Multiple sequence alignment - TraesCS7B01G176400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G176400 chr7B 100.000 5817 0 0 1 5817 248540768 248546584 0.000000e+00 10743.0
1 TraesCS7B01G176400 chr7B 92.496 613 42 3 1 611 320117578 320118188 0.000000e+00 874.0
2 TraesCS7B01G176400 chr7B 87.698 569 50 16 1 564 721809581 721809028 0.000000e+00 645.0
3 TraesCS7B01G176400 chr7A 91.977 3440 102 78 2469 5817 294407573 294410929 0.000000e+00 4663.0
4 TraesCS7B01G176400 chr7A 93.074 1285 41 18 684 1945 294405362 294406621 0.000000e+00 1836.0
5 TraesCS7B01G176400 chr7A 87.409 548 33 12 1944 2462 294406703 294407243 1.080000e-166 597.0
6 TraesCS7B01G176400 chr7D 90.697 3343 121 77 2562 5817 268549094 268552333 0.000000e+00 4276.0
7 TraesCS7B01G176400 chr7D 89.657 1982 87 48 684 2591 268547151 268549088 0.000000e+00 2416.0
8 TraesCS7B01G176400 chr5B 92.222 630 43 4 1 628 665716171 665716796 0.000000e+00 887.0
9 TraesCS7B01G176400 chr5B 86.295 664 48 22 1 628 355900653 355901309 0.000000e+00 682.0
10 TraesCS7B01G176400 chr5B 90.722 485 20 4 1933 2417 146124388 146123929 1.780000e-174 623.0
11 TraesCS7B01G176400 chr6B 91.325 634 47 6 1 628 157650163 157649532 0.000000e+00 859.0
12 TraesCS7B01G176400 chr6B 93.617 47 2 1 4336 4382 616933606 616933651 1.050000e-07 69.4
13 TraesCS7B01G176400 chr2D 89.297 654 40 12 1 628 61802272 61802921 0.000000e+00 793.0
14 TraesCS7B01G176400 chr2D 86.636 651 46 12 1 628 589321337 589320705 0.000000e+00 682.0
15 TraesCS7B01G176400 chr2D 92.000 50 4 0 621 670 589320689 589320640 2.910000e-08 71.3
16 TraesCS7B01G176400 chr1D 89.247 651 42 6 1 628 335078536 335079181 0.000000e+00 789.0
17 TraesCS7B01G176400 chr6D 86.744 694 44 25 1 670 354544749 354544080 0.000000e+00 728.0
18 TraesCS7B01G176400 chr6D 83.639 709 68 29 1 670 409482619 409481920 1.780000e-174 623.0
19 TraesCS7B01G176400 chr6D 94.444 54 0 3 4333 4386 3143070 3143020 4.830000e-11 80.5
20 TraesCS7B01G176400 chr2B 86.858 662 53 20 1 628 664369537 664370198 0.000000e+00 710.0
21 TraesCS7B01G176400 chr2B 81.119 286 27 15 392 672 442534714 442534977 2.750000e-48 204.0
22 TraesCS7B01G176400 chr5A 91.535 508 32 9 1 505 120756828 120756329 0.000000e+00 689.0
23 TraesCS7B01G176400 chr5A 86.107 655 55 16 1 628 120755669 120755024 0.000000e+00 673.0
24 TraesCS7B01G176400 chr5A 92.157 51 3 1 4339 4388 512831217 512831167 2.910000e-08 71.3
25 TraesCS7B01G176400 chr4B 83.361 601 63 13 103 672 639157216 639157810 6.680000e-144 521.0
26 TraesCS7B01G176400 chr4B 86.885 61 2 5 4333 4392 9795613 9795668 4.870000e-06 63.9
27 TraesCS7B01G176400 chr4A 92.727 55 4 0 616 670 620426660 620426714 4.830000e-11 80.5
28 TraesCS7B01G176400 chr4A 94.000 50 3 0 621 670 607474260 607474309 6.250000e-10 76.8
29 TraesCS7B01G176400 chr4D 77.372 137 27 4 3771 3905 453221312 453221446 1.740000e-10 78.7
30 TraesCS7B01G176400 chr3B 95.556 45 2 0 4335 4379 667663834 667663878 8.090000e-09 73.1
31 TraesCS7B01G176400 chr5D 92.157 51 3 1 4339 4388 407527343 407527293 2.910000e-08 71.3
32 TraesCS7B01G176400 chr6A 89.091 55 6 0 616 670 571904718 571904772 1.050000e-07 69.4
33 TraesCS7B01G176400 chr1B 88.333 60 3 3 4333 4392 571427539 571427594 1.050000e-07 69.4
34 TraesCS7B01G176400 chr1A 93.617 47 2 1 4336 4382 376754442 376754397 1.050000e-07 69.4
35 TraesCS7B01G176400 chr1A 90.566 53 2 3 4331 4381 12091265 12091214 3.760000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G176400 chr7B 248540768 248546584 5816 False 10743.000000 10743 100.000 1 5817 1 chr7B.!!$F1 5816
1 TraesCS7B01G176400 chr7B 320117578 320118188 610 False 874.000000 874 92.496 1 611 1 chr7B.!!$F2 610
2 TraesCS7B01G176400 chr7B 721809028 721809581 553 True 645.000000 645 87.698 1 564 1 chr7B.!!$R1 563
3 TraesCS7B01G176400 chr7A 294405362 294410929 5567 False 2365.333333 4663 90.820 684 5817 3 chr7A.!!$F1 5133
4 TraesCS7B01G176400 chr7D 268547151 268552333 5182 False 3346.000000 4276 90.177 684 5817 2 chr7D.!!$F1 5133
5 TraesCS7B01G176400 chr5B 665716171 665716796 625 False 887.000000 887 92.222 1 628 1 chr5B.!!$F2 627
6 TraesCS7B01G176400 chr5B 355900653 355901309 656 False 682.000000 682 86.295 1 628 1 chr5B.!!$F1 627
7 TraesCS7B01G176400 chr6B 157649532 157650163 631 True 859.000000 859 91.325 1 628 1 chr6B.!!$R1 627
8 TraesCS7B01G176400 chr2D 61802272 61802921 649 False 793.000000 793 89.297 1 628 1 chr2D.!!$F1 627
9 TraesCS7B01G176400 chr2D 589320640 589321337 697 True 376.650000 682 89.318 1 670 2 chr2D.!!$R1 669
10 TraesCS7B01G176400 chr1D 335078536 335079181 645 False 789.000000 789 89.247 1 628 1 chr1D.!!$F1 627
11 TraesCS7B01G176400 chr6D 354544080 354544749 669 True 728.000000 728 86.744 1 670 1 chr6D.!!$R2 669
12 TraesCS7B01G176400 chr6D 409481920 409482619 699 True 623.000000 623 83.639 1 670 1 chr6D.!!$R3 669
13 TraesCS7B01G176400 chr2B 664369537 664370198 661 False 710.000000 710 86.858 1 628 1 chr2B.!!$F2 627
14 TraesCS7B01G176400 chr5A 120755024 120756828 1804 True 681.000000 689 88.821 1 628 2 chr5A.!!$R2 627
15 TraesCS7B01G176400 chr4B 639157216 639157810 594 False 521.000000 521 83.361 103 672 1 chr4B.!!$F2 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 2028 0.032815 GGAGATGCTCTTACTCCGGC 59.967 60.0 0.00 0.0 40.28 6.13 F
1182 2542 0.035317 TGAGTTAGCTGCCACAGGTG 59.965 55.0 9.43 0.0 42.42 4.00 F
2224 3713 0.606604 GGCTACTCACCGGACAAGAA 59.393 55.0 9.46 0.0 0.00 2.52 F
2867 4766 0.250513 GCTCGTCCTTGGTCCAATCT 59.749 55.0 4.34 0.0 0.00 2.40 F
4221 6170 0.036732 TCAAGACCATCGCCAGCTTT 59.963 50.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2467 3993 0.108472 GCCTAGTCGTAAGCCCGTTT 60.108 55.0 0.00 0.0 37.18 3.60 R
2611 4489 0.474184 CTGGGCCGAATATTGACCCT 59.526 55.0 14.92 0.0 41.44 4.34 R
3425 5354 0.244721 GATTGGCACACTTCTTGGCC 59.755 55.0 0.00 0.0 39.29 5.36 R
4454 6404 0.730265 CGTAGAGCTGCGAGAAGAGT 59.270 55.0 1.65 0.0 41.16 3.24 R
5326 7322 0.031994 ATTGTTGCTTTGTGCCCGTC 59.968 50.0 0.00 0.0 42.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
260 262 1.754234 GGGAGGCATTGGCGAATGT 60.754 57.895 20.66 3.95 41.09 2.71
281 283 1.927174 GCAGTGCGATATCGTTCAAGT 59.073 47.619 24.99 9.72 42.22 3.16
372 390 1.336332 CCGACGAGGATGATGATGGTC 60.336 57.143 0.00 0.00 45.00 4.02
474 564 8.080417 TCTATCTAGTTGCACCGATGTAAATAC 58.920 37.037 0.00 0.00 31.71 1.89
533 661 4.875544 AAATATTGTACAATGAGCGCGT 57.124 36.364 27.62 5.42 32.50 6.01
534 662 5.977171 AAATATTGTACAATGAGCGCGTA 57.023 34.783 27.62 8.42 32.50 4.42
586 1875 1.511887 CGCACGCGCTGCTTTTTAT 60.512 52.632 24.04 0.00 44.64 1.40
601 1928 2.923426 TTTATCGCGGCTGCTGGAGG 62.923 60.000 17.03 0.00 39.65 4.30
672 2022 5.189659 ACGTCTATTGGAGATGCTCTTAC 57.810 43.478 0.00 0.00 44.07 2.34
673 2023 4.890581 ACGTCTATTGGAGATGCTCTTACT 59.109 41.667 0.00 0.00 44.07 2.24
674 2024 5.009210 ACGTCTATTGGAGATGCTCTTACTC 59.991 44.000 0.00 0.00 44.07 2.59
675 2025 7.907594 ACGTCTATTGGAGATGCTCTTACTCC 61.908 46.154 0.00 0.00 44.07 3.85
678 2028 0.032815 GGAGATGCTCTTACTCCGGC 59.967 60.000 0.00 0.00 40.28 6.13
679 2029 0.318275 GAGATGCTCTTACTCCGGCG 60.318 60.000 0.00 0.00 0.00 6.46
680 2030 1.300233 GATGCTCTTACTCCGGCGG 60.300 63.158 22.51 22.51 0.00 6.13
681 2031 2.701163 GATGCTCTTACTCCGGCGGG 62.701 65.000 27.98 19.08 0.00 6.13
682 2032 4.222847 GCTCTTACTCCGGCGGGG 62.223 72.222 27.26 27.26 37.02 5.73
721 2071 1.550130 TAGCTAAGCCCTTGTGCCGT 61.550 55.000 0.00 0.00 0.00 5.68
853 2204 1.480137 CCACTCCTCACTGGATCACTC 59.520 57.143 0.00 0.00 45.16 3.51
900 2251 0.903942 CAGGGCTCTGCTTCTCTCTT 59.096 55.000 0.00 0.00 33.86 2.85
911 2262 3.837146 TGCTTCTCTCTTCAGATCTGGTT 59.163 43.478 22.42 0.00 0.00 3.67
912 2263 4.081752 TGCTTCTCTCTTCAGATCTGGTTC 60.082 45.833 22.42 1.96 0.00 3.62
969 2320 0.836400 AGGAGGAAACAAGGAGCCGA 60.836 55.000 0.00 0.00 0.00 5.54
970 2321 0.036306 GGAGGAAACAAGGAGCCGAA 59.964 55.000 0.00 0.00 0.00 4.30
971 2322 1.443802 GAGGAAACAAGGAGCCGAAG 58.556 55.000 0.00 0.00 0.00 3.79
972 2323 1.002087 GAGGAAACAAGGAGCCGAAGA 59.998 52.381 0.00 0.00 0.00 2.87
989 2343 4.490743 CGAAGAAGGAGAAGGAGAAGAAC 58.509 47.826 0.00 0.00 0.00 3.01
995 2352 2.545731 GAGAAGGAGAAGAACGATGGC 58.454 52.381 0.00 0.00 0.00 4.40
1000 2357 1.202417 GGAGAAGAACGATGGCGATGA 60.202 52.381 0.00 0.00 41.64 2.92
1005 2362 0.861837 GAACGATGGCGATGATGGAC 59.138 55.000 0.00 0.00 41.64 4.02
1054 2411 1.401905 GGTATTTCAAGGGCAAGAGCG 59.598 52.381 0.00 0.00 43.41 5.03
1116 2476 8.333908 AGTAAGTACACGATCGAGTATTAGTTG 58.666 37.037 24.65 11.13 0.00 3.16
1180 2540 1.160137 GTTGAGTTAGCTGCCACAGG 58.840 55.000 0.00 0.00 31.21 4.00
1182 2542 0.035317 TGAGTTAGCTGCCACAGGTG 59.965 55.000 9.43 0.00 42.42 4.00
1227 2601 4.504514 CGTACTCTACTCTACTGCCCCATA 60.505 50.000 0.00 0.00 0.00 2.74
1279 2653 3.549625 GGATAATTAACGAGACGACGGCT 60.550 47.826 0.71 0.71 37.61 5.52
1306 2680 1.813092 GCGGCACTGATCTGATCCATT 60.813 52.381 14.71 0.00 0.00 3.16
1339 2713 2.813179 CTATGCGTGCCTTCCGTGC 61.813 63.158 0.00 0.00 0.00 5.34
1485 2859 2.814280 ACTCACTCCACGTTACTTGG 57.186 50.000 1.04 1.04 35.18 3.61
1492 2866 1.067425 TCCACGTTACTTGGACGGATG 60.067 52.381 6.48 0.00 44.34 3.51
1493 2867 0.719465 CACGTTACTTGGACGGATGC 59.281 55.000 1.64 0.00 44.34 3.91
1495 2869 0.999406 CGTTACTTGGACGGATGCAG 59.001 55.000 0.00 0.00 36.90 4.41
1496 2870 1.403647 CGTTACTTGGACGGATGCAGA 60.404 52.381 0.00 0.00 36.90 4.26
1502 2876 1.122227 TGGACGGATGCAGATCATGA 58.878 50.000 0.00 0.00 35.05 3.07
1504 2878 1.607509 GGACGGATGCAGATCATGAGG 60.608 57.143 0.09 0.00 35.05 3.86
1506 2880 0.954449 CGGATGCAGATCATGAGGGC 60.954 60.000 0.09 5.33 35.05 5.19
1508 2882 0.954449 GATGCAGATCATGAGGGCCG 60.954 60.000 0.09 0.00 35.05 6.13
1509 2883 1.703014 ATGCAGATCATGAGGGCCGT 61.703 55.000 0.00 0.00 33.26 5.68
1510 2884 1.890979 GCAGATCATGAGGGCCGTG 60.891 63.158 0.65 0.00 0.00 4.94
1511 2885 1.524002 CAGATCATGAGGGCCGTGT 59.476 57.895 0.65 0.00 33.53 4.49
1512 2886 0.812811 CAGATCATGAGGGCCGTGTG 60.813 60.000 0.65 1.43 33.53 3.82
1513 2887 2.124570 ATCATGAGGGCCGTGTGC 60.125 61.111 0.65 0.00 40.16 4.57
1514 2888 2.874648 GATCATGAGGGCCGTGTGCA 62.875 60.000 0.65 0.00 43.89 4.57
1515 2889 2.274948 ATCATGAGGGCCGTGTGCAT 62.275 55.000 0.65 0.00 43.89 3.96
1516 2890 2.438975 ATGAGGGCCGTGTGCATG 60.439 61.111 0.65 0.00 43.89 4.06
1519 2893 4.746309 AGGGCCGTGTGCATGCAT 62.746 61.111 25.64 1.21 43.89 3.96
1520 2894 4.197498 GGGCCGTGTGCATGCATC 62.197 66.667 25.64 18.35 43.89 3.91
1538 2912 2.759839 TCCATCCATCCATGCACAAT 57.240 45.000 0.00 0.00 0.00 2.71
1593 2967 2.164827 TGTGTGGATTTCTCATGCATGC 59.835 45.455 22.25 11.82 0.00 4.06
1702 3076 1.856629 TCCTCCGTCCGGAATTACTT 58.143 50.000 5.23 0.00 44.66 2.24
1788 3164 2.620779 TCGAAGCAAGAGAAGAGACG 57.379 50.000 0.00 0.00 0.00 4.18
2059 3541 4.215399 TGGTAAAATGTGAAAAGCTCCGAG 59.785 41.667 0.00 0.00 0.00 4.63
2172 3661 1.024271 TTCTGGTTGCTGAACTGTGC 58.976 50.000 0.00 0.00 32.15 4.57
2207 3696 2.356135 TCCGTTATGAGAAAAGCTGGC 58.644 47.619 0.00 0.00 0.00 4.85
2224 3713 0.606604 GGCTACTCACCGGACAAGAA 59.393 55.000 9.46 0.00 0.00 2.52
2225 3714 1.001633 GGCTACTCACCGGACAAGAAA 59.998 52.381 9.46 0.00 0.00 2.52
2242 3731 4.918810 AGAAAAGAGGCAAACGTTGATT 57.081 36.364 0.00 0.00 0.00 2.57
2260 3749 6.682863 CGTTGATTCGGAAGTTTGATTATCAC 59.317 38.462 0.00 0.00 0.00 3.06
2261 3750 6.344572 TGATTCGGAAGTTTGATTATCACG 57.655 37.500 0.00 0.00 0.00 4.35
2283 3772 2.289945 ACTCATCTCTCAGTGCCAAACC 60.290 50.000 0.00 0.00 0.00 3.27
2334 3823 7.108847 AGTACTATAGTAGACGGTGTTTGACT 58.891 38.462 12.99 1.90 0.00 3.41
2406 3906 5.351465 TGCGATGTAAAGAATGGAGAACTTC 59.649 40.000 0.00 0.00 0.00 3.01
2511 4359 4.585581 CACCAAATGAATGAGCCATATGGA 59.414 41.667 26.47 4.86 37.39 3.41
2572 4420 5.121611 CCTCCCACAGAAAACAAAAACAAAC 59.878 40.000 0.00 0.00 0.00 2.93
2730 4619 6.615264 CTAGTGCTAGCAATTCATGTTCAT 57.385 37.500 24.19 0.00 0.00 2.57
2731 4620 7.719778 CTAGTGCTAGCAATTCATGTTCATA 57.280 36.000 24.19 0.00 0.00 2.15
2732 4621 6.369059 AGTGCTAGCAATTCATGTTCATAC 57.631 37.500 21.29 1.17 0.00 2.39
2733 4622 6.118170 AGTGCTAGCAATTCATGTTCATACT 58.882 36.000 21.29 3.81 0.00 2.12
2734 4623 6.600822 AGTGCTAGCAATTCATGTTCATACTT 59.399 34.615 21.29 0.00 0.00 2.24
2735 4624 7.770433 AGTGCTAGCAATTCATGTTCATACTTA 59.230 33.333 21.29 0.00 0.00 2.24
2858 4757 2.504244 GTCGTCCGCTCGTCCTTG 60.504 66.667 0.00 0.00 0.00 3.61
2867 4766 0.250513 GCTCGTCCTTGGTCCAATCT 59.749 55.000 4.34 0.00 0.00 2.40
2931 4846 7.986085 TTTTCTTTCTATCCACCTCTGAAAG 57.014 36.000 0.00 0.00 42.63 2.62
2985 4904 8.039603 TGGCATGTGTAGTTACTAAAGAAATG 57.960 34.615 0.00 0.00 0.00 2.32
3203 5126 2.045536 GAGCTGGCCAAGGAGGTG 60.046 66.667 7.01 0.00 40.61 4.00
3293 5222 2.908916 TCCGCTTTTATAAACGGAGGG 58.091 47.619 20.24 13.11 44.63 4.30
3398 5327 2.584791 GTTGCGTTGGATGTGAATGTC 58.415 47.619 0.00 0.00 0.00 3.06
3425 5354 1.873591 GTGAAGTACCTGTGCCAGTTG 59.126 52.381 0.00 0.00 0.00 3.16
3480 5409 1.227853 GTTTCCACCGGTCAGCACT 60.228 57.895 2.59 0.00 0.00 4.40
3516 5445 4.382754 GGATTTGTGTCGAAAAATGCTGAC 59.617 41.667 11.36 0.00 33.00 3.51
3517 5446 4.362932 TTTGTGTCGAAAAATGCTGACA 57.637 36.364 0.00 0.00 38.91 3.58
3518 5447 4.362932 TTGTGTCGAAAAATGCTGACAA 57.637 36.364 0.00 0.00 42.43 3.18
3519 5448 4.362932 TGTGTCGAAAAATGCTGACAAA 57.637 36.364 0.00 0.00 42.43 2.83
3636 5582 1.807886 GTACCTGGACATCGACGCT 59.192 57.895 0.00 0.00 0.00 5.07
3873 5822 0.952280 GCATCATCACCAGCATCCTG 59.048 55.000 0.00 0.00 38.85 3.86
4221 6170 0.036732 TCAAGACCATCGCCAGCTTT 59.963 50.000 0.00 0.00 0.00 3.51
4290 6239 8.272866 CGTCTCTCTTTTCTTTTCTCTTCTTTC 58.727 37.037 0.00 0.00 0.00 2.62
4293 6242 9.119418 CTCTCTTTTCTTTTCTCTTCTTTCCTT 57.881 33.333 0.00 0.00 0.00 3.36
4295 6244 9.729023 CTCTTTTCTTTTCTCTTCTTTCCTTTC 57.271 33.333 0.00 0.00 0.00 2.62
4298 6247 8.595362 TTTCTTTTCTCTTCTTTCCTTTCCTT 57.405 30.769 0.00 0.00 0.00 3.36
4302 6251 8.595362 TTTTCTCTTCTTTCCTTTCCTTTTCT 57.405 30.769 0.00 0.00 0.00 2.52
4305 6254 7.346471 TCTCTTCTTTCCTTTCCTTTTCTTCA 58.654 34.615 0.00 0.00 0.00 3.02
4308 6257 9.640952 TCTTCTTTCCTTTCCTTTTCTTCAATA 57.359 29.630 0.00 0.00 0.00 1.90
4333 6282 5.397142 AGGCAATCAATCCAAGAAGAAAC 57.603 39.130 0.00 0.00 0.00 2.78
4337 6286 7.398332 AGGCAATCAATCCAAGAAGAAACTATT 59.602 33.333 0.00 0.00 0.00 1.73
4375 6324 9.902196 AAAACGTCTTATATTTGTTTACAAGGG 57.098 29.630 0.00 0.00 37.15 3.95
4376 6325 7.619964 ACGTCTTATATTTGTTTACAAGGGG 57.380 36.000 0.00 0.00 37.15 4.79
4380 6330 9.895138 GTCTTATATTTGTTTACAAGGGGAGTA 57.105 33.333 0.00 0.00 37.15 2.59
4454 6404 2.604686 AACCTGCTCCTCTGCGGA 60.605 61.111 0.00 0.00 41.56 5.54
4538 6488 1.153628 CTACGGTCCCTTCGCCTTG 60.154 63.158 0.00 0.00 0.00 3.61
4580 6530 3.612004 GCGTCACAAACTACTGCTAGTCT 60.612 47.826 0.00 0.00 31.42 3.24
4590 6540 6.458232 ACTACTGCTAGTCTAACCTTCATG 57.542 41.667 0.00 0.00 0.00 3.07
4654 6604 7.451255 TCTTTACTTGTCCAACCATTGAATGAT 59.549 33.333 6.76 0.00 0.00 2.45
4656 6606 8.642935 TTACTTGTCCAACCATTGAATGATTA 57.357 30.769 6.76 0.00 0.00 1.75
4658 6608 7.378181 ACTTGTCCAACCATTGAATGATTAAC 58.622 34.615 6.76 0.00 0.00 2.01
4747 6702 5.925397 CGACATGTTCAATTTTGATCCCAAA 59.075 36.000 0.00 0.00 40.24 3.28
4813 6768 4.065088 GTGTCCTCAAGTATGTGCTCAAA 58.935 43.478 0.00 0.00 0.00 2.69
4940 6895 3.228188 AGGAAGACTTTTCACATGCCA 57.772 42.857 0.00 0.00 0.00 4.92
4942 6897 2.887152 GGAAGACTTTTCACATGCCAGT 59.113 45.455 0.00 0.00 0.00 4.00
5123 7090 4.998671 TTGAAGCACAGGAATTTCACAA 57.001 36.364 0.00 0.00 29.96 3.33
5203 7198 4.292186 AGTAGTGCCAACTCATGTTCAT 57.708 40.909 0.00 0.00 37.88 2.57
5223 7218 1.617018 TTCGACCTCTCATGGGCAGG 61.617 60.000 8.94 8.94 33.86 4.85
5241 7236 0.035739 GGTCAGGTTTAGCCCGACAA 59.964 55.000 3.99 0.00 38.26 3.18
5306 7302 4.261322 CGTGCAAAGATATGCCTGCTAAAT 60.261 41.667 0.00 0.00 45.83 1.40
5318 7314 3.242446 GCCTGCTAAATAAAGACACGAGC 60.242 47.826 0.00 0.00 0.00 5.03
5319 7315 3.000322 CCTGCTAAATAAAGACACGAGCG 60.000 47.826 0.00 0.00 0.00 5.03
5320 7316 2.347452 TGCTAAATAAAGACACGAGCGC 59.653 45.455 0.00 0.00 0.00 5.92
5321 7317 2.347452 GCTAAATAAAGACACGAGCGCA 59.653 45.455 11.47 0.00 0.00 6.09
5322 7318 3.542291 GCTAAATAAAGACACGAGCGCAG 60.542 47.826 11.47 5.62 0.00 5.18
5323 7319 2.363788 AATAAAGACACGAGCGCAGA 57.636 45.000 11.47 0.00 0.00 4.26
5324 7320 1.914634 ATAAAGACACGAGCGCAGAG 58.085 50.000 11.47 4.28 0.00 3.35
5325 7321 0.879090 TAAAGACACGAGCGCAGAGA 59.121 50.000 11.47 0.00 0.00 3.10
5326 7322 0.387878 AAAGACACGAGCGCAGAGAG 60.388 55.000 11.47 1.01 0.00 3.20
5355 7351 4.218200 CACAAAGCAACAATGAGTATGGGA 59.782 41.667 0.00 0.00 0.00 4.37
5425 7421 3.541071 TCAATGTTCGTCACAATGCTG 57.459 42.857 1.94 0.00 39.50 4.41
5426 7422 2.877786 TCAATGTTCGTCACAATGCTGT 59.122 40.909 1.94 0.00 39.50 4.40
5427 7423 3.058983 TCAATGTTCGTCACAATGCTGTC 60.059 43.478 1.94 0.00 39.50 3.51
5428 7424 1.225855 TGTTCGTCACAATGCTGTCC 58.774 50.000 0.00 0.00 31.64 4.02
5458 7454 4.159506 TGCAGAATTTACCCCATAGTTTGC 59.840 41.667 0.00 0.00 0.00 3.68
5477 7473 2.224621 TGCTTTGCACTAGGAAGCTTCT 60.225 45.455 25.05 13.83 44.55 2.85
5543 7540 2.354259 GCCATGAGAGTTGACCTGAAG 58.646 52.381 0.00 0.00 0.00 3.02
5547 7544 3.325293 TGAGAGTTGACCTGAAGCATC 57.675 47.619 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
244 246 1.226773 GCACATTCGCCAATGCCTC 60.227 57.895 3.75 0.00 43.03 4.70
260 262 1.926510 CTTGAACGATATCGCACTGCA 59.073 47.619 24.59 7.89 44.43 4.41
281 283 1.203087 TGAAGAACGACCTCCCACCTA 60.203 52.381 0.00 0.00 0.00 3.08
322 324 1.559682 AGGTTGGAGCCATATGTCGTT 59.440 47.619 1.24 0.00 0.00 3.85
372 390 2.159043 ACTCCAAGTCGCTACCATCATG 60.159 50.000 0.00 0.00 0.00 3.07
441 531 5.826208 TCGGTGCAACTAGATAGATAGTTCA 59.174 40.000 0.00 0.00 42.68 3.18
516 644 2.032894 GCATACGCGCTCATTGTACAAT 60.033 45.455 15.47 15.47 0.00 2.71
522 650 1.368493 GCAGCATACGCGCTCATTG 60.368 57.895 5.73 0.38 45.49 2.82
533 661 2.796304 GTGCGCTAAAAATGCAGCATA 58.204 42.857 8.75 0.00 39.67 3.14
534 662 1.632422 GTGCGCTAAAAATGCAGCAT 58.368 45.000 9.73 0.52 39.67 3.79
571 1860 1.226018 GCGATAAAAAGCAGCGCGT 60.226 52.632 8.43 0.00 41.25 6.01
572 1861 3.576968 GCGATAAAAAGCAGCGCG 58.423 55.556 0.00 0.00 41.25 6.86
614 1941 0.663688 TAAAAACTGCTTTGGCGCGA 59.336 45.000 12.10 0.00 42.25 5.87
624 1951 2.080636 GCCGCACGCTAAAAACTGC 61.081 57.895 0.00 0.00 0.00 4.40
721 2071 5.984926 AGTGTCAACGAAATTAAAGACCGTA 59.015 36.000 0.00 0.00 32.81 4.02
853 2204 5.056553 AGAAGAAGGCTAGGAGTAGTAGG 57.943 47.826 0.00 0.00 0.00 3.18
911 2262 2.158460 TCCAGAGACAAGGAGACACAGA 60.158 50.000 0.00 0.00 0.00 3.41
912 2263 2.242926 TCCAGAGACAAGGAGACACAG 58.757 52.381 0.00 0.00 0.00 3.66
969 2320 4.153411 TCGTTCTTCTCCTTCTCCTTCTT 58.847 43.478 0.00 0.00 0.00 2.52
970 2321 3.768878 TCGTTCTTCTCCTTCTCCTTCT 58.231 45.455 0.00 0.00 0.00 2.85
971 2322 4.429108 CATCGTTCTTCTCCTTCTCCTTC 58.571 47.826 0.00 0.00 0.00 3.46
972 2323 3.196685 CCATCGTTCTTCTCCTTCTCCTT 59.803 47.826 0.00 0.00 0.00 3.36
989 2343 2.023771 CCGTCCATCATCGCCATCG 61.024 63.158 0.00 0.00 0.00 3.84
995 2352 1.522355 AAGCTGCCGTCCATCATCG 60.522 57.895 0.00 0.00 0.00 3.84
1000 2357 2.045926 GTCCAAGCTGCCGTCCAT 60.046 61.111 0.00 0.00 0.00 3.41
1146 2506 7.121759 AGCTAACTCAACTAATAACACGTAGGA 59.878 37.037 0.00 0.00 0.00 2.94
1147 2507 7.220300 CAGCTAACTCAACTAATAACACGTAGG 59.780 40.741 0.00 0.00 0.00 3.18
1148 2508 7.253684 GCAGCTAACTCAACTAATAACACGTAG 60.254 40.741 0.00 0.00 0.00 3.51
1180 2540 0.672401 TGGCTTAAGCACGTAGGCAC 60.672 55.000 27.83 8.53 44.36 5.01
1182 2542 0.657840 CATGGCTTAAGCACGTAGGC 59.342 55.000 27.83 9.94 44.36 3.93
1259 2633 3.705043 AGCCGTCGTCTCGTTAATTAT 57.295 42.857 0.00 0.00 0.00 1.28
1339 2713 2.189594 TCTCCACAAGAACTGCATGG 57.810 50.000 0.00 0.00 0.00 3.66
1485 2859 1.607509 CCCTCATGATCTGCATCCGTC 60.608 57.143 0.00 0.00 34.15 4.79
1492 2866 1.890979 CACGGCCCTCATGATCTGC 60.891 63.158 0.00 0.00 0.00 4.26
1493 2867 0.812811 CACACGGCCCTCATGATCTG 60.813 60.000 0.00 0.00 0.00 2.90
1495 2869 2.182842 GCACACGGCCCTCATGATC 61.183 63.158 0.00 0.00 36.11 2.92
1496 2870 2.124570 GCACACGGCCCTCATGAT 60.125 61.111 0.00 0.00 36.11 2.45
1502 2876 4.746309 ATGCATGCACACGGCCCT 62.746 61.111 25.37 0.38 43.89 5.19
1504 2878 4.197498 GGATGCATGCACACGGCC 62.197 66.667 25.37 15.28 43.89 6.13
1506 2880 1.357690 GATGGATGCATGCACACGG 59.642 57.895 25.37 0.00 0.00 4.94
1508 2882 1.000607 GATGGATGGATGCATGCACAC 60.001 52.381 25.37 19.06 39.04 3.82
1509 2883 1.324383 GATGGATGGATGCATGCACA 58.676 50.000 25.37 18.26 39.04 4.57
1510 2884 0.601558 GGATGGATGGATGCATGCAC 59.398 55.000 25.37 16.53 44.22 4.57
1511 2885 3.045518 GGATGGATGGATGCATGCA 57.954 52.632 25.04 25.04 44.22 3.96
1512 2886 1.204704 CATGGATGGATGGATGCATGC 59.795 52.381 11.82 11.82 42.81 4.06
1514 2888 1.203125 TGCATGGATGGATGGATGCAT 60.203 47.619 0.00 0.00 44.75 3.96
1515 2889 0.186386 TGCATGGATGGATGGATGCA 59.814 50.000 0.00 0.00 46.80 3.96
1516 2890 0.601558 GTGCATGGATGGATGGATGC 59.398 55.000 0.00 0.00 41.34 3.91
1517 2891 1.989706 TGTGCATGGATGGATGGATG 58.010 50.000 0.00 0.00 0.00 3.51
1518 2892 2.759839 TTGTGCATGGATGGATGGAT 57.240 45.000 0.00 0.00 0.00 3.41
1519 2893 2.589720 GATTGTGCATGGATGGATGGA 58.410 47.619 0.00 0.00 0.00 3.41
1520 2894 1.616865 GGATTGTGCATGGATGGATGG 59.383 52.381 0.00 0.00 0.00 3.51
1593 2967 7.939782 TGTGCTATAATAAATCAACCACATGG 58.060 34.615 0.00 0.00 42.17 3.66
1702 3076 1.118965 TGAAAGAGAGACGTGGGGCA 61.119 55.000 0.00 0.00 0.00 5.36
2059 3541 2.972713 TGAACCCTAGGCATGGATCTAC 59.027 50.000 2.05 0.00 0.00 2.59
2172 3661 9.639601 TCTCATAACGGATTAGTATATGCAAAG 57.360 33.333 0.00 0.00 0.00 2.77
2203 3692 0.108615 CTTGTCCGGTGAGTAGCCAG 60.109 60.000 0.00 0.00 0.00 4.85
2204 3693 0.541063 TCTTGTCCGGTGAGTAGCCA 60.541 55.000 0.00 0.00 0.00 4.75
2207 3696 4.238514 CTCTTTTCTTGTCCGGTGAGTAG 58.761 47.826 0.00 0.00 0.00 2.57
2224 3713 2.031157 CCGAATCAACGTTTGCCTCTTT 60.031 45.455 0.00 0.00 0.00 2.52
2225 3714 1.535462 CCGAATCAACGTTTGCCTCTT 59.465 47.619 0.00 0.00 0.00 2.85
2242 3731 5.068234 AGTCGTGATAATCAAACTTCCGA 57.932 39.130 0.00 0.00 0.00 4.55
2260 3749 0.813821 TGGCACTGAGAGATGAGTCG 59.186 55.000 0.00 0.00 0.00 4.18
2261 3750 2.999355 GTTTGGCACTGAGAGATGAGTC 59.001 50.000 0.00 0.00 0.00 3.36
2283 3772 1.523258 CCTCTGAGCGATTGGCCAG 60.523 63.158 5.11 0.00 45.17 4.85
2419 3919 5.221244 GCTTAAAAGTTCTCCTTTCTGCCAA 60.221 40.000 0.00 0.00 42.62 4.52
2420 3920 4.278419 GCTTAAAAGTTCTCCTTTCTGCCA 59.722 41.667 0.00 0.00 42.62 4.92
2421 3921 4.520874 AGCTTAAAAGTTCTCCTTTCTGCC 59.479 41.667 0.00 0.00 42.62 4.85
2424 3924 7.201830 GGACAAAGCTTAAAAGTTCTCCTTTCT 60.202 37.037 0.00 0.00 42.62 2.52
2463 3989 3.119352 CCTAGTCGTAAGCCCGTTTACTT 60.119 47.826 0.90 0.00 32.58 2.24
2465 3991 2.802256 CCTAGTCGTAAGCCCGTTTAC 58.198 52.381 0.00 0.00 37.18 2.01
2466 3992 1.134946 GCCTAGTCGTAAGCCCGTTTA 59.865 52.381 0.00 0.00 37.18 2.01
2467 3993 0.108472 GCCTAGTCGTAAGCCCGTTT 60.108 55.000 0.00 0.00 37.18 3.60
2468 3994 1.252904 TGCCTAGTCGTAAGCCCGTT 61.253 55.000 0.00 0.00 37.18 4.44
2469 3995 1.679977 TGCCTAGTCGTAAGCCCGT 60.680 57.895 0.00 0.00 37.18 5.28
2470 3996 1.226888 GTGCCTAGTCGTAAGCCCG 60.227 63.158 0.00 0.00 37.18 6.13
2511 4359 4.437682 TGGACTCAAATCAACCAACTCT 57.562 40.909 0.00 0.00 0.00 3.24
2572 4420 1.600485 AGGGTACGCGTGAACTTTTTG 59.400 47.619 24.59 0.00 0.00 2.44
2611 4489 0.474184 CTGGGCCGAATATTGACCCT 59.526 55.000 14.92 0.00 41.44 4.34
2615 4493 1.208706 TGGTCTGGGCCGAATATTGA 58.791 50.000 0.00 0.00 0.00 2.57
2616 4494 2.051334 TTGGTCTGGGCCGAATATTG 57.949 50.000 0.00 0.00 0.00 1.90
2624 4503 2.031870 GGTATTGAATTGGTCTGGGCC 58.968 52.381 0.00 0.00 0.00 5.80
2733 4622 9.687210 CCGCAGTACAGTAATAAGTATGAATAA 57.313 33.333 0.00 0.00 0.00 1.40
2734 4623 7.811236 GCCGCAGTACAGTAATAAGTATGAATA 59.189 37.037 0.00 0.00 0.00 1.75
2735 4624 6.645415 GCCGCAGTACAGTAATAAGTATGAAT 59.355 38.462 0.00 0.00 0.00 2.57
2858 4757 6.980416 ACTCCTACTACATAAGATTGGACC 57.020 41.667 0.00 0.00 0.00 4.46
2906 4821 7.998964 ACTTTCAGAGGTGGATAGAAAGAAAAA 59.001 33.333 17.11 0.00 44.78 1.94
2907 4822 7.518188 ACTTTCAGAGGTGGATAGAAAGAAAA 58.482 34.615 17.11 0.00 44.78 2.29
2908 4823 7.079451 ACTTTCAGAGGTGGATAGAAAGAAA 57.921 36.000 17.11 0.00 44.78 2.52
2909 4824 6.688073 ACTTTCAGAGGTGGATAGAAAGAA 57.312 37.500 17.11 0.00 44.78 2.52
2910 4825 6.467677 CAACTTTCAGAGGTGGATAGAAAGA 58.532 40.000 17.11 0.00 44.78 2.52
2911 4826 5.123027 GCAACTTTCAGAGGTGGATAGAAAG 59.877 44.000 10.62 10.62 43.62 2.62
2931 4846 2.845486 TGATTAATCGTGCGTTGCAAC 58.155 42.857 19.89 19.89 41.47 4.17
2985 4904 5.587289 TGAAAACTCAGTTTGCATTGTACC 58.413 37.500 6.89 0.00 36.29 3.34
2991 4914 4.389890 TTGCTGAAAACTCAGTTTGCAT 57.610 36.364 11.65 0.00 39.90 3.96
3203 5126 1.869767 GCTCCATTGACGATGATGTCC 59.130 52.381 4.07 0.00 38.03 4.02
3425 5354 0.244721 GATTGGCACACTTCTTGGCC 59.755 55.000 0.00 0.00 39.29 5.36
3480 5409 6.033341 CGACACAAATCCAACAAGAGAAAAA 58.967 36.000 0.00 0.00 0.00 1.94
3524 5453 0.321021 TGCTGCGGCATCCAATTTTT 59.679 45.000 18.37 0.00 44.28 1.94
3525 5454 1.973760 TGCTGCGGCATCCAATTTT 59.026 47.368 18.37 0.00 44.28 1.82
3526 5455 3.697424 TGCTGCGGCATCCAATTT 58.303 50.000 18.37 0.00 44.28 1.82
3618 5564 0.525668 CAGCGTCGATGTCCAGGTAC 60.526 60.000 6.48 0.00 0.00 3.34
3691 5637 2.664851 CTTGGTCTTGTCGCCGCA 60.665 61.111 0.00 0.00 0.00 5.69
4221 6170 4.898320 ACTTGATGAGCATGTACAAGTGA 58.102 39.130 17.09 0.00 45.70 3.41
4290 6239 8.066612 TGCCTTATATTGAAGAAAAGGAAAGG 57.933 34.615 3.66 0.00 39.26 3.11
4293 6242 9.253832 TGATTGCCTTATATTGAAGAAAAGGAA 57.746 29.630 3.66 0.00 39.26 3.36
4298 6247 9.199645 TGGATTGATTGCCTTATATTGAAGAAA 57.800 29.630 0.00 0.00 0.00 2.52
4302 6251 8.765488 TCTTGGATTGATTGCCTTATATTGAA 57.235 30.769 0.00 0.00 0.00 2.69
4305 6254 9.425248 TTCTTCTTGGATTGATTGCCTTATATT 57.575 29.630 0.00 0.00 0.00 1.28
4308 6257 7.398332 AGTTTCTTCTTGGATTGATTGCCTTAT 59.602 33.333 0.00 0.00 0.00 1.73
4352 6301 7.396418 TCCCCTTGTAAACAAATATAAGACGT 58.604 34.615 0.00 0.00 35.15 4.34
4353 6302 7.551617 ACTCCCCTTGTAAACAAATATAAGACG 59.448 37.037 0.00 0.00 35.15 4.18
4354 6303 8.803397 ACTCCCCTTGTAAACAAATATAAGAC 57.197 34.615 0.00 0.00 35.15 3.01
4362 6311 9.895138 GATTAGTATACTCCCCTTGTAAACAAA 57.105 33.333 9.12 0.00 35.15 2.83
4363 6312 9.275572 AGATTAGTATACTCCCCTTGTAAACAA 57.724 33.333 9.12 0.00 0.00 2.83
4364 6313 8.849543 AGATTAGTATACTCCCCTTGTAAACA 57.150 34.615 9.12 0.00 0.00 2.83
4369 6318 9.900112 ATTCTAAGATTAGTATACTCCCCTTGT 57.100 33.333 9.12 0.00 32.61 3.16
4409 6359 2.308344 CAGGATCTGCACGCATCAG 58.692 57.895 0.00 0.00 0.00 2.90
4454 6404 0.730265 CGTAGAGCTGCGAGAAGAGT 59.270 55.000 1.65 0.00 41.16 3.24
4538 6488 3.670627 CGCTTGCTTACCATCCTTTGAAC 60.671 47.826 0.00 0.00 0.00 3.18
4590 6540 2.297033 ACATGCTGTGTTGGAATTGACC 59.703 45.455 0.00 0.00 38.01 4.02
4654 6604 2.512485 TGTCGTCGAAGCTTGGTTAA 57.488 45.000 2.10 0.00 0.00 2.01
4656 6606 1.270094 TGATGTCGTCGAAGCTTGGTT 60.270 47.619 2.10 0.00 0.00 3.67
4658 6608 1.126846 GTTGATGTCGTCGAAGCTTGG 59.873 52.381 2.10 1.69 0.00 3.61
4753 6708 1.629043 AGAAGTAGCCGTTCCAGTCA 58.371 50.000 0.00 0.00 0.00 3.41
4764 6719 6.018994 CGGTATGTGGATTTTGTAGAAGTAGC 60.019 42.308 0.00 0.00 0.00 3.58
4813 6768 7.816995 TCTTGATAAATTTTGCTGCGGTTTTAT 59.183 29.630 0.00 2.73 0.00 1.40
5018 6985 6.430000 ACACAAACCTGATTACCTGAACATAC 59.570 38.462 0.00 0.00 0.00 2.39
5019 6986 6.539173 ACACAAACCTGATTACCTGAACATA 58.461 36.000 0.00 0.00 0.00 2.29
5020 6987 5.385198 ACACAAACCTGATTACCTGAACAT 58.615 37.500 0.00 0.00 0.00 2.71
5021 6988 4.787551 ACACAAACCTGATTACCTGAACA 58.212 39.130 0.00 0.00 0.00 3.18
5022 6989 6.870971 TTACACAAACCTGATTACCTGAAC 57.129 37.500 0.00 0.00 0.00 3.18
5023 6990 8.356657 CAAATTACACAAACCTGATTACCTGAA 58.643 33.333 0.00 0.00 0.00 3.02
5024 6991 7.523052 GCAAATTACACAAACCTGATTACCTGA 60.523 37.037 0.00 0.00 0.00 3.86
5025 6992 6.586082 GCAAATTACACAAACCTGATTACCTG 59.414 38.462 0.00 0.00 0.00 4.00
5026 6993 6.493458 AGCAAATTACACAAACCTGATTACCT 59.507 34.615 0.00 0.00 0.00 3.08
5027 6994 6.687604 AGCAAATTACACAAACCTGATTACC 58.312 36.000 0.00 0.00 0.00 2.85
5028 6995 7.367285 TGAGCAAATTACACAAACCTGATTAC 58.633 34.615 0.00 0.00 0.00 1.89
5029 6996 7.517614 TGAGCAAATTACACAAACCTGATTA 57.482 32.000 0.00 0.00 0.00 1.75
5030 6997 6.403866 TGAGCAAATTACACAAACCTGATT 57.596 33.333 0.00 0.00 0.00 2.57
5031 6998 6.015180 ACATGAGCAAATTACACAAACCTGAT 60.015 34.615 0.00 0.00 0.00 2.90
5169 7164 7.783042 AGTTGGCACTACTTCCTACTTATAAG 58.217 38.462 11.05 11.05 35.46 1.73
5203 7198 0.250234 CTGCCCATGAGAGGTCGAAA 59.750 55.000 0.00 0.00 0.00 3.46
5241 7236 3.700538 TCTATTTGCTCATGTTTGGCCT 58.299 40.909 3.32 0.00 0.00 5.19
5306 7302 0.879090 TCTCTGCGCTCGTGTCTTTA 59.121 50.000 9.73 0.00 0.00 1.85
5318 7314 3.573772 TTGTGCCCGTCTCTCTGCG 62.574 63.158 0.00 0.00 0.00 5.18
5319 7315 1.294659 CTTTGTGCCCGTCTCTCTGC 61.295 60.000 0.00 0.00 0.00 4.26
5320 7316 1.294659 GCTTTGTGCCCGTCTCTCTG 61.295 60.000 0.00 0.00 35.15 3.35
5321 7317 1.004440 GCTTTGTGCCCGTCTCTCT 60.004 57.895 0.00 0.00 35.15 3.10
5322 7318 0.884704 TTGCTTTGTGCCCGTCTCTC 60.885 55.000 0.00 0.00 42.00 3.20
5323 7319 1.148273 TTGCTTTGTGCCCGTCTCT 59.852 52.632 0.00 0.00 42.00 3.10
5324 7320 1.282875 GTTGCTTTGTGCCCGTCTC 59.717 57.895 0.00 0.00 42.00 3.36
5325 7321 1.034838 TTGTTGCTTTGTGCCCGTCT 61.035 50.000 0.00 0.00 42.00 4.18
5326 7322 0.031994 ATTGTTGCTTTGTGCCCGTC 59.968 50.000 0.00 0.00 42.00 4.79
5413 7409 0.943835 TGACGGACAGCATTGTGACG 60.944 55.000 0.00 0.00 37.76 4.35
5425 7421 4.213482 GGGTAAATTCTGCATATGACGGAC 59.787 45.833 6.97 0.00 0.00 4.79
5426 7422 4.385825 GGGTAAATTCTGCATATGACGGA 58.614 43.478 6.97 5.77 0.00 4.69
5427 7423 3.502211 GGGGTAAATTCTGCATATGACGG 59.498 47.826 6.97 3.32 0.00 4.79
5428 7424 4.133820 TGGGGTAAATTCTGCATATGACG 58.866 43.478 6.97 0.00 0.00 4.35
5458 7454 3.936564 AGAGAAGCTTCCTAGTGCAAAG 58.063 45.455 22.81 0.00 0.00 2.77
5477 7473 3.110705 AGAAGCAAGCATAGGAGGAAGA 58.889 45.455 0.00 0.00 0.00 2.87
5517 7513 2.424956 GGTCAACTCTCATGGCCAAATC 59.575 50.000 10.96 0.00 42.25 2.17
5518 7514 2.042162 AGGTCAACTCTCATGGCCAAAT 59.958 45.455 10.96 0.00 45.17 2.32
5543 7540 2.810274 TCTTTGAGCTGAAGTGTGATGC 59.190 45.455 0.00 0.00 0.00 3.91
5547 7544 3.461061 TGACTCTTTGAGCTGAAGTGTG 58.539 45.455 15.11 4.47 32.73 3.82
5675 7672 5.420104 GTGGAATTCAGAAAATCCATGGTCT 59.580 40.000 19.05 3.99 44.37 3.85
5768 7765 6.599437 CAGTCCACTGGTTTAAATTCTAACG 58.401 40.000 0.00 0.00 40.20 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.