Multiple sequence alignment - TraesCS7B01G175800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G175800 chr7B 100.000 2984 0 0 1 2984 247315730 247312747 0.000000e+00 5511.0
1 TraesCS7B01G175800 chr7D 94.680 2237 88 12 1 2228 267386817 267384603 0.000000e+00 3443.0
2 TraesCS7B01G175800 chr7D 88.731 772 68 8 2230 2984 267384566 267383797 0.000000e+00 926.0
3 TraesCS7B01G175800 chr7D 80.720 389 68 7 1 385 180708291 180708676 2.250000e-76 296.0
4 TraesCS7B01G175800 chr7A 96.276 1638 40 7 608 2228 293303846 293305479 0.000000e+00 2667.0
5 TraesCS7B01G175800 chr7A 87.906 554 50 7 1 551 293303054 293303593 1.170000e-178 636.0
6 TraesCS7B01G175800 chr7A 91.026 390 33 2 2596 2984 293356643 293357031 2.630000e-145 525.0
7 TraesCS7B01G175800 chr7A 86.856 388 36 3 2225 2597 293305749 293306136 1.280000e-113 420.0
8 TraesCS7B01G175800 chr7A 88.350 103 11 1 10 111 677724698 677724596 4.040000e-24 122.0
9 TraesCS7B01G175800 chr3D 82.199 382 60 8 10 387 14789500 14789123 3.710000e-84 322.0
10 TraesCS7B01G175800 chr6B 81.395 387 60 9 1 383 617040920 617041298 3.740000e-79 305.0
11 TraesCS7B01G175800 chr2D 80.407 393 70 7 1 388 613231284 613231674 2.910000e-75 292.0
12 TraesCS7B01G175800 chr2D 88.136 59 4 3 332 389 650460857 650460913 1.920000e-07 67.6
13 TraesCS7B01G175800 chr4D 89.109 101 11 0 10 110 477177598 477177498 3.120000e-25 126.0
14 TraesCS7B01G175800 chr5A 88.350 103 11 1 10 111 619720402 619720300 4.040000e-24 122.0
15 TraesCS7B01G175800 chr1A 86.607 112 14 1 1 111 90806150 90806261 4.040000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G175800 chr7B 247312747 247315730 2983 True 5511.0 5511 100.0000 1 2984 1 chr7B.!!$R1 2983
1 TraesCS7B01G175800 chr7D 267383797 267386817 3020 True 2184.5 3443 91.7055 1 2984 2 chr7D.!!$R1 2983
2 TraesCS7B01G175800 chr7A 293303054 293306136 3082 False 1241.0 2667 90.3460 1 2597 3 chr7A.!!$F2 2596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
574 710 0.53065 CACGAGCATATTGGAGGCGT 60.531 55.0 0.0 0.0 40.72 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2468 2999 0.698818 ATGTGACAAGGGAAGGGGAC 59.301 55.0 0.0 0.0 0.0 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 3.168963 CGAAGCTCGTCATAAAAGTCGA 58.831 45.455 0.00 0.00 34.72 4.20
44 45 4.436242 AGCTCGTCATAAAAGTCGAAGA 57.564 40.909 0.00 0.00 32.12 2.87
58 59 1.415374 CGAAGATGTCGGTTGTTCGT 58.585 50.000 0.00 0.00 46.45 3.85
99 100 3.181479 GCATGTGCCATCATGATTTCTGT 60.181 43.478 5.16 0.00 45.41 3.41
100 101 4.359706 CATGTGCCATCATGATTTCTGTG 58.640 43.478 5.16 0.00 45.41 3.66
101 102 2.164827 TGTGCCATCATGATTTCTGTGC 59.835 45.455 5.16 3.39 0.00 4.57
102 103 2.164827 GTGCCATCATGATTTCTGTGCA 59.835 45.455 5.16 5.88 0.00 4.57
103 104 2.425668 TGCCATCATGATTTCTGTGCAG 59.574 45.455 5.16 0.00 0.00 4.41
104 105 2.798499 GCCATCATGATTTCTGTGCAGC 60.798 50.000 5.16 0.00 0.00 5.25
105 106 2.688446 CCATCATGATTTCTGTGCAGCT 59.312 45.455 5.16 0.00 0.00 4.24
106 107 3.489229 CCATCATGATTTCTGTGCAGCTG 60.489 47.826 10.11 10.11 0.00 4.24
107 108 2.786777 TCATGATTTCTGTGCAGCTGT 58.213 42.857 16.64 0.00 0.00 4.40
108 109 3.151554 TCATGATTTCTGTGCAGCTGTT 58.848 40.909 16.64 0.00 0.00 3.16
130 141 0.880278 CGGGTTGGCGTCTATGATGG 60.880 60.000 0.00 0.00 0.00 3.51
137 148 1.336702 GGCGTCTATGATGGAGCTCTG 60.337 57.143 14.64 0.00 0.00 3.35
153 164 1.893801 CTCTGTGGGTAAGTCGGAGTT 59.106 52.381 3.23 3.23 32.05 3.01
200 211 2.157668 ACGATAACGCTTGCAACTTCTG 59.842 45.455 0.00 0.00 43.96 3.02
217 229 6.097915 ACTTCTGGACGATGTCTTTTCTTA 57.902 37.500 0.00 0.00 32.47 2.10
231 243 7.939782 TGTCTTTTCTTATTTGCAACTCATGA 58.060 30.769 0.00 0.00 0.00 3.07
260 272 3.948719 GGTCAGGTTGGCCGGTGA 61.949 66.667 1.90 0.00 40.50 4.02
285 297 3.358118 CCATATTACGTGGGTTGGGTTT 58.642 45.455 0.00 0.00 32.98 3.27
287 299 4.381079 CCATATTACGTGGGTTGGGTTTTG 60.381 45.833 0.00 0.00 32.98 2.44
291 303 1.737201 GTGGGTTGGGTTTTGTCGG 59.263 57.895 0.00 0.00 0.00 4.79
297 309 3.118847 GGGTTGGGTTTTGTCGGTTTTAA 60.119 43.478 0.00 0.00 0.00 1.52
318 330 9.526713 TTTTAACCTGGTTTTCGTTAATTAACC 57.473 29.630 18.58 10.12 40.31 2.85
320 332 5.062528 ACCTGGTTTTCGTTAATTAACCGA 58.937 37.500 20.08 17.04 42.29 4.69
342 354 7.171678 ACCGAACAATTCTCACTCTTTTCTTAG 59.828 37.037 0.00 0.00 0.00 2.18
356 368 9.136323 ACTCTTTTCTTAGTCAATCAAAATGGT 57.864 29.630 0.00 0.00 0.00 3.55
440 458 5.748592 ACGTTCTTTTCTCGAAAATCCTTG 58.251 37.500 5.39 0.00 39.29 3.61
491 512 6.151691 ACGCTGAAATTTGTACGTTAGTAGA 58.848 36.000 0.00 0.00 32.77 2.59
537 558 5.277154 CCTTTTACTGTAAACCGTGTGTGAG 60.277 44.000 12.27 4.59 0.00 3.51
574 710 0.530650 CACGAGCATATTGGAGGCGT 60.531 55.000 0.00 0.00 40.72 5.68
596 732 9.659830 GGCGTAAACTTAAATGAAATATCGATT 57.340 29.630 1.71 0.00 0.00 3.34
615 832 6.491383 TCGATTAGCCACCTACTATATCCTT 58.509 40.000 0.00 0.00 0.00 3.36
793 1011 1.178276 GTGCTCCGGAGAAGAGAAGA 58.822 55.000 35.69 4.33 0.00 2.87
794 1012 1.754226 GTGCTCCGGAGAAGAGAAGAT 59.246 52.381 35.69 0.00 0.00 2.40
866 1084 2.167075 ACGCCGGTAAACTGCTTATACT 59.833 45.455 1.90 0.00 0.00 2.12
868 1086 3.000925 CGCCGGTAAACTGCTTATACTTG 59.999 47.826 1.90 0.00 0.00 3.16
2016 2246 1.135046 CTTCAGTATCCATGCGAGCG 58.865 55.000 0.00 0.00 0.00 5.03
2022 2252 2.026945 TATCCATGCGAGCGGCTGAA 62.027 55.000 7.50 0.00 44.05 3.02
2051 2281 2.038329 TCGATCCACGGGTTCCCT 59.962 61.111 6.31 0.00 42.82 4.20
2053 2283 2.590092 GATCCACGGGTTCCCTGG 59.410 66.667 15.47 15.47 33.40 4.45
2185 2422 6.016276 GTCATGTGGAAATGTGTCCTAACTTT 60.016 38.462 0.00 0.00 38.62 2.66
2193 2430 9.758651 GGAAATGTGTCCTAACTTTTAAATTGT 57.241 29.630 0.00 0.00 34.56 2.71
2196 2433 7.556733 TGTGTCCTAACTTTTAAATTGTCGT 57.443 32.000 0.00 0.00 0.00 4.34
2228 2465 2.703409 GCAGCGGACAATGCTACG 59.297 61.111 0.00 0.00 41.72 3.51
2259 2775 6.460676 GCTGATGTGAAGAAGATTAATTGGGG 60.461 42.308 0.00 0.00 0.00 4.96
2281 2802 4.517934 CAGCTGGGCCCCATCCTG 62.518 72.222 22.27 15.92 30.82 3.86
2305 2826 2.225343 TGAAATTCATGGGGCCAAGAGT 60.225 45.455 4.39 0.00 0.00 3.24
2318 2839 5.479027 GGGGCCAAGAGTATTTGTTTAGAAA 59.521 40.000 4.39 0.00 0.00 2.52
2334 2855 7.715657 TGTTTAGAAAGTTACGTAGGTCTTCA 58.284 34.615 0.00 0.00 0.00 3.02
2386 2907 3.181487 TGAAGCAGCAGTGTTTTTCCTTC 60.181 43.478 0.00 0.00 0.00 3.46
2395 2916 4.640201 CAGTGTTTTTCCTTCCACTTCTGA 59.360 41.667 0.00 0.00 36.06 3.27
2405 2926 6.778821 TCCTTCCACTTCTGATTTGATACAA 58.221 36.000 0.00 0.00 0.00 2.41
2412 2943 7.102346 CACTTCTGATTTGATACAACCTCTCT 58.898 38.462 0.00 0.00 0.00 3.10
2453 2984 4.042187 AGGTCCATCCATTACTGATTAGCC 59.958 45.833 0.00 0.00 39.02 3.93
2468 2999 7.220030 ACTGATTAGCCTTATGACACCATTAG 58.780 38.462 0.00 0.00 34.31 1.73
2524 3055 1.006102 CTCGGTGTGTCAGACCCAC 60.006 63.158 13.32 7.60 0.00 4.61
2526 3057 2.819550 GGTGTGTCAGACCCACGT 59.180 61.111 7.98 0.00 35.56 4.49
2542 3073 1.267574 ACGTGGAGGATGTGGCTCAT 61.268 55.000 0.94 0.94 39.77 2.90
2578 3109 1.401905 GCCCGAGCAAAAGAAGTATGG 59.598 52.381 0.00 0.00 39.53 2.74
2612 3143 5.647589 AGCTGCATGAAATCATAACACTTG 58.352 37.500 1.02 0.00 34.26 3.16
2615 3146 5.162794 TGCATGAAATCATAACACTTGCAC 58.837 37.500 0.00 0.00 36.96 4.57
2619 3150 4.082841 TGAAATCATAACACTTGCACGCAT 60.083 37.500 0.00 0.00 0.00 4.73
2631 3162 1.581912 CACGCATGCTGCAACGATC 60.582 57.895 27.71 7.44 45.36 3.69
2651 3182 3.878778 TCCAGAGCTAAGATTTTGGAGC 58.121 45.455 0.00 0.00 31.50 4.70
2663 3194 4.574013 AGATTTTGGAGCTTCTTCTATGCG 59.426 41.667 0.00 0.00 33.56 4.73
2675 3206 1.388547 TCTATGCGATTTGGCCAACC 58.611 50.000 20.35 12.36 0.00 3.77
2692 3223 5.244755 GCCAACCAAAAACAATACATGGAT 58.755 37.500 0.00 0.00 35.16 3.41
2705 3236 7.322664 ACAATACATGGATGTGGTTCAAATTC 58.677 34.615 2.38 0.00 41.89 2.17
2706 3237 7.178983 ACAATACATGGATGTGGTTCAAATTCT 59.821 33.333 2.38 0.00 41.89 2.40
2755 3286 2.025887 CCTTTGGTGGTAGAGAAGGCAT 60.026 50.000 0.00 0.00 31.43 4.40
2768 3299 8.314751 GGTAGAGAAGGCATATTGCTAAGAATA 58.685 37.037 0.00 0.00 44.28 1.75
2769 3300 9.883142 GTAGAGAAGGCATATTGCTAAGAATAT 57.117 33.333 0.00 0.00 44.28 1.28
2782 3313 4.274459 GCTAAGAATATGGAGGTGCAACAG 59.726 45.833 3.64 0.00 39.98 3.16
2784 3315 1.678101 GAATATGGAGGTGCAACAGCC 59.322 52.381 3.64 5.48 39.98 4.85
2789 3320 0.035056 GGAGGTGCAACAGCCAGTAT 60.035 55.000 3.64 0.00 39.98 2.12
2794 3325 1.135972 GTGCAACAGCCAGTATGAACG 60.136 52.381 0.00 0.00 35.02 3.95
2795 3326 0.447801 GCAACAGCCAGTATGAACGG 59.552 55.000 0.00 0.00 39.69 4.44
2799 3330 0.537188 CAGCCAGTATGAACGGGACT 59.463 55.000 0.00 0.00 43.05 3.85
2801 3332 0.249398 GCCAGTATGAACGGGACTGT 59.751 55.000 0.00 0.00 43.05 3.55
2803 3334 1.469251 CCAGTATGAACGGGACTGTCG 60.469 57.143 1.07 0.00 43.05 4.35
2832 3363 5.751680 AGCACTAGCATAAAATTATGTGCG 58.248 37.500 13.18 5.89 45.49 5.34
2852 3384 2.783135 GATCAGTTGGCAAACCTCAGA 58.217 47.619 0.00 0.00 36.94 3.27
2860 3392 0.957888 GCAAACCTCAGAGCTCCCAC 60.958 60.000 10.93 0.00 0.00 4.61
2909 3441 1.421268 TGGTCAGCTGGTTCTGAATGT 59.579 47.619 15.13 0.00 43.89 2.71
2929 3461 3.760151 TGTGGATGCATCTTTTTCTGAGG 59.240 43.478 25.28 0.00 0.00 3.86
2949 3481 5.848369 TGAGGAGGAATATTCAGGATCATGT 59.152 40.000 17.07 0.00 0.00 3.21
2951 3483 4.699257 GGAGGAATATTCAGGATCATGTGC 59.301 45.833 17.07 0.00 0.00 4.57
2962 3494 0.461548 ATCATGTGCCGATGTCGTCT 59.538 50.000 1.44 0.00 37.74 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.356135 GAGCTTCGCAAGGGAAATACA 58.644 47.619 1.22 0.00 38.47 2.29
8 9 1.327764 CGAGCTTCGCAAGGGAAATAC 59.672 52.381 1.22 0.00 31.14 1.89
20 21 3.168963 TCGACTTTTATGACGAGCTTCG 58.831 45.455 0.00 0.00 46.93 3.79
41 42 0.865769 GCACGAACAACCGACATCTT 59.134 50.000 0.00 0.00 0.00 2.40
44 45 1.593209 ACGCACGAACAACCGACAT 60.593 52.632 0.00 0.00 0.00 3.06
58 59 2.186160 CAACAGAAGGCCACACGCA 61.186 57.895 5.01 0.00 40.31 5.24
93 94 0.248580 CGCAAACAGCTGCACAGAAA 60.249 50.000 15.27 0.00 42.77 2.52
99 100 2.832661 AACCCGCAAACAGCTGCA 60.833 55.556 15.27 0.00 42.77 4.41
100 101 2.355009 CAACCCGCAAACAGCTGC 60.355 61.111 15.27 0.00 42.61 5.25
101 102 2.336088 CCAACCCGCAAACAGCTG 59.664 61.111 13.48 13.48 42.61 4.24
102 103 3.605664 GCCAACCCGCAAACAGCT 61.606 61.111 0.00 0.00 42.61 4.24
103 104 4.999939 CGCCAACCCGCAAACAGC 63.000 66.667 0.00 0.00 40.87 4.40
104 105 3.536498 GACGCCAACCCGCAAACAG 62.536 63.158 0.00 0.00 0.00 3.16
105 106 2.661840 TAGACGCCAACCCGCAAACA 62.662 55.000 0.00 0.00 0.00 2.83
106 107 1.303091 ATAGACGCCAACCCGCAAAC 61.303 55.000 0.00 0.00 0.00 2.93
107 108 1.003112 ATAGACGCCAACCCGCAAA 60.003 52.632 0.00 0.00 0.00 3.68
108 109 1.743623 CATAGACGCCAACCCGCAA 60.744 57.895 0.00 0.00 0.00 4.85
130 141 0.173708 CCGACTTACCCACAGAGCTC 59.826 60.000 5.27 5.27 0.00 4.09
137 148 0.320697 AGCAACTCCGACTTACCCAC 59.679 55.000 0.00 0.00 0.00 4.61
174 185 2.293677 TGCAAGCGTTATCGTCATCT 57.706 45.000 0.00 0.00 39.49 2.90
200 211 5.938322 TGCAAATAAGAAAAGACATCGTCC 58.062 37.500 0.00 0.00 32.18 4.79
217 229 6.325545 ACCAATATGGATCATGAGTTGCAAAT 59.674 34.615 0.00 0.00 40.96 2.32
231 243 3.373001 CCAACCTGACCACCAATATGGAT 60.373 47.826 2.85 0.00 43.02 3.41
297 309 5.062528 TCGGTTAATTAACGAAAACCAGGT 58.937 37.500 19.48 0.00 41.20 4.00
300 312 6.369059 TGTTCGGTTAATTAACGAAAACCA 57.631 33.333 24.11 18.70 41.20 3.67
310 322 8.842358 AAGAGTGAGAATTGTTCGGTTAATTA 57.158 30.769 0.00 0.00 34.02 1.40
318 330 8.077836 ACTAAGAAAAGAGTGAGAATTGTTCG 57.922 34.615 0.00 0.00 34.02 3.95
320 332 8.964476 TGACTAAGAAAAGAGTGAGAATTGTT 57.036 30.769 0.00 0.00 0.00 2.83
342 354 8.229811 GGCAAAAGAATTACCATTTTGATTGAC 58.770 33.333 12.41 0.00 43.37 3.18
348 360 7.495135 ACAAGGCAAAAGAATTACCATTTTG 57.505 32.000 5.49 5.49 43.48 2.44
358 370 9.665719 TCTTTTCTTAAAACAAGGCAAAAGAAT 57.334 25.926 9.43 0.00 36.13 2.40
359 371 9.495572 TTCTTTTCTTAAAACAAGGCAAAAGAA 57.504 25.926 15.33 15.33 42.11 2.52
360 372 9.495572 TTTCTTTTCTTAAAACAAGGCAAAAGA 57.504 25.926 8.43 8.43 36.87 2.52
363 375 9.225436 ACATTTCTTTTCTTAAAACAAGGCAAA 57.775 25.926 0.00 0.00 0.00 3.68
364 376 8.785329 ACATTTCTTTTCTTAAAACAAGGCAA 57.215 26.923 0.00 0.00 0.00 4.52
491 512 3.152341 CAAATCAGAAGAGCTGTTGGGT 58.848 45.455 0.00 0.00 45.14 4.51
537 558 2.740447 CGTGGAGTAAACAAAGTAGGCC 59.260 50.000 0.00 0.00 0.00 5.19
596 732 6.383147 GCCAATAAGGATATAGTAGGTGGCTA 59.617 42.308 0.00 0.00 43.51 3.93
615 832 1.369692 CGTATCCCGGCTGCCAATA 59.630 57.895 20.29 10.09 0.00 1.90
641 858 5.351465 TCGCCAGTTAAATTTTGAGAGCTAG 59.649 40.000 0.00 0.00 0.00 3.42
848 1066 5.815740 ACATCAAGTATAAGCAGTTTACCGG 59.184 40.000 0.00 0.00 0.00 5.28
866 1084 7.821652 TGTTTCAAGTGAAGTTAACACATCAA 58.178 30.769 8.61 0.00 40.25 2.57
868 1086 8.682128 TTTGTTTCAAGTGAAGTTAACACATC 57.318 30.769 8.61 3.93 40.25 3.06
2016 2246 1.303155 AGTGGAGCAAGCTTCAGCC 60.303 57.895 2.64 0.00 43.38 4.85
2022 2252 1.260538 TGGATCGAGTGGAGCAAGCT 61.261 55.000 0.00 0.00 30.89 3.74
2051 2281 1.651737 ATGGCTACACAGTACACCCA 58.348 50.000 0.00 0.00 0.00 4.51
2053 2283 3.195661 GCTAATGGCTACACAGTACACC 58.804 50.000 0.00 0.00 38.06 4.16
2092 2329 3.303495 CGAGATGGTGAATCGTTACACAC 59.697 47.826 0.00 0.00 40.54 3.82
2185 2422 6.764085 TCCAGTGAGAAAGAACGACAATTTAA 59.236 34.615 0.00 0.00 0.00 1.52
2193 2430 1.686587 TGCTCCAGTGAGAAAGAACGA 59.313 47.619 0.00 0.00 41.42 3.85
2196 2433 1.606480 CGCTGCTCCAGTGAGAAAGAA 60.606 52.381 0.00 0.00 43.78 2.52
2277 2798 2.818921 CCCCATGAATTTCAACCAGGA 58.181 47.619 2.68 0.00 0.00 3.86
2280 2801 1.274712 GGCCCCATGAATTTCAACCA 58.725 50.000 2.68 0.00 0.00 3.67
2281 2802 1.274712 TGGCCCCATGAATTTCAACC 58.725 50.000 0.00 1.75 0.00 3.77
2318 2839 4.342359 AGACCATGAAGACCTACGTAACT 58.658 43.478 0.00 0.00 0.00 2.24
2334 2855 6.842437 ATGCTACATCTACGAATAGACCAT 57.158 37.500 0.00 0.00 40.32 3.55
2366 2887 2.101415 GGAAGGAAAAACACTGCTGCTT 59.899 45.455 0.00 0.00 0.00 3.91
2386 2907 6.176183 AGAGGTTGTATCAAATCAGAAGTGG 58.824 40.000 0.00 0.00 0.00 4.00
2405 2926 6.386927 TCCACCATTGATATGTTTAGAGAGGT 59.613 38.462 0.00 0.00 0.00 3.85
2412 2943 5.192722 TGGACCTCCACCATTGATATGTTTA 59.807 40.000 0.00 0.00 42.01 2.01
2444 2975 7.220030 ACTAATGGTGTCATAAGGCTAATCAG 58.780 38.462 0.00 0.00 32.44 2.90
2453 2984 5.368989 GAAGGGGACTAATGGTGTCATAAG 58.631 45.833 0.00 0.00 42.68 1.73
2468 2999 0.698818 ATGTGACAAGGGAAGGGGAC 59.301 55.000 0.00 0.00 0.00 4.46
2524 3055 0.812811 CATGAGCCACATCCTCCACG 60.813 60.000 0.00 0.00 37.07 4.94
2526 3057 1.225426 GCATGAGCCACATCCTCCA 59.775 57.895 0.00 0.00 37.07 3.86
2542 3073 3.876914 CTCGGGCACATTTAAATAGAGCA 59.123 43.478 15.93 1.45 0.00 4.26
2578 3109 1.449246 ATGCAGCTCAAGGACTCGC 60.449 57.895 0.00 0.00 0.00 5.03
2619 3150 1.742880 GCTCTGGATCGTTGCAGCA 60.743 57.895 9.90 0.00 40.83 4.41
2622 3153 1.824852 TCTTAGCTCTGGATCGTTGCA 59.175 47.619 0.00 0.00 0.00 4.08
2626 3157 4.162320 TCCAAAATCTTAGCTCTGGATCGT 59.838 41.667 0.00 0.00 0.00 3.73
2628 3159 4.514816 GCTCCAAAATCTTAGCTCTGGATC 59.485 45.833 0.00 0.00 32.70 3.36
2631 3162 3.883669 AGCTCCAAAATCTTAGCTCTGG 58.116 45.455 0.00 0.00 41.35 3.86
2651 3182 2.945008 TGGCCAAATCGCATAGAAGAAG 59.055 45.455 0.61 0.00 0.00 2.85
2675 3206 6.927936 TGAACCACATCCATGTATTGTTTTTG 59.072 34.615 0.00 0.00 39.39 2.44
2676 3207 7.060383 TGAACCACATCCATGTATTGTTTTT 57.940 32.000 0.00 0.00 39.39 1.94
2681 3212 7.490079 CAGAATTTGAACCACATCCATGTATTG 59.510 37.037 0.00 0.00 39.39 1.90
2683 3214 6.097270 CCAGAATTTGAACCACATCCATGTAT 59.903 38.462 0.00 0.00 39.39 2.29
2692 3223 4.984295 TCATCTCCAGAATTTGAACCACA 58.016 39.130 0.00 0.00 0.00 4.17
2705 3236 1.420514 AGTGGCCATGATCATCTCCAG 59.579 52.381 20.26 4.70 0.00 3.86
2706 3237 1.514983 AGTGGCCATGATCATCTCCA 58.485 50.000 9.72 17.29 0.00 3.86
2755 3286 6.186420 TGCACCTCCATATTCTTAGCAATA 57.814 37.500 0.00 0.00 0.00 1.90
2768 3299 1.303888 CTGGCTGTTGCACCTCCAT 60.304 57.895 0.00 0.00 41.91 3.41
2769 3300 1.414866 TACTGGCTGTTGCACCTCCA 61.415 55.000 1.31 0.00 41.91 3.86
2782 3313 0.249398 ACAGTCCCGTTCATACTGGC 59.751 55.000 6.65 0.00 43.91 4.85
2784 3315 1.471287 TCGACAGTCCCGTTCATACTG 59.529 52.381 0.00 0.00 44.89 2.74
2789 3320 0.109458 CGAATCGACAGTCCCGTTCA 60.109 55.000 0.00 0.00 0.00 3.18
2794 3325 0.802607 GTGCTCGAATCGACAGTCCC 60.803 60.000 0.00 0.00 0.00 4.46
2795 3326 0.171455 AGTGCTCGAATCGACAGTCC 59.829 55.000 0.00 0.00 0.00 3.85
2799 3330 0.808755 TGCTAGTGCTCGAATCGACA 59.191 50.000 0.00 2.47 40.48 4.35
2801 3332 3.982576 TTATGCTAGTGCTCGAATCGA 57.017 42.857 4.91 4.91 40.48 3.59
2803 3334 8.499162 ACATAATTTTATGCTAGTGCTCGAATC 58.501 33.333 9.65 0.00 43.30 2.52
2832 3363 2.746362 CTCTGAGGTTTGCCAACTGATC 59.254 50.000 0.17 0.00 37.19 2.92
2870 3402 2.626743 CCATTCAATGGCTTCCTCCATC 59.373 50.000 2.63 0.00 45.64 3.51
2909 3441 4.267536 CTCCTCAGAAAAAGATGCATCCA 58.732 43.478 23.06 0.00 0.00 3.41
2929 3461 4.699257 GGCACATGATCCTGAATATTCCTC 59.301 45.833 12.90 5.48 0.00 3.71
2951 3483 1.673400 AGTGATCTCAGACGACATCGG 59.327 52.381 6.21 0.00 44.95 4.18
2962 3494 3.849911 CGAAAGCACCTAAGTGATCTCA 58.150 45.455 0.00 0.00 43.21 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.