255253534 255250418 0.000000e+00 5757
1 TraesCS7B01G177900 chr7B 93.376 785 44 6 1 780 6803344 6804125 0.000000e+00 1155
2 TraesCS7B01G177900 chr7B 92.653 490 32 2 1098 1586 255251946 255251460 0.000000e+00 702
3 TraesCS7B01G177900 chr7B 84.629 553 20 10 772 1323 228819100 228818612 1.000000e-134 490
4 TraesCS7B01G177900 chr4B 96.036 1236 47 2 1589 2822 592155155 592153920 0.000000e+00 2010
5 TraesCS7B01G177900 chr4B 96.013 1204 46 2 1621 2822 592031412 592030209 0.000000e+00 1956
6 TraesCS7B01G177900 chr4B 94.010 818 40 7 771 1586 592155478 592154668 0.000000e+00 1230
7 TraesCS7B01G177900 chr4B 98.765 324 4 0 2794 3117 592030271 592029948 7.500000e-161 577
8 TraesCS7B01G177900 chr4B 98.765 324 4 0 2794 3117 592153982 592153659 7.500000e-161 577
9 TraesCS7B01G177900 chr4B 95.000 360 15 3 771 1129 592032075 592031718 2.100000e-156 562
10 TraesCS7B01G177900 chr3D 95.769 1229 47 4 1599 2822 134599284 134598056 0.000000e+00 1977
11 TraesCS7B01G177900 chr3D 95.592 1225 50 3 1602 2822 593933859 593935083 0.000000e+00 1960
12 TraesCS7B01G177900 chr3D 95.362 1229 52 4 1599 2822 365841993 365840765 0.000000e+00 1949
13 TraesCS7B01G177900 chr3D 95.285 1230 51 6 1599 2822 535654971 535656199 0.000000e+00 1943
14 TraesCS7B01G177900 chr3D 93.582 779 39 8 1 774 140969608 140970380 0.000000e+00 1151
15 TraesCS7B01G177900 chr3D 91.839 821 33 8 772 1586 134599598 134598806 0.000000e+00 1114
16 TraesCS7B01G177900 chr3D 91.495 823 41 10 771 1586 593933533 593934333 0.000000e+00 1105
17 TraesCS7B01G177900 chr3D 91.230 821 38 10 772 1586 365842307 365841515 0.000000e+00 1086
18 TraesCS7B01G177900 chr3D 92.644 571 27 4 1018 1586 535654891 535655448 0.000000e+00 808
19 TraesCS7B01G177900 chr3D 97.840 324 7 0 2794 3117 134598118 134597795 7.550000e-156 560
20 TraesCS7B01G177900 chr3D 97.538 325 7 1 2794 3117 535656137 535656461 3.510000e-154 555
21 TraesCS7B01G177900 chr3D 97.523 323 8 0 2795 3117 365840826 365840504 1.260000e-153 553
22 TraesCS7B01G177900 chr6D 95.443 1229 51 4 1599 2822 466182413 466183641 0.000000e+00 1954
23 TraesCS7B01G177900 chr6D 92.509 534 26 3 1055 1586 466182370 466182891 0.000000e+00 752
24 TraesCS7B01G177900 chr6D 98.457 324 5 0 2794 3117 47794213 47794536 3.490000e-159 571
25 TraesCS7B01G177900 chr6D 98.148 324 6 0 2794 3117 466183579 466183902 1.620000e-157 566
26 TraesCS7B01G177900 chr6D 93.061 245 14 1 882 1123 47792740 47792984 3.820000e-94 355
27 TraesCS7B01G177900 chr5D 95.717 1214 49 3 1612 2822 100988722 100989935 0.000000e+00 1951
28 TraesCS7B01G177900 chr5D 88.780 820 39 17 772 1586 498267538 498268309 0.000000e+00 955
29 TraesCS7B01G177900 chr5D 94.612 464 23 2 1125 1586 100988723 100989186 0.000000e+00 717
30 TraesCS7B01G177900 chr5D 97.840 324 7 0 2794 3117 100989873 100990196 7.550000e-156 560
31 TraesCS7B01G177900 chr2D 95.041 1230 55 5 1599 2822 472192357 472191128 0.000000e+00 1929
32 TraesCS7B01G177900 chr2D 95.355 775 31 3 4 773 463116759 463115985 0.000000e+00 1227
33 TraesCS7B01G177900 chr2D 94.911 786 33 5 1 780 39368600 39369384 0.000000e+00 1223
34 TraesCS7B01G177900 chr2D 94.248 765 38 4 15 773 552932111 552932875 0.000000e+00 1164
35 TraesCS7B01G177900 chr2D 91.443 818 42 13 772 1586 472192671 472191879 0.000000e+00 1098
36 TraesCS7B01G177900 chr5B 95.887 778 27 3 1 773 227821946 227822723 0.000000e+00 1254
37 TraesCS7B01G177900 chr2B 95.159 785 31 5 1 780 166989479 166990261 0.000000e+00 1232
38 TraesCS7B01G177900 chr2B 95.232 776 31 4 4 773 117546076 117545301 0.000000e+00 1223
39 TraesCS7B01G177900 chr2B 94.216 778 39 4 1 773 222368938 222369714 0.000000e+00 1182
40 TraesCS7B01G177900 chr2B 94.216 778 39 4 1 773 275443689 275444465 0.000000e+00 1182
41 TraesCS7B01G177900 chr6B 95.244 778 27 6 4 773 519196119 519195344 0.000000e+00 1223
42 TraesCS7B01G177900 chr2A 93.862 782 42 4 4 780 727607526 727606746 0.000000e+00 1173
43 TraesCS7B01G177900 chr2A 89.183 416 25 8 854 1268 659088659 659088263 4.640000e-138 501
44 TraesCS7B01G177900 chr3B 93.478 782 46 3 4 780 715717156 715717937 0.000000e+00 1157
45 TraesCS7B01G177900 chr3B 98.765 324 4 0 2794 3117 13053945 13054268 7.500000e-161 577
46 TraesCS7B01G177900 chr3B 93.634 377 19 3 771 1147 13052270 13052641 2.720000e-155 558
47 TraesCS7B01G177900 chr3B 98.052 154 2 1 772 925 104276003 104276155 1.840000e-67 267
48 TraesCS7B01G177900 chr1D 93.073 794 46 7 4 792 293535653 293534864 0.000000e+00 1153
49 TraesCS7B01G177900 chr1D 93.359 783 45 5 4 780 345531448 345530667 0.000000e+00 1151
50 TraesCS7B01G177900 chr7A 90.465 818 50 13 771 1586 597554153 597553362 0.000000e+00 1053
51 TraesCS7B01G177900 chr5A 93.711 159 8 2 772 929 606328799 606328956 1.440000e-58 237


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G177900 chr7B 255250418 255253534 3116 True 3229.500000 5757 96.326500 1 3117 2 chr7B.!!$R2 3116
1 TraesCS7B01G177900 chr7B 6803344 6804125 781 False 1155.000000 1155 93.376000 1 780 1 chr7B.!!$F1 779
2 TraesCS7B01G177900 chr4B 592153659 592155478 1819 True 1272.333333 2010 96.270333 771 3117 3 chr4B.!!$R2 2346
3 TraesCS7B01G177900 chr4B 592029948 592032075 2127 True 1031.666667 1956 96.592667 771 3117 3 chr4B.!!$R1 2346
4 TraesCS7B01G177900 chr3D 593933533 593935083 1550 False 1532.500000 1960 93.543500 771 2822 2 chr3D.!!$F3 2051
5 TraesCS7B01G177900 chr3D 134597795 134599598 1803 True 1217.000000 1977 95.149333 772 3117 3 chr3D.!!$R1 2345
6 TraesCS7B01G177900 chr3D 365840504 365842307 1803 True 1196.000000 1949 94.705000 772 3117 3 chr3D.!!$R2 2345
7 TraesCS7B01G177900 chr3D 140969608 140970380 772 False 1151.000000 1151 93.582000 1 774 1 chr3D.!!$F1 773
8 TraesCS7B01G177900 chr3D 535654891 535656461 1570 False 1102.000000 1943 95.155667 1018 3117 3 chr3D.!!$F2 2099
9 TraesCS7B01G177900 chr6D 466182370 466183902 1532 False 1090.666667 1954 95.366667 1055 3117 3 chr6D.!!$F2 2062
10 TraesCS7B01G177900 chr6D 47792740 47794536 1796 False 463.000000 571 95.759000 882 3117 2 chr6D.!!$F1 2235
11 TraesCS7B01G177900 chr5D 100988722 100990196 1474 False 1076.000000 1951 96.056333 1125 3117 3 chr5D.!!$F2 1992
12 TraesCS7B01G177900 chr5D 498267538 498268309 771 False 955.000000 955 88.780000 772 1586 1 chr5D.!!$F1 814
13 TraesCS7B01G177900 chr2D 472191128 472192671 1543 True 1513.500000 1929 93.242000 772 2822 2 chr2D.!!$R2 2050
14 TraesCS7B01G177900 chr2D 463115985 463116759 774 True 1227.000000 1227 95.355000 4 773 1 chr2D.!!$R1 769
15 TraesCS7B01G177900 chr2D 39368600 39369384 784 False 1223.000000 1223 94.911000 1 780 1 chr2D.!!$F1 779
16 TraesCS7B01G177900 chr2D 552932111 552932875 764 False 1164.000000 1164 94.248000 15 773 1 chr2D.!!$F2 758
17 TraesCS7B01G177900 chr5B 227821946 227822723 777 False 1254.000000 1254 95.887000 1 773 1 chr5B.!!$F1 772
18 TraesCS7B01G177900 chr2B 166989479 166990261 782 False 1232.000000 1232 95.159000 1 780 1 chr2B.!!$F1 779
19 TraesCS7B01G177900 chr2B 117545301 117546076 775 True 1223.000000 1223 95.232000 4 773 1 chr2B.!!$R1 769
20 TraesCS7B01G177900 chr2B 222368938 222369714 776 False 1182.000000 1182 94.216000 1 773 1 chr2B.!!$F2 772
21 TraesCS7B01G177900 chr2B 275443689 275444465 776 False 1182.000000 1182 94.216000 1 773 1 chr2B.!!$F3 772
22 TraesCS7B01G177900 chr6B 519195344 519196119 775 True 1223.000000 1223 95.244000 4 773 1 chr6B.!!$R1 769
23 TraesCS7B01G177900 chr2A 727606746 727607526 780 True 1173.000000 1173 93.862000 4 780 1 chr2A.!!$R2 776
24 TraesCS7B01G177900 chr3B 715717156 715717937 781 False 1157.000000 1157 93.478000 4 780 1 chr3B.!!$F2 776
25 TraesCS7B01G177900 chr3B 13052270 13054268 1998 False 567.500000 577 96.199500 771 3117 2 chr3B.!!$F3 2346
26 TraesCS7B01G177900 chr1D 293534864 293535653 789 True 1153.000000 1153 93.073000 4 792 1 chr1D.!!$R1 788
27 TraesCS7B01G177900 chr1D 345530667 345531448 781 True 1151.000000 1151 93.359000 4 780 1 chr1D.!!$R2 776
28 TraesCS7B01G177900 chr7A 597553362 597554153 791 True 1053.000000 1053 90.465000 771 1586 1 chr7A.!!$R1 815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 862 1.000717 ACCATTTTCGTCCGGCTTTTG 60.001 47.619 0.00 0.00 0.00 2.44 F
1464 1978 0.027063 GTGCTAGAGCTCGACGAGAC 59.973 60.000 28.43 19.33 42.66 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1808 2322 0.036577 GAGATGAGCCGGATGATGGG 60.037 60.0 5.05 0.0 0.00 4.0 R
2829 3346 0.179051 GAAGCAGCTCATCAGGGAGG 60.179 60.0 0.00 0.0 35.41 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 147 8.891671 TTGTTCTAGGTAAAGTGAACGTTAAT 57.108 30.769 0.00 0.00 40.93 1.40
147 148 8.891671 TGTTCTAGGTAAAGTGAACGTTAATT 57.108 30.769 0.00 0.00 40.93 1.40
211 212 7.228906 GGAATATTTGTTCTACCTTTAGCTCCC 59.771 40.741 0.00 0.00 0.00 4.30
294 299 5.535030 GGTTATCAAGACCTTTTTCTGGTGT 59.465 40.000 0.00 0.00 38.03 4.16
487 494 6.365970 ACCACTCAAAATCTATCACACTCT 57.634 37.500 0.00 0.00 0.00 3.24
561 570 2.168728 CCCACTAGCTTAGTTGAGGGAC 59.831 54.545 0.00 0.00 40.31 4.46
637 648 8.147704 GGGAAACTTTTACTGGATCAAATTCAA 58.852 33.333 0.00 0.00 0.00 2.69
703 717 9.459640 GATTTTACTTGTTCTGAAAACCCTAAC 57.540 33.333 0.00 0.00 0.00 2.34
848 862 1.000717 ACCATTTTCGTCCGGCTTTTG 60.001 47.619 0.00 0.00 0.00 2.44
941 967 4.055820 TCCCTAGAACTCCCAGAGTAGAT 58.944 47.826 0.00 0.00 42.59 1.98
1009 1039 1.288508 CCCCAACCCCATGGAGATCA 61.289 60.000 15.22 0.00 43.54 2.92
1024 1054 3.319405 GGAGATCAAGATCAAGCTCCGTA 59.681 47.826 12.21 0.00 40.22 4.02
1032 1062 0.469331 TCAAGCTCCGTATCCCCGAT 60.469 55.000 0.00 0.00 0.00 4.18
1067 1097 1.380650 GCCTCTCCTCCTTCCTCGT 60.381 63.158 0.00 0.00 0.00 4.18
1171 1506 2.359107 TCTACGGCACCGACGACT 60.359 61.111 17.40 0.00 42.83 4.18
1294 1808 2.279851 CACCTGCGTCGACAACCA 60.280 61.111 17.16 8.27 0.00 3.67
1384 1898 2.660258 AAAGCACCGTTCGTCTGCCT 62.660 55.000 7.98 0.00 0.00 4.75
1385 1899 3.112709 GCACCGTTCGTCTGCCTC 61.113 66.667 2.14 0.00 0.00 4.70
1386 1900 2.805353 CACCGTTCGTCTGCCTCG 60.805 66.667 0.00 0.00 0.00 4.63
1387 1901 4.719369 ACCGTTCGTCTGCCTCGC 62.719 66.667 0.00 0.00 0.00 5.03
1417 1931 3.305314 ACCCGCGGTGTGTATGAT 58.695 55.556 26.12 0.00 32.98 2.45
1418 1932 1.143183 ACCCGCGGTGTGTATGATC 59.857 57.895 26.12 0.00 32.98 2.92
1419 1933 1.327690 ACCCGCGGTGTGTATGATCT 61.328 55.000 26.12 0.00 32.98 2.75
1420 1934 0.597637 CCCGCGGTGTGTATGATCTC 60.598 60.000 26.12 0.00 0.00 2.75
1421 1935 0.102300 CCGCGGTGTGTATGATCTCA 59.898 55.000 19.50 0.00 0.00 3.27
1422 1936 1.470805 CCGCGGTGTGTATGATCTCAA 60.471 52.381 19.50 0.00 0.00 3.02
1423 1937 1.854743 CGCGGTGTGTATGATCTCAAG 59.145 52.381 0.00 0.00 0.00 3.02
1424 1938 2.205074 GCGGTGTGTATGATCTCAAGG 58.795 52.381 0.00 0.00 0.00 3.61
1425 1939 2.159099 GCGGTGTGTATGATCTCAAGGA 60.159 50.000 0.00 0.00 0.00 3.36
1426 1940 3.711086 CGGTGTGTATGATCTCAAGGAG 58.289 50.000 0.00 0.00 0.00 3.69
1427 1941 3.491619 CGGTGTGTATGATCTCAAGGAGG 60.492 52.174 0.00 0.00 0.00 4.30
1428 1942 3.181461 GGTGTGTATGATCTCAAGGAGGG 60.181 52.174 0.00 0.00 0.00 4.30
1429 1943 2.435805 TGTGTATGATCTCAAGGAGGGC 59.564 50.000 0.00 0.00 0.00 5.19
1430 1944 1.688735 TGTATGATCTCAAGGAGGGCG 59.311 52.381 0.00 0.00 0.00 6.13
1431 1945 1.964223 GTATGATCTCAAGGAGGGCGA 59.036 52.381 0.00 0.00 0.00 5.54
1432 1946 1.047002 ATGATCTCAAGGAGGGCGAG 58.953 55.000 0.00 0.00 0.00 5.03
1433 1947 1.045350 TGATCTCAAGGAGGGCGAGG 61.045 60.000 0.00 0.00 0.00 4.63
1434 1948 1.753368 GATCTCAAGGAGGGCGAGGG 61.753 65.000 0.00 0.00 0.00 4.30
1435 1949 2.243774 ATCTCAAGGAGGGCGAGGGA 62.244 60.000 0.00 0.00 0.00 4.20
1436 1950 2.683933 TCAAGGAGGGCGAGGGAC 60.684 66.667 0.00 0.00 0.00 4.46
1437 1951 3.003173 CAAGGAGGGCGAGGGACA 61.003 66.667 0.00 0.00 0.00 4.02
1438 1952 2.685380 AAGGAGGGCGAGGGACAG 60.685 66.667 0.00 0.00 0.00 3.51
1439 1953 4.787280 AGGAGGGCGAGGGACAGG 62.787 72.222 0.00 0.00 0.00 4.00
1447 1961 3.775654 GAGGGACAGGGGCTCGTG 61.776 72.222 4.34 4.34 35.14 4.35
1450 1964 3.075005 GGACAGGGGCTCGTGCTA 61.075 66.667 6.10 0.00 39.59 3.49
1451 1965 2.496817 GACAGGGGCTCGTGCTAG 59.503 66.667 6.10 0.06 39.59 3.42
1452 1966 2.037367 ACAGGGGCTCGTGCTAGA 59.963 61.111 6.10 0.00 39.59 2.43
1453 1967 2.010582 GACAGGGGCTCGTGCTAGAG 62.011 65.000 6.10 4.91 41.03 2.43
1462 1976 4.987419 GTGCTAGAGCTCGACGAG 57.013 61.111 20.56 20.56 42.66 4.18
1463 1977 2.385237 GTGCTAGAGCTCGACGAGA 58.615 57.895 28.43 6.43 42.66 4.04
1464 1978 0.027063 GTGCTAGAGCTCGACGAGAC 59.973 60.000 28.43 19.33 42.66 3.36
1465 1979 0.391263 TGCTAGAGCTCGACGAGACA 60.391 55.000 28.43 12.03 42.66 3.41
1466 1980 0.027063 GCTAGAGCTCGACGAGACAC 59.973 60.000 28.43 16.65 38.21 3.67
1467 1981 1.360820 CTAGAGCTCGACGAGACACA 58.639 55.000 28.43 8.99 0.00 3.72
1468 1982 1.061421 CTAGAGCTCGACGAGACACAC 59.939 57.143 28.43 10.04 0.00 3.82
1469 1983 0.604243 AGAGCTCGACGAGACACACT 60.604 55.000 28.43 14.78 0.00 3.55
1470 1984 0.238817 GAGCTCGACGAGACACACTT 59.761 55.000 28.43 3.69 0.00 3.16
1471 1985 0.238817 AGCTCGACGAGACACACTTC 59.761 55.000 28.43 7.83 0.00 3.01
1472 1986 1.060726 GCTCGACGAGACACACTTCG 61.061 60.000 28.43 0.00 32.24 3.79
1473 1987 0.511653 CTCGACGAGACACACTTCGA 59.488 55.000 20.25 0.00 36.11 3.71
1474 1988 1.128878 CTCGACGAGACACACTTCGAT 59.871 52.381 20.25 0.00 37.29 3.59
1475 1989 1.534163 TCGACGAGACACACTTCGATT 59.466 47.619 0.00 0.00 34.36 3.34
1476 1990 2.031420 TCGACGAGACACACTTCGATTT 60.031 45.455 0.00 0.00 34.36 2.17
1477 1991 2.338813 CGACGAGACACACTTCGATTTC 59.661 50.000 0.51 0.00 32.57 2.17
1478 1992 2.316792 ACGAGACACACTTCGATTTCG 58.683 47.619 0.51 0.00 41.45 3.46
1493 2007 4.326278 TCGATTTCGACACAAACTATGAGC 59.674 41.667 0.00 0.00 44.22 4.26
1494 2008 4.327357 CGATTTCGACACAAACTATGAGCT 59.673 41.667 0.00 0.00 43.02 4.09
1495 2009 4.990543 TTTCGACACAAACTATGAGCTG 57.009 40.909 0.00 0.00 0.00 4.24
1496 2010 2.959516 TCGACACAAACTATGAGCTGG 58.040 47.619 0.00 0.00 0.00 4.85
1497 2011 2.560981 TCGACACAAACTATGAGCTGGA 59.439 45.455 0.00 0.00 0.00 3.86
1498 2012 2.926200 CGACACAAACTATGAGCTGGAG 59.074 50.000 0.00 0.00 0.00 3.86
1499 2013 3.615110 CGACACAAACTATGAGCTGGAGT 60.615 47.826 0.00 0.00 0.00 3.85
1500 2014 3.668447 ACACAAACTATGAGCTGGAGTG 58.332 45.455 0.00 0.00 0.00 3.51
1501 2015 2.417933 CACAAACTATGAGCTGGAGTGC 59.582 50.000 0.00 0.00 0.00 4.40
1503 2017 3.515502 ACAAACTATGAGCTGGAGTGCTA 59.484 43.478 0.00 0.00 44.17 3.49
1504 2018 4.118410 CAAACTATGAGCTGGAGTGCTAG 58.882 47.826 0.00 0.00 44.17 3.42
1505 2019 3.304911 ACTATGAGCTGGAGTGCTAGA 57.695 47.619 0.00 0.00 44.17 2.43
1506 2020 2.955660 ACTATGAGCTGGAGTGCTAGAC 59.044 50.000 0.00 0.00 44.17 2.59
1507 2021 1.118838 ATGAGCTGGAGTGCTAGACC 58.881 55.000 0.00 0.00 44.17 3.85
1508 2022 1.315981 TGAGCTGGAGTGCTAGACCG 61.316 60.000 0.00 0.00 44.17 4.79
1509 2023 2.202810 GCTGGAGTGCTAGACCGC 60.203 66.667 0.00 0.00 0.00 5.68
1510 2024 2.103143 CTGGAGTGCTAGACCGCG 59.897 66.667 0.00 0.00 0.00 6.46
1511 2025 3.417275 CTGGAGTGCTAGACCGCGG 62.417 68.421 26.86 26.86 0.00 6.46
1512 2026 3.138798 GGAGTGCTAGACCGCGGA 61.139 66.667 35.90 8.90 0.00 5.54
1513 2027 2.409651 GAGTGCTAGACCGCGGAG 59.590 66.667 35.90 20.77 0.00 4.63
1531 2045 4.101448 CCCGACCAGGCCAAGGAG 62.101 72.222 20.01 12.74 39.21 3.69
1532 2046 4.101448 CCGACCAGGCCAAGGAGG 62.101 72.222 20.01 17.04 41.84 4.30
1533 2047 3.322466 CGACCAGGCCAAGGAGGT 61.322 66.667 20.01 11.84 40.61 3.85
1534 2048 2.671682 GACCAGGCCAAGGAGGTC 59.328 66.667 20.01 16.24 44.66 3.85
1535 2049 2.936032 ACCAGGCCAAGGAGGTCC 60.936 66.667 20.01 0.00 45.84 4.46
1546 2060 4.154347 GAGGTCCTGGAGCGGCTG 62.154 72.222 19.30 0.00 35.00 4.85
1558 2072 4.988598 CGGCTGCTCACCGTGGTT 62.989 66.667 0.00 0.00 45.70 3.67
1559 2073 3.357079 GGCTGCTCACCGTGGTTG 61.357 66.667 0.00 0.00 0.00 3.77
1560 2074 3.357079 GCTGCTCACCGTGGTTGG 61.357 66.667 0.00 0.00 0.00 3.77
1561 2075 2.669569 CTGCTCACCGTGGTTGGG 60.670 66.667 0.00 0.00 0.00 4.12
1562 2076 3.164977 TGCTCACCGTGGTTGGGA 61.165 61.111 0.00 0.00 0.00 4.37
1563 2077 2.351276 GCTCACCGTGGTTGGGAT 59.649 61.111 0.00 0.00 0.00 3.85
1564 2078 2.040544 GCTCACCGTGGTTGGGATG 61.041 63.158 0.00 0.00 0.00 3.51
1565 2079 2.033448 TCACCGTGGTTGGGATGC 59.967 61.111 0.00 0.00 0.00 3.91
1566 2080 3.061848 CACCGTGGTTGGGATGCC 61.062 66.667 0.00 0.00 0.00 4.40
1567 2081 4.715523 ACCGTGGTTGGGATGCCG 62.716 66.667 0.00 0.00 0.00 5.69
1568 2082 4.715523 CCGTGGTTGGGATGCCGT 62.716 66.667 0.00 0.00 0.00 5.68
1569 2083 2.266372 CGTGGTTGGGATGCCGTA 59.734 61.111 0.00 0.00 0.00 4.02
1570 2084 1.153249 CGTGGTTGGGATGCCGTAT 60.153 57.895 0.00 0.00 0.00 3.06
1571 2085 1.436195 CGTGGTTGGGATGCCGTATG 61.436 60.000 0.00 0.00 0.00 2.39
1572 2086 0.107410 GTGGTTGGGATGCCGTATGA 60.107 55.000 0.00 0.00 0.00 2.15
1573 2087 0.180171 TGGTTGGGATGCCGTATGAG 59.820 55.000 0.00 0.00 0.00 2.90
1574 2088 0.180406 GGTTGGGATGCCGTATGAGT 59.820 55.000 0.00 0.00 0.00 3.41
1575 2089 1.414919 GGTTGGGATGCCGTATGAGTA 59.585 52.381 0.00 0.00 0.00 2.59
1576 2090 2.480845 GTTGGGATGCCGTATGAGTAC 58.519 52.381 0.00 0.00 0.00 2.73
1577 2091 2.082140 TGGGATGCCGTATGAGTACT 57.918 50.000 0.00 0.00 0.00 2.73
1578 2092 1.961394 TGGGATGCCGTATGAGTACTC 59.039 52.381 16.32 16.32 0.00 2.59
1579 2093 1.272769 GGGATGCCGTATGAGTACTCC 59.727 57.143 20.11 4.06 0.00 3.85
1580 2094 1.272769 GGATGCCGTATGAGTACTCCC 59.727 57.143 20.11 6.83 0.00 4.30
1581 2095 0.959553 ATGCCGTATGAGTACTCCCG 59.040 55.000 20.11 17.54 0.00 5.14
1582 2096 1.105167 TGCCGTATGAGTACTCCCGG 61.105 60.000 27.98 27.98 37.39 5.73
1583 2097 0.820891 GCCGTATGAGTACTCCCGGA 60.821 60.000 32.71 14.39 36.86 5.14
1584 2098 1.236628 CCGTATGAGTACTCCCGGAG 58.763 60.000 28.21 13.31 36.86 4.63
1585 2099 0.592148 CGTATGAGTACTCCCGGAGC 59.408 60.000 20.11 0.00 32.04 4.70
1586 2100 1.814634 CGTATGAGTACTCCCGGAGCT 60.815 57.143 20.11 4.26 32.04 4.09
1587 2101 1.881324 GTATGAGTACTCCCGGAGCTC 59.119 57.143 20.11 13.64 32.04 4.09
1588 2102 0.468400 ATGAGTACTCCCGGAGCTCC 60.468 60.000 23.79 23.79 32.04 4.70
1647 2161 3.885521 GGGACGTCCGCCTCTACG 61.886 72.222 27.68 0.00 44.47 3.51
1657 2171 3.129502 CCTCTACGGCACCGACGA 61.130 66.667 17.40 10.13 42.83 4.20
1658 2172 2.478890 CCTCTACGGCACCGACGAT 61.479 63.158 17.40 0.00 42.83 3.73
1659 2173 1.432251 CTCTACGGCACCGACGATT 59.568 57.895 17.40 0.00 42.83 3.34
1660 2174 0.866061 CTCTACGGCACCGACGATTG 60.866 60.000 17.40 0.00 42.83 2.67
1661 2175 2.507547 TACGGCACCGACGATTGC 60.508 61.111 17.40 11.67 42.83 3.56
1664 2178 3.849953 GGCACCGACGATTGCGAC 61.850 66.667 13.20 0.34 39.81 5.19
1665 2179 3.849953 GCACCGACGATTGCGACC 61.850 66.667 0.00 0.00 41.64 4.79
1666 2180 3.186047 CACCGACGATTGCGACCC 61.186 66.667 0.00 0.00 41.64 4.46
1667 2181 4.446413 ACCGACGATTGCGACCCC 62.446 66.667 0.00 0.00 41.64 4.95
1668 2182 4.143333 CCGACGATTGCGACCCCT 62.143 66.667 0.00 0.00 41.64 4.79
1669 2183 2.582498 CGACGATTGCGACCCCTC 60.582 66.667 0.00 0.00 41.64 4.30
1670 2184 2.202892 GACGATTGCGACCCCTCC 60.203 66.667 0.00 0.00 41.64 4.30
1671 2185 2.683933 ACGATTGCGACCCCTCCT 60.684 61.111 0.00 0.00 41.64 3.69
1672 2186 1.380785 ACGATTGCGACCCCTCCTA 60.381 57.895 0.00 0.00 41.64 2.94
1673 2187 1.067582 CGATTGCGACCCCTCCTAC 59.932 63.158 0.00 0.00 40.82 3.18
1674 2188 1.672854 CGATTGCGACCCCTCCTACA 61.673 60.000 0.00 0.00 40.82 2.74
1675 2189 0.179081 GATTGCGACCCCTCCTACAC 60.179 60.000 0.00 0.00 0.00 2.90
1676 2190 1.623542 ATTGCGACCCCTCCTACACC 61.624 60.000 0.00 0.00 0.00 4.16
1677 2191 3.834799 GCGACCCCTCCTACACCG 61.835 72.222 0.00 0.00 0.00 4.94
1678 2192 2.362120 CGACCCCTCCTACACCGT 60.362 66.667 0.00 0.00 0.00 4.83
1679 2193 2.413142 CGACCCCTCCTACACCGTC 61.413 68.421 0.00 0.00 0.00 4.79
1680 2194 2.038490 ACCCCTCCTACACCGTCC 59.962 66.667 0.00 0.00 0.00 4.79
1681 2195 2.363361 CCCCTCCTACACCGTCCT 59.637 66.667 0.00 0.00 0.00 3.85
1682 2196 1.757340 CCCCTCCTACACCGTCCTC 60.757 68.421 0.00 0.00 0.00 3.71
1683 2197 1.000019 CCCTCCTACACCGTCCTCA 60.000 63.158 0.00 0.00 0.00 3.86
1684 2198 1.321074 CCCTCCTACACCGTCCTCAC 61.321 65.000 0.00 0.00 0.00 3.51
1685 2199 1.654954 CCTCCTACACCGTCCTCACG 61.655 65.000 0.00 0.00 46.29 4.35
1686 2200 2.181021 CCTACACCGTCCTCACGC 59.819 66.667 0.00 0.00 45.29 5.34
1687 2201 2.341101 CCTACACCGTCCTCACGCT 61.341 63.158 0.00 0.00 45.29 5.07
1688 2202 1.136984 CTACACCGTCCTCACGCTC 59.863 63.158 0.00 0.00 45.29 5.03
1689 2203 1.583495 CTACACCGTCCTCACGCTCA 61.583 60.000 0.00 0.00 45.29 4.26
1690 2204 1.174078 TACACCGTCCTCACGCTCAA 61.174 55.000 0.00 0.00 45.29 3.02
1691 2205 1.734477 CACCGTCCTCACGCTCAAG 60.734 63.158 0.00 0.00 45.29 3.02
1692 2206 2.811317 CCGTCCTCACGCTCAAGC 60.811 66.667 0.00 0.00 45.29 4.01
1731 2245 4.717629 CGTCAGCCGCGTTGAGGA 62.718 66.667 19.53 2.62 32.08 3.71
1732 2246 2.811317 GTCAGCCGCGTTGAGGAG 60.811 66.667 4.92 0.00 0.00 3.69
1733 2247 4.069232 TCAGCCGCGTTGAGGAGG 62.069 66.667 4.92 0.00 0.00 4.30
1734 2248 4.379243 CAGCCGCGTTGAGGAGGT 62.379 66.667 4.92 0.00 0.00 3.85
1735 2249 4.070552 AGCCGCGTTGAGGAGGTC 62.071 66.667 4.92 0.00 0.00 3.85
1737 2251 4.052229 CCGCGTTGAGGAGGTCGT 62.052 66.667 4.92 0.00 0.00 4.34
1738 2252 2.805353 CGCGTTGAGGAGGTCGTG 60.805 66.667 0.00 0.00 0.00 4.35
1739 2253 2.432628 GCGTTGAGGAGGTCGTGG 60.433 66.667 0.00 0.00 0.00 4.94
1740 2254 2.927580 GCGTTGAGGAGGTCGTGGA 61.928 63.158 0.00 0.00 0.00 4.02
1741 2255 1.213013 CGTTGAGGAGGTCGTGGAG 59.787 63.158 0.00 0.00 0.00 3.86
1742 2256 1.079750 GTTGAGGAGGTCGTGGAGC 60.080 63.158 0.00 0.00 0.00 4.70
1743 2257 2.283529 TTGAGGAGGTCGTGGAGCC 61.284 63.158 0.00 0.00 0.00 4.70
1744 2258 3.462678 GAGGAGGTCGTGGAGCCC 61.463 72.222 0.00 0.00 0.00 5.19
1747 2261 3.462678 GAGGTCGTGGAGCCCCTC 61.463 72.222 0.00 0.00 36.98 4.30
1776 2290 4.680237 CGCCCTCACCTGCGTTGA 62.680 66.667 0.00 0.00 45.43 3.18
1777 2291 3.050275 GCCCTCACCTGCGTTGAC 61.050 66.667 0.00 0.00 0.00 3.18
1778 2292 2.425592 CCCTCACCTGCGTTGACA 59.574 61.111 0.00 0.00 0.00 3.58
1779 2293 1.227823 CCCTCACCTGCGTTGACAA 60.228 57.895 0.00 0.00 0.00 3.18
1780 2294 1.507141 CCCTCACCTGCGTTGACAAC 61.507 60.000 8.34 8.34 0.00 3.32
1781 2295 1.507141 CCTCACCTGCGTTGACAACC 61.507 60.000 12.66 6.33 0.00 3.77
1782 2296 1.507141 CTCACCTGCGTTGACAACCC 61.507 60.000 12.66 4.36 0.00 4.11
1783 2297 2.203294 ACCTGCGTTGACAACCCC 60.203 61.111 12.66 4.90 0.00 4.95
1784 2298 3.353836 CCTGCGTTGACAACCCCG 61.354 66.667 12.66 2.64 0.00 5.73
1785 2299 4.025401 CTGCGTTGACAACCCCGC 62.025 66.667 12.66 12.89 45.92 6.13
1788 2302 3.353836 CGTTGACAACCCCGCCTG 61.354 66.667 12.66 0.00 0.00 4.85
1789 2303 2.203294 GTTGACAACCCCGCCTGT 60.203 61.111 7.10 0.00 0.00 4.00
1790 2304 2.112297 TTGACAACCCCGCCTGTC 59.888 61.111 0.00 0.00 41.93 3.51
1791 2305 2.448582 TTGACAACCCCGCCTGTCT 61.449 57.895 4.07 0.00 42.06 3.41
1792 2306 2.047179 GACAACCCCGCCTGTCTC 60.047 66.667 0.00 0.00 39.11 3.36
1793 2307 3.934391 GACAACCCCGCCTGTCTCG 62.934 68.421 0.00 0.00 39.11 4.04
1794 2308 4.760047 CAACCCCGCCTGTCTCGG 62.760 72.222 0.00 0.00 46.05 4.63
1803 2317 4.717629 CTGTCTCGGCGCGGTTGA 62.718 66.667 15.06 11.36 0.00 3.18
1805 2319 4.719369 GTCTCGGCGCGGTTGACT 62.719 66.667 24.13 0.00 0.00 3.41
1806 2320 4.415332 TCTCGGCGCGGTTGACTC 62.415 66.667 15.06 0.00 0.00 3.36
1812 2326 4.096003 CGCGGTTGACTCCCCCAT 62.096 66.667 0.00 0.00 0.00 4.00
1813 2327 2.124695 GCGGTTGACTCCCCCATC 60.125 66.667 0.00 0.00 0.00 3.51
1814 2328 2.966732 GCGGTTGACTCCCCCATCA 61.967 63.158 0.00 0.00 0.00 3.07
1815 2329 1.915228 CGGTTGACTCCCCCATCAT 59.085 57.895 0.00 0.00 0.00 2.45
1816 2330 0.179045 CGGTTGACTCCCCCATCATC 60.179 60.000 0.00 0.00 0.00 2.92
1817 2331 0.183731 GGTTGACTCCCCCATCATCC 59.816 60.000 0.00 0.00 0.00 3.51
1818 2332 0.179045 GTTGACTCCCCCATCATCCG 60.179 60.000 0.00 0.00 0.00 4.18
1819 2333 1.344953 TTGACTCCCCCATCATCCGG 61.345 60.000 0.00 0.00 0.00 5.14
1820 2334 3.171388 ACTCCCCCATCATCCGGC 61.171 66.667 0.00 0.00 0.00 6.13
1821 2335 2.851102 CTCCCCCATCATCCGGCT 60.851 66.667 0.00 0.00 0.00 5.52
1822 2336 2.849162 TCCCCCATCATCCGGCTC 60.849 66.667 0.00 0.00 0.00 4.70
1823 2337 3.170672 CCCCCATCATCCGGCTCA 61.171 66.667 0.00 0.00 0.00 4.26
1824 2338 2.532532 CCCCCATCATCCGGCTCAT 61.533 63.158 0.00 0.00 0.00 2.90
1825 2339 1.002868 CCCCATCATCCGGCTCATC 60.003 63.158 0.00 0.00 0.00 2.92
1826 2340 1.486997 CCCCATCATCCGGCTCATCT 61.487 60.000 0.00 0.00 0.00 2.90
1827 2341 0.036577 CCCATCATCCGGCTCATCTC 60.037 60.000 0.00 0.00 0.00 2.75
1828 2342 0.036577 CCATCATCCGGCTCATCTCC 60.037 60.000 0.00 0.00 0.00 3.71
1829 2343 0.389556 CATCATCCGGCTCATCTCCG 60.390 60.000 0.00 0.00 46.05 4.63
1835 2349 3.515611 GGCTCATCTCCGACGAGT 58.484 61.111 0.00 0.00 37.40 4.18
1836 2350 2.704108 GGCTCATCTCCGACGAGTA 58.296 57.895 0.00 0.00 37.40 2.59
1837 2351 0.308376 GGCTCATCTCCGACGAGTAC 59.692 60.000 0.00 0.00 37.40 2.73
1838 2352 0.042013 GCTCATCTCCGACGAGTACG 60.042 60.000 0.00 0.00 45.75 3.67
1865 2379 1.962306 GGGTACAAAGCGCCGTTCA 60.962 57.895 2.29 0.00 0.00 3.18
1961 2475 0.729816 GCTCGACGAGACACACTTCC 60.730 60.000 28.43 3.35 0.00 3.46
1966 2480 2.800544 CGACGAGACACACTTCCATTTT 59.199 45.455 0.00 0.00 0.00 1.82
2068 2582 1.400737 GGGTGCCGTATGAGTACTCT 58.599 55.000 23.01 11.45 0.00 3.24
2401 2916 0.846693 ACAACCACTGGGAAGAAGCT 59.153 50.000 0.00 0.00 38.05 3.74
2546 3063 7.774157 ACGGACTACATTCGGATGTATATAGAT 59.226 37.037 16.89 0.00 45.20 1.98
2666 3183 6.710744 AGGAACAAACTGAATTTCGTATGTCT 59.289 34.615 0.00 0.00 0.00 3.41
2762 3279 1.494721 TGGGCATCCTTAGATTCACCC 59.505 52.381 0.00 0.00 37.77 4.61
2803 3320 1.358152 TGTCTTAACCCACCTCCCTG 58.642 55.000 0.00 0.00 0.00 4.45
2804 3321 1.132657 TGTCTTAACCCACCTCCCTGA 60.133 52.381 0.00 0.00 0.00 3.86
2805 3322 2.197465 GTCTTAACCCACCTCCCTGAT 58.803 52.381 0.00 0.00 0.00 2.90
2806 3323 2.092914 GTCTTAACCCACCTCCCTGATG 60.093 54.545 0.00 0.00 0.00 3.07
2807 3324 2.196595 CTTAACCCACCTCCCTGATGA 58.803 52.381 0.00 0.00 0.00 2.92
2808 3325 1.879575 TAACCCACCTCCCTGATGAG 58.120 55.000 0.00 0.00 0.00 2.90
2809 3326 0.178861 AACCCACCTCCCTGATGAGT 60.179 55.000 0.00 0.00 0.00 3.41
2810 3327 0.178861 ACCCACCTCCCTGATGAGTT 60.179 55.000 0.00 0.00 0.00 3.01
2811 3328 0.254178 CCCACCTCCCTGATGAGTTG 59.746 60.000 0.00 0.00 0.00 3.16
2812 3329 0.393537 CCACCTCCCTGATGAGTTGC 60.394 60.000 0.00 0.00 0.00 4.17
2813 3330 0.617413 CACCTCCCTGATGAGTTGCT 59.383 55.000 0.00 0.00 0.00 3.91
2814 3331 1.004044 CACCTCCCTGATGAGTTGCTT 59.996 52.381 0.00 0.00 0.00 3.91
2815 3332 1.280421 ACCTCCCTGATGAGTTGCTTC 59.720 52.381 0.00 0.00 0.00 3.86
2816 3333 1.558756 CCTCCCTGATGAGTTGCTTCT 59.441 52.381 0.00 0.00 0.00 2.85
2817 3334 2.026449 CCTCCCTGATGAGTTGCTTCTT 60.026 50.000 0.00 0.00 0.00 2.52
2818 3335 3.008330 CTCCCTGATGAGTTGCTTCTTG 58.992 50.000 0.00 0.00 0.00 3.02
2819 3336 2.373169 TCCCTGATGAGTTGCTTCTTGT 59.627 45.455 0.00 0.00 0.00 3.16
2820 3337 2.746362 CCCTGATGAGTTGCTTCTTGTC 59.254 50.000 0.00 0.00 0.00 3.18
2821 3338 3.558746 CCCTGATGAGTTGCTTCTTGTCT 60.559 47.826 0.00 0.00 0.00 3.41
2822 3339 4.070716 CCTGATGAGTTGCTTCTTGTCTT 58.929 43.478 0.00 0.00 0.00 3.01
2823 3340 5.240891 CCTGATGAGTTGCTTCTTGTCTTA 58.759 41.667 0.00 0.00 0.00 2.10
2824 3341 5.702670 CCTGATGAGTTGCTTCTTGTCTTAA 59.297 40.000 0.00 0.00 0.00 1.85
2825 3342 6.348050 CCTGATGAGTTGCTTCTTGTCTTAAC 60.348 42.308 0.00 0.00 0.00 2.01
2826 3343 5.470098 TGATGAGTTGCTTCTTGTCTTAACC 59.530 40.000 0.00 0.00 0.00 2.85
2827 3344 4.134563 TGAGTTGCTTCTTGTCTTAACCC 58.865 43.478 0.00 0.00 0.00 4.11
2828 3345 4.134563 GAGTTGCTTCTTGTCTTAACCCA 58.865 43.478 0.00 0.00 0.00 4.51
2829 3346 3.883489 AGTTGCTTCTTGTCTTAACCCAC 59.117 43.478 0.00 0.00 0.00 4.61
2830 3347 2.858745 TGCTTCTTGTCTTAACCCACC 58.141 47.619 0.00 0.00 0.00 4.61
2831 3348 2.441750 TGCTTCTTGTCTTAACCCACCT 59.558 45.455 0.00 0.00 0.00 4.00
2832 3349 3.075148 GCTTCTTGTCTTAACCCACCTC 58.925 50.000 0.00 0.00 0.00 3.85
2833 3350 3.676093 CTTCTTGTCTTAACCCACCTCC 58.324 50.000 0.00 0.00 0.00 4.30
2834 3351 1.982958 TCTTGTCTTAACCCACCTCCC 59.017 52.381 0.00 0.00 0.00 4.30
2835 3352 1.985895 CTTGTCTTAACCCACCTCCCT 59.014 52.381 0.00 0.00 0.00 4.20
2889 3406 5.107133 CGGTCATCGTTGGTATCTAAGTTT 58.893 41.667 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.713271 AGAAGCAATAAAGTAAATATAGCGAGC 58.287 33.333 0.00 0.00 0.00 5.03
58 59 6.036470 GGTTTGCAAGATAATAAAGAGCACC 58.964 40.000 0.00 0.00 0.00 5.01
146 147 2.229543 ACCGATACAACTCTACGCACAA 59.770 45.455 0.00 0.00 0.00 3.33
147 148 1.814394 ACCGATACAACTCTACGCACA 59.186 47.619 0.00 0.00 0.00 4.57
211 212 0.599558 TAGAGTGTCGAACCCAACGG 59.400 55.000 0.00 0.00 0.00 4.44
294 299 0.824109 CTATGACTCCCCAGCAACGA 59.176 55.000 0.00 0.00 0.00 3.85
390 396 7.712205 GCGTTTCCTACCCATAACTAAAGATAA 59.288 37.037 0.00 0.00 0.00 1.75
487 494 7.765695 AGATGATCCAAGTAAAAAGCTTCAA 57.234 32.000 0.00 0.00 0.00 2.69
561 570 5.752892 ACAAGCATGCTCATCTAAGATTG 57.247 39.130 22.93 13.66 0.00 2.67
637 648 2.598589 CAAGCATAGCATTGCAAACGT 58.401 42.857 11.91 0.00 45.23 3.99
703 717 3.255642 CACATTGGTAGGGAAGGTGTTTG 59.744 47.826 0.00 0.00 31.94 2.93
848 862 2.214920 AGTGGAGGGTGGGACGAAC 61.215 63.158 0.00 0.00 0.00 3.95
1009 1039 1.694696 GGGGATACGGAGCTTGATCTT 59.305 52.381 0.00 0.00 37.60 2.40
1211 1634 3.308878 GACACCGGCGTTGATGCAC 62.309 63.158 12.53 0.00 36.28 4.57
1212 1635 3.047280 GACACCGGCGTTGATGCA 61.047 61.111 12.53 0.00 36.28 3.96
1235 1659 1.816863 GCTCCACGACCTCCTCAACA 61.817 60.000 0.00 0.00 0.00 3.33
1400 1914 1.143183 GATCATACACACCGCGGGT 59.857 57.895 31.76 21.42 35.62 5.28
1401 1915 0.597637 GAGATCATACACACCGCGGG 60.598 60.000 31.76 20.69 0.00 6.13
1402 1916 0.102300 TGAGATCATACACACCGCGG 59.898 55.000 26.86 26.86 0.00 6.46
1403 1917 1.854743 CTTGAGATCATACACACCGCG 59.145 52.381 0.00 0.00 0.00 6.46
1404 1918 2.159099 TCCTTGAGATCATACACACCGC 60.159 50.000 0.00 0.00 0.00 5.68
1405 1919 3.491619 CCTCCTTGAGATCATACACACCG 60.492 52.174 0.00 0.00 0.00 4.94
1406 1920 3.181461 CCCTCCTTGAGATCATACACACC 60.181 52.174 0.00 0.00 0.00 4.16
1407 1921 3.742640 GCCCTCCTTGAGATCATACACAC 60.743 52.174 0.00 0.00 0.00 3.82
1408 1922 2.435805 GCCCTCCTTGAGATCATACACA 59.564 50.000 0.00 0.00 0.00 3.72
1409 1923 2.546795 CGCCCTCCTTGAGATCATACAC 60.547 54.545 0.00 0.00 0.00 2.90
1410 1924 1.688735 CGCCCTCCTTGAGATCATACA 59.311 52.381 0.00 0.00 0.00 2.29
1411 1925 1.964223 TCGCCCTCCTTGAGATCATAC 59.036 52.381 0.00 0.00 0.00 2.39
1412 1926 2.242926 CTCGCCCTCCTTGAGATCATA 58.757 52.381 0.00 0.00 31.31 2.15
1413 1927 1.047002 CTCGCCCTCCTTGAGATCAT 58.953 55.000 0.00 0.00 31.31 2.45
1414 1928 1.045350 CCTCGCCCTCCTTGAGATCA 61.045 60.000 0.00 0.00 31.31 2.92
1415 1929 1.745264 CCTCGCCCTCCTTGAGATC 59.255 63.158 0.00 0.00 31.31 2.75
1416 1930 1.764054 CCCTCGCCCTCCTTGAGAT 60.764 63.158 0.00 0.00 31.31 2.75
1417 1931 2.364317 CCCTCGCCCTCCTTGAGA 60.364 66.667 0.00 0.00 31.31 3.27
1418 1932 2.364317 TCCCTCGCCCTCCTTGAG 60.364 66.667 0.00 0.00 0.00 3.02
1419 1933 2.683933 GTCCCTCGCCCTCCTTGA 60.684 66.667 0.00 0.00 0.00 3.02
1420 1934 3.003173 TGTCCCTCGCCCTCCTTG 61.003 66.667 0.00 0.00 0.00 3.61
1421 1935 2.685380 CTGTCCCTCGCCCTCCTT 60.685 66.667 0.00 0.00 0.00 3.36
1422 1936 4.787280 CCTGTCCCTCGCCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
1430 1944 3.775654 CACGAGCCCCTGTCCCTC 61.776 72.222 0.00 0.00 0.00 4.30
1433 1947 3.075005 TAGCACGAGCCCCTGTCC 61.075 66.667 0.00 0.00 43.56 4.02
1434 1948 2.010582 CTCTAGCACGAGCCCCTGTC 62.011 65.000 0.00 0.00 43.56 3.51
1435 1949 2.037367 TCTAGCACGAGCCCCTGT 59.963 61.111 0.00 0.00 43.56 4.00
1436 1950 2.811101 CTCTAGCACGAGCCCCTG 59.189 66.667 0.00 0.00 43.56 4.45
1445 1959 0.027063 GTCTCGTCGAGCTCTAGCAC 59.973 60.000 17.61 4.88 45.16 4.40
1446 1960 0.391263 TGTCTCGTCGAGCTCTAGCA 60.391 55.000 17.61 6.41 45.16 3.49
1447 1961 0.027063 GTGTCTCGTCGAGCTCTAGC 59.973 60.000 17.61 0.56 42.49 3.42
1448 1962 1.061421 GTGTGTCTCGTCGAGCTCTAG 59.939 57.143 17.61 4.17 0.00 2.43
1449 1963 1.077123 GTGTGTCTCGTCGAGCTCTA 58.923 55.000 17.61 0.00 0.00 2.43
1450 1964 0.604243 AGTGTGTCTCGTCGAGCTCT 60.604 55.000 17.61 7.17 0.00 4.09
1451 1965 0.238817 AAGTGTGTCTCGTCGAGCTC 59.761 55.000 17.61 12.75 0.00 4.09
1452 1966 0.238817 GAAGTGTGTCTCGTCGAGCT 59.761 55.000 17.61 5.48 0.00 4.09
1453 1967 1.060726 CGAAGTGTGTCTCGTCGAGC 61.061 60.000 17.61 12.69 38.59 5.03
1454 1968 0.511653 TCGAAGTGTGTCTCGTCGAG 59.488 55.000 16.33 16.33 39.77 4.04
1455 1969 1.154197 ATCGAAGTGTGTCTCGTCGA 58.846 50.000 10.69 10.69 45.63 4.20
1456 1970 1.965083 AATCGAAGTGTGTCTCGTCG 58.035 50.000 0.00 0.00 37.92 5.12
1457 1971 2.338813 CGAAATCGAAGTGTGTCTCGTC 59.661 50.000 0.00 0.00 43.02 4.20
1458 1972 2.031420 TCGAAATCGAAGTGTGTCTCGT 60.031 45.455 2.51 0.00 46.30 4.18
1459 1973 2.581637 TCGAAATCGAAGTGTGTCTCG 58.418 47.619 2.51 0.00 46.30 4.04
1471 1985 4.327357 AGCTCATAGTTTGTGTCGAAATCG 59.673 41.667 0.00 0.00 41.45 3.34
1472 1986 5.446473 CCAGCTCATAGTTTGTGTCGAAATC 60.446 44.000 0.00 0.00 0.00 2.17
1473 1987 4.393062 CCAGCTCATAGTTTGTGTCGAAAT 59.607 41.667 0.00 0.00 0.00 2.17
1474 1988 3.745975 CCAGCTCATAGTTTGTGTCGAAA 59.254 43.478 0.00 0.00 0.00 3.46
1475 1989 3.006430 TCCAGCTCATAGTTTGTGTCGAA 59.994 43.478 0.00 0.00 0.00 3.71
1476 1990 2.560981 TCCAGCTCATAGTTTGTGTCGA 59.439 45.455 0.00 0.00 0.00 4.20
1477 1991 2.926200 CTCCAGCTCATAGTTTGTGTCG 59.074 50.000 0.00 0.00 0.00 4.35
1478 1992 3.681897 CACTCCAGCTCATAGTTTGTGTC 59.318 47.826 0.00 0.00 0.00 3.67
1479 1993 3.668447 CACTCCAGCTCATAGTTTGTGT 58.332 45.455 0.00 0.00 0.00 3.72
1480 1994 2.417933 GCACTCCAGCTCATAGTTTGTG 59.582 50.000 0.00 0.00 0.00 3.33
1481 1995 2.304180 AGCACTCCAGCTCATAGTTTGT 59.696 45.455 0.00 0.00 42.18 2.83
1482 1996 2.983229 AGCACTCCAGCTCATAGTTTG 58.017 47.619 0.00 0.00 42.18 2.93
1483 1997 4.026744 TCTAGCACTCCAGCTCATAGTTT 58.973 43.478 0.00 0.00 45.26 2.66
1484 1998 3.383185 GTCTAGCACTCCAGCTCATAGTT 59.617 47.826 0.00 0.00 45.26 2.24
1485 1999 2.955660 GTCTAGCACTCCAGCTCATAGT 59.044 50.000 0.00 0.00 45.26 2.12
1486 2000 2.295909 GGTCTAGCACTCCAGCTCATAG 59.704 54.545 0.00 0.00 45.26 2.23
1487 2001 2.311463 GGTCTAGCACTCCAGCTCATA 58.689 52.381 0.00 0.00 45.26 2.15
1488 2002 1.118838 GGTCTAGCACTCCAGCTCAT 58.881 55.000 0.00 0.00 45.26 2.90
1489 2003 1.315981 CGGTCTAGCACTCCAGCTCA 61.316 60.000 0.00 0.00 45.26 4.26
1490 2004 1.435515 CGGTCTAGCACTCCAGCTC 59.564 63.158 0.00 0.00 45.26 4.09
1492 2006 2.202810 GCGGTCTAGCACTCCAGC 60.203 66.667 0.00 0.00 37.05 4.85
1493 2007 2.103143 CGCGGTCTAGCACTCCAG 59.897 66.667 0.00 0.00 36.85 3.86
1494 2008 3.449227 CCGCGGTCTAGCACTCCA 61.449 66.667 19.50 0.00 36.85 3.86
1495 2009 3.127352 CTCCGCGGTCTAGCACTCC 62.127 68.421 27.15 0.00 36.85 3.85
1496 2010 2.409651 CTCCGCGGTCTAGCACTC 59.590 66.667 27.15 0.00 36.85 3.51
1497 2011 3.827898 GCTCCGCGGTCTAGCACT 61.828 66.667 27.09 0.00 36.26 4.40
1498 2012 4.874977 GGCTCCGCGGTCTAGCAC 62.875 72.222 31.01 19.83 38.01 4.40
1514 2028 4.101448 CTCCTTGGCCTGGTCGGG 62.101 72.222 3.32 4.07 0.00 5.14
1515 2029 4.101448 CCTCCTTGGCCTGGTCGG 62.101 72.222 3.32 8.00 0.00 4.79
1516 2030 3.316573 GACCTCCTTGGCCTGGTCG 62.317 68.421 3.32 3.86 39.39 4.79
1517 2031 2.671682 GACCTCCTTGGCCTGGTC 59.328 66.667 3.32 10.20 41.52 4.02
1518 2032 2.936032 GGACCTCCTTGGCCTGGT 60.936 66.667 3.32 4.40 40.22 4.00
1519 2033 2.612115 AGGACCTCCTTGGCCTGG 60.612 66.667 3.32 6.67 46.09 4.45
1520 2034 2.673523 CAGGACCTCCTTGGCCTG 59.326 66.667 3.32 0.00 46.09 4.85
1521 2035 2.612115 CCAGGACCTCCTTGGCCT 60.612 66.667 3.32 0.00 46.09 5.19
1522 2036 2.610859 TCCAGGACCTCCTTGGCC 60.611 66.667 0.00 0.00 46.09 5.36
1523 2037 2.993853 CTCCAGGACCTCCTTGGC 59.006 66.667 0.00 0.00 46.09 4.52
1524 2038 2.993853 GCTCCAGGACCTCCTTGG 59.006 66.667 0.00 0.00 46.09 3.61
1525 2039 2.581354 CGCTCCAGGACCTCCTTG 59.419 66.667 0.00 0.00 46.09 3.61
1526 2040 2.685380 CCGCTCCAGGACCTCCTT 60.685 66.667 0.00 0.00 46.09 3.36
1529 2043 4.154347 CAGCCGCTCCAGGACCTC 62.154 72.222 0.00 0.00 0.00 3.85
1542 2056 3.357079 CAACCACGGTGAGCAGCC 61.357 66.667 10.28 0.00 0.00 4.85
1543 2057 3.357079 CCAACCACGGTGAGCAGC 61.357 66.667 10.28 0.00 0.00 5.25
1544 2058 2.469465 ATCCCAACCACGGTGAGCAG 62.469 60.000 10.28 0.00 0.00 4.24
1545 2059 2.525124 ATCCCAACCACGGTGAGCA 61.525 57.895 10.28 0.00 0.00 4.26
1546 2060 2.040544 CATCCCAACCACGGTGAGC 61.041 63.158 10.28 0.00 0.00 4.26
1547 2061 2.040544 GCATCCCAACCACGGTGAG 61.041 63.158 10.28 2.33 0.00 3.51
1548 2062 2.033448 GCATCCCAACCACGGTGA 59.967 61.111 10.28 0.00 0.00 4.02
1549 2063 3.061848 GGCATCCCAACCACGGTG 61.062 66.667 0.00 0.00 0.00 4.94
1550 2064 4.715523 CGGCATCCCAACCACGGT 62.716 66.667 0.00 0.00 0.00 4.83
1551 2065 2.602746 ATACGGCATCCCAACCACGG 62.603 60.000 0.00 0.00 0.00 4.94
1552 2066 1.153249 ATACGGCATCCCAACCACG 60.153 57.895 0.00 0.00 0.00 4.94
1553 2067 0.107410 TCATACGGCATCCCAACCAC 60.107 55.000 0.00 0.00 0.00 4.16
1554 2068 0.180171 CTCATACGGCATCCCAACCA 59.820 55.000 0.00 0.00 0.00 3.67
1555 2069 0.180406 ACTCATACGGCATCCCAACC 59.820 55.000 0.00 0.00 0.00 3.77
1556 2070 2.102588 AGTACTCATACGGCATCCCAAC 59.897 50.000 0.00 0.00 36.33 3.77
1557 2071 2.364324 GAGTACTCATACGGCATCCCAA 59.636 50.000 18.20 0.00 36.33 4.12
1558 2072 1.961394 GAGTACTCATACGGCATCCCA 59.039 52.381 18.20 0.00 36.33 4.37
1559 2073 1.272769 GGAGTACTCATACGGCATCCC 59.727 57.143 23.91 0.00 36.33 3.85
1560 2074 1.272769 GGGAGTACTCATACGGCATCC 59.727 57.143 23.91 8.99 36.33 3.51
1561 2075 1.068472 CGGGAGTACTCATACGGCATC 60.068 57.143 23.91 3.52 36.33 3.91
1562 2076 0.959553 CGGGAGTACTCATACGGCAT 59.040 55.000 23.91 0.00 36.33 4.40
1563 2077 1.105167 CCGGGAGTACTCATACGGCA 61.105 60.000 28.09 0.00 36.60 5.69
1564 2078 0.820891 TCCGGGAGTACTCATACGGC 60.821 60.000 31.46 14.31 40.33 5.68
1565 2079 1.236628 CTCCGGGAGTACTCATACGG 58.763 60.000 30.91 30.91 41.19 4.02
1566 2080 0.592148 GCTCCGGGAGTACTCATACG 59.408 60.000 24.30 21.80 36.33 3.06
1567 2081 1.881324 GAGCTCCGGGAGTACTCATAC 59.119 57.143 24.30 12.38 31.39 2.39
1568 2082 1.202903 GGAGCTCCGGGAGTACTCATA 60.203 57.143 24.30 5.51 31.39 2.15
1569 2083 0.468400 GGAGCTCCGGGAGTACTCAT 60.468 60.000 24.30 5.03 31.39 2.90
1570 2084 1.076923 GGAGCTCCGGGAGTACTCA 60.077 63.158 24.30 2.85 31.39 3.41
1571 2085 3.844741 GGAGCTCCGGGAGTACTC 58.155 66.667 24.30 20.90 31.39 2.59
1630 2144 3.885521 CGTAGAGGCGGACGTCCC 61.886 72.222 28.52 20.04 34.39 4.46
1640 2154 2.001361 AATCGTCGGTGCCGTAGAGG 62.001 60.000 10.60 0.00 44.97 3.69
1641 2155 0.866061 CAATCGTCGGTGCCGTAGAG 60.866 60.000 10.60 1.55 40.74 2.43
1642 2156 1.138036 CAATCGTCGGTGCCGTAGA 59.862 57.895 10.60 11.06 40.74 2.59
1643 2157 2.514013 GCAATCGTCGGTGCCGTAG 61.514 63.158 10.60 6.19 40.74 3.51
1644 2158 2.507547 GCAATCGTCGGTGCCGTA 60.508 61.111 10.60 0.00 40.74 4.02
1647 2161 3.849953 GTCGCAATCGTCGGTGCC 61.850 66.667 13.83 0.95 37.47 5.01
1648 2162 3.849953 GGTCGCAATCGTCGGTGC 61.850 66.667 10.65 10.65 37.40 5.01
1649 2163 3.186047 GGGTCGCAATCGTCGGTG 61.186 66.667 0.00 0.00 36.96 4.94
1650 2164 4.446413 GGGGTCGCAATCGTCGGT 62.446 66.667 0.00 0.00 36.96 4.69
1651 2165 4.143333 AGGGGTCGCAATCGTCGG 62.143 66.667 0.00 0.00 36.96 4.79
1652 2166 2.582498 GAGGGGTCGCAATCGTCG 60.582 66.667 0.00 0.00 36.96 5.12
1653 2167 1.389609 TAGGAGGGGTCGCAATCGTC 61.390 60.000 0.00 0.00 36.96 4.20
1654 2168 1.380785 TAGGAGGGGTCGCAATCGT 60.381 57.895 0.00 0.00 36.96 3.73
1655 2169 1.067582 GTAGGAGGGGTCGCAATCG 59.932 63.158 0.00 0.00 0.00 3.34
1656 2170 0.179081 GTGTAGGAGGGGTCGCAATC 60.179 60.000 0.00 0.00 0.00 2.67
1657 2171 1.623542 GGTGTAGGAGGGGTCGCAAT 61.624 60.000 0.00 0.00 0.00 3.56
1658 2172 2.288025 GGTGTAGGAGGGGTCGCAA 61.288 63.158 0.00 0.00 0.00 4.85
1659 2173 2.682494 GGTGTAGGAGGGGTCGCA 60.682 66.667 0.00 0.00 0.00 5.10
1660 2174 3.834799 CGGTGTAGGAGGGGTCGC 61.835 72.222 0.00 0.00 0.00 5.19
1661 2175 2.362120 ACGGTGTAGGAGGGGTCG 60.362 66.667 0.00 0.00 0.00 4.79
1662 2176 2.056815 GGACGGTGTAGGAGGGGTC 61.057 68.421 0.00 0.00 0.00 4.46
1663 2177 2.038490 GGACGGTGTAGGAGGGGT 59.962 66.667 0.00 0.00 0.00 4.95
1664 2178 1.757340 GAGGACGGTGTAGGAGGGG 60.757 68.421 0.00 0.00 0.00 4.79
1665 2179 1.000019 TGAGGACGGTGTAGGAGGG 60.000 63.158 0.00 0.00 0.00 4.30
1666 2180 1.654954 CGTGAGGACGGTGTAGGAGG 61.655 65.000 0.00 0.00 42.18 4.30
1667 2181 1.801332 CGTGAGGACGGTGTAGGAG 59.199 63.158 0.00 0.00 42.18 3.69
1668 2182 2.338015 GCGTGAGGACGGTGTAGGA 61.338 63.158 0.00 0.00 46.20 2.94
1669 2183 2.181021 GCGTGAGGACGGTGTAGG 59.819 66.667 0.00 0.00 46.20 3.18
1675 2189 2.811317 GCTTGAGCGTGAGGACGG 60.811 66.667 0.00 0.00 46.20 4.79
1715 2229 2.811317 CTCCTCAACGCGGCTGAC 60.811 66.667 12.47 0.00 0.00 3.51
1716 2230 4.069232 CCTCCTCAACGCGGCTGA 62.069 66.667 12.47 12.15 0.00 4.26
1717 2231 4.379243 ACCTCCTCAACGCGGCTG 62.379 66.667 12.47 7.70 0.00 4.85
1718 2232 4.070552 GACCTCCTCAACGCGGCT 62.071 66.667 12.47 0.00 0.00 5.52
1720 2234 4.052229 ACGACCTCCTCAACGCGG 62.052 66.667 12.47 0.00 0.00 6.46
1721 2235 2.805353 CACGACCTCCTCAACGCG 60.805 66.667 3.53 3.53 0.00 6.01
1722 2236 2.432628 CCACGACCTCCTCAACGC 60.433 66.667 0.00 0.00 0.00 4.84
1723 2237 1.213013 CTCCACGACCTCCTCAACG 59.787 63.158 0.00 0.00 0.00 4.10
1724 2238 1.079750 GCTCCACGACCTCCTCAAC 60.080 63.158 0.00 0.00 0.00 3.18
1725 2239 2.283529 GGCTCCACGACCTCCTCAA 61.284 63.158 0.00 0.00 0.00 3.02
1726 2240 2.680352 GGCTCCACGACCTCCTCA 60.680 66.667 0.00 0.00 0.00 3.86
1727 2241 3.462678 GGGCTCCACGACCTCCTC 61.463 72.222 0.00 0.00 38.04 3.71
1730 2244 3.462678 GAGGGGCTCCACGACCTC 61.463 72.222 4.79 0.00 42.26 3.85
1760 2274 3.050275 GTCAACGCAGGTGAGGGC 61.050 66.667 0.00 0.00 0.00 5.19
1761 2275 1.227823 TTGTCAACGCAGGTGAGGG 60.228 57.895 0.00 0.00 0.00 4.30
1762 2276 1.507141 GGTTGTCAACGCAGGTGAGG 61.507 60.000 9.57 0.00 0.00 3.86
1763 2277 1.507141 GGGTTGTCAACGCAGGTGAG 61.507 60.000 23.67 0.00 43.18 3.51
1764 2278 1.525077 GGGTTGTCAACGCAGGTGA 60.525 57.895 23.67 0.00 43.18 4.02
1765 2279 2.551912 GGGGTTGTCAACGCAGGTG 61.552 63.158 27.87 0.00 45.24 4.00
1766 2280 2.203294 GGGGTTGTCAACGCAGGT 60.203 61.111 27.87 0.00 45.24 4.00
1767 2281 3.353836 CGGGGTTGTCAACGCAGG 61.354 66.667 27.87 17.88 45.24 4.85
1771 2285 3.353836 CAGGCGGGGTTGTCAACG 61.354 66.667 9.57 0.00 0.00 4.10
1772 2286 2.203294 ACAGGCGGGGTTGTCAAC 60.203 61.111 7.20 7.20 0.00 3.18
1773 2287 2.112297 GACAGGCGGGGTTGTCAA 59.888 61.111 0.00 0.00 42.47 3.18
1774 2288 2.847234 AGACAGGCGGGGTTGTCA 60.847 61.111 6.60 0.00 44.72 3.58
1775 2289 2.047179 GAGACAGGCGGGGTTGTC 60.047 66.667 0.00 0.00 43.08 3.18
1776 2290 4.003788 CGAGACAGGCGGGGTTGT 62.004 66.667 0.00 0.00 0.00 3.32
1777 2291 4.760047 CCGAGACAGGCGGGGTTG 62.760 72.222 0.00 0.00 44.87 3.77
1786 2300 4.717629 TCAACCGCGCCGAGACAG 62.718 66.667 0.00 0.00 0.00 3.51
1788 2302 4.719369 AGTCAACCGCGCCGAGAC 62.719 66.667 0.00 9.66 0.00 3.36
1789 2303 4.415332 GAGTCAACCGCGCCGAGA 62.415 66.667 0.00 0.00 0.00 4.04
1795 2309 4.096003 ATGGGGGAGTCAACCGCG 62.096 66.667 0.00 0.00 43.29 6.46
1796 2310 2.124695 GATGGGGGAGTCAACCGC 60.125 66.667 0.00 0.00 41.28 5.68
1797 2311 0.179045 GATGATGGGGGAGTCAACCG 60.179 60.000 0.00 0.00 0.00 4.44
1798 2312 0.183731 GGATGATGGGGGAGTCAACC 59.816 60.000 0.00 0.00 31.46 3.77
1799 2313 0.179045 CGGATGATGGGGGAGTCAAC 60.179 60.000 0.00 0.00 0.00 3.18
1800 2314 1.344953 CCGGATGATGGGGGAGTCAA 61.345 60.000 0.00 0.00 0.00 3.18
1801 2315 1.766059 CCGGATGATGGGGGAGTCA 60.766 63.158 0.00 0.00 0.00 3.41
1802 2316 3.151906 CCGGATGATGGGGGAGTC 58.848 66.667 0.00 0.00 0.00 3.36
1803 2317 3.171388 GCCGGATGATGGGGGAGT 61.171 66.667 5.05 0.00 0.00 3.85
1804 2318 2.851102 AGCCGGATGATGGGGGAG 60.851 66.667 5.05 0.00 0.00 4.30
1805 2319 2.849162 GAGCCGGATGATGGGGGA 60.849 66.667 5.05 0.00 0.00 4.81
1806 2320 2.475371 GATGAGCCGGATGATGGGGG 62.475 65.000 5.05 0.00 0.00 5.40
1807 2321 1.002868 GATGAGCCGGATGATGGGG 60.003 63.158 5.05 0.00 0.00 4.96
1808 2322 0.036577 GAGATGAGCCGGATGATGGG 60.037 60.000 5.05 0.00 0.00 4.00
1809 2323 0.036577 GGAGATGAGCCGGATGATGG 60.037 60.000 5.05 0.00 0.00 3.51
1810 2324 0.389556 CGGAGATGAGCCGGATGATG 60.390 60.000 5.05 0.00 44.87 3.07
1811 2325 1.970639 CGGAGATGAGCCGGATGAT 59.029 57.895 5.05 0.00 44.87 2.45
1812 2326 3.448194 CGGAGATGAGCCGGATGA 58.552 61.111 5.05 0.00 44.87 2.92
1839 2353 3.484547 CTTTGTACCCGCCGACGC 61.485 66.667 0.00 0.00 38.22 5.19
1840 2354 3.484547 GCTTTGTACCCGCCGACG 61.485 66.667 0.00 0.00 39.67 5.12
1841 2355 3.484547 CGCTTTGTACCCGCCGAC 61.485 66.667 0.00 0.00 0.00 4.79
1846 2360 3.018840 GAACGGCGCTTTGTACCCG 62.019 63.158 6.90 1.41 45.80 5.28
1847 2361 1.303091 ATGAACGGCGCTTTGTACCC 61.303 55.000 6.90 0.00 0.00 3.69
1848 2362 0.096454 GATGAACGGCGCTTTGTACC 59.904 55.000 6.90 0.85 0.00 3.34
1849 2363 1.076332 AGATGAACGGCGCTTTGTAC 58.924 50.000 6.90 0.00 0.00 2.90
1850 2364 1.075542 CAGATGAACGGCGCTTTGTA 58.924 50.000 6.90 0.00 0.00 2.41
1851 2365 1.868997 CAGATGAACGGCGCTTTGT 59.131 52.632 6.90 0.12 0.00 2.83
1852 2366 1.512734 GCAGATGAACGGCGCTTTG 60.513 57.895 6.90 0.00 0.00 2.77
1961 2475 2.979813 GCTCGTAGTTTGTGCCAAAATG 59.020 45.455 9.79 0.33 0.00 2.32
1966 2480 0.602638 CCAGCTCGTAGTTTGTGCCA 60.603 55.000 0.00 0.00 0.00 4.92
2068 2582 1.933181 CATGCGAACTTATTGCTCCGA 59.067 47.619 0.00 0.00 0.00 4.55
2401 2916 0.844661 AACCAGACATACCAGCCCCA 60.845 55.000 0.00 0.00 0.00 4.96
2666 3183 1.637338 TTGCCCATAACAATGTGGCA 58.363 45.000 10.58 10.58 42.18 4.92
2691 3208 3.753272 GTGTGGTGAGACTGCAATAACAT 59.247 43.478 0.00 0.00 0.00 2.71
2762 3279 1.633915 AAGCAGCTCATCAGGGAGGG 61.634 60.000 0.00 0.00 35.41 4.30
2803 3320 5.106515 GGGTTAAGACAAGAAGCAACTCATC 60.107 44.000 0.00 0.00 0.00 2.92
2804 3321 4.762251 GGGTTAAGACAAGAAGCAACTCAT 59.238 41.667 0.00 0.00 0.00 2.90
2805 3322 4.134563 GGGTTAAGACAAGAAGCAACTCA 58.865 43.478 0.00 0.00 0.00 3.41
2806 3323 4.023963 GTGGGTTAAGACAAGAAGCAACTC 60.024 45.833 0.00 0.00 0.00 3.01
2807 3324 3.883489 GTGGGTTAAGACAAGAAGCAACT 59.117 43.478 0.00 0.00 0.00 3.16
2808 3325 3.004419 GGTGGGTTAAGACAAGAAGCAAC 59.996 47.826 0.00 0.00 0.00 4.17
2809 3326 3.117663 AGGTGGGTTAAGACAAGAAGCAA 60.118 43.478 0.00 0.00 0.00 3.91
2810 3327 2.441750 AGGTGGGTTAAGACAAGAAGCA 59.558 45.455 0.00 0.00 0.00 3.91
2811 3328 3.075148 GAGGTGGGTTAAGACAAGAAGC 58.925 50.000 0.00 0.00 0.00 3.86
2812 3329 3.559384 GGGAGGTGGGTTAAGACAAGAAG 60.559 52.174 0.00 0.00 0.00 2.85
2813 3330 2.374170 GGGAGGTGGGTTAAGACAAGAA 59.626 50.000 0.00 0.00 0.00 2.52
2814 3331 1.982958 GGGAGGTGGGTTAAGACAAGA 59.017 52.381 0.00 0.00 0.00 3.02
2815 3332 1.985895 AGGGAGGTGGGTTAAGACAAG 59.014 52.381 0.00 0.00 0.00 3.16
2816 3333 1.702957 CAGGGAGGTGGGTTAAGACAA 59.297 52.381 0.00 0.00 0.00 3.18
2817 3334 1.132657 TCAGGGAGGTGGGTTAAGACA 60.133 52.381 0.00 0.00 0.00 3.41
2818 3335 1.652947 TCAGGGAGGTGGGTTAAGAC 58.347 55.000 0.00 0.00 0.00 3.01
2819 3336 2.196595 CATCAGGGAGGTGGGTTAAGA 58.803 52.381 0.00 0.00 0.00 2.10
2820 3337 2.171448 CTCATCAGGGAGGTGGGTTAAG 59.829 54.545 0.00 0.00 0.00 1.85
2821 3338 2.196595 CTCATCAGGGAGGTGGGTTAA 58.803 52.381 0.00 0.00 0.00 2.01
2822 3339 1.879575 CTCATCAGGGAGGTGGGTTA 58.120 55.000 0.00 0.00 0.00 2.85
2823 3340 1.566298 GCTCATCAGGGAGGTGGGTT 61.566 60.000 0.00 0.00 35.41 4.11
2824 3341 1.997874 GCTCATCAGGGAGGTGGGT 60.998 63.158 0.00 0.00 35.41 4.51
2825 3342 1.692042 AGCTCATCAGGGAGGTGGG 60.692 63.158 0.00 0.00 43.51 4.61
2826 3343 4.063335 AGCTCATCAGGGAGGTGG 57.937 61.111 0.00 0.00 43.51 4.61
2828 3345 0.913451 AAGCAGCTCATCAGGGAGGT 60.913 55.000 0.00 0.00 45.89 3.85
2829 3346 0.179051 GAAGCAGCTCATCAGGGAGG 60.179 60.000 0.00 0.00 35.41 4.30
2830 3347 0.831966 AGAAGCAGCTCATCAGGGAG 59.168 55.000 0.00 0.00 37.97 4.30
2831 3348 1.065636 CAAGAAGCAGCTCATCAGGGA 60.066 52.381 0.00 0.00 0.00 4.20
2832 3349 1.380524 CAAGAAGCAGCTCATCAGGG 58.619 55.000 0.00 0.00 0.00 4.45
2833 3350 1.339824 ACCAAGAAGCAGCTCATCAGG 60.340 52.381 0.00 0.00 0.00 3.86
2834 3351 2.008329 GACCAAGAAGCAGCTCATCAG 58.992 52.381 0.00 0.00 0.00 2.90
2835 3352 1.627329 AGACCAAGAAGCAGCTCATCA 59.373 47.619 0.00 0.00 0.00 3.07
2889 3406 4.437682 AAGAACAGATTTGTCAGGTGGA 57.562 40.909 0.00 0.00 36.23 4.02
3064 3581 5.581085 CCACTCGAGTCCTAAATGTTTTAGG 59.419 44.000 16.96 16.54 42.21 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.