Multiple sequence alignment - TraesCS7B01G177200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G177200 chr7B 100.000 1704 0 0 540 2243 253264808 253263105 0.000000e+00 3147
1 TraesCS7B01G177200 chr7B 89.546 727 47 10 838 1536 663107679 663108404 0.000000e+00 894
2 TraesCS7B01G177200 chr7B 100.000 331 0 0 1 331 253265347 253265017 1.470000e-171 612
3 TraesCS7B01G177200 chr4B 95.687 1484 61 3 760 2243 141079988 141081468 0.000000e+00 2383
4 TraesCS7B01G177200 chr4B 94.663 356 17 2 1890 2243 621660522 621660877 3.260000e-153 551
5 TraesCS7B01G177200 chr2B 92.796 1513 103 4 733 2243 311334409 311335917 0.000000e+00 2185
6 TraesCS7B01G177200 chr2B 92.000 100 8 0 707 806 220962512 220962611 8.350000e-30 141
7 TraesCS7B01G177200 chr7D 92.642 965 65 4 707 1668 195395503 195396464 0.000000e+00 1384
8 TraesCS7B01G177200 chr7D 92.780 928 60 5 744 1668 354527321 354528244 0.000000e+00 1336
9 TraesCS7B01G177200 chr7D 91.892 777 49 2 765 1541 346185045 346184283 0.000000e+00 1074
10 TraesCS7B01G177200 chr7D 88.843 726 52 16 831 1536 588678995 588678279 0.000000e+00 865
11 TraesCS7B01G177200 chr7D 94.991 539 22 4 1708 2243 195396464 195397000 0.000000e+00 841
12 TraesCS7B01G177200 chr7D 94.333 547 24 6 1702 2243 346184183 346183639 0.000000e+00 832
13 TraesCS7B01G177200 chr7D 93.419 547 26 8 1702 2243 354528246 354528787 0.000000e+00 802
14 TraesCS7B01G177200 chr7D 86.260 131 9 3 1415 1536 588841162 588841292 1.400000e-27 134
15 TraesCS7B01G177200 chr7A 85.992 721 55 19 851 1536 680406665 680407374 0.000000e+00 730
16 TraesCS7B01G177200 chr7A 88.162 321 32 4 1543 1859 238546879 238547197 5.850000e-101 377
17 TraesCS7B01G177200 chr7A 85.075 201 23 1 1 194 321652675 321652475 4.890000e-47 198
18 TraesCS7B01G177200 chr3B 94.944 356 16 2 1890 2243 658959599 658959954 7.000000e-155 556
19 TraesCS7B01G177200 chr3B 94.398 357 16 4 1890 2243 383919956 383920311 1.510000e-151 545
20 TraesCS7B01G177200 chr1B 94.944 356 16 2 1890 2243 30060643 30060998 7.000000e-155 556
21 TraesCS7B01G177200 chr1B 88.235 323 32 3 1541 1857 280435876 280436198 4.520000e-102 381
22 TraesCS7B01G177200 chr1B 85.670 321 40 4 1543 1857 560819285 560819605 1.280000e-87 333
23 TraesCS7B01G177200 chr1B 94.059 101 6 0 707 807 252912159 252912259 1.070000e-33 154
24 TraesCS7B01G177200 chr1B 92.222 90 7 0 707 796 349042988 349043077 6.500000e-26 128
25 TraesCS7B01G177200 chr5B 88.643 361 28 7 1544 1893 308024175 308023817 5.720000e-116 427
26 TraesCS7B01G177200 chr5B 87.963 324 32 4 1541 1857 570010439 570010762 2.100000e-100 375
27 TraesCS7B01G177200 chr2D 88.146 329 29 7 1541 1862 3575726 3575401 1.260000e-102 383
28 TraesCS7B01G177200 chr2A 84.385 301 39 6 1544 1838 412388805 412389103 2.820000e-74 289
29 TraesCS7B01G177200 chr2A 93.814 97 6 0 707 803 235806404 235806500 1.800000e-31 147
30 TraesCS7B01G177200 chr6D 85.470 234 22 4 2 223 91391282 91391515 1.340000e-57 233
31 TraesCS7B01G177200 chr4D 92.308 91 7 0 707 797 384432321 384432411 1.810000e-26 130
32 TraesCS7B01G177200 chr1A 90.722 97 7 1 707 803 273196522 273196428 6.500000e-26 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G177200 chr7B 253263105 253265347 2242 True 1879.5 3147 100.0000 1 2243 2 chr7B.!!$R1 2242
1 TraesCS7B01G177200 chr7B 663107679 663108404 725 False 894.0 894 89.5460 838 1536 1 chr7B.!!$F1 698
2 TraesCS7B01G177200 chr4B 141079988 141081468 1480 False 2383.0 2383 95.6870 760 2243 1 chr4B.!!$F1 1483
3 TraesCS7B01G177200 chr2B 311334409 311335917 1508 False 2185.0 2185 92.7960 733 2243 1 chr2B.!!$F2 1510
4 TraesCS7B01G177200 chr7D 195395503 195397000 1497 False 1112.5 1384 93.8165 707 2243 2 chr7D.!!$F2 1536
5 TraesCS7B01G177200 chr7D 354527321 354528787 1466 False 1069.0 1336 93.0995 744 2243 2 chr7D.!!$F3 1499
6 TraesCS7B01G177200 chr7D 346183639 346185045 1406 True 953.0 1074 93.1125 765 2243 2 chr7D.!!$R2 1478
7 TraesCS7B01G177200 chr7D 588678279 588678995 716 True 865.0 865 88.8430 831 1536 1 chr7D.!!$R1 705
8 TraesCS7B01G177200 chr7A 680406665 680407374 709 False 730.0 730 85.9920 851 1536 1 chr7A.!!$F2 685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 318 0.044244 TAGAGGGGAAGAAGGTGGGG 59.956 60.0 0.0 0.0 0.0 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1396 1441 0.035152 AATCAAGATCTGCGGGCACA 60.035 50.0 0.0 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.082523 ACGGGGAGGTGTGCATCG 62.083 66.667 0.00 0.00 0.00 3.84
18 19 3.770040 CGGGGAGGTGTGCATCGA 61.770 66.667 0.00 0.00 0.00 3.59
19 20 2.187946 GGGGAGGTGTGCATCGAG 59.812 66.667 0.00 0.00 0.00 4.04
20 21 2.359169 GGGGAGGTGTGCATCGAGA 61.359 63.158 0.00 0.00 0.00 4.04
21 22 1.690219 GGGGAGGTGTGCATCGAGAT 61.690 60.000 0.00 0.00 0.00 2.75
22 23 0.531532 GGGAGGTGTGCATCGAGATG 60.532 60.000 8.62 8.62 41.60 2.90
23 24 0.461548 GGAGGTGTGCATCGAGATGA 59.538 55.000 16.45 0.04 41.20 2.92
24 25 1.537776 GGAGGTGTGCATCGAGATGAG 60.538 57.143 16.45 0.00 41.20 2.90
25 26 1.406898 GAGGTGTGCATCGAGATGAGA 59.593 52.381 16.45 0.00 41.20 3.27
26 27 1.408340 AGGTGTGCATCGAGATGAGAG 59.592 52.381 16.45 0.00 41.20 3.20
27 28 1.537776 GGTGTGCATCGAGATGAGAGG 60.538 57.143 16.45 0.00 41.20 3.69
28 29 1.406898 GTGTGCATCGAGATGAGAGGA 59.593 52.381 16.45 0.00 41.20 3.71
29 30 2.035704 GTGTGCATCGAGATGAGAGGAT 59.964 50.000 16.45 0.00 41.20 3.24
30 31 2.035576 TGTGCATCGAGATGAGAGGATG 59.964 50.000 16.45 0.00 41.20 3.51
31 32 1.617357 TGCATCGAGATGAGAGGATGG 59.383 52.381 16.45 0.00 41.20 3.51
32 33 1.067000 GCATCGAGATGAGAGGATGGG 60.067 57.143 16.45 0.00 41.20 4.00
33 34 1.549620 CATCGAGATGAGAGGATGGGG 59.450 57.143 7.26 0.00 41.20 4.96
34 35 0.178950 TCGAGATGAGAGGATGGGGG 60.179 60.000 0.00 0.00 0.00 5.40
35 36 0.178950 CGAGATGAGAGGATGGGGGA 60.179 60.000 0.00 0.00 0.00 4.81
36 37 1.759201 CGAGATGAGAGGATGGGGGAA 60.759 57.143 0.00 0.00 0.00 3.97
37 38 1.977129 GAGATGAGAGGATGGGGGAAG 59.023 57.143 0.00 0.00 0.00 3.46
38 39 1.063183 GATGAGAGGATGGGGGAAGG 58.937 60.000 0.00 0.00 0.00 3.46
39 40 0.402566 ATGAGAGGATGGGGGAAGGG 60.403 60.000 0.00 0.00 0.00 3.95
40 41 1.318380 GAGAGGATGGGGGAAGGGA 59.682 63.158 0.00 0.00 0.00 4.20
41 42 0.327576 GAGAGGATGGGGGAAGGGAA 60.328 60.000 0.00 0.00 0.00 3.97
42 43 0.123266 AGAGGATGGGGGAAGGGAAA 59.877 55.000 0.00 0.00 0.00 3.13
43 44 0.259065 GAGGATGGGGGAAGGGAAAC 59.741 60.000 0.00 0.00 0.00 2.78
44 45 1.076995 GGATGGGGGAAGGGAAACG 60.077 63.158 0.00 0.00 0.00 3.60
45 46 1.076995 GATGGGGGAAGGGAAACGG 60.077 63.158 0.00 0.00 0.00 4.44
46 47 1.542881 ATGGGGGAAGGGAAACGGA 60.543 57.895 0.00 0.00 0.00 4.69
47 48 1.571773 ATGGGGGAAGGGAAACGGAG 61.572 60.000 0.00 0.00 0.00 4.63
72 73 4.760047 CCACGAGGTTGAGGCCCG 62.760 72.222 0.00 0.00 0.00 6.13
73 74 3.691342 CACGAGGTTGAGGCCCGA 61.691 66.667 0.00 0.00 0.00 5.14
74 75 3.692406 ACGAGGTTGAGGCCCGAC 61.692 66.667 0.00 0.42 0.00 4.79
87 88 2.907917 CCGACCTAGGGGCGAGAG 60.908 72.222 23.02 7.12 35.33 3.20
88 89 2.907917 CGACCTAGGGGCGAGAGG 60.908 72.222 18.26 0.00 35.33 3.69
89 90 2.601868 GACCTAGGGGCGAGAGGA 59.398 66.667 14.81 0.00 35.63 3.71
90 91 1.076192 GACCTAGGGGCGAGAGGAA 60.076 63.158 14.81 0.00 35.63 3.36
91 92 1.075896 ACCTAGGGGCGAGAGGAAG 60.076 63.158 14.81 0.00 35.63 3.46
92 93 1.834822 CCTAGGGGCGAGAGGAAGG 60.835 68.421 0.00 0.00 31.45 3.46
93 94 1.075896 CTAGGGGCGAGAGGAAGGT 60.076 63.158 0.00 0.00 0.00 3.50
94 95 1.381327 TAGGGGCGAGAGGAAGGTG 60.381 63.158 0.00 0.00 0.00 4.00
95 96 2.873557 TAGGGGCGAGAGGAAGGTGG 62.874 65.000 0.00 0.00 0.00 4.61
96 97 4.475135 GGGCGAGAGGAAGGTGGC 62.475 72.222 0.00 0.00 0.00 5.01
97 98 3.394836 GGCGAGAGGAAGGTGGCT 61.395 66.667 0.00 0.00 0.00 4.75
98 99 2.058595 GGCGAGAGGAAGGTGGCTA 61.059 63.158 0.00 0.00 0.00 3.93
99 100 1.439644 GCGAGAGGAAGGTGGCTAG 59.560 63.158 0.00 0.00 0.00 3.42
100 101 2.022240 GCGAGAGGAAGGTGGCTAGG 62.022 65.000 0.00 0.00 0.00 3.02
101 102 1.395826 CGAGAGGAAGGTGGCTAGGG 61.396 65.000 0.00 0.00 0.00 3.53
102 103 1.690985 AGAGGAAGGTGGCTAGGGC 60.691 63.158 0.00 0.00 37.82 5.19
103 104 3.083997 AGGAAGGTGGCTAGGGCG 61.084 66.667 0.00 0.00 39.81 6.13
104 105 4.176752 GGAAGGTGGCTAGGGCGG 62.177 72.222 0.00 0.00 39.81 6.13
105 106 4.858680 GAAGGTGGCTAGGGCGGC 62.859 72.222 0.00 0.00 39.81 6.53
120 121 4.554036 GGCAGGGCTGGATCCGTC 62.554 72.222 7.39 3.35 0.00 4.79
121 122 4.899239 GCAGGGCTGGATCCGTCG 62.899 72.222 7.39 0.00 0.00 5.12
122 123 4.899239 CAGGGCTGGATCCGTCGC 62.899 72.222 7.39 9.51 0.00 5.19
124 125 4.467084 GGGCTGGATCCGTCGCAA 62.467 66.667 18.48 0.00 0.00 4.85
125 126 2.892425 GGCTGGATCCGTCGCAAG 60.892 66.667 18.48 6.51 0.00 4.01
126 127 2.892425 GCTGGATCCGTCGCAAGG 60.892 66.667 7.39 0.00 38.47 3.61
127 128 2.202932 CTGGATCCGTCGCAAGGG 60.203 66.667 7.39 0.00 38.47 3.95
128 129 2.682136 TGGATCCGTCGCAAGGGA 60.682 61.111 7.39 0.00 43.32 4.20
129 130 2.107141 GGATCCGTCGCAAGGGAG 59.893 66.667 0.00 0.00 42.48 4.30
130 131 2.107141 GATCCGTCGCAAGGGAGG 59.893 66.667 0.00 0.50 42.48 4.30
131 132 4.162690 ATCCGTCGCAAGGGAGGC 62.163 66.667 0.00 0.00 42.48 4.70
169 170 4.899239 GCATCGGGGCGACAGAGG 62.899 72.222 0.00 0.00 39.18 3.69
170 171 4.227134 CATCGGGGCGACAGAGGG 62.227 72.222 0.00 0.00 39.18 4.30
171 172 4.458829 ATCGGGGCGACAGAGGGA 62.459 66.667 0.00 0.00 39.18 4.20
175 176 3.775654 GGGCGACAGAGGGAGGTG 61.776 72.222 0.00 0.00 0.00 4.00
176 177 3.775654 GGCGACAGAGGGAGGTGG 61.776 72.222 0.00 0.00 0.00 4.61
177 178 3.775654 GCGACAGAGGGAGGTGGG 61.776 72.222 0.00 0.00 0.00 4.61
178 179 2.037367 CGACAGAGGGAGGTGGGA 59.963 66.667 0.00 0.00 0.00 4.37
179 180 2.055042 CGACAGAGGGAGGTGGGAG 61.055 68.421 0.00 0.00 0.00 4.30
180 181 1.687493 GACAGAGGGAGGTGGGAGG 60.687 68.421 0.00 0.00 0.00 4.30
181 182 2.169590 GACAGAGGGAGGTGGGAGGA 62.170 65.000 0.00 0.00 0.00 3.71
182 183 1.382420 CAGAGGGAGGTGGGAGGAG 60.382 68.421 0.00 0.00 0.00 3.69
183 184 2.041405 GAGGGAGGTGGGAGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
184 185 4.423209 AGGGAGGTGGGAGGAGGC 62.423 72.222 0.00 0.00 0.00 4.70
208 209 4.083862 GGCGGGGTGGTGAGAGAC 62.084 72.222 0.00 0.00 0.00 3.36
209 210 3.311110 GCGGGGTGGTGAGAGACA 61.311 66.667 0.00 0.00 0.00 3.41
210 211 2.973899 CGGGGTGGTGAGAGACAG 59.026 66.667 0.00 0.00 0.00 3.51
211 212 2.650116 CGGGGTGGTGAGAGACAGG 61.650 68.421 0.00 0.00 0.00 4.00
212 213 2.294078 GGGGTGGTGAGAGACAGGG 61.294 68.421 0.00 0.00 0.00 4.45
213 214 2.294078 GGGTGGTGAGAGACAGGGG 61.294 68.421 0.00 0.00 0.00 4.79
214 215 1.229209 GGTGGTGAGAGACAGGGGA 60.229 63.158 0.00 0.00 0.00 4.81
215 216 0.836400 GGTGGTGAGAGACAGGGGAA 60.836 60.000 0.00 0.00 0.00 3.97
216 217 0.610687 GTGGTGAGAGACAGGGGAAG 59.389 60.000 0.00 0.00 0.00 3.46
217 218 0.487325 TGGTGAGAGACAGGGGAAGA 59.513 55.000 0.00 0.00 0.00 2.87
218 219 0.899019 GGTGAGAGACAGGGGAAGAC 59.101 60.000 0.00 0.00 0.00 3.01
219 220 1.633774 GTGAGAGACAGGGGAAGACA 58.366 55.000 0.00 0.00 0.00 3.41
220 221 1.548269 GTGAGAGACAGGGGAAGACAG 59.452 57.143 0.00 0.00 0.00 3.51
221 222 0.534873 GAGAGACAGGGGAAGACAGC 59.465 60.000 0.00 0.00 0.00 4.40
222 223 1.216710 GAGACAGGGGAAGACAGCG 59.783 63.158 0.00 0.00 0.00 5.18
223 224 2.232298 GAGACAGGGGAAGACAGCGG 62.232 65.000 0.00 0.00 0.00 5.52
224 225 3.959991 GACAGGGGAAGACAGCGGC 62.960 68.421 0.00 0.00 0.00 6.53
225 226 4.020617 CAGGGGAAGACAGCGGCA 62.021 66.667 1.45 0.00 0.00 5.69
226 227 3.249189 AGGGGAAGACAGCGGCAA 61.249 61.111 1.45 0.00 0.00 4.52
227 228 3.056328 GGGGAAGACAGCGGCAAC 61.056 66.667 1.45 0.00 0.00 4.17
228 229 3.056328 GGGAAGACAGCGGCAACC 61.056 66.667 1.45 0.00 0.00 3.77
229 230 3.056328 GGAAGACAGCGGCAACCC 61.056 66.667 1.45 0.00 0.00 4.11
239 240 4.355151 GGCAACCCGGATTTGGAT 57.645 55.556 0.73 0.00 0.00 3.41
240 241 1.815866 GGCAACCCGGATTTGGATG 59.184 57.895 0.73 0.00 0.00 3.51
241 242 0.970427 GGCAACCCGGATTTGGATGT 60.970 55.000 0.73 0.00 0.00 3.06
242 243 0.173255 GCAACCCGGATTTGGATGTG 59.827 55.000 0.73 0.00 0.00 3.21
243 244 0.817013 CAACCCGGATTTGGATGTGG 59.183 55.000 0.73 0.00 0.00 4.17
244 245 0.701731 AACCCGGATTTGGATGTGGA 59.298 50.000 0.73 0.00 0.00 4.02
245 246 0.926293 ACCCGGATTTGGATGTGGAT 59.074 50.000 0.73 0.00 0.00 3.41
246 247 1.321474 CCCGGATTTGGATGTGGATG 58.679 55.000 0.73 0.00 0.00 3.51
247 248 1.410083 CCCGGATTTGGATGTGGATGT 60.410 52.381 0.73 0.00 0.00 3.06
248 249 1.677576 CCGGATTTGGATGTGGATGTG 59.322 52.381 0.00 0.00 0.00 3.21
249 250 1.677576 CGGATTTGGATGTGGATGTGG 59.322 52.381 0.00 0.00 0.00 4.17
250 251 2.683447 CGGATTTGGATGTGGATGTGGA 60.683 50.000 0.00 0.00 0.00 4.02
251 252 2.954318 GGATTTGGATGTGGATGTGGAG 59.046 50.000 0.00 0.00 0.00 3.86
252 253 2.512692 TTTGGATGTGGATGTGGAGG 57.487 50.000 0.00 0.00 0.00 4.30
253 254 1.371467 TTGGATGTGGATGTGGAGGT 58.629 50.000 0.00 0.00 0.00 3.85
254 255 0.620030 TGGATGTGGATGTGGAGGTG 59.380 55.000 0.00 0.00 0.00 4.00
255 256 0.107017 GGATGTGGATGTGGAGGTGG 60.107 60.000 0.00 0.00 0.00 4.61
256 257 0.620556 GATGTGGATGTGGAGGTGGT 59.379 55.000 0.00 0.00 0.00 4.16
257 258 0.329261 ATGTGGATGTGGAGGTGGTG 59.671 55.000 0.00 0.00 0.00 4.17
258 259 1.002134 GTGGATGTGGAGGTGGTGG 60.002 63.158 0.00 0.00 0.00 4.61
259 260 1.463214 TGGATGTGGAGGTGGTGGT 60.463 57.895 0.00 0.00 0.00 4.16
260 261 1.002134 GGATGTGGAGGTGGTGGTG 60.002 63.158 0.00 0.00 0.00 4.17
261 262 1.002134 GATGTGGAGGTGGTGGTGG 60.002 63.158 0.00 0.00 0.00 4.61
262 263 1.463214 ATGTGGAGGTGGTGGTGGA 60.463 57.895 0.00 0.00 0.00 4.02
263 264 0.846427 ATGTGGAGGTGGTGGTGGAT 60.846 55.000 0.00 0.00 0.00 3.41
264 265 0.178888 TGTGGAGGTGGTGGTGGATA 60.179 55.000 0.00 0.00 0.00 2.59
265 266 0.252197 GTGGAGGTGGTGGTGGATAC 59.748 60.000 0.00 0.00 0.00 2.24
276 277 2.986290 TGGATACCACAGTGCCCG 59.014 61.111 0.00 0.00 0.00 6.13
277 278 2.189521 GGATACCACAGTGCCCGG 59.810 66.667 0.00 0.00 0.00 5.73
278 279 2.666098 GGATACCACAGTGCCCGGT 61.666 63.158 0.00 4.99 36.79 5.28
279 280 1.449601 GATACCACAGTGCCCGGTG 60.450 63.158 0.00 0.00 36.64 4.94
280 281 3.622060 ATACCACAGTGCCCGGTGC 62.622 63.158 0.00 4.04 35.70 5.01
298 299 4.779486 GTGGGGGTGGGGGATCCT 62.779 72.222 12.58 0.00 36.20 3.24
299 300 2.967612 TGGGGGTGGGGGATCCTA 60.968 66.667 12.58 0.00 36.20 2.94
300 301 2.121918 GGGGGTGGGGGATCCTAG 60.122 72.222 12.58 0.00 36.20 3.02
301 302 2.733666 GGGGGTGGGGGATCCTAGA 61.734 68.421 12.58 0.00 36.20 2.43
302 303 1.152008 GGGGTGGGGGATCCTAGAG 60.152 68.421 12.58 0.00 36.20 2.43
303 304 1.152008 GGGTGGGGGATCCTAGAGG 60.152 68.421 12.58 0.00 36.20 3.69
304 305 1.152008 GGTGGGGGATCCTAGAGGG 60.152 68.421 12.58 0.00 36.20 4.30
305 306 1.152008 GTGGGGGATCCTAGAGGGG 60.152 68.421 12.58 0.00 36.20 4.79
306 307 1.311464 TGGGGGATCCTAGAGGGGA 60.311 63.158 12.58 0.00 39.95 4.81
307 308 0.939443 TGGGGGATCCTAGAGGGGAA 60.939 60.000 12.58 0.00 39.02 3.97
308 309 0.178888 GGGGGATCCTAGAGGGGAAG 60.179 65.000 12.58 0.00 39.02 3.46
309 310 0.868186 GGGGATCCTAGAGGGGAAGA 59.132 60.000 12.58 0.00 39.02 2.87
310 311 1.223337 GGGGATCCTAGAGGGGAAGAA 59.777 57.143 12.58 0.00 39.02 2.52
311 312 2.615391 GGGATCCTAGAGGGGAAGAAG 58.385 57.143 12.58 0.00 39.02 2.85
312 313 2.615391 GGATCCTAGAGGGGAAGAAGG 58.385 57.143 3.84 0.00 39.02 3.46
313 314 2.090437 GGATCCTAGAGGGGAAGAAGGT 60.090 54.545 3.84 0.00 39.02 3.50
314 315 2.552093 TCCTAGAGGGGAAGAAGGTG 57.448 55.000 0.00 0.00 35.41 4.00
315 316 1.008449 TCCTAGAGGGGAAGAAGGTGG 59.992 57.143 0.00 0.00 35.41 4.61
316 317 1.501582 CTAGAGGGGAAGAAGGTGGG 58.498 60.000 0.00 0.00 0.00 4.61
317 318 0.044244 TAGAGGGGAAGAAGGTGGGG 59.956 60.000 0.00 0.00 0.00 4.96
318 319 2.941583 AGGGGAAGAAGGTGGGGC 60.942 66.667 0.00 0.00 0.00 5.80
319 320 4.426313 GGGGAAGAAGGTGGGGCG 62.426 72.222 0.00 0.00 0.00 6.13
320 321 3.647771 GGGAAGAAGGTGGGGCGT 61.648 66.667 0.00 0.00 0.00 5.68
321 322 2.295602 GGGAAGAAGGTGGGGCGTA 61.296 63.158 0.00 0.00 0.00 4.42
322 323 1.078637 GGAAGAAGGTGGGGCGTAC 60.079 63.158 0.00 0.00 0.00 3.67
323 324 1.447314 GAAGAAGGTGGGGCGTACG 60.447 63.158 11.84 11.84 0.00 3.67
324 325 2.847435 GAAGAAGGTGGGGCGTACGG 62.847 65.000 18.39 0.00 0.00 4.02
325 326 4.462280 GAAGGTGGGGCGTACGGG 62.462 72.222 18.39 0.00 0.00 5.28
573 574 3.966543 CCCGGTGGGCAAGAAGGT 61.967 66.667 0.00 0.00 35.35 3.50
574 575 2.598787 CCCGGTGGGCAAGAAGGTA 61.599 63.158 0.00 0.00 35.35 3.08
575 576 1.078426 CCGGTGGGCAAGAAGGTAG 60.078 63.158 0.00 0.00 0.00 3.18
576 577 1.078426 CGGTGGGCAAGAAGGTAGG 60.078 63.158 0.00 0.00 0.00 3.18
577 578 1.303282 GGTGGGCAAGAAGGTAGGG 59.697 63.158 0.00 0.00 0.00 3.53
578 579 1.303282 GTGGGCAAGAAGGTAGGGG 59.697 63.158 0.00 0.00 0.00 4.79
579 580 1.162329 TGGGCAAGAAGGTAGGGGA 59.838 57.895 0.00 0.00 0.00 4.81
580 581 0.253630 TGGGCAAGAAGGTAGGGGAT 60.254 55.000 0.00 0.00 0.00 3.85
581 582 0.474614 GGGCAAGAAGGTAGGGGATC 59.525 60.000 0.00 0.00 0.00 3.36
582 583 0.106894 GGCAAGAAGGTAGGGGATCG 59.893 60.000 0.00 0.00 0.00 3.69
583 584 0.106894 GCAAGAAGGTAGGGGATCGG 59.893 60.000 0.00 0.00 0.00 4.18
584 585 0.759346 CAAGAAGGTAGGGGATCGGG 59.241 60.000 0.00 0.00 0.00 5.14
585 586 0.400093 AAGAAGGTAGGGGATCGGGG 60.400 60.000 0.00 0.00 0.00 5.73
586 587 1.842010 GAAGGTAGGGGATCGGGGG 60.842 68.421 0.00 0.00 0.00 5.40
604 605 3.670377 GCTGGGTGCGGGTGTTTC 61.670 66.667 0.00 0.00 0.00 2.78
605 606 3.353836 CTGGGTGCGGGTGTTTCG 61.354 66.667 0.00 0.00 0.00 3.46
606 607 4.939368 TGGGTGCGGGTGTTTCGG 62.939 66.667 0.00 0.00 0.00 4.30
608 609 4.629523 GGTGCGGGTGTTTCGGGA 62.630 66.667 0.00 0.00 0.00 5.14
609 610 2.592287 GTGCGGGTGTTTCGGGAA 60.592 61.111 0.00 0.00 0.00 3.97
610 611 2.281208 TGCGGGTGTTTCGGGAAG 60.281 61.111 0.00 0.00 0.00 3.46
611 612 3.053896 GCGGGTGTTTCGGGAAGG 61.054 66.667 0.00 0.00 0.00 3.46
612 613 2.745037 CGGGTGTTTCGGGAAGGA 59.255 61.111 0.00 0.00 0.00 3.36
613 614 1.071814 CGGGTGTTTCGGGAAGGAA 59.928 57.895 0.00 0.00 0.00 3.36
614 615 0.953960 CGGGTGTTTCGGGAAGGAAG 60.954 60.000 0.00 0.00 0.00 3.46
615 616 0.399075 GGGTGTTTCGGGAAGGAAGA 59.601 55.000 0.00 0.00 0.00 2.87
616 617 1.202842 GGGTGTTTCGGGAAGGAAGAA 60.203 52.381 0.00 0.00 0.00 2.52
617 618 2.152016 GGTGTTTCGGGAAGGAAGAAG 58.848 52.381 0.00 0.00 0.00 2.85
618 619 2.152016 GTGTTTCGGGAAGGAAGAAGG 58.848 52.381 0.00 0.00 0.00 3.46
619 620 1.772453 TGTTTCGGGAAGGAAGAAGGT 59.228 47.619 0.00 0.00 0.00 3.50
620 621 2.152016 GTTTCGGGAAGGAAGAAGGTG 58.848 52.381 0.00 0.00 0.00 4.00
621 622 0.690762 TTCGGGAAGGAAGAAGGTGG 59.309 55.000 0.00 0.00 0.00 4.61
622 623 1.198759 TCGGGAAGGAAGAAGGTGGG 61.199 60.000 0.00 0.00 0.00 4.61
623 624 1.691823 GGGAAGGAAGAAGGTGGGG 59.308 63.158 0.00 0.00 0.00 4.96
624 625 0.845102 GGGAAGGAAGAAGGTGGGGA 60.845 60.000 0.00 0.00 0.00 4.81
625 626 1.299939 GGAAGGAAGAAGGTGGGGAT 58.700 55.000 0.00 0.00 0.00 3.85
626 627 1.064389 GGAAGGAAGAAGGTGGGGATG 60.064 57.143 0.00 0.00 0.00 3.51
627 628 1.002857 AAGGAAGAAGGTGGGGATGG 58.997 55.000 0.00 0.00 0.00 3.51
628 629 0.921256 AGGAAGAAGGTGGGGATGGG 60.921 60.000 0.00 0.00 0.00 4.00
629 630 1.076705 GAAGAAGGTGGGGATGGGC 60.077 63.158 0.00 0.00 0.00 5.36
630 631 1.856873 AAGAAGGTGGGGATGGGCA 60.857 57.895 0.00 0.00 0.00 5.36
631 632 2.043953 GAAGGTGGGGATGGGCAC 60.044 66.667 0.00 0.00 0.00 5.01
632 633 3.995506 GAAGGTGGGGATGGGCACG 62.996 68.421 0.00 0.00 0.00 5.34
648 649 3.250734 CGGGTGGGGTGGGTGTTA 61.251 66.667 0.00 0.00 0.00 2.41
649 650 2.761160 GGGTGGGGTGGGTGTTAG 59.239 66.667 0.00 0.00 0.00 2.34
650 651 2.761160 GGTGGGGTGGGTGTTAGG 59.239 66.667 0.00 0.00 0.00 2.69
651 652 1.848895 GGTGGGGTGGGTGTTAGGA 60.849 63.158 0.00 0.00 0.00 2.94
652 653 1.683441 GTGGGGTGGGTGTTAGGAG 59.317 63.158 0.00 0.00 0.00 3.69
653 654 0.838987 GTGGGGTGGGTGTTAGGAGA 60.839 60.000 0.00 0.00 0.00 3.71
654 655 0.104356 TGGGGTGGGTGTTAGGAGAA 60.104 55.000 0.00 0.00 0.00 2.87
655 656 1.296002 GGGGTGGGTGTTAGGAGAAT 58.704 55.000 0.00 0.00 0.00 2.40
656 657 2.225934 TGGGGTGGGTGTTAGGAGAATA 60.226 50.000 0.00 0.00 0.00 1.75
657 658 2.848071 GGGGTGGGTGTTAGGAGAATAA 59.152 50.000 0.00 0.00 0.00 1.40
658 659 3.118000 GGGGTGGGTGTTAGGAGAATAAG 60.118 52.174 0.00 0.00 0.00 1.73
659 660 3.778629 GGGTGGGTGTTAGGAGAATAAGA 59.221 47.826 0.00 0.00 0.00 2.10
660 661 4.226620 GGGTGGGTGTTAGGAGAATAAGAA 59.773 45.833 0.00 0.00 0.00 2.52
661 662 5.280830 GGGTGGGTGTTAGGAGAATAAGAAA 60.281 44.000 0.00 0.00 0.00 2.52
662 663 6.424032 GGTGGGTGTTAGGAGAATAAGAAAT 58.576 40.000 0.00 0.00 0.00 2.17
663 664 7.366191 GGGTGGGTGTTAGGAGAATAAGAAATA 60.366 40.741 0.00 0.00 0.00 1.40
664 665 7.715686 GGTGGGTGTTAGGAGAATAAGAAATAG 59.284 40.741 0.00 0.00 0.00 1.73
665 666 8.265764 GTGGGTGTTAGGAGAATAAGAAATAGT 58.734 37.037 0.00 0.00 0.00 2.12
666 667 8.265055 TGGGTGTTAGGAGAATAAGAAATAGTG 58.735 37.037 0.00 0.00 0.00 2.74
667 668 8.265764 GGGTGTTAGGAGAATAAGAAATAGTGT 58.734 37.037 0.00 0.00 0.00 3.55
668 669 9.668497 GGTGTTAGGAGAATAAGAAATAGTGTT 57.332 33.333 0.00 0.00 0.00 3.32
674 675 8.982723 AGGAGAATAAGAAATAGTGTTAGCAGA 58.017 33.333 0.00 0.00 0.00 4.26
675 676 9.601217 GGAGAATAAGAAATAGTGTTAGCAGAA 57.399 33.333 0.00 0.00 0.00 3.02
682 683 8.655651 AGAAATAGTGTTAGCAGAATAAGCTC 57.344 34.615 0.00 0.00 42.32 4.09
683 684 8.482128 AGAAATAGTGTTAGCAGAATAAGCTCT 58.518 33.333 0.00 0.00 42.32 4.09
684 685 9.103861 GAAATAGTGTTAGCAGAATAAGCTCTT 57.896 33.333 0.00 0.00 42.32 2.85
687 688 9.757227 ATAGTGTTAGCAGAATAAGCTCTTAAG 57.243 33.333 0.00 0.00 42.32 1.85
688 689 7.044798 AGTGTTAGCAGAATAAGCTCTTAAGG 58.955 38.462 1.85 0.00 42.32 2.69
689 690 7.042335 GTGTTAGCAGAATAAGCTCTTAAGGA 58.958 38.462 1.85 0.00 42.32 3.36
690 691 7.223777 GTGTTAGCAGAATAAGCTCTTAAGGAG 59.776 40.741 1.85 0.38 42.32 3.69
691 692 5.948742 AGCAGAATAAGCTCTTAAGGAGT 57.051 39.130 1.85 0.00 43.62 3.85
692 693 5.669477 AGCAGAATAAGCTCTTAAGGAGTG 58.331 41.667 1.85 0.00 43.62 3.51
693 694 5.188751 AGCAGAATAAGCTCTTAAGGAGTGT 59.811 40.000 1.85 0.00 43.62 3.55
694 695 5.877564 GCAGAATAAGCTCTTAAGGAGTGTT 59.122 40.000 1.85 1.20 43.62 3.32
695 696 7.042335 GCAGAATAAGCTCTTAAGGAGTGTTA 58.958 38.462 1.85 3.07 43.62 2.41
696 697 7.713073 GCAGAATAAGCTCTTAAGGAGTGTTAT 59.287 37.037 1.85 4.88 43.62 1.89
697 698 9.606631 CAGAATAAGCTCTTAAGGAGTGTTATT 57.393 33.333 1.85 11.23 43.62 1.40
832 833 4.875713 GGGCGCCATGGATTCCGT 62.876 66.667 30.85 0.00 0.00 4.69
1091 1129 4.083862 GAAGGCGTCGGGGAGCTT 62.084 66.667 0.00 0.00 0.00 3.74
1156 1194 2.149383 TGGGTGCTCTGCTTCCTGT 61.149 57.895 0.00 0.00 0.00 4.00
1336 1381 9.351570 GATTGATCAAAGAACTGAAGATTTTCC 57.648 33.333 13.09 0.00 32.09 3.13
1337 1382 6.902341 TGATCAAAGAACTGAAGATTTTCCG 58.098 36.000 0.00 0.00 32.09 4.30
1512 1580 5.409211 GCTACAGTTCTCCTTACTACAACC 58.591 45.833 0.00 0.00 0.00 3.77
1619 1693 2.039613 GGCAGATAGCTATTTCAGGCCT 59.960 50.000 19.34 0.00 44.79 5.19
1737 1843 0.178068 GCTATTTCAGTCCCGGCAGA 59.822 55.000 0.00 0.00 0.00 4.26
1745 1854 2.764128 TCCCGGCAGACCTGATCC 60.764 66.667 0.00 0.00 0.00 3.36
1933 2046 5.098893 TGTGTTTGTGCATTGTTCAGTTAC 58.901 37.500 0.00 0.00 0.00 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.082523 CGATGCACACCTCCCCGT 62.083 66.667 0.00 0.00 0.00 5.28
1 2 3.723235 CTCGATGCACACCTCCCCG 62.723 68.421 0.00 0.00 0.00 5.73
2 3 1.690219 ATCTCGATGCACACCTCCCC 61.690 60.000 0.00 0.00 0.00 4.81
3 4 0.531532 CATCTCGATGCACACCTCCC 60.532 60.000 0.00 0.00 31.39 4.30
5 6 1.406898 TCTCATCTCGATGCACACCTC 59.593 52.381 2.05 0.00 38.65 3.85
6 7 1.408340 CTCTCATCTCGATGCACACCT 59.592 52.381 2.05 0.00 38.65 4.00
7 8 1.537776 CCTCTCATCTCGATGCACACC 60.538 57.143 2.05 0.00 38.65 4.16
8 9 1.406898 TCCTCTCATCTCGATGCACAC 59.593 52.381 2.05 0.00 38.65 3.82
9 10 1.767759 TCCTCTCATCTCGATGCACA 58.232 50.000 2.05 0.00 38.65 4.57
10 11 2.609984 CCATCCTCTCATCTCGATGCAC 60.610 54.545 2.05 0.00 38.65 4.57
11 12 1.617357 CCATCCTCTCATCTCGATGCA 59.383 52.381 2.05 0.00 38.65 3.96
12 13 1.067000 CCCATCCTCTCATCTCGATGC 60.067 57.143 2.05 0.00 38.65 3.91
13 14 1.549620 CCCCATCCTCTCATCTCGATG 59.450 57.143 0.45 0.45 40.09 3.84
14 15 1.552023 CCCCCATCCTCTCATCTCGAT 60.552 57.143 0.00 0.00 0.00 3.59
15 16 0.178950 CCCCCATCCTCTCATCTCGA 60.179 60.000 0.00 0.00 0.00 4.04
16 17 0.178950 TCCCCCATCCTCTCATCTCG 60.179 60.000 0.00 0.00 0.00 4.04
17 18 1.977129 CTTCCCCCATCCTCTCATCTC 59.023 57.143 0.00 0.00 0.00 2.75
18 19 1.415716 CCTTCCCCCATCCTCTCATCT 60.416 57.143 0.00 0.00 0.00 2.90
19 20 1.063183 CCTTCCCCCATCCTCTCATC 58.937 60.000 0.00 0.00 0.00 2.92
20 21 0.402566 CCCTTCCCCCATCCTCTCAT 60.403 60.000 0.00 0.00 0.00 2.90
21 22 1.004758 CCCTTCCCCCATCCTCTCA 59.995 63.158 0.00 0.00 0.00 3.27
22 23 0.327576 TTCCCTTCCCCCATCCTCTC 60.328 60.000 0.00 0.00 0.00 3.20
23 24 0.123266 TTTCCCTTCCCCCATCCTCT 59.877 55.000 0.00 0.00 0.00 3.69
24 25 0.259065 GTTTCCCTTCCCCCATCCTC 59.741 60.000 0.00 0.00 0.00 3.71
25 26 1.571773 CGTTTCCCTTCCCCCATCCT 61.572 60.000 0.00 0.00 0.00 3.24
26 27 1.076995 CGTTTCCCTTCCCCCATCC 60.077 63.158 0.00 0.00 0.00 3.51
27 28 1.076995 CCGTTTCCCTTCCCCCATC 60.077 63.158 0.00 0.00 0.00 3.51
28 29 1.542881 TCCGTTTCCCTTCCCCCAT 60.543 57.895 0.00 0.00 0.00 4.00
29 30 2.121872 TCCGTTTCCCTTCCCCCA 60.122 61.111 0.00 0.00 0.00 4.96
30 31 1.786407 AACTCCGTTTCCCTTCCCCC 61.786 60.000 0.00 0.00 0.00 5.40
31 32 0.608308 CAACTCCGTTTCCCTTCCCC 60.608 60.000 0.00 0.00 0.00 4.81
32 33 0.608308 CCAACTCCGTTTCCCTTCCC 60.608 60.000 0.00 0.00 0.00 3.97
33 34 0.608308 CCCAACTCCGTTTCCCTTCC 60.608 60.000 0.00 0.00 0.00 3.46
34 35 1.241990 GCCCAACTCCGTTTCCCTTC 61.242 60.000 0.00 0.00 0.00 3.46
35 36 1.228459 GCCCAACTCCGTTTCCCTT 60.228 57.895 0.00 0.00 0.00 3.95
36 37 2.434774 GCCCAACTCCGTTTCCCT 59.565 61.111 0.00 0.00 0.00 4.20
37 38 2.114411 TGCCCAACTCCGTTTCCC 59.886 61.111 0.00 0.00 0.00 3.97
38 39 2.265904 GGTGCCCAACTCCGTTTCC 61.266 63.158 0.00 0.00 0.00 3.13
39 40 1.527380 TGGTGCCCAACTCCGTTTC 60.527 57.895 0.00 0.00 34.45 2.78
40 41 1.826487 GTGGTGCCCAACTCCGTTT 60.826 57.895 0.00 0.00 34.18 3.60
41 42 2.203294 GTGGTGCCCAACTCCGTT 60.203 61.111 0.00 0.00 34.18 4.44
42 43 4.619227 CGTGGTGCCCAACTCCGT 62.619 66.667 0.00 0.00 34.18 4.69
43 44 4.308458 TCGTGGTGCCCAACTCCG 62.308 66.667 0.00 0.00 34.18 4.63
44 45 2.358737 CTCGTGGTGCCCAACTCC 60.359 66.667 0.00 0.00 34.18 3.85
45 46 2.358737 CCTCGTGGTGCCCAACTC 60.359 66.667 0.00 0.00 34.18 3.01
46 47 3.168528 ACCTCGTGGTGCCCAACT 61.169 61.111 8.68 0.00 46.51 3.16
55 56 4.760047 CGGGCCTCAACCTCGTGG 62.760 72.222 0.84 0.99 39.83 4.94
56 57 3.691342 TCGGGCCTCAACCTCGTG 61.691 66.667 0.84 0.00 0.00 4.35
57 58 3.692406 GTCGGGCCTCAACCTCGT 61.692 66.667 0.84 0.00 0.00 4.18
58 59 4.452733 GGTCGGGCCTCAACCTCG 62.453 72.222 0.84 0.00 0.00 4.63
59 60 1.677637 CTAGGTCGGGCCTCAACCTC 61.678 65.000 22.26 0.00 46.96 3.85
60 61 1.686110 CTAGGTCGGGCCTCAACCT 60.686 63.158 22.25 22.25 46.96 3.50
61 62 2.732619 CCTAGGTCGGGCCTCAACC 61.733 68.421 3.37 8.22 46.96 3.77
62 63 2.732619 CCCTAGGTCGGGCCTCAAC 61.733 68.421 3.37 0.00 46.96 3.18
63 64 2.365105 CCCTAGGTCGGGCCTCAA 60.365 66.667 3.37 0.00 46.96 3.02
64 65 4.475444 CCCCTAGGTCGGGCCTCA 62.475 72.222 3.37 0.00 46.96 3.86
69 70 4.517934 TCTCGCCCCTAGGTCGGG 62.518 72.222 17.28 15.15 44.20 5.14
70 71 2.907917 CTCTCGCCCCTAGGTCGG 60.908 72.222 17.28 9.74 34.63 4.79
71 72 2.905935 TTCCTCTCGCCCCTAGGTCG 62.906 65.000 8.29 11.00 35.01 4.79
72 73 1.076192 TTCCTCTCGCCCCTAGGTC 60.076 63.158 8.29 0.00 34.57 3.85
73 74 1.075896 CTTCCTCTCGCCCCTAGGT 60.076 63.158 8.29 0.00 34.57 3.08
74 75 1.834822 CCTTCCTCTCGCCCCTAGG 60.835 68.421 0.06 0.06 0.00 3.02
75 76 1.075896 ACCTTCCTCTCGCCCCTAG 60.076 63.158 0.00 0.00 0.00 3.02
76 77 1.381327 CACCTTCCTCTCGCCCCTA 60.381 63.158 0.00 0.00 0.00 3.53
77 78 2.685380 CACCTTCCTCTCGCCCCT 60.685 66.667 0.00 0.00 0.00 4.79
78 79 3.787001 CCACCTTCCTCTCGCCCC 61.787 72.222 0.00 0.00 0.00 5.80
79 80 4.475135 GCCACCTTCCTCTCGCCC 62.475 72.222 0.00 0.00 0.00 6.13
80 81 2.022240 CTAGCCACCTTCCTCTCGCC 62.022 65.000 0.00 0.00 0.00 5.54
81 82 1.439644 CTAGCCACCTTCCTCTCGC 59.560 63.158 0.00 0.00 0.00 5.03
82 83 1.395826 CCCTAGCCACCTTCCTCTCG 61.396 65.000 0.00 0.00 0.00 4.04
83 84 1.691195 GCCCTAGCCACCTTCCTCTC 61.691 65.000 0.00 0.00 0.00 3.20
84 85 1.690985 GCCCTAGCCACCTTCCTCT 60.691 63.158 0.00 0.00 0.00 3.69
85 86 2.911928 GCCCTAGCCACCTTCCTC 59.088 66.667 0.00 0.00 0.00 3.71
86 87 3.083997 CGCCCTAGCCACCTTCCT 61.084 66.667 0.00 0.00 34.57 3.36
87 88 4.176752 CCGCCCTAGCCACCTTCC 62.177 72.222 0.00 0.00 34.57 3.46
88 89 4.858680 GCCGCCCTAGCCACCTTC 62.859 72.222 0.00 0.00 34.57 3.46
103 104 4.554036 GACGGATCCAGCCCTGCC 62.554 72.222 13.41 0.00 0.00 4.85
104 105 4.899239 CGACGGATCCAGCCCTGC 62.899 72.222 13.41 0.00 0.00 4.85
105 106 4.899239 GCGACGGATCCAGCCCTG 62.899 72.222 13.41 0.00 0.00 4.45
107 108 4.467084 TTGCGACGGATCCAGCCC 62.467 66.667 13.41 0.00 0.00 5.19
108 109 2.892425 CTTGCGACGGATCCAGCC 60.892 66.667 13.41 0.00 0.00 4.85
109 110 2.892425 CCTTGCGACGGATCCAGC 60.892 66.667 13.41 14.20 0.00 4.85
110 111 2.202932 CCCTTGCGACGGATCCAG 60.203 66.667 13.41 7.30 0.00 3.86
111 112 2.682136 TCCCTTGCGACGGATCCA 60.682 61.111 13.41 0.00 0.00 3.41
112 113 2.107141 CTCCCTTGCGACGGATCC 59.893 66.667 0.00 0.00 0.00 3.36
113 114 2.107141 CCTCCCTTGCGACGGATC 59.893 66.667 0.00 0.00 0.00 3.36
114 115 4.162690 GCCTCCCTTGCGACGGAT 62.163 66.667 0.00 0.00 0.00 4.18
152 153 4.899239 CCTCTGTCGCCCCGATGC 62.899 72.222 0.00 0.00 38.42 3.91
153 154 4.227134 CCCTCTGTCGCCCCGATG 62.227 72.222 0.00 0.00 38.42 3.84
154 155 4.458829 TCCCTCTGTCGCCCCGAT 62.459 66.667 0.00 0.00 38.42 4.18
158 159 3.775654 CACCTCCCTCTGTCGCCC 61.776 72.222 0.00 0.00 0.00 6.13
159 160 3.775654 CCACCTCCCTCTGTCGCC 61.776 72.222 0.00 0.00 0.00 5.54
160 161 3.775654 CCCACCTCCCTCTGTCGC 61.776 72.222 0.00 0.00 0.00 5.19
161 162 2.037367 TCCCACCTCCCTCTGTCG 59.963 66.667 0.00 0.00 0.00 4.35
162 163 1.687493 CCTCCCACCTCCCTCTGTC 60.687 68.421 0.00 0.00 0.00 3.51
163 164 2.174876 CTCCTCCCACCTCCCTCTGT 62.175 65.000 0.00 0.00 0.00 3.41
164 165 1.382420 CTCCTCCCACCTCCCTCTG 60.382 68.421 0.00 0.00 0.00 3.35
165 166 2.641746 CCTCCTCCCACCTCCCTCT 61.642 68.421 0.00 0.00 0.00 3.69
166 167 2.041405 CCTCCTCCCACCTCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
167 168 4.423209 GCCTCCTCCCACCTCCCT 62.423 72.222 0.00 0.00 0.00 4.20
191 192 4.083862 GTCTCTCACCACCCCGCC 62.084 72.222 0.00 0.00 0.00 6.13
192 193 3.302347 CTGTCTCTCACCACCCCGC 62.302 68.421 0.00 0.00 0.00 6.13
193 194 2.650116 CCTGTCTCTCACCACCCCG 61.650 68.421 0.00 0.00 0.00 5.73
194 195 2.294078 CCCTGTCTCTCACCACCCC 61.294 68.421 0.00 0.00 0.00 4.95
195 196 2.294078 CCCCTGTCTCTCACCACCC 61.294 68.421 0.00 0.00 0.00 4.61
196 197 0.836400 TTCCCCTGTCTCTCACCACC 60.836 60.000 0.00 0.00 0.00 4.61
197 198 0.610687 CTTCCCCTGTCTCTCACCAC 59.389 60.000 0.00 0.00 0.00 4.16
198 199 0.487325 TCTTCCCCTGTCTCTCACCA 59.513 55.000 0.00 0.00 0.00 4.17
199 200 0.899019 GTCTTCCCCTGTCTCTCACC 59.101 60.000 0.00 0.00 0.00 4.02
200 201 1.548269 CTGTCTTCCCCTGTCTCTCAC 59.452 57.143 0.00 0.00 0.00 3.51
201 202 1.930251 CTGTCTTCCCCTGTCTCTCA 58.070 55.000 0.00 0.00 0.00 3.27
202 203 0.534873 GCTGTCTTCCCCTGTCTCTC 59.465 60.000 0.00 0.00 0.00 3.20
203 204 1.254284 CGCTGTCTTCCCCTGTCTCT 61.254 60.000 0.00 0.00 0.00 3.10
204 205 1.216710 CGCTGTCTTCCCCTGTCTC 59.783 63.158 0.00 0.00 0.00 3.36
205 206 2.286523 CCGCTGTCTTCCCCTGTCT 61.287 63.158 0.00 0.00 0.00 3.41
206 207 2.266055 CCGCTGTCTTCCCCTGTC 59.734 66.667 0.00 0.00 0.00 3.51
207 208 4.021925 GCCGCTGTCTTCCCCTGT 62.022 66.667 0.00 0.00 0.00 4.00
208 209 3.551496 TTGCCGCTGTCTTCCCCTG 62.551 63.158 0.00 0.00 0.00 4.45
209 210 3.249189 TTGCCGCTGTCTTCCCCT 61.249 61.111 0.00 0.00 0.00 4.79
210 211 3.056328 GTTGCCGCTGTCTTCCCC 61.056 66.667 0.00 0.00 0.00 4.81
211 212 3.056328 GGTTGCCGCTGTCTTCCC 61.056 66.667 0.00 0.00 0.00 3.97
212 213 3.056328 GGGTTGCCGCTGTCTTCC 61.056 66.667 0.00 0.00 0.00 3.46
213 214 3.423154 CGGGTTGCCGCTGTCTTC 61.423 66.667 0.00 0.00 0.00 2.87
216 217 4.778143 ATCCGGGTTGCCGCTGTC 62.778 66.667 0.00 0.00 0.00 3.51
217 218 3.860930 AAATCCGGGTTGCCGCTGT 62.861 57.895 0.00 0.00 0.00 4.40
218 219 3.061848 AAATCCGGGTTGCCGCTG 61.062 61.111 0.00 0.00 0.00 5.18
219 220 3.061848 CAAATCCGGGTTGCCGCT 61.062 61.111 0.00 0.00 0.00 5.52
220 221 4.128388 CCAAATCCGGGTTGCCGC 62.128 66.667 0.00 0.00 0.00 6.53
221 222 1.752694 ATCCAAATCCGGGTTGCCG 60.753 57.895 0.00 0.00 0.00 5.69
222 223 0.970427 ACATCCAAATCCGGGTTGCC 60.970 55.000 0.00 0.00 0.00 4.52
223 224 0.173255 CACATCCAAATCCGGGTTGC 59.827 55.000 0.00 0.00 0.00 4.17
224 225 0.817013 CCACATCCAAATCCGGGTTG 59.183 55.000 0.00 6.25 0.00 3.77
225 226 0.701731 TCCACATCCAAATCCGGGTT 59.298 50.000 0.00 0.00 0.00 4.11
226 227 0.926293 ATCCACATCCAAATCCGGGT 59.074 50.000 0.00 0.00 0.00 5.28
227 228 1.321474 CATCCACATCCAAATCCGGG 58.679 55.000 0.00 0.00 0.00 5.73
228 229 1.677576 CACATCCACATCCAAATCCGG 59.322 52.381 0.00 0.00 0.00 5.14
229 230 1.677576 CCACATCCACATCCAAATCCG 59.322 52.381 0.00 0.00 0.00 4.18
230 231 2.954318 CTCCACATCCACATCCAAATCC 59.046 50.000 0.00 0.00 0.00 3.01
231 232 2.954318 CCTCCACATCCACATCCAAATC 59.046 50.000 0.00 0.00 0.00 2.17
232 233 2.312741 ACCTCCACATCCACATCCAAAT 59.687 45.455 0.00 0.00 0.00 2.32
233 234 1.710244 ACCTCCACATCCACATCCAAA 59.290 47.619 0.00 0.00 0.00 3.28
234 235 1.004628 CACCTCCACATCCACATCCAA 59.995 52.381 0.00 0.00 0.00 3.53
235 236 0.620030 CACCTCCACATCCACATCCA 59.380 55.000 0.00 0.00 0.00 3.41
236 237 0.107017 CCACCTCCACATCCACATCC 60.107 60.000 0.00 0.00 0.00 3.51
237 238 0.620556 ACCACCTCCACATCCACATC 59.379 55.000 0.00 0.00 0.00 3.06
238 239 0.329261 CACCACCTCCACATCCACAT 59.671 55.000 0.00 0.00 0.00 3.21
239 240 1.760527 CACCACCTCCACATCCACA 59.239 57.895 0.00 0.00 0.00 4.17
240 241 1.002134 CCACCACCTCCACATCCAC 60.002 63.158 0.00 0.00 0.00 4.02
241 242 1.463214 ACCACCACCTCCACATCCA 60.463 57.895 0.00 0.00 0.00 3.41
242 243 1.002134 CACCACCACCTCCACATCC 60.002 63.158 0.00 0.00 0.00 3.51
243 244 1.002134 CCACCACCACCTCCACATC 60.002 63.158 0.00 0.00 0.00 3.06
244 245 0.846427 ATCCACCACCACCTCCACAT 60.846 55.000 0.00 0.00 0.00 3.21
245 246 0.178888 TATCCACCACCACCTCCACA 60.179 55.000 0.00 0.00 0.00 4.17
246 247 0.252197 GTATCCACCACCACCTCCAC 59.748 60.000 0.00 0.00 0.00 4.02
247 248 0.912487 GGTATCCACCACCACCTCCA 60.912 60.000 0.00 0.00 45.04 3.86
248 249 1.912971 GGTATCCACCACCACCTCC 59.087 63.158 0.00 0.00 45.04 4.30
259 260 2.665089 CCGGGCACTGTGGTATCCA 61.665 63.158 10.21 0.00 0.00 3.41
260 261 2.189521 CCGGGCACTGTGGTATCC 59.810 66.667 10.21 1.75 0.00 2.59
261 262 1.449601 CACCGGGCACTGTGGTATC 60.450 63.158 6.32 0.00 33.82 2.24
262 263 2.668632 CACCGGGCACTGTGGTAT 59.331 61.111 6.32 0.00 33.82 2.73
263 264 4.323477 GCACCGGGCACTGTGGTA 62.323 66.667 12.75 0.00 43.97 3.25
281 282 3.356766 TAGGATCCCCCACCCCCAC 62.357 68.421 8.55 0.00 37.41 4.61
282 283 2.967612 TAGGATCCCCCACCCCCA 60.968 66.667 8.55 0.00 37.41 4.96
283 284 2.121918 CTAGGATCCCCCACCCCC 60.122 72.222 8.55 0.00 37.41 5.40
284 285 1.152008 CTCTAGGATCCCCCACCCC 60.152 68.421 8.55 0.00 37.41 4.95
285 286 1.152008 CCTCTAGGATCCCCCACCC 60.152 68.421 8.55 0.00 37.39 4.61
286 287 1.152008 CCCTCTAGGATCCCCCACC 60.152 68.421 8.55 0.00 38.24 4.61
287 288 1.152008 CCCCTCTAGGATCCCCCAC 60.152 68.421 8.55 0.00 38.24 4.61
288 289 0.939443 TTCCCCTCTAGGATCCCCCA 60.939 60.000 8.55 0.00 38.24 4.96
289 290 0.178888 CTTCCCCTCTAGGATCCCCC 60.179 65.000 8.55 0.00 38.24 5.40
290 291 0.868186 TCTTCCCCTCTAGGATCCCC 59.132 60.000 8.55 0.00 38.24 4.81
291 292 2.615391 CTTCTTCCCCTCTAGGATCCC 58.385 57.143 8.55 0.00 38.24 3.85
292 293 2.090437 ACCTTCTTCCCCTCTAGGATCC 60.090 54.545 2.48 2.48 38.24 3.36
293 294 2.969262 CACCTTCTTCCCCTCTAGGATC 59.031 54.545 0.00 0.00 38.24 3.36
294 295 2.360854 CCACCTTCTTCCCCTCTAGGAT 60.361 54.545 0.00 0.00 38.24 3.24
295 296 1.008449 CCACCTTCTTCCCCTCTAGGA 59.992 57.143 0.00 0.00 38.24 2.94
296 297 1.501582 CCACCTTCTTCCCCTCTAGG 58.498 60.000 0.00 0.00 0.00 3.02
297 298 1.501582 CCCACCTTCTTCCCCTCTAG 58.498 60.000 0.00 0.00 0.00 2.43
298 299 0.044244 CCCCACCTTCTTCCCCTCTA 59.956 60.000 0.00 0.00 0.00 2.43
299 300 1.229984 CCCCACCTTCTTCCCCTCT 60.230 63.158 0.00 0.00 0.00 3.69
300 301 2.985116 GCCCCACCTTCTTCCCCTC 61.985 68.421 0.00 0.00 0.00 4.30
301 302 2.941583 GCCCCACCTTCTTCCCCT 60.942 66.667 0.00 0.00 0.00 4.79
302 303 4.426313 CGCCCCACCTTCTTCCCC 62.426 72.222 0.00 0.00 0.00 4.81
303 304 2.295602 TACGCCCCACCTTCTTCCC 61.296 63.158 0.00 0.00 0.00 3.97
304 305 1.078637 GTACGCCCCACCTTCTTCC 60.079 63.158 0.00 0.00 0.00 3.46
305 306 1.447314 CGTACGCCCCACCTTCTTC 60.447 63.158 0.52 0.00 0.00 2.87
306 307 2.660802 CGTACGCCCCACCTTCTT 59.339 61.111 0.52 0.00 0.00 2.52
307 308 3.387947 CCGTACGCCCCACCTTCT 61.388 66.667 10.49 0.00 0.00 2.85
308 309 4.462280 CCCGTACGCCCCACCTTC 62.462 72.222 10.49 0.00 0.00 3.46
557 558 1.078426 CTACCTTCTTGCCCACCGG 60.078 63.158 0.00 0.00 0.00 5.28
558 559 1.078426 CCTACCTTCTTGCCCACCG 60.078 63.158 0.00 0.00 0.00 4.94
559 560 1.303282 CCCTACCTTCTTGCCCACC 59.697 63.158 0.00 0.00 0.00 4.61
560 561 1.205460 TCCCCTACCTTCTTGCCCAC 61.205 60.000 0.00 0.00 0.00 4.61
561 562 0.253630 ATCCCCTACCTTCTTGCCCA 60.254 55.000 0.00 0.00 0.00 5.36
562 563 0.474614 GATCCCCTACCTTCTTGCCC 59.525 60.000 0.00 0.00 0.00 5.36
563 564 0.106894 CGATCCCCTACCTTCTTGCC 59.893 60.000 0.00 0.00 0.00 4.52
564 565 0.106894 CCGATCCCCTACCTTCTTGC 59.893 60.000 0.00 0.00 0.00 4.01
565 566 0.759346 CCCGATCCCCTACCTTCTTG 59.241 60.000 0.00 0.00 0.00 3.02
566 567 0.400093 CCCCGATCCCCTACCTTCTT 60.400 60.000 0.00 0.00 0.00 2.52
567 568 1.236282 CCCCGATCCCCTACCTTCT 59.764 63.158 0.00 0.00 0.00 2.85
568 569 1.842010 CCCCCGATCCCCTACCTTC 60.842 68.421 0.00 0.00 0.00 3.46
569 570 2.289341 CCCCCGATCCCCTACCTT 59.711 66.667 0.00 0.00 0.00 3.50
587 588 3.670377 GAAACACCCGCACCCAGC 61.670 66.667 0.00 0.00 40.87 4.85
588 589 3.353836 CGAAACACCCGCACCCAG 61.354 66.667 0.00 0.00 0.00 4.45
589 590 4.939368 CCGAAACACCCGCACCCA 62.939 66.667 0.00 0.00 0.00 4.51
591 592 4.629523 TCCCGAAACACCCGCACC 62.630 66.667 0.00 0.00 0.00 5.01
592 593 2.592287 TTCCCGAAACACCCGCAC 60.592 61.111 0.00 0.00 0.00 5.34
593 594 2.281208 CTTCCCGAAACACCCGCA 60.281 61.111 0.00 0.00 0.00 5.69
594 595 3.053896 CCTTCCCGAAACACCCGC 61.054 66.667 0.00 0.00 0.00 6.13
595 596 0.953960 CTTCCTTCCCGAAACACCCG 60.954 60.000 0.00 0.00 0.00 5.28
596 597 0.399075 TCTTCCTTCCCGAAACACCC 59.601 55.000 0.00 0.00 0.00 4.61
597 598 2.152016 CTTCTTCCTTCCCGAAACACC 58.848 52.381 0.00 0.00 0.00 4.16
598 599 2.152016 CCTTCTTCCTTCCCGAAACAC 58.848 52.381 0.00 0.00 0.00 3.32
599 600 1.772453 ACCTTCTTCCTTCCCGAAACA 59.228 47.619 0.00 0.00 0.00 2.83
600 601 2.152016 CACCTTCTTCCTTCCCGAAAC 58.848 52.381 0.00 0.00 0.00 2.78
601 602 1.073284 CCACCTTCTTCCTTCCCGAAA 59.927 52.381 0.00 0.00 0.00 3.46
602 603 0.690762 CCACCTTCTTCCTTCCCGAA 59.309 55.000 0.00 0.00 0.00 4.30
603 604 1.198759 CCCACCTTCTTCCTTCCCGA 61.199 60.000 0.00 0.00 0.00 5.14
604 605 1.299976 CCCACCTTCTTCCTTCCCG 59.700 63.158 0.00 0.00 0.00 5.14
605 606 0.845102 TCCCCACCTTCTTCCTTCCC 60.845 60.000 0.00 0.00 0.00 3.97
606 607 1.064389 CATCCCCACCTTCTTCCTTCC 60.064 57.143 0.00 0.00 0.00 3.46
607 608 1.064389 CCATCCCCACCTTCTTCCTTC 60.064 57.143 0.00 0.00 0.00 3.46
608 609 1.002857 CCATCCCCACCTTCTTCCTT 58.997 55.000 0.00 0.00 0.00 3.36
609 610 0.921256 CCCATCCCCACCTTCTTCCT 60.921 60.000 0.00 0.00 0.00 3.36
610 611 1.615262 CCCATCCCCACCTTCTTCC 59.385 63.158 0.00 0.00 0.00 3.46
611 612 1.076705 GCCCATCCCCACCTTCTTC 60.077 63.158 0.00 0.00 0.00 2.87
612 613 1.856873 TGCCCATCCCCACCTTCTT 60.857 57.895 0.00 0.00 0.00 2.52
613 614 2.204291 TGCCCATCCCCACCTTCT 60.204 61.111 0.00 0.00 0.00 2.85
614 615 2.043953 GTGCCCATCCCCACCTTC 60.044 66.667 0.00 0.00 0.00 3.46
615 616 4.047125 CGTGCCCATCCCCACCTT 62.047 66.667 0.00 0.00 0.00 3.50
631 632 3.250734 TAACACCCACCCCACCCG 61.251 66.667 0.00 0.00 0.00 5.28
632 633 2.761160 CTAACACCCACCCCACCC 59.239 66.667 0.00 0.00 0.00 4.61
633 634 1.848886 CTCCTAACACCCACCCCACC 61.849 65.000 0.00 0.00 0.00 4.61
634 635 0.838987 TCTCCTAACACCCACCCCAC 60.839 60.000 0.00 0.00 0.00 4.61
635 636 0.104356 TTCTCCTAACACCCACCCCA 60.104 55.000 0.00 0.00 0.00 4.96
636 637 1.296002 ATTCTCCTAACACCCACCCC 58.704 55.000 0.00 0.00 0.00 4.95
637 638 3.778629 TCTTATTCTCCTAACACCCACCC 59.221 47.826 0.00 0.00 0.00 4.61
638 639 5.431179 TTCTTATTCTCCTAACACCCACC 57.569 43.478 0.00 0.00 0.00 4.61
639 640 8.265764 ACTATTTCTTATTCTCCTAACACCCAC 58.734 37.037 0.00 0.00 0.00 4.61
640 641 8.265055 CACTATTTCTTATTCTCCTAACACCCA 58.735 37.037 0.00 0.00 0.00 4.51
641 642 8.265764 ACACTATTTCTTATTCTCCTAACACCC 58.734 37.037 0.00 0.00 0.00 4.61
642 643 9.668497 AACACTATTTCTTATTCTCCTAACACC 57.332 33.333 0.00 0.00 0.00 4.16
648 649 8.982723 TCTGCTAACACTATTTCTTATTCTCCT 58.017 33.333 0.00 0.00 0.00 3.69
649 650 9.601217 TTCTGCTAACACTATTTCTTATTCTCC 57.399 33.333 0.00 0.00 0.00 3.71
656 657 9.103861 GAGCTTATTCTGCTAACACTATTTCTT 57.896 33.333 0.00 0.00 41.30 2.52
657 658 8.482128 AGAGCTTATTCTGCTAACACTATTTCT 58.518 33.333 0.00 0.00 41.30 2.52
658 659 8.655651 AGAGCTTATTCTGCTAACACTATTTC 57.344 34.615 0.00 0.00 41.30 2.17
661 662 9.757227 CTTAAGAGCTTATTCTGCTAACACTAT 57.243 33.333 0.00 0.00 41.30 2.12
662 663 8.198109 CCTTAAGAGCTTATTCTGCTAACACTA 58.802 37.037 3.36 0.00 41.30 2.74
663 664 7.044798 CCTTAAGAGCTTATTCTGCTAACACT 58.955 38.462 3.36 0.00 41.30 3.55
664 665 7.042335 TCCTTAAGAGCTTATTCTGCTAACAC 58.958 38.462 3.36 0.00 41.30 3.32
665 666 7.182817 TCCTTAAGAGCTTATTCTGCTAACA 57.817 36.000 3.36 0.00 41.30 2.41
666 667 7.707774 CTCCTTAAGAGCTTATTCTGCTAAC 57.292 40.000 3.36 0.00 41.30 2.34
684 685 9.364653 GGAGGTCTATTCTAATAACACTCCTTA 57.635 37.037 13.58 0.00 0.00 2.69
685 686 8.068733 AGGAGGTCTATTCTAATAACACTCCTT 58.931 37.037 15.81 7.18 31.90 3.36
686 687 7.597327 AGGAGGTCTATTCTAATAACACTCCT 58.403 38.462 15.81 15.81 0.00 3.69
687 688 7.842887 AGGAGGTCTATTCTAATAACACTCC 57.157 40.000 13.26 13.26 0.00 3.85
689 690 9.145442 GGTTAGGAGGTCTATTCTAATAACACT 57.855 37.037 0.00 0.00 0.00 3.55
690 691 9.145442 AGGTTAGGAGGTCTATTCTAATAACAC 57.855 37.037 0.00 0.00 0.00 3.32
691 692 9.144298 CAGGTTAGGAGGTCTATTCTAATAACA 57.856 37.037 0.00 0.00 0.00 2.41
692 693 9.145442 ACAGGTTAGGAGGTCTATTCTAATAAC 57.855 37.037 0.00 0.00 0.00 1.89
693 694 9.725206 AACAGGTTAGGAGGTCTATTCTAATAA 57.275 33.333 0.00 0.00 0.00 1.40
694 695 9.725206 AAACAGGTTAGGAGGTCTATTCTAATA 57.275 33.333 0.00 0.00 0.00 0.98
695 696 8.625467 AAACAGGTTAGGAGGTCTATTCTAAT 57.375 34.615 0.00 0.00 0.00 1.73
696 697 7.899709 AGAAACAGGTTAGGAGGTCTATTCTAA 59.100 37.037 0.00 0.00 0.00 2.10
697 698 7.420029 AGAAACAGGTTAGGAGGTCTATTCTA 58.580 38.462 0.00 0.00 0.00 2.10
698 699 6.265304 AGAAACAGGTTAGGAGGTCTATTCT 58.735 40.000 0.00 0.00 0.00 2.40
699 700 6.547930 AGAAACAGGTTAGGAGGTCTATTC 57.452 41.667 0.00 0.00 0.00 1.75
700 701 6.954352 AAGAAACAGGTTAGGAGGTCTATT 57.046 37.500 0.00 0.00 0.00 1.73
701 702 6.954352 AAAGAAACAGGTTAGGAGGTCTAT 57.046 37.500 0.00 0.00 0.00 1.98
702 703 6.239800 GGAAAAGAAACAGGTTAGGAGGTCTA 60.240 42.308 0.00 0.00 0.00 2.59
703 704 5.456330 GGAAAAGAAACAGGTTAGGAGGTCT 60.456 44.000 0.00 0.00 0.00 3.85
704 705 4.760715 GGAAAAGAAACAGGTTAGGAGGTC 59.239 45.833 0.00 0.00 0.00 3.85
705 706 4.447325 GGGAAAAGAAACAGGTTAGGAGGT 60.447 45.833 0.00 0.00 0.00 3.85
869 870 5.215252 GCTACAAGCCTACAAGATGGATA 57.785 43.478 0.00 0.00 34.48 2.59
1034 1072 2.594303 CCTTGCCGCACACCTTCA 60.594 61.111 0.00 0.00 0.00 3.02
1156 1194 2.224606 CTTGTTCTTGAGGCAGAGCAA 58.775 47.619 3.31 3.31 40.51 3.91
1202 1240 2.782222 TAGGTGATGAGGCGTCGGC 61.782 63.158 11.43 11.43 38.90 5.54
1259 1297 9.413734 AGGAGAATGAAATAGTATGGAAAAAGG 57.586 33.333 0.00 0.00 0.00 3.11
1336 1381 2.492019 TGTTCGATCTGGCATCTACG 57.508 50.000 0.00 0.00 0.00 3.51
1337 1382 3.553511 CAGTTGTTCGATCTGGCATCTAC 59.446 47.826 0.00 0.00 0.00 2.59
1396 1441 0.035152 AATCAAGATCTGCGGGCACA 60.035 50.000 0.00 0.00 0.00 4.57
1512 1580 2.019948 ATCGCATCATCCATCCATCG 57.980 50.000 0.00 0.00 0.00 3.84
1619 1693 0.759959 TTGGGTCGAACTAACTGCCA 59.240 50.000 0.00 0.00 0.00 4.92
1700 1806 1.077787 CTAACTGCCGGGGATTGCA 60.078 57.895 2.18 0.00 35.86 4.08
1745 1854 6.984740 TTTCTTTCATTCATTTTTCGACCG 57.015 33.333 0.00 0.00 0.00 4.79
1933 2046 2.872858 GCGTGCTAGAAATAAGGGAAGG 59.127 50.000 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.