Multiple sequence alignment - TraesCS7B01G176600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G176600 chr7B 100.000 4023 0 0 1 4023 249673755 249677777 0.000000e+00 7430.0
1 TraesCS7B01G176600 chr7B 97.605 167 4 0 1133 1299 497576621 497576787 1.830000e-73 287.0
2 TraesCS7B01G176600 chr7B 97.546 163 4 0 1136 1298 544113204 544113042 3.060000e-71 279.0
3 TraesCS7B01G176600 chr7B 90.000 100 10 0 3673 3772 1094554 1094653 3.260000e-26 130.0
4 TraesCS7B01G176600 chr7B 82.822 163 10 7 3625 3769 734414828 734414990 3.260000e-26 130.0
5 TraesCS7B01G176600 chr7B 89.796 98 9 1 3679 3776 111615249 111615153 1.520000e-24 124.0
6 TraesCS7B01G176600 chr7A 94.749 2114 85 15 1297 3401 294559940 294562036 0.000000e+00 3265.0
7 TraesCS7B01G176600 chr7A 88.899 1153 70 19 2 1137 294558830 294559941 0.000000e+00 1367.0
8 TraesCS7B01G176600 chr7A 95.556 90 2 2 3410 3497 294562252 294562341 4.190000e-30 143.0
9 TraesCS7B01G176600 chr7A 97.826 46 1 0 3780 3825 294562289 294562334 3.330000e-11 80.5
10 TraesCS7B01G176600 chr7A 88.136 59 6 1 3625 3683 517575978 517576035 7.210000e-08 69.4
11 TraesCS7B01G176600 chr7D 93.233 1522 66 11 1976 3491 268567226 268568716 0.000000e+00 2206.0
12 TraesCS7B01G176600 chr7D 91.810 1160 64 14 2 1137 268564970 268566122 0.000000e+00 1587.0
13 TraesCS7B01G176600 chr7D 95.394 673 22 6 1297 1966 268566121 268566787 0.000000e+00 1062.0
14 TraesCS7B01G176600 chr7D 95.930 172 6 1 1136 1307 416628253 416628423 1.100000e-70 278.0
15 TraesCS7B01G176600 chr7D 88.312 154 11 5 3487 3633 2259551 2259704 1.150000e-40 178.0
16 TraesCS7B01G176600 chr7D 83.957 187 7 4 3770 3934 268568758 268568943 1.500000e-34 158.0
17 TraesCS7B01G176600 chr7D 98.077 52 1 0 3780 3831 268568716 268568767 1.540000e-14 91.6
18 TraesCS7B01G176600 chr7D 100.000 46 0 0 3780 3825 268568670 268568715 7.160000e-13 86.1
19 TraesCS7B01G176600 chr4B 98.171 164 3 0 1135 1298 431792317 431792154 1.830000e-73 287.0
20 TraesCS7B01G176600 chr4B 88.333 180 20 1 2183 2362 4896048 4896226 8.760000e-52 215.0
21 TraesCS7B01G176600 chr4B 89.216 102 11 0 3673 3774 90322869 90322970 1.170000e-25 128.0
22 TraesCS7B01G176600 chr2B 97.059 170 5 0 1136 1305 664125200 664125031 1.830000e-73 287.0
23 TraesCS7B01G176600 chr2B 95.954 173 5 2 1128 1298 713695787 713695959 3.060000e-71 279.0
24 TraesCS7B01G176600 chr2B 94.444 180 9 1 1120 1298 485894140 485894319 3.960000e-70 276.0
25 TraesCS7B01G176600 chr2B 85.417 144 20 1 3626 3769 453225991 453226133 9.010000e-32 148.0
26 TraesCS7B01G176600 chr6D 97.561 164 4 0 1135 1298 24998195 24998358 8.510000e-72 281.0
27 TraesCS7B01G176600 chr6D 94.054 185 9 2 1134 1317 90890446 90890263 3.060000e-71 279.0
28 TraesCS7B01G176600 chr6D 81.818 308 29 13 3486 3769 41542343 41542647 2.420000e-57 233.0
29 TraesCS7B01G176600 chr4A 88.827 179 20 0 2183 2361 600899826 600899648 1.880000e-53 220.0
30 TraesCS7B01G176600 chr4A 89.691 97 10 0 3673 3769 666684370 666684466 1.520000e-24 124.0
31 TraesCS7B01G176600 chr4D 88.571 175 20 0 2183 2357 3722371 3722197 3.150000e-51 213.0
32 TraesCS7B01G176600 chr4D 89.796 147 9 4 3487 3627 93336683 93336829 2.470000e-42 183.0
33 TraesCS7B01G176600 chr6B 92.466 146 5 4 3488 3627 459754979 459755124 1.900000e-48 204.0
34 TraesCS7B01G176600 chr6B 90.541 148 8 4 3486 3627 25248001 25247854 1.480000e-44 191.0
35 TraesCS7B01G176600 chr1D 89.796 147 9 4 3487 3627 68439329 68439183 2.470000e-42 183.0
36 TraesCS7B01G176600 chr1A 90.345 145 7 5 3485 3627 584472138 584471999 2.470000e-42 183.0
37 TraesCS7B01G176600 chr1A 90.426 94 9 0 3679 3772 559036661 559036568 1.520000e-24 124.0
38 TraesCS7B01G176600 chr2A 89.726 146 9 4 3488 3627 621785570 621785715 8.880000e-42 182.0
39 TraesCS7B01G176600 chr5B 85.311 177 19 5 3476 3645 594098986 594099162 4.130000e-40 176.0
40 TraesCS7B01G176600 chr5B 83.333 150 18 6 3623 3772 194356432 194356290 9.070000e-27 132.0
41 TraesCS7B01G176600 chr3D 92.553 94 7 0 3679 3772 400790287 400790194 7.010000e-28 135.0
42 TraesCS7B01G176600 chrUn 93.258 89 5 1 3673 3761 260698927 260699014 3.260000e-26 130.0
43 TraesCS7B01G176600 chrUn 91.579 95 7 1 3673 3767 285567204 285567111 3.260000e-26 130.0
44 TraesCS7B01G176600 chrUn 87.097 62 6 2 3623 3683 88818787 88818727 7.210000e-08 69.4
45 TraesCS7B01G176600 chr5A 90.000 60 5 1 3624 3683 417049803 417049745 4.310000e-10 76.8
46 TraesCS7B01G176600 chr5A 88.136 59 6 1 3625 3683 456087148 456087091 7.210000e-08 69.4
47 TraesCS7B01G176600 chr5A 86.667 60 7 1 3625 3684 596563705 596563647 9.330000e-07 65.8
48 TraesCS7B01G176600 chr6A 87.931 58 6 1 3626 3683 494868250 494868194 2.590000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G176600 chr7B 249673755 249677777 4022 False 7430.000000 7430 100.000000 1 4023 1 chr7B.!!$F2 4022
1 TraesCS7B01G176600 chr7A 294558830 294562341 3511 False 1213.875000 3265 94.257500 2 3825 4 chr7A.!!$F2 3823
2 TraesCS7B01G176600 chr7D 268564970 268568943 3973 False 865.116667 2206 93.745167 2 3934 6 chr7D.!!$F3 3932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
301 317 0.536006 GGAACAGTCAAGCAGGCACT 60.536 55.000 0.0 0.0 43.88 4.40 F
425 443 0.650512 GTTGACGTGTCCACAGTGTG 59.349 55.000 16.7 16.7 0.00 3.82 F
843 869 1.129811 CCACGCCAAAATCCGTAAGTC 59.870 52.381 0.0 0.0 35.69 3.01 F
2470 2935 0.037975 GTGCATTGTGAGCCTTTGGG 60.038 55.000 0.0 0.0 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1282 1310 1.006758 TGACATACTCCCTCCGTTCCT 59.993 52.381 0.00 0.0 0.00 3.36 R
1283 1311 1.481871 TGACATACTCCCTCCGTTCC 58.518 55.000 0.00 0.0 0.00 3.62 R
2765 3230 0.670546 CGTCCATCGACAAGTTGCCT 60.671 55.000 1.81 0.0 42.86 4.75 R
3940 4636 0.036671 GGTCAATTCGGTCGTTCCCT 60.037 55.000 0.00 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 8.512800 TTGAAACTTTTGCAATTTTCCAAAAC 57.487 26.923 18.68 0.48 36.38 2.43
76 77 6.523840 TCCAAAACAAAATGGATGAAAGAGG 58.476 36.000 0.00 0.00 40.74 3.69
131 135 5.047377 TCACAAACCTGAGAAAGCAAAAACT 60.047 36.000 0.00 0.00 0.00 2.66
137 153 4.320788 CCTGAGAAAGCAAAAACTAGCCTG 60.321 45.833 0.00 0.00 0.00 4.85
149 165 0.613777 CTAGCCTGGAAAACCGGAGT 59.386 55.000 9.46 0.00 0.00 3.85
157 173 4.564821 CCTGGAAAACCGGAGTGAGATAAA 60.565 45.833 9.46 0.00 0.00 1.40
166 182 3.744660 GGAGTGAGATAAAATGGGCGAT 58.255 45.455 0.00 0.00 0.00 4.58
167 183 3.499918 GGAGTGAGATAAAATGGGCGATG 59.500 47.826 0.00 0.00 0.00 3.84
171 187 3.136443 TGAGATAAAATGGGCGATGGTCT 59.864 43.478 0.00 0.00 0.00 3.85
180 196 1.066430 GGGCGATGGTCTAGTGACAAA 60.066 52.381 0.00 0.00 44.61 2.83
196 212 3.017442 GACAAACTAGGGAGGAAATGGC 58.983 50.000 0.00 0.00 0.00 4.40
198 214 0.927029 AACTAGGGAGGAAATGGCCC 59.073 55.000 0.00 0.00 42.37 5.80
283 299 3.490761 GGCATCACCAAATATTTCCGTGG 60.491 47.826 18.36 11.86 38.86 4.94
299 315 0.819259 GTGGAACAGTCAAGCAGGCA 60.819 55.000 0.00 0.00 41.80 4.75
301 317 0.536006 GGAACAGTCAAGCAGGCACT 60.536 55.000 0.00 0.00 43.88 4.40
347 363 6.849697 ACCTAATGTATCCTCCTTGTCCAATA 59.150 38.462 0.00 0.00 0.00 1.90
420 436 1.411246 AGCTAAGTTGACGTGTCCACA 59.589 47.619 0.00 0.00 0.00 4.17
425 443 0.650512 GTTGACGTGTCCACAGTGTG 59.349 55.000 16.70 16.70 0.00 3.82
427 445 2.584970 ACGTGTCCACAGTGTGCG 60.585 61.111 18.21 17.10 31.34 5.34
480 498 5.607171 CTTCCCTAAGATTGTACCTATGGGT 59.393 44.000 5.87 5.87 41.15 4.51
547 565 3.303329 CGATTTGATGATCCGCGTTGAAT 60.303 43.478 4.92 0.00 0.00 2.57
761 779 2.767505 GGTGCCGAACATATAAGAGGG 58.232 52.381 0.00 0.00 0.00 4.30
800 818 2.444421 GTCCTCTTCGTTACTCCCTCA 58.556 52.381 0.00 0.00 0.00 3.86
802 820 1.477295 CCTCTTCGTTACTCCCTCACC 59.523 57.143 0.00 0.00 0.00 4.02
843 869 1.129811 CCACGCCAAAATCCGTAAGTC 59.870 52.381 0.00 0.00 35.69 3.01
1049 1077 6.473778 CGTCGAATCACATCTCATCTAGTTTT 59.526 38.462 0.00 0.00 0.00 2.43
1050 1078 7.009631 CGTCGAATCACATCTCATCTAGTTTTT 59.990 37.037 0.00 0.00 0.00 1.94
1130 1158 9.701098 TGTTATCGAACACTGTAAATTACTTCT 57.299 29.630 4.67 0.00 40.72 2.85
1145 1173 7.469537 AATTACTTCTGATATACTCCCTCCG 57.530 40.000 0.00 0.00 0.00 4.63
1146 1174 4.456662 ACTTCTGATATACTCCCTCCGT 57.543 45.455 0.00 0.00 0.00 4.69
1147 1175 4.805744 ACTTCTGATATACTCCCTCCGTT 58.194 43.478 0.00 0.00 0.00 4.44
1148 1176 4.828387 ACTTCTGATATACTCCCTCCGTTC 59.172 45.833 0.00 0.00 0.00 3.95
1149 1177 3.764218 TCTGATATACTCCCTCCGTTCC 58.236 50.000 0.00 0.00 0.00 3.62
1150 1178 3.398292 TCTGATATACTCCCTCCGTTCCT 59.602 47.826 0.00 0.00 0.00 3.36
1151 1179 4.600547 TCTGATATACTCCCTCCGTTCCTA 59.399 45.833 0.00 0.00 0.00 2.94
1152 1180 5.074102 TCTGATATACTCCCTCCGTTCCTAA 59.926 44.000 0.00 0.00 0.00 2.69
1153 1181 5.708544 TGATATACTCCCTCCGTTCCTAAA 58.291 41.667 0.00 0.00 0.00 1.85
1154 1182 6.320518 TGATATACTCCCTCCGTTCCTAAAT 58.679 40.000 0.00 0.00 0.00 1.40
1155 1183 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
1156 1184 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
1157 1185 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
1158 1186 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
1159 1187 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
1160 1188 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
1161 1189 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
1162 1190 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
1163 1191 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1164 1192 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1165 1193 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
1166 1194 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
1167 1195 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
1168 1196 7.816031 TCCGTTCCTAAATGTAAGTCTTTGTAG 59.184 37.037 0.00 0.00 0.00 2.74
1169 1197 7.816031 CCGTTCCTAAATGTAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
1170 1198 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
1171 1199 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
1186 1214 9.582431 TCTTTGTAGAGATTTCACTATAAACCG 57.418 33.333 3.91 0.00 31.22 4.44
1187 1215 7.766219 TTGTAGAGATTTCACTATAAACCGC 57.234 36.000 0.00 0.00 0.00 5.68
1188 1216 6.869695 TGTAGAGATTTCACTATAAACCGCA 58.130 36.000 0.00 0.00 0.00 5.69
1189 1217 7.497595 TGTAGAGATTTCACTATAAACCGCAT 58.502 34.615 0.00 0.00 0.00 4.73
1190 1218 8.635328 TGTAGAGATTTCACTATAAACCGCATA 58.365 33.333 0.00 0.00 0.00 3.14
1191 1219 7.948278 AGAGATTTCACTATAAACCGCATAC 57.052 36.000 0.00 0.00 0.00 2.39
1192 1220 6.641314 AGAGATTTCACTATAAACCGCATACG 59.359 38.462 0.00 0.00 39.67 3.06
1208 1236 5.519722 CGCATACGGATGTATATAGATGCA 58.480 41.667 9.90 0.00 39.28 3.96
1209 1237 6.152379 CGCATACGGATGTATATAGATGCAT 58.848 40.000 9.90 0.00 40.68 3.96
1210 1238 6.642540 CGCATACGGATGTATATAGATGCATT 59.357 38.462 9.90 1.23 38.38 3.56
1211 1239 7.169813 CGCATACGGATGTATATAGATGCATTT 59.830 37.037 9.90 0.00 38.38 2.32
1212 1240 8.830580 GCATACGGATGTATATAGATGCATTTT 58.169 33.333 9.90 0.00 38.38 1.82
1216 1244 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
1238 1266 8.992835 AAGTTTAGATTCATTCATTTTGCTCC 57.007 30.769 0.00 0.00 0.00 4.70
1239 1267 8.125978 AGTTTAGATTCATTCATTTTGCTCCA 57.874 30.769 0.00 0.00 0.00 3.86
1240 1268 8.755977 AGTTTAGATTCATTCATTTTGCTCCAT 58.244 29.630 0.00 0.00 0.00 3.41
1249 1277 9.453572 TCATTCATTTTGCTCCATATATAGTCC 57.546 33.333 0.00 0.00 0.00 3.85
1250 1278 9.234827 CATTCATTTTGCTCCATATATAGTCCA 57.765 33.333 0.00 0.00 0.00 4.02
1251 1279 8.621532 TTCATTTTGCTCCATATATAGTCCAC 57.378 34.615 0.00 0.00 0.00 4.02
1252 1280 7.168219 TCATTTTGCTCCATATATAGTCCACC 58.832 38.462 0.00 0.00 0.00 4.61
1253 1281 6.763715 TTTTGCTCCATATATAGTCCACCT 57.236 37.500 0.00 0.00 0.00 4.00
1254 1282 7.865530 TTTTGCTCCATATATAGTCCACCTA 57.134 36.000 0.00 0.00 0.00 3.08
1255 1283 7.482169 TTTGCTCCATATATAGTCCACCTAG 57.518 40.000 0.00 0.00 0.00 3.02
1256 1284 6.153942 TGCTCCATATATAGTCCACCTAGT 57.846 41.667 0.00 0.00 0.00 2.57
1257 1285 5.952347 TGCTCCATATATAGTCCACCTAGTG 59.048 44.000 0.00 0.00 0.00 2.74
1272 1300 6.531503 CACCTAGTGGAATCTCTACAAAGA 57.468 41.667 0.00 0.00 37.04 2.52
1273 1301 6.334202 CACCTAGTGGAATCTCTACAAAGAC 58.666 44.000 0.00 0.00 37.04 3.01
1274 1302 6.153680 CACCTAGTGGAATCTCTACAAAGACT 59.846 42.308 0.00 0.00 37.04 3.24
1275 1303 6.726764 ACCTAGTGGAATCTCTACAAAGACTT 59.273 38.462 0.00 0.00 37.04 3.01
1276 1304 7.894364 ACCTAGTGGAATCTCTACAAAGACTTA 59.106 37.037 0.00 0.00 37.04 2.24
1277 1305 8.919145 CCTAGTGGAATCTCTACAAAGACTTAT 58.081 37.037 0.00 0.00 34.57 1.73
1291 1319 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
1292 1320 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
1293 1321 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1294 1322 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1295 1323 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1314 1342 4.581824 GGGAGTATGTCATTTGCATGTCAT 59.418 41.667 5.57 5.57 40.77 3.06
1330 1358 5.008911 GCATGTCATTGTGCTGTTGGATATA 59.991 40.000 0.00 0.00 38.30 0.86
1331 1359 6.432936 CATGTCATTGTGCTGTTGGATATAC 58.567 40.000 0.00 0.00 0.00 1.47
1368 1396 9.308318 GAGTTAAATATCTTGTTCCAGAGAGAC 57.692 37.037 0.00 0.00 0.00 3.36
1557 1588 7.789759 GCGAAAGAGATTGATTAAATGTAGTCG 59.210 37.037 0.00 0.00 0.00 4.18
1589 1620 7.425606 AGATTAACTTGCTAAAACTTGTGGTG 58.574 34.615 0.00 0.00 0.00 4.17
1741 1772 0.671781 GTGACGCTGTCAAGGATGCT 60.672 55.000 11.92 0.00 44.49 3.79
1825 1856 5.582665 GCTTCAGATCGGTCTCAAAAACTAT 59.417 40.000 0.00 0.00 30.42 2.12
1951 1982 7.456725 ACCAGGTAATGATTCTCCTTGATATG 58.543 38.462 0.00 0.00 0.00 1.78
1958 1989 6.053632 TGATTCTCCTTGATATGTGTGTGT 57.946 37.500 0.00 0.00 0.00 3.72
1986 2446 8.557029 AGTTTTGTATTAACTCAACTACAGCAC 58.443 33.333 0.00 0.00 30.20 4.40
2017 2477 7.809331 TGAAATGCTTATGTTTTGACAGTGATC 59.191 33.333 0.00 0.00 0.00 2.92
2026 2486 0.950555 TGACAGTGATCGTGCCTTGC 60.951 55.000 0.00 0.00 0.00 4.01
2041 2501 3.243035 TGCCTTGCATGTATCAATTACGC 60.243 43.478 0.00 0.00 31.71 4.42
2366 2828 2.243221 AGGCAGGCAAGTTATCCATCTT 59.757 45.455 0.00 0.00 0.00 2.40
2470 2935 0.037975 GTGCATTGTGAGCCTTTGGG 60.038 55.000 0.00 0.00 0.00 4.12
2502 2967 9.631452 GCAGAAAAAGCAATTAGACTATTTTCT 57.369 29.630 11.10 11.10 42.90 2.52
2541 3006 3.181479 TGTTGTTGCTCTAGAACGTCACT 60.181 43.478 0.00 0.00 0.00 3.41
2543 3008 2.361119 TGTTGCTCTAGAACGTCACTGT 59.639 45.455 0.00 0.00 0.00 3.55
2564 3029 8.140628 CACTGTATATTGCTATGTTCTCTCTGT 58.859 37.037 0.00 0.00 0.00 3.41
2585 3050 2.166270 GCTGTCTGCTAGTGTTGGC 58.834 57.895 0.00 0.00 38.95 4.52
2590 3055 0.108804 TCTGCTAGTGTTGGCGCTAC 60.109 55.000 7.64 6.82 36.72 3.58
2640 3105 8.945195 ATATCTTTTCTAATCCAATCATGCCA 57.055 30.769 0.00 0.00 0.00 4.92
2641 3106 6.455360 TCTTTTCTAATCCAATCATGCCAC 57.545 37.500 0.00 0.00 0.00 5.01
2646 3111 1.105167 ATCCAATCATGCCACTGCCG 61.105 55.000 0.00 0.00 36.33 5.69
2765 3230 1.612950 CTTTGCATGGGTGTTGCTGTA 59.387 47.619 0.00 0.00 40.77 2.74
2816 3281 4.630111 TCCAACAAAACATCCAAATGAGC 58.370 39.130 0.00 0.00 36.67 4.26
2869 3334 3.421919 TTGGCAGAATGTGAGTCATCA 57.578 42.857 0.00 0.00 39.31 3.07
2871 3336 4.758773 TGGCAGAATGTGAGTCATCATA 57.241 40.909 0.00 0.00 37.87 2.15
2888 3353 8.446394 AGTCATCATATGGATTCTCCTTTCAAT 58.554 33.333 2.13 0.00 37.46 2.57
2949 3414 6.653020 ACATTGCATCCTACAGTCTGATTTA 58.347 36.000 6.91 0.00 0.00 1.40
3013 3479 1.079405 CATGGGGAAGCGTGTACGT 60.079 57.895 6.27 0.00 42.22 3.57
3117 3583 8.734386 AGATCTGTTTCACTGATACCAATTTTC 58.266 33.333 0.00 0.00 36.99 2.29
3208 3674 3.676646 GCAATGGAACTGCATTTTCTGTC 59.323 43.478 7.84 0.00 0.00 3.51
3273 3739 7.650903 CGATCTTGATTGTCATCTGAATGTAGA 59.349 37.037 0.00 0.00 34.32 2.59
3283 3749 9.166173 TGTCATCTGAATGTAGATTTTACTTGG 57.834 33.333 0.00 0.00 35.28 3.61
3391 3857 1.423921 ACCGGAGAAGTGGGATTTTGT 59.576 47.619 9.46 0.00 0.00 2.83
3401 3867 6.320418 AGAAGTGGGATTTTGTAAAAACGACT 59.680 34.615 0.00 1.67 33.13 4.18
3402 3868 5.827666 AGTGGGATTTTGTAAAAACGACTG 58.172 37.500 9.95 0.00 31.77 3.51
3405 3871 5.357314 TGGGATTTTGTAAAAACGACTGTCA 59.643 36.000 8.73 0.00 0.00 3.58
3407 3873 6.459161 GGGATTTTGTAAAAACGACTGTCAGT 60.459 38.462 4.81 4.81 0.00 3.41
3409 3875 7.585210 GGATTTTGTAAAAACGACTGTCAGTAC 59.415 37.037 5.21 0.00 0.00 2.73
3411 3877 8.700722 TTTTGTAAAAACGACTGTCAGTACTA 57.299 30.769 5.21 0.00 0.00 1.82
3412 3878 8.876275 TTTGTAAAAACGACTGTCAGTACTAT 57.124 30.769 5.21 0.00 0.00 2.12
3413 3879 9.964303 TTTGTAAAAACGACTGTCAGTACTATA 57.036 29.630 5.21 0.00 0.00 1.31
3458 4133 3.057946 GGTTGATGTGGTTCAGCTTCTTC 60.058 47.826 0.00 0.00 33.14 2.87
3492 4167 6.841755 AGCCAAATAGTCAGACCTTATACTCT 59.158 38.462 0.00 0.00 0.00 3.24
3498 4173 6.321821 AGTCAGACCTTATACTCTCTCTGT 57.678 41.667 0.00 0.00 0.00 3.41
3500 4175 6.826741 AGTCAGACCTTATACTCTCTCTGTTC 59.173 42.308 0.00 0.00 0.00 3.18
3502 4177 5.300792 CAGACCTTATACTCTCTCTGTTCCC 59.699 48.000 0.00 0.00 0.00 3.97
3503 4178 5.044030 AGACCTTATACTCTCTCTGTTCCCA 60.044 44.000 0.00 0.00 0.00 4.37
3504 4179 5.590818 ACCTTATACTCTCTCTGTTCCCAA 58.409 41.667 0.00 0.00 0.00 4.12
3506 4181 6.674419 ACCTTATACTCTCTCTGTTCCCAAAT 59.326 38.462 0.00 0.00 0.00 2.32
3507 4182 7.844779 ACCTTATACTCTCTCTGTTCCCAAATA 59.155 37.037 0.00 0.00 0.00 1.40
3508 4183 8.875168 CCTTATACTCTCTCTGTTCCCAAATAT 58.125 37.037 0.00 0.00 0.00 1.28
3512 4187 7.741554 ACTCTCTCTGTTCCCAAATATAAGT 57.258 36.000 0.00 0.00 0.00 2.24
3513 4188 7.787028 ACTCTCTCTGTTCCCAAATATAAGTC 58.213 38.462 0.00 0.00 0.00 3.01
3514 4189 7.621683 ACTCTCTCTGTTCCCAAATATAAGTCT 59.378 37.037 0.00 0.00 0.00 3.24
3515 4190 8.380742 TCTCTCTGTTCCCAAATATAAGTCTT 57.619 34.615 0.00 0.00 0.00 3.01
3516 4191 8.826765 TCTCTCTGTTCCCAAATATAAGTCTTT 58.173 33.333 0.00 0.00 0.00 2.52
3517 4192 9.103861 CTCTCTGTTCCCAAATATAAGTCTTTC 57.896 37.037 0.00 0.00 0.00 2.62
3518 4193 8.826765 TCTCTGTTCCCAAATATAAGTCTTTCT 58.173 33.333 0.00 0.00 0.00 2.52
3545 4220 9.803507 AGAGATTTCAATAAATGATATGGAGCA 57.196 29.630 0.00 0.00 38.03 4.26
3553 4228 9.069078 CAATAAATGATATGGAGCAAAATAGCG 57.931 33.333 0.00 0.00 40.15 4.26
3554 4229 6.882610 AAATGATATGGAGCAAAATAGCGA 57.117 33.333 0.00 0.00 40.15 4.93
3555 4230 6.882610 AATGATATGGAGCAAAATAGCGAA 57.117 33.333 0.00 0.00 40.15 4.70
3556 4231 7.458409 AATGATATGGAGCAAAATAGCGAAT 57.542 32.000 0.00 0.00 40.15 3.34
3557 4232 6.486253 TGATATGGAGCAAAATAGCGAATC 57.514 37.500 0.00 0.00 40.15 2.52
3558 4233 6.233434 TGATATGGAGCAAAATAGCGAATCT 58.767 36.000 0.00 0.00 40.15 2.40
3559 4234 7.386059 TGATATGGAGCAAAATAGCGAATCTA 58.614 34.615 0.00 0.00 40.15 1.98
3560 4235 5.931441 ATGGAGCAAAATAGCGAATCTAC 57.069 39.130 0.00 0.00 40.15 2.59
3561 4236 4.765273 TGGAGCAAAATAGCGAATCTACA 58.235 39.130 0.00 0.00 40.15 2.74
3562 4237 4.570772 TGGAGCAAAATAGCGAATCTACAC 59.429 41.667 0.00 0.00 40.15 2.90
3563 4238 4.811557 GGAGCAAAATAGCGAATCTACACT 59.188 41.667 0.00 0.00 40.15 3.55
3564 4239 5.294552 GGAGCAAAATAGCGAATCTACACTT 59.705 40.000 0.00 0.00 40.15 3.16
3565 4240 6.183360 GGAGCAAAATAGCGAATCTACACTTT 60.183 38.462 0.00 0.00 40.15 2.66
3566 4241 7.011109 GGAGCAAAATAGCGAATCTACACTTTA 59.989 37.037 0.00 0.00 40.15 1.85
3567 4242 8.263940 AGCAAAATAGCGAATCTACACTTTAA 57.736 30.769 0.00 0.00 40.15 1.52
3568 4243 8.726988 AGCAAAATAGCGAATCTACACTTTAAA 58.273 29.630 0.00 0.00 40.15 1.52
3569 4244 9.337091 GCAAAATAGCGAATCTACACTTTAAAA 57.663 29.630 0.00 0.00 0.00 1.52
3593 4268 9.890629 AAATATATCTACATGCATCCGTATGTT 57.109 29.630 0.00 0.00 44.98 2.71
3594 4269 8.877808 ATATATCTACATGCATCCGTATGTTG 57.122 34.615 0.00 0.85 44.98 3.33
3595 4270 4.400529 TCTACATGCATCCGTATGTTGT 57.599 40.909 0.00 0.00 44.98 3.32
3596 4271 5.523438 TCTACATGCATCCGTATGTTGTA 57.477 39.130 0.00 0.00 44.98 2.41
3597 4272 5.528870 TCTACATGCATCCGTATGTTGTAG 58.471 41.667 18.50 18.50 44.98 2.74
3598 4273 4.137116 ACATGCATCCGTATGTTGTAGT 57.863 40.909 0.00 0.00 44.98 2.73
3599 4274 4.119862 ACATGCATCCGTATGTTGTAGTC 58.880 43.478 0.00 0.00 44.98 2.59
3600 4275 3.173668 TGCATCCGTATGTTGTAGTCC 57.826 47.619 0.00 0.00 35.38 3.85
3601 4276 2.498078 TGCATCCGTATGTTGTAGTCCA 59.502 45.455 0.00 0.00 35.38 4.02
3602 4277 3.133901 TGCATCCGTATGTTGTAGTCCAT 59.866 43.478 0.00 0.00 35.38 3.41
3603 4278 4.127171 GCATCCGTATGTTGTAGTCCATT 58.873 43.478 0.00 0.00 35.38 3.16
3604 4279 4.574828 GCATCCGTATGTTGTAGTCCATTT 59.425 41.667 0.00 0.00 35.38 2.32
3605 4280 5.277345 GCATCCGTATGTTGTAGTCCATTTC 60.277 44.000 0.00 0.00 35.38 2.17
3606 4281 5.408880 TCCGTATGTTGTAGTCCATTTCA 57.591 39.130 0.00 0.00 0.00 2.69
3607 4282 5.795972 TCCGTATGTTGTAGTCCATTTCAA 58.204 37.500 0.00 0.00 0.00 2.69
3608 4283 6.231951 TCCGTATGTTGTAGTCCATTTCAAA 58.768 36.000 0.00 0.00 0.00 2.69
3609 4284 6.882140 TCCGTATGTTGTAGTCCATTTCAAAT 59.118 34.615 0.00 0.00 0.00 2.32
3610 4285 6.966632 CCGTATGTTGTAGTCCATTTCAAATG 59.033 38.462 2.80 2.80 0.00 2.32
3611 4286 7.361713 CCGTATGTTGTAGTCCATTTCAAATGT 60.362 37.037 9.31 0.00 0.00 2.71
3612 4287 7.692291 CGTATGTTGTAGTCCATTTCAAATGTC 59.308 37.037 9.31 2.44 0.00 3.06
3613 4288 7.765695 ATGTTGTAGTCCATTTCAAATGTCT 57.234 32.000 9.31 9.22 0.00 3.41
3614 4289 8.862325 ATGTTGTAGTCCATTTCAAATGTCTA 57.138 30.769 9.31 8.35 0.00 2.59
3615 4290 8.684386 TGTTGTAGTCCATTTCAAATGTCTAA 57.316 30.769 9.31 0.00 0.00 2.10
3616 4291 9.126151 TGTTGTAGTCCATTTCAAATGTCTAAA 57.874 29.630 9.31 4.37 0.00 1.85
3617 4292 9.959749 GTTGTAGTCCATTTCAAATGTCTAAAA 57.040 29.630 9.31 9.35 0.00 1.52
3622 4297 9.136323 AGTCCATTTCAAATGTCTAAAAAGACT 57.864 29.630 9.31 8.53 39.41 3.24
3623 4298 9.750125 GTCCATTTCAAATGTCTAAAAAGACTT 57.250 29.630 9.31 0.00 39.41 3.01
3635 4310 9.720769 TGTCTAAAAAGACTTATACTCCCTTTG 57.279 33.333 7.04 0.00 39.41 2.77
3636 4311 9.722184 GTCTAAAAAGACTTATACTCCCTTTGT 57.278 33.333 0.00 0.00 36.01 2.83
3639 4314 7.997773 AAAAGACTTATACTCCCTTTGTTCC 57.002 36.000 0.00 0.00 0.00 3.62
3640 4315 6.954352 AAGACTTATACTCCCTTTGTTCCT 57.046 37.500 0.00 0.00 0.00 3.36
3641 4316 8.445361 AAAGACTTATACTCCCTTTGTTCCTA 57.555 34.615 0.00 0.00 0.00 2.94
3642 4317 8.445361 AAGACTTATACTCCCTTTGTTCCTAA 57.555 34.615 0.00 0.00 0.00 2.69
3643 4318 8.445361 AGACTTATACTCCCTTTGTTCCTAAA 57.555 34.615 0.00 0.00 0.00 1.85
3644 4319 9.059023 AGACTTATACTCCCTTTGTTCCTAAAT 57.941 33.333 0.00 0.00 0.00 1.40
3650 4325 9.990868 ATACTCCCTTTGTTCCTAAATATTTGT 57.009 29.630 11.05 0.00 0.00 2.83
3651 4326 8.349568 ACTCCCTTTGTTCCTAAATATTTGTC 57.650 34.615 11.05 0.00 0.00 3.18
3652 4327 8.170730 ACTCCCTTTGTTCCTAAATATTTGTCT 58.829 33.333 11.05 0.00 0.00 3.41
3653 4328 8.950007 TCCCTTTGTTCCTAAATATTTGTCTT 57.050 30.769 11.05 0.00 0.00 3.01
3654 4329 9.374711 TCCCTTTGTTCCTAAATATTTGTCTTT 57.625 29.630 11.05 0.00 0.00 2.52
3655 4330 9.996554 CCCTTTGTTCCTAAATATTTGTCTTTT 57.003 29.630 11.05 0.00 0.00 2.27
3710 4385 9.739276 TTTGGAGTATAGATTCACTCATTTTGT 57.261 29.630 4.32 0.00 42.45 2.83
3711 4386 9.739276 TTGGAGTATAGATTCACTCATTTTGTT 57.261 29.630 4.32 0.00 42.45 2.83
3712 4387 9.383519 TGGAGTATAGATTCACTCATTTTGTTC 57.616 33.333 4.32 0.00 42.45 3.18
3713 4388 8.831550 GGAGTATAGATTCACTCATTTTGTTCC 58.168 37.037 4.32 0.00 42.45 3.62
3714 4389 8.738645 AGTATAGATTCACTCATTTTGTTCCC 57.261 34.615 0.00 0.00 0.00 3.97
3715 4390 8.552296 AGTATAGATTCACTCATTTTGTTCCCT 58.448 33.333 0.00 0.00 0.00 4.20
3716 4391 9.832445 GTATAGATTCACTCATTTTGTTCCCTA 57.168 33.333 0.00 0.00 0.00 3.53
3718 4393 7.636150 AGATTCACTCATTTTGTTCCCTATG 57.364 36.000 0.00 0.00 0.00 2.23
3719 4394 7.177878 AGATTCACTCATTTTGTTCCCTATGT 58.822 34.615 0.00 0.00 0.00 2.29
3720 4395 8.328758 AGATTCACTCATTTTGTTCCCTATGTA 58.671 33.333 0.00 0.00 0.00 2.29
3721 4396 7.921786 TTCACTCATTTTGTTCCCTATGTAG 57.078 36.000 0.00 0.00 0.00 2.74
3722 4397 7.016153 TCACTCATTTTGTTCCCTATGTAGT 57.984 36.000 0.00 0.00 0.00 2.73
3723 4398 7.458397 TCACTCATTTTGTTCCCTATGTAGTT 58.542 34.615 0.00 0.00 0.00 2.24
3724 4399 8.598916 TCACTCATTTTGTTCCCTATGTAGTTA 58.401 33.333 0.00 0.00 0.00 2.24
3725 4400 8.665685 CACTCATTTTGTTCCCTATGTAGTTAC 58.334 37.037 0.00 0.00 0.00 2.50
3726 4401 8.603304 ACTCATTTTGTTCCCTATGTAGTTACT 58.397 33.333 0.00 0.00 0.00 2.24
3727 4402 9.449719 CTCATTTTGTTCCCTATGTAGTTACTT 57.550 33.333 0.00 0.00 0.00 2.24
3728 4403 9.226606 TCATTTTGTTCCCTATGTAGTTACTTG 57.773 33.333 0.00 0.00 0.00 3.16
3729 4404 9.010029 CATTTTGTTCCCTATGTAGTTACTTGT 57.990 33.333 0.00 0.00 0.00 3.16
3730 4405 8.983702 TTTTGTTCCCTATGTAGTTACTTGTT 57.016 30.769 0.00 0.00 0.00 2.83
3731 4406 7.972832 TTGTTCCCTATGTAGTTACTTGTTG 57.027 36.000 0.00 0.00 0.00 3.33
3732 4407 7.305813 TGTTCCCTATGTAGTTACTTGTTGA 57.694 36.000 0.00 0.00 0.00 3.18
3733 4408 7.737869 TGTTCCCTATGTAGTTACTTGTTGAA 58.262 34.615 0.00 0.00 0.00 2.69
3734 4409 8.212312 TGTTCCCTATGTAGTTACTTGTTGAAA 58.788 33.333 0.00 0.00 0.00 2.69
3735 4410 9.227777 GTTCCCTATGTAGTTACTTGTTGAAAT 57.772 33.333 0.00 0.00 0.00 2.17
3766 4441 8.903820 AGAAAGATAAATATTTTGGAACGGAGG 58.096 33.333 5.91 0.00 0.00 4.30
3767 4442 7.582667 AAGATAAATATTTTGGAACGGAGGG 57.417 36.000 5.91 0.00 0.00 4.30
3768 4443 6.906848 AGATAAATATTTTGGAACGGAGGGA 58.093 36.000 5.91 0.00 0.00 4.20
3799 4474 4.438472 GCATGGTTCAGCTTCTTGAGAATC 60.438 45.833 0.00 0.00 33.01 2.52
3824 4499 5.283457 AGCCAAATAGTCAGACCTCATAC 57.717 43.478 0.00 0.00 0.00 2.39
3852 4543 5.696270 GCAAGCAAGGCAGTAAAATTAGTTT 59.304 36.000 0.00 0.00 0.00 2.66
3923 4619 0.845337 TCCATGGCATGCTGGTCATA 59.155 50.000 22.02 3.88 30.56 2.15
3924 4620 1.214923 TCCATGGCATGCTGGTCATAA 59.785 47.619 22.02 3.55 30.56 1.90
3934 4630 4.299586 TGCTGGTCATAAATGGTCTCAA 57.700 40.909 0.00 0.00 0.00 3.02
3935 4631 4.264253 TGCTGGTCATAAATGGTCTCAAG 58.736 43.478 0.00 0.00 0.00 3.02
3936 4632 3.065925 GCTGGTCATAAATGGTCTCAAGC 59.934 47.826 0.00 0.00 0.00 4.01
3937 4633 4.264253 CTGGTCATAAATGGTCTCAAGCA 58.736 43.478 0.00 0.00 37.29 3.91
3938 4634 4.264253 TGGTCATAAATGGTCTCAAGCAG 58.736 43.478 0.00 0.00 36.11 4.24
3939 4635 4.263462 TGGTCATAAATGGTCTCAAGCAGT 60.263 41.667 0.00 0.00 36.11 4.40
3940 4636 5.045942 TGGTCATAAATGGTCTCAAGCAGTA 60.046 40.000 0.00 0.00 36.11 2.74
3941 4637 5.525378 GGTCATAAATGGTCTCAAGCAGTAG 59.475 44.000 0.00 0.00 36.11 2.57
3942 4638 5.525378 GTCATAAATGGTCTCAAGCAGTAGG 59.475 44.000 0.00 0.00 36.11 3.18
3943 4639 3.356529 AAATGGTCTCAAGCAGTAGGG 57.643 47.619 0.00 0.00 36.11 3.53
3944 4640 2.254152 ATGGTCTCAAGCAGTAGGGA 57.746 50.000 0.00 0.00 36.11 4.20
3945 4641 2.024176 TGGTCTCAAGCAGTAGGGAA 57.976 50.000 0.00 0.00 0.00 3.97
3946 4642 1.623811 TGGTCTCAAGCAGTAGGGAAC 59.376 52.381 0.00 0.00 0.00 3.62
3947 4643 1.404315 GGTCTCAAGCAGTAGGGAACG 60.404 57.143 0.00 0.00 0.00 3.95
3948 4644 1.544691 GTCTCAAGCAGTAGGGAACGA 59.455 52.381 0.00 0.00 0.00 3.85
3949 4645 1.544691 TCTCAAGCAGTAGGGAACGAC 59.455 52.381 0.00 0.00 36.03 4.34
3950 4646 0.606604 TCAAGCAGTAGGGAACGACC 59.393 55.000 0.00 0.00 36.50 4.79
3951 4647 0.736325 CAAGCAGTAGGGAACGACCG 60.736 60.000 0.00 0.00 40.11 4.79
3952 4648 0.896940 AAGCAGTAGGGAACGACCGA 60.897 55.000 0.00 0.00 40.11 4.69
3953 4649 0.896940 AGCAGTAGGGAACGACCGAA 60.897 55.000 0.00 0.00 40.11 4.30
3954 4650 0.175073 GCAGTAGGGAACGACCGAAT 59.825 55.000 0.00 0.00 40.11 3.34
3955 4651 1.405121 GCAGTAGGGAACGACCGAATT 60.405 52.381 0.00 0.00 40.11 2.17
3956 4652 2.268298 CAGTAGGGAACGACCGAATTG 58.732 52.381 0.00 0.00 40.11 2.32
3957 4653 2.094390 CAGTAGGGAACGACCGAATTGA 60.094 50.000 0.00 0.00 40.11 2.57
3958 4654 2.094338 AGTAGGGAACGACCGAATTGAC 60.094 50.000 0.00 0.00 40.11 3.18
3959 4655 0.036671 AGGGAACGACCGAATTGACC 60.037 55.000 0.00 0.00 40.11 4.02
3960 4656 0.036671 GGGAACGACCGAATTGACCT 60.037 55.000 0.00 0.00 40.11 3.85
3961 4657 1.205417 GGGAACGACCGAATTGACCTA 59.795 52.381 0.00 0.00 40.11 3.08
3962 4658 2.159000 GGGAACGACCGAATTGACCTAT 60.159 50.000 0.00 0.00 40.11 2.57
3963 4659 3.121544 GGAACGACCGAATTGACCTATC 58.878 50.000 0.00 0.00 0.00 2.08
3964 4660 2.884894 ACGACCGAATTGACCTATCC 57.115 50.000 0.00 0.00 0.00 2.59
3965 4661 2.385803 ACGACCGAATTGACCTATCCT 58.614 47.619 0.00 0.00 0.00 3.24
3966 4662 3.559069 ACGACCGAATTGACCTATCCTA 58.441 45.455 0.00 0.00 0.00 2.94
3967 4663 3.956199 ACGACCGAATTGACCTATCCTAA 59.044 43.478 0.00 0.00 0.00 2.69
3968 4664 4.202090 ACGACCGAATTGACCTATCCTAAC 60.202 45.833 0.00 0.00 0.00 2.34
3969 4665 4.296690 GACCGAATTGACCTATCCTAACG 58.703 47.826 0.00 0.00 0.00 3.18
3970 4666 3.703052 ACCGAATTGACCTATCCTAACGT 59.297 43.478 0.00 0.00 0.00 3.99
3971 4667 4.049186 CCGAATTGACCTATCCTAACGTG 58.951 47.826 0.00 0.00 0.00 4.49
3972 4668 4.202080 CCGAATTGACCTATCCTAACGTGA 60.202 45.833 0.00 0.00 0.00 4.35
3973 4669 4.976731 CGAATTGACCTATCCTAACGTGAG 59.023 45.833 0.00 0.00 0.00 3.51
3974 4670 5.220989 CGAATTGACCTATCCTAACGTGAGA 60.221 44.000 0.00 0.00 0.00 3.27
3975 4671 5.776173 ATTGACCTATCCTAACGTGAGAG 57.224 43.478 0.00 0.00 0.00 3.20
3976 4672 4.498894 TGACCTATCCTAACGTGAGAGA 57.501 45.455 0.00 0.00 0.00 3.10
3977 4673 4.197750 TGACCTATCCTAACGTGAGAGAC 58.802 47.826 0.00 0.00 0.00 3.36
3987 4683 1.587054 GTGAGAGACGACTGGGTGG 59.413 63.158 0.00 0.00 0.00 4.61
3988 4684 2.276116 TGAGAGACGACTGGGTGGC 61.276 63.158 0.00 0.00 0.00 5.01
3989 4685 1.979693 GAGAGACGACTGGGTGGCT 60.980 63.158 0.00 0.00 0.00 4.75
3990 4686 1.939769 GAGAGACGACTGGGTGGCTC 61.940 65.000 0.00 0.00 0.00 4.70
3991 4687 2.203640 AGACGACTGGGTGGCTCA 60.204 61.111 0.00 0.00 0.00 4.26
3992 4688 1.608717 GAGACGACTGGGTGGCTCAT 61.609 60.000 0.00 0.00 0.00 2.90
3993 4689 0.324368 AGACGACTGGGTGGCTCATA 60.324 55.000 0.00 0.00 0.00 2.15
3994 4690 0.535335 GACGACTGGGTGGCTCATAA 59.465 55.000 0.00 0.00 0.00 1.90
3995 4691 0.249398 ACGACTGGGTGGCTCATAAC 59.751 55.000 0.00 0.00 0.00 1.89
3996 4692 0.462047 CGACTGGGTGGCTCATAACC 60.462 60.000 0.00 0.00 35.59 2.85
4013 4709 4.232905 CCCCCTTCTCCAGTCACA 57.767 61.111 0.00 0.00 0.00 3.58
4014 4710 2.702093 CCCCCTTCTCCAGTCACAT 58.298 57.895 0.00 0.00 0.00 3.21
4015 4711 0.543749 CCCCCTTCTCCAGTCACATC 59.456 60.000 0.00 0.00 0.00 3.06
4016 4712 1.577736 CCCCTTCTCCAGTCACATCT 58.422 55.000 0.00 0.00 0.00 2.90
4017 4713 1.484240 CCCCTTCTCCAGTCACATCTC 59.516 57.143 0.00 0.00 0.00 2.75
4018 4714 1.135915 CCCTTCTCCAGTCACATCTCG 59.864 57.143 0.00 0.00 0.00 4.04
4019 4715 1.821753 CCTTCTCCAGTCACATCTCGT 59.178 52.381 0.00 0.00 0.00 4.18
4021 4717 0.528017 TCTCCAGTCACATCTCGTGC 59.472 55.000 0.00 0.00 45.92 5.34
4022 4718 0.459237 CTCCAGTCACATCTCGTGCC 60.459 60.000 0.00 0.00 45.92 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.989416 ATTGCAAAAGTTTCAAATCCATGAT 57.011 28.000 1.71 0.00 0.00 2.45
46 47 9.798994 TTTCATCCATTTTGTTTTGGAAAATTG 57.201 25.926 0.00 0.00 44.83 2.32
107 108 5.047377 AGTTTTTGCTTTCTCAGGTTTGTGA 60.047 36.000 0.00 0.00 0.00 3.58
116 120 3.569701 CCAGGCTAGTTTTTGCTTTCTCA 59.430 43.478 0.00 0.00 0.00 3.27
131 135 0.323629 CACTCCGGTTTTCCAGGCTA 59.676 55.000 0.00 0.00 40.70 3.93
137 153 5.163652 CCATTTTATCTCACTCCGGTTTTCC 60.164 44.000 0.00 0.00 0.00 3.13
149 165 3.136443 AGACCATCGCCCATTTTATCTCA 59.864 43.478 0.00 0.00 0.00 3.27
157 173 1.139058 GTCACTAGACCATCGCCCATT 59.861 52.381 0.00 0.00 38.89 3.16
171 187 5.045869 CCATTTCCTCCCTAGTTTGTCACTA 60.046 44.000 0.00 0.00 36.88 2.74
180 196 0.994050 GGGGCCATTTCCTCCCTAGT 60.994 60.000 4.39 0.00 39.95 2.57
198 214 4.463788 GGGGAATGGGTGCAGGGG 62.464 72.222 0.00 0.00 0.00 4.79
208 224 1.405105 CACGCCAATTACAGGGGAATG 59.595 52.381 4.59 0.00 41.25 2.67
212 228 0.322098 TCACACGCCAATTACAGGGG 60.322 55.000 0.00 0.00 44.04 4.79
283 299 0.590195 CAGTGCCTGCTTGACTGTTC 59.410 55.000 0.00 0.00 33.77 3.18
301 317 4.080356 GGTGAATATATAGCTGGATGGCCA 60.080 45.833 8.56 8.56 43.47 5.36
303 319 5.365021 AGGTGAATATATAGCTGGATGGC 57.635 43.478 0.00 0.00 0.00 4.40
333 349 4.541705 TCTCTCTCTATTGGACAAGGAGG 58.458 47.826 13.75 8.01 0.00 4.30
347 363 4.325344 CCCTCCTTTCTCTCTTCTCTCTCT 60.325 50.000 0.00 0.00 0.00 3.10
420 436 0.468226 TTTGAGGGAGTTCGCACACT 59.532 50.000 0.00 0.00 0.00 3.55
425 443 1.157585 GAAGGTTTGAGGGAGTTCGC 58.842 55.000 0.00 0.00 0.00 4.70
427 445 1.705745 AGGGAAGGTTTGAGGGAGTTC 59.294 52.381 0.00 0.00 0.00 3.01
480 498 7.685481 ACCATTCGATGATATATTTGGTGGTA 58.315 34.615 0.00 0.00 35.03 3.25
617 635 1.885163 GATCGTACCTATGGGCCGGG 61.885 65.000 2.18 3.53 35.63 5.73
693 711 3.544167 CTAGCGCCTCGGATGGACG 62.544 68.421 2.29 0.00 0.00 4.79
822 840 0.179174 CTTACGGATTTTGGCGTGGC 60.179 55.000 0.00 0.00 0.00 5.01
824 842 1.129811 GGACTTACGGATTTTGGCGTG 59.870 52.381 0.00 0.00 0.00 5.34
825 843 1.002773 AGGACTTACGGATTTTGGCGT 59.997 47.619 0.00 0.00 0.00 5.68
1051 1079 1.668751 GCTGGACACAGTCGTGAAAAA 59.331 47.619 0.00 0.00 46.80 1.94
1130 1158 3.897657 AGGAACGGAGGGAGTATATCA 57.102 47.619 0.00 0.00 0.00 2.15
1135 1163 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
1136 1164 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
1137 1165 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
1138 1166 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
1139 1167 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
1140 1168 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
1141 1169 6.649557 ACAAAGACTTACATTTAGGAACGGAG 59.350 38.462 0.00 0.00 0.00 4.63
1142 1170 6.527423 ACAAAGACTTACATTTAGGAACGGA 58.473 36.000 0.00 0.00 0.00 4.69
1143 1171 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
1144 1172 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
1145 1173 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
1160 1188 9.582431 CGGTTTATAGTGAAATCTCTACAAAGA 57.418 33.333 0.00 0.00 0.00 2.52
1161 1189 8.328864 GCGGTTTATAGTGAAATCTCTACAAAG 58.671 37.037 0.00 0.00 0.00 2.77
1162 1190 7.820386 TGCGGTTTATAGTGAAATCTCTACAAA 59.180 33.333 0.00 0.00 0.00 2.83
1163 1191 7.324935 TGCGGTTTATAGTGAAATCTCTACAA 58.675 34.615 0.00 0.00 0.00 2.41
1164 1192 6.869695 TGCGGTTTATAGTGAAATCTCTACA 58.130 36.000 0.00 0.00 0.00 2.74
1165 1193 7.948278 ATGCGGTTTATAGTGAAATCTCTAC 57.052 36.000 0.00 0.00 0.00 2.59
1166 1194 7.806487 CGTATGCGGTTTATAGTGAAATCTCTA 59.194 37.037 0.00 0.00 0.00 2.43
1167 1195 6.641314 CGTATGCGGTTTATAGTGAAATCTCT 59.359 38.462 0.00 0.00 0.00 3.10
1168 1196 6.808264 CGTATGCGGTTTATAGTGAAATCTC 58.192 40.000 0.00 0.00 0.00 2.75
1169 1197 6.764877 CGTATGCGGTTTATAGTGAAATCT 57.235 37.500 0.00 0.00 0.00 2.40
1185 1213 5.519722 TGCATCTATATACATCCGTATGCG 58.480 41.667 0.00 0.00 38.79 4.73
1186 1214 7.953158 AATGCATCTATATACATCCGTATGC 57.047 36.000 0.00 0.00 38.79 3.14
1190 1218 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
1213 1241 8.587608 TGGAGCAAAATGAATGAATCTAAACTT 58.412 29.630 0.00 0.00 0.00 2.66
1214 1242 8.125978 TGGAGCAAAATGAATGAATCTAAACT 57.874 30.769 0.00 0.00 0.00 2.66
1215 1243 8.937634 ATGGAGCAAAATGAATGAATCTAAAC 57.062 30.769 0.00 0.00 0.00 2.01
1223 1251 9.453572 GGACTATATATGGAGCAAAATGAATGA 57.546 33.333 2.68 0.00 0.00 2.57
1224 1252 9.234827 TGGACTATATATGGAGCAAAATGAATG 57.765 33.333 2.68 0.00 0.00 2.67
1225 1253 9.236006 GTGGACTATATATGGAGCAAAATGAAT 57.764 33.333 2.68 0.00 0.00 2.57
1226 1254 7.665559 GGTGGACTATATATGGAGCAAAATGAA 59.334 37.037 2.68 0.00 0.00 2.57
1227 1255 7.017551 AGGTGGACTATATATGGAGCAAAATGA 59.982 37.037 2.68 0.00 0.00 2.57
1228 1256 7.170965 AGGTGGACTATATATGGAGCAAAATG 58.829 38.462 2.68 0.00 0.00 2.32
1229 1257 7.335127 AGGTGGACTATATATGGAGCAAAAT 57.665 36.000 2.68 0.00 0.00 1.82
1230 1258 6.763715 AGGTGGACTATATATGGAGCAAAA 57.236 37.500 2.68 0.00 0.00 2.44
1231 1259 7.016914 ACTAGGTGGACTATATATGGAGCAAA 58.983 38.462 2.68 0.00 0.00 3.68
1232 1260 6.437477 CACTAGGTGGACTATATATGGAGCAA 59.563 42.308 2.68 0.00 0.00 3.91
1233 1261 5.952347 CACTAGGTGGACTATATATGGAGCA 59.048 44.000 2.68 0.00 0.00 4.26
1234 1262 6.458232 CACTAGGTGGACTATATATGGAGC 57.542 45.833 2.68 0.00 0.00 4.70
1249 1277 6.153680 AGTCTTTGTAGAGATTCCACTAGGTG 59.846 42.308 0.00 0.00 35.89 4.00
1250 1278 6.257586 AGTCTTTGTAGAGATTCCACTAGGT 58.742 40.000 0.00 0.00 35.89 3.08
1251 1279 6.783708 AGTCTTTGTAGAGATTCCACTAGG 57.216 41.667 0.00 0.00 0.00 3.02
1266 1294 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
1267 1295 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
1268 1296 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1269 1297 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1270 1298 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1271 1299 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1272 1300 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1273 1301 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1274 1302 7.731688 ACATACTCCCTCCGTTCCTAAATATAA 59.268 37.037 0.00 0.00 0.00 0.98
1275 1303 7.243824 ACATACTCCCTCCGTTCCTAAATATA 58.756 38.462 0.00 0.00 0.00 0.86
1276 1304 6.082707 ACATACTCCCTCCGTTCCTAAATAT 58.917 40.000 0.00 0.00 0.00 1.28
1277 1305 5.461327 ACATACTCCCTCCGTTCCTAAATA 58.539 41.667 0.00 0.00 0.00 1.40
1278 1306 4.296056 ACATACTCCCTCCGTTCCTAAAT 58.704 43.478 0.00 0.00 0.00 1.40
1279 1307 3.703052 GACATACTCCCTCCGTTCCTAAA 59.297 47.826 0.00 0.00 0.00 1.85
1280 1308 3.294214 GACATACTCCCTCCGTTCCTAA 58.706 50.000 0.00 0.00 0.00 2.69
1281 1309 2.242965 TGACATACTCCCTCCGTTCCTA 59.757 50.000 0.00 0.00 0.00 2.94
1282 1310 1.006758 TGACATACTCCCTCCGTTCCT 59.993 52.381 0.00 0.00 0.00 3.36
1283 1311 1.481871 TGACATACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
1284 1312 3.821421 AATGACATACTCCCTCCGTTC 57.179 47.619 0.00 0.00 0.00 3.95
1285 1313 3.873910 CAAATGACATACTCCCTCCGTT 58.126 45.455 0.00 0.00 0.00 4.44
1286 1314 2.420129 GCAAATGACATACTCCCTCCGT 60.420 50.000 0.00 0.00 0.00 4.69
1287 1315 2.213499 GCAAATGACATACTCCCTCCG 58.787 52.381 0.00 0.00 0.00 4.63
1288 1316 3.281727 TGCAAATGACATACTCCCTCC 57.718 47.619 0.00 0.00 0.00 4.30
1289 1317 4.202441 ACATGCAAATGACATACTCCCTC 58.798 43.478 0.00 0.00 0.00 4.30
1290 1318 4.202441 GACATGCAAATGACATACTCCCT 58.798 43.478 0.00 0.00 0.00 4.20
1291 1319 3.947196 TGACATGCAAATGACATACTCCC 59.053 43.478 0.00 0.00 0.00 4.30
1292 1320 5.762825 ATGACATGCAAATGACATACTCC 57.237 39.130 3.87 0.00 35.74 3.85
1293 1321 6.471198 CACAATGACATGCAAATGACATACTC 59.529 38.462 5.84 0.00 36.29 2.59
1294 1322 6.327154 CACAATGACATGCAAATGACATACT 58.673 36.000 5.84 0.00 36.29 2.12
1295 1323 5.005012 GCACAATGACATGCAAATGACATAC 59.995 40.000 5.84 0.00 41.65 2.39
1314 1342 5.104569 TCCATGAGTATATCCAACAGCACAA 60.105 40.000 0.00 0.00 0.00 3.33
1330 1358 9.265901 CAAGATATTTAACTCGATTCCATGAGT 57.734 33.333 0.00 0.00 46.98 3.41
1331 1359 9.265901 ACAAGATATTTAACTCGATTCCATGAG 57.734 33.333 0.00 0.00 38.21 2.90
1368 1396 3.997021 AGCTCACATCTTTAACGGACAAG 59.003 43.478 0.00 0.00 0.00 3.16
1440 1468 9.672086 TTAACCACTTAAGAAACAATTGAATCG 57.328 29.630 13.59 0.29 0.00 3.34
1467 1495 5.724328 TCAATCTCTCTCGCACAATTAACT 58.276 37.500 0.00 0.00 0.00 2.24
1468 1496 6.595772 ATCAATCTCTCTCGCACAATTAAC 57.404 37.500 0.00 0.00 0.00 2.01
1470 1498 8.716646 TTAAATCAATCTCTCTCGCACAATTA 57.283 30.769 0.00 0.00 0.00 1.40
1471 1499 7.615582 TTAAATCAATCTCTCTCGCACAATT 57.384 32.000 0.00 0.00 0.00 2.32
1589 1620 7.489113 CAGAAAACATGGGCAACATTAGAATAC 59.511 37.037 0.00 0.00 37.84 1.89
1825 1856 1.746220 CGTTTGTCCTTTTGTGGGTCA 59.254 47.619 0.00 0.00 0.00 4.02
1951 1982 9.991388 TTGAGTTAATACAAAACTTACACACAC 57.009 29.630 0.00 0.00 37.31 3.82
1986 2446 8.140677 TGTCAAAACATAAGCATTTCAAAAGG 57.859 30.769 0.00 0.00 0.00 3.11
2017 2477 3.425577 AATTGATACATGCAAGGCACG 57.574 42.857 0.00 0.00 43.04 5.34
2026 2486 7.643528 ATGTCACTAGCGTAATTGATACATG 57.356 36.000 0.00 0.00 33.89 3.21
2041 2501 7.979444 TCTTGGGTTAAAGAAATGTCACTAG 57.021 36.000 0.00 0.00 33.25 2.57
2366 2828 9.225436 TCATGTAAACAGTAATAGCATGAAACA 57.775 29.630 0.00 0.00 38.44 2.83
2402 2864 4.225942 AGATGCAGAGGAATCTACAACCAA 59.774 41.667 0.00 0.00 37.66 3.67
2414 2876 2.842496 ACCAATCAGAAGATGCAGAGGA 59.158 45.455 0.00 0.00 33.90 3.71
2470 2935 6.865205 AGTCTAATTGCTTTTTCTGCACAATC 59.135 34.615 0.00 0.00 40.40 2.67
2502 2967 8.748412 AGCAACAACATAAAATATCTAGGCAAA 58.252 29.630 0.00 0.00 0.00 3.68
2541 3006 8.237811 TCACAGAGAGAACATAGCAATATACA 57.762 34.615 0.00 0.00 0.00 2.29
2583 3048 1.068474 CGCATGGTATTAGTAGCGCC 58.932 55.000 2.29 0.00 38.68 6.53
2585 3050 1.068474 GCCGCATGGTATTAGTAGCG 58.932 55.000 0.00 0.00 44.24 4.26
2590 3055 0.870393 CTGCTGCCGCATGGTATTAG 59.130 55.000 2.34 0.00 46.74 1.73
2646 3111 2.202395 TGGGAAACTTGCCTGCAGC 61.202 57.895 8.66 4.57 39.72 5.25
2765 3230 0.670546 CGTCCATCGACAAGTTGCCT 60.671 55.000 1.81 0.00 42.86 4.75
2816 3281 1.202651 AGGGACACAAGGAAGTTGACG 60.203 52.381 0.00 0.00 38.60 4.35
2892 3357 8.962679 AGTTAAACAACCAGAAACATAAGACAA 58.037 29.630 0.00 0.00 0.00 3.18
2904 3369 4.642437 TGTCATGCAAGTTAAACAACCAGA 59.358 37.500 0.00 0.00 0.00 3.86
2949 3414 3.324556 CACCTGGGGAACACAAATCATTT 59.675 43.478 0.00 0.00 0.00 2.32
3013 3479 0.934496 GCGCACACACTTAGAACACA 59.066 50.000 0.30 0.00 0.00 3.72
3117 3583 5.163764 TGTTGATATTCGCTTAGGCAAACAG 60.164 40.000 0.00 0.00 38.60 3.16
3208 3674 0.806868 AGGCACAACGCAGAATCATG 59.193 50.000 0.00 0.00 45.17 3.07
3286 3752 9.620660 CCATTTAAACACACTTATAGGAAACAC 57.379 33.333 0.00 0.00 0.00 3.32
3373 3839 5.699097 TTTTACAAAATCCCACTTCTCCG 57.301 39.130 0.00 0.00 0.00 4.63
3391 3857 8.464404 AGCATATAGTACTGACAGTCGTTTTTA 58.536 33.333 12.39 0.00 0.00 1.52
3401 3867 9.461312 AAAATCCAAAAGCATATAGTACTGACA 57.539 29.630 5.39 0.00 0.00 3.58
3402 3868 9.937175 GAAAATCCAAAAGCATATAGTACTGAC 57.063 33.333 5.39 0.00 0.00 3.51
3405 3871 9.686683 ACTGAAAATCCAAAAGCATATAGTACT 57.313 29.630 0.00 0.00 0.00 2.73
3407 3873 9.679661 TCACTGAAAATCCAAAAGCATATAGTA 57.320 29.630 0.00 0.00 0.00 1.82
3409 3875 9.674824 GATCACTGAAAATCCAAAAGCATATAG 57.325 33.333 0.00 0.00 0.00 1.31
3411 3877 7.198390 CGATCACTGAAAATCCAAAAGCATAT 58.802 34.615 0.00 0.00 0.00 1.78
3412 3878 6.404623 CCGATCACTGAAAATCCAAAAGCATA 60.405 38.462 0.00 0.00 0.00 3.14
3413 3879 5.404946 CGATCACTGAAAATCCAAAAGCAT 58.595 37.500 0.00 0.00 0.00 3.79
3458 4133 5.065731 GTCTGACTATTTGGCTTGGATTCTG 59.934 44.000 0.00 0.00 0.00 3.02
3492 4167 8.826765 AGAAAGACTTATATTTGGGAACAGAGA 58.173 33.333 0.00 0.00 44.54 3.10
3527 4202 9.069078 CGCTATTTTGCTCCATATCATTTATTG 57.931 33.333 0.00 0.00 0.00 1.90
3528 4203 9.013229 TCGCTATTTTGCTCCATATCATTTATT 57.987 29.630 0.00 0.00 0.00 1.40
3529 4204 8.565896 TCGCTATTTTGCTCCATATCATTTAT 57.434 30.769 0.00 0.00 0.00 1.40
3531 4206 6.882610 TCGCTATTTTGCTCCATATCATTT 57.117 33.333 0.00 0.00 0.00 2.32
3532 4207 6.882610 TTCGCTATTTTGCTCCATATCATT 57.117 33.333 0.00 0.00 0.00 2.57
3533 4208 6.883217 AGATTCGCTATTTTGCTCCATATCAT 59.117 34.615 0.00 0.00 0.00 2.45
3534 4209 6.233434 AGATTCGCTATTTTGCTCCATATCA 58.767 36.000 0.00 0.00 0.00 2.15
3535 4210 6.734104 AGATTCGCTATTTTGCTCCATATC 57.266 37.500 0.00 0.00 0.00 1.63
3536 4211 7.118390 GTGTAGATTCGCTATTTTGCTCCATAT 59.882 37.037 0.00 0.00 0.00 1.78
3537 4212 6.423905 GTGTAGATTCGCTATTTTGCTCCATA 59.576 38.462 0.00 0.00 0.00 2.74
3538 4213 5.237344 GTGTAGATTCGCTATTTTGCTCCAT 59.763 40.000 0.00 0.00 0.00 3.41
3539 4214 4.570772 GTGTAGATTCGCTATTTTGCTCCA 59.429 41.667 0.00 0.00 0.00 3.86
3540 4215 4.811557 AGTGTAGATTCGCTATTTTGCTCC 59.188 41.667 0.00 0.00 0.00 4.70
3541 4216 5.975410 AGTGTAGATTCGCTATTTTGCTC 57.025 39.130 0.00 0.00 0.00 4.26
3542 4217 6.743575 AAAGTGTAGATTCGCTATTTTGCT 57.256 33.333 0.00 0.00 0.00 3.91
3543 4218 8.889849 TTTAAAGTGTAGATTCGCTATTTTGC 57.110 30.769 0.00 0.00 0.00 3.68
3566 4241 9.890629 ACATACGGATGCATGTAGATATATTTT 57.109 29.630 7.78 0.00 36.43 1.82
3567 4242 9.890629 AACATACGGATGCATGTAGATATATTT 57.109 29.630 7.78 0.00 36.43 1.40
3568 4243 9.317936 CAACATACGGATGCATGTAGATATATT 57.682 33.333 7.78 0.00 36.43 1.28
3569 4244 8.478066 ACAACATACGGATGCATGTAGATATAT 58.522 33.333 15.89 0.00 35.66 0.86
3570 4245 7.836842 ACAACATACGGATGCATGTAGATATA 58.163 34.615 15.89 0.00 35.66 0.86
3571 4246 6.701340 ACAACATACGGATGCATGTAGATAT 58.299 36.000 15.89 0.00 35.66 1.63
3572 4247 6.096673 ACAACATACGGATGCATGTAGATA 57.903 37.500 15.89 0.00 35.66 1.98
3573 4248 4.960938 ACAACATACGGATGCATGTAGAT 58.039 39.130 15.89 0.00 35.66 1.98
3574 4249 4.400529 ACAACATACGGATGCATGTAGA 57.599 40.909 15.89 0.00 35.66 2.59
3575 4250 5.829233 CTACAACATACGGATGCATGTAG 57.171 43.478 26.90 26.90 43.29 2.74
3576 4251 5.270893 ACTACAACATACGGATGCATGTA 57.729 39.130 19.97 19.97 37.51 2.29
3577 4252 4.119862 GACTACAACATACGGATGCATGT 58.880 43.478 19.89 19.89 38.92 3.21
3578 4253 3.494626 GGACTACAACATACGGATGCATG 59.505 47.826 7.78 9.99 36.43 4.06
3579 4254 3.133901 TGGACTACAACATACGGATGCAT 59.866 43.478 7.78 0.00 36.43 3.96
3580 4255 2.498078 TGGACTACAACATACGGATGCA 59.502 45.455 7.78 0.00 36.43 3.96
3581 4256 3.173668 TGGACTACAACATACGGATGC 57.826 47.619 7.78 0.00 36.43 3.91
3582 4257 5.815222 TGAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
3583 4258 5.984725 TGAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
3584 4259 5.408880 TGAAATGGACTACAACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
3585 4260 6.489127 TTTGAAATGGACTACAACATACGG 57.511 37.500 0.00 0.00 0.00 4.02
3586 4261 7.526608 ACATTTGAAATGGACTACAACATACG 58.473 34.615 20.69 0.00 0.00 3.06
3587 4262 8.730680 AGACATTTGAAATGGACTACAACATAC 58.269 33.333 20.69 0.00 0.00 2.39
3588 4263 8.862325 AGACATTTGAAATGGACTACAACATA 57.138 30.769 20.69 0.00 0.00 2.29
3589 4264 7.765695 AGACATTTGAAATGGACTACAACAT 57.234 32.000 20.69 0.00 0.00 2.71
3590 4265 8.684386 TTAGACATTTGAAATGGACTACAACA 57.316 30.769 20.69 7.35 0.00 3.33
3591 4266 9.959749 TTTTAGACATTTGAAATGGACTACAAC 57.040 29.630 20.69 3.63 0.00 3.32
3596 4271 9.136323 AGTCTTTTTAGACATTTGAAATGGACT 57.864 29.630 20.69 19.24 41.02 3.85
3597 4272 9.750125 AAGTCTTTTTAGACATTTGAAATGGAC 57.250 29.630 20.69 14.60 41.02 4.02
3609 4284 9.720769 CAAAGGGAGTATAAGTCTTTTTAGACA 57.279 33.333 7.92 0.00 41.02 3.41
3610 4285 9.722184 ACAAAGGGAGTATAAGTCTTTTTAGAC 57.278 33.333 0.00 0.00 39.00 2.59
3613 4288 9.511272 GGAACAAAGGGAGTATAAGTCTTTTTA 57.489 33.333 0.00 0.00 0.00 1.52
3614 4289 8.225416 AGGAACAAAGGGAGTATAAGTCTTTTT 58.775 33.333 0.00 0.00 0.00 1.94
3615 4290 7.756614 AGGAACAAAGGGAGTATAAGTCTTTT 58.243 34.615 0.00 0.00 0.00 2.27
3616 4291 7.331089 AGGAACAAAGGGAGTATAAGTCTTT 57.669 36.000 0.00 0.00 0.00 2.52
3617 4292 6.954352 AGGAACAAAGGGAGTATAAGTCTT 57.046 37.500 0.00 0.00 0.00 3.01
3618 4293 8.445361 TTTAGGAACAAAGGGAGTATAAGTCT 57.555 34.615 0.00 0.00 0.00 3.24
3624 4299 9.990868 ACAAATATTTAGGAACAAAGGGAGTAT 57.009 29.630 0.00 0.00 0.00 2.12
3625 4300 9.457436 GACAAATATTTAGGAACAAAGGGAGTA 57.543 33.333 0.00 0.00 0.00 2.59
3626 4301 8.170730 AGACAAATATTTAGGAACAAAGGGAGT 58.829 33.333 0.00 0.00 0.00 3.85
3627 4302 8.581253 AGACAAATATTTAGGAACAAAGGGAG 57.419 34.615 0.00 0.00 0.00 4.30
3628 4303 8.950007 AAGACAAATATTTAGGAACAAAGGGA 57.050 30.769 0.00 0.00 0.00 4.20
3629 4304 9.996554 AAAAGACAAATATTTAGGAACAAAGGG 57.003 29.630 0.00 0.00 0.00 3.95
3684 4359 9.739276 ACAAAATGAGTGAATCTATACTCCAAA 57.261 29.630 0.00 0.00 41.99 3.28
3685 4360 9.739276 AACAAAATGAGTGAATCTATACTCCAA 57.261 29.630 0.00 0.00 41.99 3.53
3686 4361 9.383519 GAACAAAATGAGTGAATCTATACTCCA 57.616 33.333 0.00 0.00 41.99 3.86
3687 4362 8.831550 GGAACAAAATGAGTGAATCTATACTCC 58.168 37.037 0.00 0.00 41.99 3.85
3688 4363 8.831550 GGGAACAAAATGAGTGAATCTATACTC 58.168 37.037 0.00 0.00 42.77 2.59
3689 4364 8.552296 AGGGAACAAAATGAGTGAATCTATACT 58.448 33.333 0.00 0.00 0.00 2.12
3690 4365 8.738645 AGGGAACAAAATGAGTGAATCTATAC 57.261 34.615 0.00 0.00 0.00 1.47
3692 4367 9.347240 CATAGGGAACAAAATGAGTGAATCTAT 57.653 33.333 0.00 0.00 0.00 1.98
3693 4368 8.328758 ACATAGGGAACAAAATGAGTGAATCTA 58.671 33.333 0.00 0.00 0.00 1.98
3694 4369 7.177878 ACATAGGGAACAAAATGAGTGAATCT 58.822 34.615 0.00 0.00 0.00 2.40
3695 4370 7.396540 ACATAGGGAACAAAATGAGTGAATC 57.603 36.000 0.00 0.00 0.00 2.52
3696 4371 8.109634 ACTACATAGGGAACAAAATGAGTGAAT 58.890 33.333 0.00 0.00 0.00 2.57
3697 4372 7.458397 ACTACATAGGGAACAAAATGAGTGAA 58.542 34.615 0.00 0.00 0.00 3.18
3698 4373 7.016153 ACTACATAGGGAACAAAATGAGTGA 57.984 36.000 0.00 0.00 0.00 3.41
3699 4374 7.687941 AACTACATAGGGAACAAAATGAGTG 57.312 36.000 0.00 0.00 0.00 3.51
3700 4375 8.603304 AGTAACTACATAGGGAACAAAATGAGT 58.397 33.333 0.00 0.00 0.00 3.41
3701 4376 9.449719 AAGTAACTACATAGGGAACAAAATGAG 57.550 33.333 0.00 0.00 0.00 2.90
3702 4377 9.226606 CAAGTAACTACATAGGGAACAAAATGA 57.773 33.333 0.00 0.00 0.00 2.57
3703 4378 9.010029 ACAAGTAACTACATAGGGAACAAAATG 57.990 33.333 0.00 0.00 0.00 2.32
3704 4379 9.582648 AACAAGTAACTACATAGGGAACAAAAT 57.417 29.630 0.00 0.00 0.00 1.82
3705 4380 8.842280 CAACAAGTAACTACATAGGGAACAAAA 58.158 33.333 0.00 0.00 0.00 2.44
3706 4381 8.212312 TCAACAAGTAACTACATAGGGAACAAA 58.788 33.333 0.00 0.00 0.00 2.83
3707 4382 7.737869 TCAACAAGTAACTACATAGGGAACAA 58.262 34.615 0.00 0.00 0.00 2.83
3708 4383 7.305813 TCAACAAGTAACTACATAGGGAACA 57.694 36.000 0.00 0.00 0.00 3.18
3709 4384 8.611654 TTTCAACAAGTAACTACATAGGGAAC 57.388 34.615 0.00 0.00 0.00 3.62
3740 4415 8.903820 CCTCCGTTCCAAAATATTTATCTTTCT 58.096 33.333 0.01 0.00 0.00 2.52
3741 4416 8.135529 CCCTCCGTTCCAAAATATTTATCTTTC 58.864 37.037 0.01 0.00 0.00 2.62
3742 4417 7.837187 TCCCTCCGTTCCAAAATATTTATCTTT 59.163 33.333 0.01 0.00 0.00 2.52
3743 4418 7.351166 TCCCTCCGTTCCAAAATATTTATCTT 58.649 34.615 0.01 0.00 0.00 2.40
3744 4419 6.906848 TCCCTCCGTTCCAAAATATTTATCT 58.093 36.000 0.01 0.00 0.00 1.98
3745 4420 7.576861 TTCCCTCCGTTCCAAAATATTTATC 57.423 36.000 0.01 0.00 0.00 1.75
3746 4421 9.074576 GTATTCCCTCCGTTCCAAAATATTTAT 57.925 33.333 0.01 0.00 0.00 1.40
3747 4422 8.053963 TGTATTCCCTCCGTTCCAAAATATTTA 58.946 33.333 0.01 0.00 0.00 1.40
3748 4423 6.893005 TGTATTCCCTCCGTTCCAAAATATTT 59.107 34.615 0.00 0.00 0.00 1.40
3749 4424 6.428295 TGTATTCCCTCCGTTCCAAAATATT 58.572 36.000 0.00 0.00 0.00 1.28
3750 4425 6.008696 TGTATTCCCTCCGTTCCAAAATAT 57.991 37.500 0.00 0.00 0.00 1.28
3751 4426 5.438698 TGTATTCCCTCCGTTCCAAAATA 57.561 39.130 0.00 0.00 0.00 1.40
3752 4427 4.310022 TGTATTCCCTCCGTTCCAAAAT 57.690 40.909 0.00 0.00 0.00 1.82
3753 4428 3.791953 TGTATTCCCTCCGTTCCAAAA 57.208 42.857 0.00 0.00 0.00 2.44
3754 4429 3.791953 TTGTATTCCCTCCGTTCCAAA 57.208 42.857 0.00 0.00 0.00 3.28
3755 4430 3.616219 CATTGTATTCCCTCCGTTCCAA 58.384 45.455 0.00 0.00 0.00 3.53
3756 4431 2.682563 GCATTGTATTCCCTCCGTTCCA 60.683 50.000 0.00 0.00 0.00 3.53
3757 4432 1.947456 GCATTGTATTCCCTCCGTTCC 59.053 52.381 0.00 0.00 0.00 3.62
3758 4433 2.639065 TGCATTGTATTCCCTCCGTTC 58.361 47.619 0.00 0.00 0.00 3.95
3759 4434 2.799126 TGCATTGTATTCCCTCCGTT 57.201 45.000 0.00 0.00 0.00 4.44
3760 4435 2.575532 CATGCATTGTATTCCCTCCGT 58.424 47.619 0.00 0.00 0.00 4.69
3761 4436 1.881973 CCATGCATTGTATTCCCTCCG 59.118 52.381 0.00 0.00 0.00 4.63
3762 4437 2.949447 ACCATGCATTGTATTCCCTCC 58.051 47.619 0.69 0.00 0.00 4.30
3763 4438 3.953612 TGAACCATGCATTGTATTCCCTC 59.046 43.478 3.50 0.00 0.00 4.30
3764 4439 3.956199 CTGAACCATGCATTGTATTCCCT 59.044 43.478 3.50 0.00 0.00 4.20
3765 4440 3.491447 GCTGAACCATGCATTGTATTCCC 60.491 47.826 3.50 0.00 0.00 3.97
3766 4441 3.382546 AGCTGAACCATGCATTGTATTCC 59.617 43.478 3.50 0.00 0.00 3.01
3767 4442 4.644103 AGCTGAACCATGCATTGTATTC 57.356 40.909 3.50 0.00 0.00 1.75
3768 4443 4.708421 AGAAGCTGAACCATGCATTGTATT 59.292 37.500 3.50 0.00 0.00 1.89
3799 4474 3.274288 GAGGTCTGACTATTTGGCTTGG 58.726 50.000 7.85 0.00 0.00 3.61
3824 4499 2.728690 TTACTGCCTTGCTTGCATTG 57.271 45.000 0.00 0.00 38.22 2.82
3860 4551 5.116180 TCGATGATCGCTTAAATCCAAAGT 58.884 37.500 10.45 0.00 40.21 2.66
3861 4552 5.657470 TCGATGATCGCTTAAATCCAAAG 57.343 39.130 10.45 0.00 40.21 2.77
3862 4553 6.228273 GATCGATGATCGCTTAAATCCAAA 57.772 37.500 10.45 0.00 40.21 3.28
3863 4554 5.845985 GATCGATGATCGCTTAAATCCAA 57.154 39.130 10.45 0.00 40.21 3.53
3889 4582 2.489329 CCATGGAGTCGCTTTGAAACAT 59.511 45.455 5.56 0.00 0.00 2.71
3892 4585 0.881118 GCCATGGAGTCGCTTTGAAA 59.119 50.000 18.40 0.00 0.00 2.69
3923 4619 2.912956 TCCCTACTGCTTGAGACCATTT 59.087 45.455 0.00 0.00 0.00 2.32
3924 4620 2.551270 TCCCTACTGCTTGAGACCATT 58.449 47.619 0.00 0.00 0.00 3.16
3934 4630 0.896940 TTCGGTCGTTCCCTACTGCT 60.897 55.000 0.00 0.00 0.00 4.24
3935 4631 0.175073 ATTCGGTCGTTCCCTACTGC 59.825 55.000 0.00 0.00 0.00 4.40
3936 4632 2.094390 TCAATTCGGTCGTTCCCTACTG 60.094 50.000 0.00 0.00 0.00 2.74
3937 4633 2.094338 GTCAATTCGGTCGTTCCCTACT 60.094 50.000 0.00 0.00 0.00 2.57
3938 4634 2.265683 GTCAATTCGGTCGTTCCCTAC 58.734 52.381 0.00 0.00 0.00 3.18
3939 4635 1.205417 GGTCAATTCGGTCGTTCCCTA 59.795 52.381 0.00 0.00 0.00 3.53
3940 4636 0.036671 GGTCAATTCGGTCGTTCCCT 60.037 55.000 0.00 0.00 0.00 4.20
3941 4637 0.036671 AGGTCAATTCGGTCGTTCCC 60.037 55.000 0.00 0.00 0.00 3.97
3942 4638 2.660189 TAGGTCAATTCGGTCGTTCC 57.340 50.000 0.00 0.00 0.00 3.62
3943 4639 3.121544 GGATAGGTCAATTCGGTCGTTC 58.878 50.000 0.00 0.00 0.00 3.95
3944 4640 2.764572 AGGATAGGTCAATTCGGTCGTT 59.235 45.455 0.00 0.00 0.00 3.85
3945 4641 2.385803 AGGATAGGTCAATTCGGTCGT 58.614 47.619 0.00 0.00 0.00 4.34
3946 4642 4.296690 GTTAGGATAGGTCAATTCGGTCG 58.703 47.826 0.00 0.00 0.00 4.79
3947 4643 4.202090 ACGTTAGGATAGGTCAATTCGGTC 60.202 45.833 0.00 0.00 0.00 4.79
3948 4644 3.703052 ACGTTAGGATAGGTCAATTCGGT 59.297 43.478 0.00 0.00 0.00 4.69
3949 4645 4.049186 CACGTTAGGATAGGTCAATTCGG 58.951 47.826 0.00 0.00 0.00 4.30
3950 4646 4.928601 TCACGTTAGGATAGGTCAATTCG 58.071 43.478 0.00 0.00 0.00 3.34
3951 4647 6.039493 TCTCTCACGTTAGGATAGGTCAATTC 59.961 42.308 0.00 0.00 0.00 2.17
3952 4648 5.892119 TCTCTCACGTTAGGATAGGTCAATT 59.108 40.000 0.00 0.00 0.00 2.32
3953 4649 5.299782 GTCTCTCACGTTAGGATAGGTCAAT 59.700 44.000 0.00 0.00 0.00 2.57
3954 4650 4.639310 GTCTCTCACGTTAGGATAGGTCAA 59.361 45.833 0.00 0.00 0.00 3.18
3955 4651 4.197750 GTCTCTCACGTTAGGATAGGTCA 58.802 47.826 0.00 0.00 0.00 4.02
3956 4652 3.248125 CGTCTCTCACGTTAGGATAGGTC 59.752 52.174 0.00 0.00 44.07 3.85
3957 4653 3.204526 CGTCTCTCACGTTAGGATAGGT 58.795 50.000 0.00 0.00 44.07 3.08
3958 4654 3.881780 CGTCTCTCACGTTAGGATAGG 57.118 52.381 0.00 0.00 44.07 2.57
3969 4665 1.587054 CCACCCAGTCGTCTCTCAC 59.413 63.158 0.00 0.00 0.00 3.51
3970 4666 2.276116 GCCACCCAGTCGTCTCTCA 61.276 63.158 0.00 0.00 0.00 3.27
3971 4667 1.939769 GAGCCACCCAGTCGTCTCTC 61.940 65.000 0.00 0.00 0.00 3.20
3972 4668 1.979693 GAGCCACCCAGTCGTCTCT 60.980 63.158 0.00 0.00 0.00 3.10
3973 4669 1.608717 ATGAGCCACCCAGTCGTCTC 61.609 60.000 0.00 0.00 0.00 3.36
3974 4670 0.324368 TATGAGCCACCCAGTCGTCT 60.324 55.000 0.00 0.00 0.00 4.18
3975 4671 0.535335 TTATGAGCCACCCAGTCGTC 59.465 55.000 0.00 0.00 0.00 4.20
3976 4672 0.249398 GTTATGAGCCACCCAGTCGT 59.751 55.000 0.00 0.00 0.00 4.34
3977 4673 0.462047 GGTTATGAGCCACCCAGTCG 60.462 60.000 0.00 0.00 0.00 4.18
3978 4674 3.478540 GGTTATGAGCCACCCAGTC 57.521 57.895 0.00 0.00 0.00 3.51
3996 4692 0.543749 GATGTGACTGGAGAAGGGGG 59.456 60.000 0.00 0.00 0.00 5.40
3997 4693 1.484240 GAGATGTGACTGGAGAAGGGG 59.516 57.143 0.00 0.00 0.00 4.79
3998 4694 1.135915 CGAGATGTGACTGGAGAAGGG 59.864 57.143 0.00 0.00 0.00 3.95
3999 4695 1.821753 ACGAGATGTGACTGGAGAAGG 59.178 52.381 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.