Multiple sequence alignment - TraesCS7B01G175300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G175300 chr7B 100.000 3136 0 0 1696 4831 246507845 246504710 0.000000e+00 5792.0
1 TraesCS7B01G175300 chr7B 100.000 1422 0 0 1 1422 246509540 246508119 0.000000e+00 2627.0
2 TraesCS7B01G175300 chr7B 95.629 755 24 4 2681 3433 325847499 325848246 0.000000e+00 1203.0
3 TraesCS7B01G175300 chr7B 96.347 219 8 0 212 430 706059569 706059351 1.280000e-95 361.0
4 TraesCS7B01G175300 chr7B 93.191 235 14 2 197 430 301590869 301591102 1.290000e-90 344.0
5 TraesCS7B01G175300 chr7B 77.830 212 30 13 4274 4477 28938565 28938363 1.100000e-21 115.0
6 TraesCS7B01G175300 chr7B 74.860 179 35 8 4305 4477 718829489 718829663 6.710000e-09 73.1
7 TraesCS7B01G175300 chr7A 91.676 2571 93 46 2263 4805 291801000 291798523 0.000000e+00 3450.0
8 TraesCS7B01G175300 chr7A 86.694 962 44 32 513 1422 291804446 291803517 0.000000e+00 990.0
9 TraesCS7B01G175300 chr7A 90.000 300 8 4 1980 2257 291802964 291802665 7.640000e-98 368.0
10 TraesCS7B01G175300 chr7A 92.337 261 10 6 1712 1969 291803309 291803056 3.550000e-96 363.0
11 TraesCS7B01G175300 chr7A 91.584 202 9 3 23 216 291805894 291805693 6.160000e-69 272.0
12 TraesCS7B01G175300 chr7A 93.333 45 1 2 3885 3928 7584838 7584881 1.120000e-06 65.8
13 TraesCS7B01G175300 chr7D 92.138 1272 37 17 1696 2921 266389564 266388310 0.000000e+00 1736.0
14 TraesCS7B01G175300 chr7D 92.090 1201 31 20 2872 4070 266388259 266387121 0.000000e+00 1633.0
15 TraesCS7B01G175300 chr7D 85.867 1026 61 47 432 1422 266390555 266389579 0.000000e+00 1014.0
16 TraesCS7B01G175300 chr7D 85.915 781 50 22 4069 4831 266386658 266385920 0.000000e+00 778.0
17 TraesCS7B01G175300 chr7D 90.594 202 10 4 23 216 266390751 266390551 4.800000e-65 259.0
18 TraesCS7B01G175300 chr7D 98.000 50 1 0 2872 2921 266388309 266388260 2.400000e-13 87.9
19 TraesCS7B01G175300 chr7D 95.349 43 2 0 3886 3928 18221777 18221819 8.680000e-08 69.4
20 TraesCS7B01G175300 chr5B 96.882 449 12 2 2681 3127 280175623 280176071 0.000000e+00 750.0
21 TraesCS7B01G175300 chr5B 93.333 270 12 2 3164 3433 280176071 280176334 1.260000e-105 394.0
22 TraesCS7B01G175300 chr5B 94.323 229 13 0 205 433 397926585 397926813 7.690000e-93 351.0
23 TraesCS7B01G175300 chr5B 86.667 60 3 5 3885 3941 506317829 506317772 1.450000e-05 62.1
24 TraesCS7B01G175300 chr3B 96.818 220 7 0 212 431 532650640 532650421 7.640000e-98 368.0
25 TraesCS7B01G175300 chr3B 90.625 128 12 0 4704 4831 575710082 575709955 2.310000e-38 171.0
26 TraesCS7B01G175300 chr3B 100.000 29 0 0 3801 3829 31412624 31412596 2.000000e-03 54.7
27 TraesCS7B01G175300 chr5D 95.536 224 10 0 212 435 7044199 7044422 4.600000e-95 359.0
28 TraesCS7B01G175300 chr5D 80.247 162 16 7 4506 4667 3145064 3145209 1.840000e-19 108.0
29 TraesCS7B01G175300 chr3A 94.783 230 11 1 204 433 743838101 743837873 1.650000e-94 357.0
30 TraesCS7B01G175300 chr3A 90.385 52 2 3 3895 3946 613187437 613187485 1.120000e-06 65.8
31 TraesCS7B01G175300 chr1B 94.323 229 13 0 205 433 530867985 530868213 7.690000e-93 351.0
32 TraesCS7B01G175300 chr1B 90.840 131 12 0 4701 4831 338910592 338910722 4.970000e-40 176.0
33 TraesCS7B01G175300 chr2A 93.939 231 13 1 211 440 141901027 141901257 9.950000e-92 348.0
34 TraesCS7B01G175300 chr2A 91.111 45 3 1 3896 3940 413323798 413323755 5.220000e-05 60.2
35 TraesCS7B01G175300 chr4D 92.857 238 15 2 206 443 213305496 213305261 1.290000e-90 344.0
36 TraesCS7B01G175300 chr4D 83.544 237 37 2 3538 3773 4358481 4358246 2.260000e-53 220.0
37 TraesCS7B01G175300 chr4D 96.078 51 2 0 4506 4556 156798799 156798749 3.100000e-12 84.2
38 TraesCS7B01G175300 chr4A 81.550 271 44 6 3506 3773 599321217 599321484 8.140000e-53 219.0
39 TraesCS7B01G175300 chr4A 73.684 190 33 12 4301 4477 140311612 140311427 1.880000e-04 58.4
40 TraesCS7B01G175300 chr4B 81.435 237 42 2 3538 3773 7043826 7043591 4.930000e-45 193.0
41 TraesCS7B01G175300 chr4B 81.481 162 14 7 4506 4667 209175388 209175243 8.490000e-23 119.0
42 TraesCS7B01G175300 chr2B 87.786 131 12 3 4701 4829 489504136 489504264 3.010000e-32 150.0
43 TraesCS7B01G175300 chr2B 100.000 34 0 0 3895 3928 638002712 638002745 4.040000e-06 63.9
44 TraesCS7B01G175300 chr1A 84.800 125 9 3 4551 4667 115744669 115744791 3.050000e-22 117.0
45 TraesCS7B01G175300 chrUn 80.864 162 15 7 4506 4667 171028619 171028474 3.950000e-21 113.0
46 TraesCS7B01G175300 chrUn 80.864 162 15 7 4506 4667 393080707 393080852 3.950000e-21 113.0
47 TraesCS7B01G175300 chrUn 80.247 162 16 6 4506 4667 40096046 40096191 1.840000e-19 108.0
48 TraesCS7B01G175300 chrUn 76.630 184 30 10 4301 4477 48350109 48349932 6.660000e-14 89.8
49 TraesCS7B01G175300 chr3D 95.652 69 3 0 4599 4667 154714152 154714084 1.420000e-20 111.0
50 TraesCS7B01G175300 chr3D 79.054 148 15 6 4506 4653 523884049 523884180 2.400000e-13 87.9
51 TraesCS7B01G175300 chr1D 95.652 69 3 0 4599 4667 141335564 141335632 1.420000e-20 111.0
52 TraesCS7B01G175300 chr1D 95.652 69 3 0 4599 4667 185754153 185754085 1.420000e-20 111.0
53 TraesCS7B01G175300 chr1D 96.078 51 2 0 4506 4556 412230204 412230154 3.100000e-12 84.2
54 TraesCS7B01G175300 chr1D 90.000 50 4 1 3891 3940 351919197 351919245 4.040000e-06 63.9
55 TraesCS7B01G175300 chr6B 100.000 36 0 0 3893 3928 578520424 578520459 3.120000e-07 67.6
56 TraesCS7B01G175300 chr6B 87.097 62 3 4 3867 3923 216677109 216677048 1.120000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G175300 chr7B 246504710 246509540 4830 True 4209.500000 5792 100.000000 1 4831 2 chr7B.!!$R3 4830
1 TraesCS7B01G175300 chr7B 325847499 325848246 747 False 1203.000000 1203 95.629000 2681 3433 1 chr7B.!!$F2 752
2 TraesCS7B01G175300 chr7A 291798523 291805894 7371 True 1088.600000 3450 90.458200 23 4805 5 chr7A.!!$R1 4782
3 TraesCS7B01G175300 chr7D 266385920 266390751 4831 True 917.983333 1736 90.767333 23 4831 6 chr7D.!!$R1 4808
4 TraesCS7B01G175300 chr5B 280175623 280176334 711 False 572.000000 750 95.107500 2681 3433 2 chr5B.!!$F2 752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
952 2153 0.047176 TCTCCTCCTCCCTCTCCTCT 59.953 60.0 0.0 0.0 0.00 3.69 F
1324 2566 0.034380 TTGGAACCCAACGGTCAACA 60.034 50.0 0.0 0.0 43.71 3.33 F
1325 2567 0.034380 TGGAACCCAACGGTCAACAA 60.034 50.0 0.0 0.0 43.71 2.83 F
1326 2568 0.666374 GGAACCCAACGGTCAACAAG 59.334 55.0 0.0 0.0 43.71 3.16 F
3302 6439 0.111446 TGGCGACTTTCCCCATGAAA 59.889 50.0 0.0 0.0 40.64 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1757 3004 0.179234 TTGCACGGAAGGAAGACACA 59.821 50.000 0.0 0.0 0.00 3.72 R
3257 6394 1.270785 CCGATGGCATATACACCAGCA 60.271 52.381 0.0 0.0 42.54 4.41 R
3302 6439 2.396955 CCTCGGCTCGTCGTACAGT 61.397 63.158 0.0 0.0 0.00 3.55 R
3418 6555 9.658799 TTTCATTGGAAAACAAACAGTTGAATA 57.341 25.926 0.0 0.0 43.46 1.75 R
4547 8176 0.400213 TGATTCCCCGCAACAAGAGT 59.600 50.000 0.0 0.0 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.861730 TCACCAGAGGGAGCAGGA 59.138 61.111 0.00 0.00 38.05 3.86
18 19 1.610673 TCACCAGAGGGAGCAGGAC 60.611 63.158 0.00 0.00 38.05 3.85
19 20 2.284995 ACCAGAGGGAGCAGGACC 60.285 66.667 0.00 0.00 38.05 4.46
20 21 2.284921 CCAGAGGGAGCAGGACCA 60.285 66.667 0.00 0.00 35.59 4.02
21 22 1.920325 CCAGAGGGAGCAGGACCAA 60.920 63.158 0.00 0.00 35.59 3.67
44 45 4.081420 AGTCTTGGGTAATGTCTGCAGTAG 60.081 45.833 14.67 0.00 0.00 2.57
122 131 3.323691 TGTCGACAGAATTCTCTCCCAAA 59.676 43.478 15.76 0.00 0.00 3.28
212 221 9.308000 AGAATGGTTAGTGGAAAATGTTTGATA 57.692 29.630 0.00 0.00 0.00 2.15
213 222 9.353999 GAATGGTTAGTGGAAAATGTTTGATAC 57.646 33.333 0.00 0.00 0.00 2.24
214 223 8.650143 ATGGTTAGTGGAAAATGTTTGATACT 57.350 30.769 0.00 0.00 0.00 2.12
215 224 9.747898 ATGGTTAGTGGAAAATGTTTGATACTA 57.252 29.630 0.00 0.00 0.00 1.82
216 225 9.005777 TGGTTAGTGGAAAATGTTTGATACTAC 57.994 33.333 0.00 0.00 0.00 2.73
217 226 8.456471 GGTTAGTGGAAAATGTTTGATACTACC 58.544 37.037 0.00 0.00 0.00 3.18
218 227 9.227777 GTTAGTGGAAAATGTTTGATACTACCT 57.772 33.333 0.00 0.00 0.00 3.08
219 228 7.923414 AGTGGAAAATGTTTGATACTACCTC 57.077 36.000 0.00 0.00 0.00 3.85
220 229 7.690256 AGTGGAAAATGTTTGATACTACCTCT 58.310 34.615 0.00 0.00 0.00 3.69
221 230 7.607991 AGTGGAAAATGTTTGATACTACCTCTG 59.392 37.037 0.00 0.00 0.00 3.35
222 231 7.390718 GTGGAAAATGTTTGATACTACCTCTGT 59.609 37.037 0.00 0.00 0.00 3.41
223 232 7.942341 TGGAAAATGTTTGATACTACCTCTGTT 59.058 33.333 0.00 0.00 0.00 3.16
224 233 8.793592 GGAAAATGTTTGATACTACCTCTGTTT 58.206 33.333 0.00 0.00 0.00 2.83
225 234 9.827411 GAAAATGTTTGATACTACCTCTGTTTC 57.173 33.333 0.00 0.00 0.00 2.78
226 235 8.918202 AAATGTTTGATACTACCTCTGTTTCA 57.082 30.769 0.00 0.00 0.00 2.69
227 236 8.553459 AATGTTTGATACTACCTCTGTTTCAG 57.447 34.615 0.00 0.00 29.90 3.02
228 237 7.062749 TGTTTGATACTACCTCTGTTTCAGT 57.937 36.000 0.00 0.00 32.61 3.41
229 238 7.506114 TGTTTGATACTACCTCTGTTTCAGTT 58.494 34.615 0.00 0.00 32.61 3.16
230 239 7.990886 TGTTTGATACTACCTCTGTTTCAGTTT 59.009 33.333 0.00 0.00 32.61 2.66
231 240 9.485206 GTTTGATACTACCTCTGTTTCAGTTTA 57.515 33.333 0.00 0.00 32.61 2.01
232 241 9.485206 TTTGATACTACCTCTGTTTCAGTTTAC 57.515 33.333 0.00 0.00 32.61 2.01
233 242 8.185506 TGATACTACCTCTGTTTCAGTTTACA 57.814 34.615 0.00 0.00 32.61 2.41
234 243 8.644216 TGATACTACCTCTGTTTCAGTTTACAA 58.356 33.333 0.00 0.00 32.61 2.41
235 244 9.141400 GATACTACCTCTGTTTCAGTTTACAAG 57.859 37.037 0.00 0.00 32.61 3.16
236 245 6.885922 ACTACCTCTGTTTCAGTTTACAAGT 58.114 36.000 0.00 0.00 32.61 3.16
237 246 6.985059 ACTACCTCTGTTTCAGTTTACAAGTC 59.015 38.462 0.00 0.00 32.61 3.01
238 247 5.123936 ACCTCTGTTTCAGTTTACAAGTCC 58.876 41.667 0.00 0.00 32.61 3.85
239 248 5.104485 ACCTCTGTTTCAGTTTACAAGTCCT 60.104 40.000 0.00 0.00 32.61 3.85
240 249 5.237344 CCTCTGTTTCAGTTTACAAGTCCTG 59.763 44.000 0.00 0.00 32.61 3.86
241 250 4.574828 TCTGTTTCAGTTTACAAGTCCTGC 59.425 41.667 0.00 0.00 32.61 4.85
242 251 3.311322 TGTTTCAGTTTACAAGTCCTGCG 59.689 43.478 0.00 0.00 0.00 5.18
243 252 1.508632 TCAGTTTACAAGTCCTGCGC 58.491 50.000 0.00 0.00 0.00 6.09
244 253 0.163788 CAGTTTACAAGTCCTGCGCG 59.836 55.000 0.00 0.00 0.00 6.86
245 254 0.249741 AGTTTACAAGTCCTGCGCGT 60.250 50.000 8.43 0.00 0.00 6.01
246 255 1.000060 AGTTTACAAGTCCTGCGCGTA 60.000 47.619 8.43 0.71 0.00 4.42
247 256 1.997606 GTTTACAAGTCCTGCGCGTAT 59.002 47.619 8.43 0.00 0.00 3.06
248 257 3.119388 AGTTTACAAGTCCTGCGCGTATA 60.119 43.478 8.43 0.00 0.00 1.47
249 258 3.720949 TTACAAGTCCTGCGCGTATAT 57.279 42.857 8.43 0.00 0.00 0.86
250 259 2.135664 ACAAGTCCTGCGCGTATATC 57.864 50.000 8.43 0.00 0.00 1.63
251 260 1.681793 ACAAGTCCTGCGCGTATATCT 59.318 47.619 8.43 0.00 0.00 1.98
252 261 2.882761 ACAAGTCCTGCGCGTATATCTA 59.117 45.455 8.43 0.00 0.00 1.98
253 262 3.058155 ACAAGTCCTGCGCGTATATCTAG 60.058 47.826 8.43 0.00 0.00 2.43
254 263 2.085320 AGTCCTGCGCGTATATCTAGG 58.915 52.381 8.43 0.52 0.00 3.02
255 264 1.811359 GTCCTGCGCGTATATCTAGGT 59.189 52.381 8.43 0.00 0.00 3.08
256 265 2.228343 GTCCTGCGCGTATATCTAGGTT 59.772 50.000 8.43 0.00 0.00 3.50
257 266 2.228103 TCCTGCGCGTATATCTAGGTTG 59.772 50.000 8.43 0.00 0.00 3.77
258 267 2.030185 CCTGCGCGTATATCTAGGTTGT 60.030 50.000 8.43 0.00 0.00 3.32
259 268 3.235195 CTGCGCGTATATCTAGGTTGTC 58.765 50.000 8.43 0.00 0.00 3.18
260 269 2.619646 TGCGCGTATATCTAGGTTGTCA 59.380 45.455 8.43 0.00 0.00 3.58
261 270 3.067040 TGCGCGTATATCTAGGTTGTCAA 59.933 43.478 8.43 0.00 0.00 3.18
262 271 4.235360 GCGCGTATATCTAGGTTGTCAAT 58.765 43.478 8.43 0.00 0.00 2.57
263 272 4.684703 GCGCGTATATCTAGGTTGTCAATT 59.315 41.667 8.43 0.00 0.00 2.32
264 273 5.176958 GCGCGTATATCTAGGTTGTCAATTT 59.823 40.000 8.43 0.00 0.00 1.82
265 274 6.292703 GCGCGTATATCTAGGTTGTCAATTTT 60.293 38.462 8.43 0.00 0.00 1.82
266 275 7.095940 GCGCGTATATCTAGGTTGTCAATTTTA 60.096 37.037 8.43 0.00 0.00 1.52
267 276 8.922676 CGCGTATATCTAGGTTGTCAATTTTAT 58.077 33.333 0.00 0.00 0.00 1.40
381 390 9.874205 ATGATTTGTATTAGGTTGGTCAAATTG 57.126 29.630 0.00 0.00 36.22 2.32
382 391 9.083422 TGATTTGTATTAGGTTGGTCAAATTGA 57.917 29.630 0.00 0.00 36.22 2.57
383 392 9.353999 GATTTGTATTAGGTTGGTCAAATTGAC 57.646 33.333 17.16 17.16 46.23 3.18
393 402 2.629051 GTCAAATTGACGACCTAGGGG 58.371 52.381 14.81 7.16 37.67 4.79
394 403 2.027469 GTCAAATTGACGACCTAGGGGT 60.027 50.000 14.81 10.74 42.37 4.95
395 404 3.196254 GTCAAATTGACGACCTAGGGGTA 59.804 47.826 14.81 0.00 40.90 3.69
396 405 4.916984 GTCAAATTGACGACCTAGGGGTAC 60.917 50.000 14.81 2.61 40.90 3.34
410 419 4.781959 GTACGCGCACGCCCTGTA 62.782 66.667 5.73 3.39 45.53 2.74
411 420 4.053526 TACGCGCACGCCCTGTAA 62.054 61.111 5.73 0.00 45.53 2.41
412 421 3.570621 TACGCGCACGCCCTGTAAA 62.571 57.895 5.73 0.00 45.53 2.01
413 422 4.439472 CGCGCACGCCCTGTAAAC 62.439 66.667 8.75 0.00 37.98 2.01
414 423 3.047877 GCGCACGCCCTGTAAACT 61.048 61.111 0.30 0.00 34.56 2.66
415 424 2.860293 CGCACGCCCTGTAAACTG 59.140 61.111 0.00 0.00 0.00 3.16
416 425 1.666553 CGCACGCCCTGTAAACTGA 60.667 57.895 0.00 0.00 0.00 3.41
417 426 1.225376 CGCACGCCCTGTAAACTGAA 61.225 55.000 0.00 0.00 0.00 3.02
418 427 0.948678 GCACGCCCTGTAAACTGAAA 59.051 50.000 0.00 0.00 0.00 2.69
419 428 1.069227 GCACGCCCTGTAAACTGAAAG 60.069 52.381 0.00 0.00 42.29 2.62
420 429 2.489971 CACGCCCTGTAAACTGAAAGA 58.510 47.619 0.00 0.00 37.43 2.52
421 430 2.480419 CACGCCCTGTAAACTGAAAGAG 59.520 50.000 0.00 0.00 37.43 2.85
422 431 2.367567 ACGCCCTGTAAACTGAAAGAGA 59.632 45.455 0.00 0.00 37.43 3.10
423 432 2.996621 CGCCCTGTAAACTGAAAGAGAG 59.003 50.000 0.00 0.00 37.43 3.20
424 433 3.339141 GCCCTGTAAACTGAAAGAGAGG 58.661 50.000 0.00 0.00 37.43 3.69
425 434 3.244596 GCCCTGTAAACTGAAAGAGAGGT 60.245 47.826 0.00 0.00 37.43 3.85
426 435 4.020485 GCCCTGTAAACTGAAAGAGAGGTA 60.020 45.833 0.00 0.00 37.43 3.08
427 436 5.725362 CCCTGTAAACTGAAAGAGAGGTAG 58.275 45.833 0.00 0.00 37.43 3.18
428 437 5.246429 CCCTGTAAACTGAAAGAGAGGTAGT 59.754 44.000 0.00 0.00 37.43 2.73
429 438 6.436532 CCCTGTAAACTGAAAGAGAGGTAGTA 59.563 42.308 0.00 0.00 37.43 1.82
430 439 7.314393 CCTGTAAACTGAAAGAGAGGTAGTAC 58.686 42.308 0.00 0.00 37.43 2.73
431 440 7.177041 CCTGTAAACTGAAAGAGAGGTAGTACT 59.823 40.741 0.00 0.00 37.43 2.73
511 520 3.112126 GATGCATTGGTCACCGGCG 62.112 63.158 0.00 0.00 0.00 6.46
580 1761 2.033372 TGACCAAGTGTAGACGGACAA 58.967 47.619 0.00 0.00 0.00 3.18
595 1776 2.678190 CGGACAAGGAAGGTGGAATCTC 60.678 54.545 0.00 0.00 0.00 2.75
598 1779 3.517500 GACAAGGAAGGTGGAATCTCTCT 59.482 47.826 0.00 0.00 0.00 3.10
623 1804 2.018727 TTAGCCGTCGGTGTGTGTGT 62.019 55.000 13.94 0.00 0.00 3.72
624 1805 2.018727 TAGCCGTCGGTGTGTGTGTT 62.019 55.000 13.94 0.00 0.00 3.32
625 1806 2.877974 GCCGTCGGTGTGTGTGTTC 61.878 63.158 13.94 0.00 0.00 3.18
626 1807 2.241880 CCGTCGGTGTGTGTGTTCC 61.242 63.158 2.08 0.00 0.00 3.62
644 1825 5.579904 GTGTTCCTTCCTTTTCTATCGGTAC 59.420 44.000 0.00 0.00 0.00 3.34
649 1830 8.081517 TCCTTCCTTTTCTATCGGTACAATAA 57.918 34.615 0.00 0.00 0.00 1.40
650 1831 8.711170 TCCTTCCTTTTCTATCGGTACAATAAT 58.289 33.333 0.00 0.00 0.00 1.28
651 1832 8.774586 CCTTCCTTTTCTATCGGTACAATAATG 58.225 37.037 0.00 0.00 0.00 1.90
699 1884 0.818296 GGAGGCCGATATGATAGCGT 59.182 55.000 9.36 0.00 35.51 5.07
740 1930 3.868661 GGTTTGCATTCCGTTTCTGTTTT 59.131 39.130 0.00 0.00 0.00 2.43
764 1954 3.703001 TCCTCCCTGTTGTTCATTCTC 57.297 47.619 0.00 0.00 0.00 2.87
769 1959 1.197721 CCTGTTGTTCATTCTCGTGGC 59.802 52.381 0.00 0.00 0.00 5.01
779 1969 3.392431 CTCGTGGCGAGCTCATTG 58.608 61.111 15.40 0.00 46.75 2.82
800 1990 2.515996 TTAGCCGCCACCGAGGAAAG 62.516 60.000 0.00 0.00 41.22 2.62
952 2153 0.047176 TCTCCTCCTCCCTCTCCTCT 59.953 60.000 0.00 0.00 0.00 3.69
955 2156 1.620259 CTCCTCCCTCTCCTCTGCT 59.380 63.158 0.00 0.00 0.00 4.24
966 2167 0.608640 TCCTCTGCTCTTCCGTTTCC 59.391 55.000 0.00 0.00 0.00 3.13
1008 2222 4.222847 GTCGGGGAGATGGCGTCC 62.223 72.222 2.37 0.00 0.00 4.79
1041 2255 2.438975 TACGTCATCCTCGGCGGT 60.439 61.111 7.21 0.00 0.00 5.68
1073 2287 0.547553 GTCCGTACTCTCCTCCCTCT 59.452 60.000 0.00 0.00 0.00 3.69
1074 2288 0.838608 TCCGTACTCTCCTCCCTCTC 59.161 60.000 0.00 0.00 0.00 3.20
1075 2289 0.179012 CCGTACTCTCCTCCCTCTCC 60.179 65.000 0.00 0.00 0.00 3.71
1076 2290 0.179012 CGTACTCTCCTCCCTCTCCC 60.179 65.000 0.00 0.00 0.00 4.30
1077 2291 1.228190 GTACTCTCCTCCCTCTCCCT 58.772 60.000 0.00 0.00 0.00 4.20
1078 2292 1.144298 GTACTCTCCTCCCTCTCCCTC 59.856 61.905 0.00 0.00 0.00 4.30
1098 2312 1.173043 CGAGTCTCTGCTTCCTGTCT 58.827 55.000 0.00 0.00 0.00 3.41
1099 2313 1.135431 CGAGTCTCTGCTTCCTGTCTG 60.135 57.143 0.00 0.00 0.00 3.51
1100 2314 1.892474 GAGTCTCTGCTTCCTGTCTGT 59.108 52.381 0.00 0.00 0.00 3.41
1101 2315 1.892474 AGTCTCTGCTTCCTGTCTGTC 59.108 52.381 0.00 0.00 0.00 3.51
1102 2316 0.884514 TCTCTGCTTCCTGTCTGTCG 59.115 55.000 0.00 0.00 0.00 4.35
1225 2445 1.139654 CTCGCCATCATCTCCAAGGAA 59.860 52.381 0.00 0.00 0.00 3.36
1294 2529 5.722021 ATCATTTCTACCCCAAAACACAC 57.278 39.130 0.00 0.00 0.00 3.82
1298 2533 5.941555 TTTCTACCCCAAAACACACAAAT 57.058 34.783 0.00 0.00 0.00 2.32
1299 2534 5.941555 TTCTACCCCAAAACACACAAATT 57.058 34.783 0.00 0.00 0.00 1.82
1300 2535 5.941555 TCTACCCCAAAACACACAAATTT 57.058 34.783 0.00 0.00 0.00 1.82
1301 2536 5.908341 TCTACCCCAAAACACACAAATTTC 58.092 37.500 0.00 0.00 0.00 2.17
1305 2540 6.007076 ACCCCAAAACACACAAATTTCTTTT 58.993 32.000 0.00 0.00 0.00 2.27
1306 2541 6.491745 ACCCCAAAACACACAAATTTCTTTTT 59.508 30.769 0.00 0.00 0.00 1.94
1308 2543 6.805760 CCCAAAACACACAAATTTCTTTTTGG 59.194 34.615 19.63 19.63 45.78 3.28
1311 2546 8.900762 CAAAACACACAAATTTCTTTTTGGAAC 58.099 29.630 0.00 0.00 40.20 3.62
1312 2547 6.735678 ACACACAAATTTCTTTTTGGAACC 57.264 33.333 0.00 0.00 40.20 3.62
1324 2566 0.034380 TTGGAACCCAACGGTCAACA 60.034 50.000 0.00 0.00 43.71 3.33
1325 2567 0.034380 TGGAACCCAACGGTCAACAA 60.034 50.000 0.00 0.00 43.71 2.83
1326 2568 0.666374 GGAACCCAACGGTCAACAAG 59.334 55.000 0.00 0.00 43.71 3.16
1327 2569 0.666374 GAACCCAACGGTCAACAAGG 59.334 55.000 0.00 0.00 43.71 3.61
1328 2570 0.753848 AACCCAACGGTCAACAAGGG 60.754 55.000 0.00 0.00 43.71 3.95
1756 3003 2.159960 GCTTGTCGCTCAACTCTAAACG 60.160 50.000 0.00 0.00 35.14 3.60
1757 3004 2.787601 TGTCGCTCAACTCTAAACGT 57.212 45.000 0.00 0.00 0.00 3.99
1867 3114 1.534163 GGTACACGGAAAAAGGTGAGC 59.466 52.381 0.00 0.00 37.58 4.26
1958 3206 8.018677 ACTACGTGATGATTAGTCAAACAAAG 57.981 34.615 0.00 0.00 38.01 2.77
1960 3208 4.783036 CGTGATGATTAGTCAAACAAAGCG 59.217 41.667 0.00 0.00 38.01 4.68
2018 3348 6.973474 AGCATGTCTCGAGTTTATGTTACTAC 59.027 38.462 13.13 0.00 0.00 2.73
2047 3402 2.161211 CAGCTTAGGCAGAAAAGAGCAC 59.839 50.000 0.00 0.00 41.70 4.40
2071 3426 7.329717 CACCTAGTGTGTTCTCTGTAAGATTTC 59.670 40.741 3.86 0.00 40.66 2.17
2086 3449 3.072944 AGATTTCTGAGCAAGTGTCTGC 58.927 45.455 0.00 0.00 42.97 4.26
2114 3477 2.852449 CATTGAGCTGATCCTGAGCAT 58.148 47.619 6.33 0.00 39.05 3.79
2162 3525 2.497138 CAAGACATTGACCAGTGCAGA 58.503 47.619 0.00 0.00 38.83 4.26
2280 5303 2.418628 GCTTGCGCTATTGGTACTGAAA 59.581 45.455 9.73 0.00 0.00 2.69
2281 5304 3.119990 GCTTGCGCTATTGGTACTGAAAA 60.120 43.478 9.73 0.00 0.00 2.29
2322 5345 3.768406 CCGAGTCAGTCTTCTCTTCATG 58.232 50.000 0.00 0.00 0.00 3.07
2336 5359 7.609146 TCTTCTCTTCATGAAATATGTGCACTT 59.391 33.333 19.41 14.68 0.00 3.16
2348 5371 9.655769 GAAATATGTGCACTTATTGTATCTGTG 57.344 33.333 28.67 0.00 0.00 3.66
2725 5762 1.114119 TGCCATCTTTTGCAGTGCCA 61.114 50.000 13.72 0.00 32.77 4.92
3075 6212 4.511826 GTGGACTCAAGGTTAGTTTCACTG 59.488 45.833 0.00 0.00 33.00 3.66
3162 6299 7.338710 ACCTAATTAGCAACTGTACACATCAT 58.661 34.615 6.99 0.00 0.00 2.45
3167 6304 4.549458 AGCAACTGTACACATCATTTTGC 58.451 39.130 0.00 0.00 35.65 3.68
3205 6342 3.305335 CGCTGCCTTAAGGTTTGACATTT 60.305 43.478 22.55 0.00 37.57 2.32
3257 6394 3.064820 ACACATTCTTCGAAACAAGCGTT 59.935 39.130 0.00 0.00 36.73 4.84
3302 6439 0.111446 TGGCGACTTTCCCCATGAAA 59.889 50.000 0.00 0.00 40.64 2.69
3418 6555 1.187567 ACAAACCCGGTAGCGGTAGT 61.188 55.000 29.86 19.47 31.69 2.73
3439 6576 8.192110 GGTAGTATTCAACTGTTTGTTTTCCAA 58.808 33.333 0.00 0.00 39.39 3.53
3453 6590 9.050601 GTTTGTTTTCCAATGAAATTCCACATA 57.949 29.630 0.00 0.00 40.08 2.29
3454 6591 8.600449 TTGTTTTCCAATGAAATTCCACATAC 57.400 30.769 0.00 0.00 40.08 2.39
3455 6592 7.730084 TGTTTTCCAATGAAATTCCACATACA 58.270 30.769 0.00 0.00 40.08 2.29
3456 6593 8.373981 TGTTTTCCAATGAAATTCCACATACAT 58.626 29.630 0.00 0.00 40.08 2.29
3457 6594 8.658609 GTTTTCCAATGAAATTCCACATACATG 58.341 33.333 0.00 0.00 40.08 3.21
3458 6595 7.715266 TTCCAATGAAATTCCACATACATGA 57.285 32.000 0.00 0.00 31.22 3.07
3460 6597 7.944061 TCCAATGAAATTCCACATACATGATC 58.056 34.615 0.00 0.00 31.22 2.92
3461 6598 7.781219 TCCAATGAAATTCCACATACATGATCT 59.219 33.333 0.00 0.00 31.22 2.75
3462 6599 7.865889 CCAATGAAATTCCACATACATGATCTG 59.134 37.037 0.00 0.00 31.22 2.90
3463 6600 8.410912 CAATGAAATTCCACATACATGATCTGT 58.589 33.333 0.00 0.00 36.67 3.41
3466 6603 7.281549 TGAAATTCCACATACATGATCTGTCAG 59.718 37.037 0.00 0.00 39.39 3.51
3467 6604 5.937975 TTCCACATACATGATCTGTCAGA 57.062 39.130 4.68 4.68 39.39 3.27
3468 6605 5.937975 TCCACATACATGATCTGTCAGAA 57.062 39.130 6.64 0.00 39.39 3.02
3470 6607 4.510711 CCACATACATGATCTGTCAGAAGC 59.489 45.833 6.64 2.97 39.39 3.86
3471 6608 5.358090 CACATACATGATCTGTCAGAAGCT 58.642 41.667 6.64 0.00 39.39 3.74
3472 6609 5.816258 CACATACATGATCTGTCAGAAGCTT 59.184 40.000 6.64 0.00 39.39 3.74
3473 6610 5.816258 ACATACATGATCTGTCAGAAGCTTG 59.184 40.000 2.10 12.13 39.39 4.01
3474 6611 4.548451 ACATGATCTGTCAGAAGCTTGA 57.452 40.909 19.80 0.00 37.87 3.02
3475 6612 4.252073 ACATGATCTGTCAGAAGCTTGAC 58.748 43.478 19.80 7.77 46.02 3.18
3484 6621 5.869753 GTCAGAAGCTTGACATGTACAAT 57.130 39.130 2.10 0.00 45.32 2.71
3485 6622 6.246420 GTCAGAAGCTTGACATGTACAATT 57.754 37.500 2.10 0.00 45.32 2.32
3486 6623 6.082338 GTCAGAAGCTTGACATGTACAATTG 58.918 40.000 2.10 3.24 45.32 2.32
3487 6624 5.764686 TCAGAAGCTTGACATGTACAATTGT 59.235 36.000 16.68 16.68 0.00 2.71
3536 6673 2.035940 AAGGAGTCCGGCGAGTCT 59.964 61.111 9.30 2.94 38.36 3.24
3572 6709 2.162264 ACCTGCCCTACTTCTACTCC 57.838 55.000 0.00 0.00 0.00 3.85
3845 6982 8.231007 ACCAAGATCTGAAGATTCCTCTATCTA 58.769 37.037 0.00 0.00 33.81 1.98
3893 7033 2.515523 CCCTGCCGATGCTTCCTG 60.516 66.667 0.00 0.00 38.71 3.86
3894 7034 3.207669 CCTGCCGATGCTTCCTGC 61.208 66.667 0.00 0.00 43.25 4.85
3895 7035 2.124819 CTGCCGATGCTTCCTGCT 60.125 61.111 9.30 0.00 43.37 4.24
3896 7036 1.144716 CTGCCGATGCTTCCTGCTA 59.855 57.895 9.30 0.00 43.37 3.49
3897 7037 1.153369 TGCCGATGCTTCCTGCTAC 60.153 57.895 9.30 0.00 43.37 3.58
3898 7038 1.144936 GCCGATGCTTCCTGCTACT 59.855 57.895 0.00 0.00 43.37 2.57
3899 7039 0.878086 GCCGATGCTTCCTGCTACTC 60.878 60.000 0.00 0.00 43.37 2.59
3900 7040 0.249657 CCGATGCTTCCTGCTACTCC 60.250 60.000 0.00 0.00 43.37 3.85
3901 7041 0.249657 CGATGCTTCCTGCTACTCCC 60.250 60.000 0.00 0.00 43.37 4.30
3902 7042 1.127343 GATGCTTCCTGCTACTCCCT 58.873 55.000 0.00 0.00 43.37 4.20
3903 7043 1.069978 GATGCTTCCTGCTACTCCCTC 59.930 57.143 0.00 0.00 43.37 4.30
3904 7044 0.978146 TGCTTCCTGCTACTCCCTCC 60.978 60.000 0.00 0.00 43.37 4.30
3905 7045 2.022240 GCTTCCTGCTACTCCCTCCG 62.022 65.000 0.00 0.00 38.95 4.63
3906 7046 0.684805 CTTCCTGCTACTCCCTCCGT 60.685 60.000 0.00 0.00 0.00 4.69
3907 7047 0.252103 TTCCTGCTACTCCCTCCGTT 60.252 55.000 0.00 0.00 0.00 4.44
3908 7048 0.683504 TCCTGCTACTCCCTCCGTTC 60.684 60.000 0.00 0.00 0.00 3.95
3909 7049 1.677637 CCTGCTACTCCCTCCGTTCC 61.678 65.000 0.00 0.00 0.00 3.62
3910 7050 0.970937 CTGCTACTCCCTCCGTTCCA 60.971 60.000 0.00 0.00 0.00 3.53
3911 7051 0.543410 TGCTACTCCCTCCGTTCCAA 60.543 55.000 0.00 0.00 0.00 3.53
3912 7052 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
3913 7053 1.209747 GCTACTCCCTCCGTTCCAAAT 59.790 52.381 0.00 0.00 0.00 2.32
3914 7054 2.355818 GCTACTCCCTCCGTTCCAAATT 60.356 50.000 0.00 0.00 0.00 1.82
3915 7055 3.118519 GCTACTCCCTCCGTTCCAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
3916 7056 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
3917 7057 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
3918 7058 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
3919 7059 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
3920 7060 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
3921 7061 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
3922 7062 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
4009 7149 6.772716 ACCACTATGGCAGAATTCGAATAAAT 59.227 34.615 11.83 0.00 42.67 1.40
4010 7150 7.285401 ACCACTATGGCAGAATTCGAATAAATT 59.715 33.333 11.83 0.00 42.67 1.82
4011 7151 8.137437 CCACTATGGCAGAATTCGAATAAATTT 58.863 33.333 11.83 0.00 0.00 1.82
4012 7152 8.961092 CACTATGGCAGAATTCGAATAAATTTG 58.039 33.333 11.83 2.87 0.00 2.32
4087 7691 1.131126 CTAGTTGGCAAGGCGTGATTG 59.869 52.381 4.11 0.00 0.00 2.67
4134 7739 1.821136 CAAGATCAAAGGGAACTGGGC 59.179 52.381 0.00 0.00 42.68 5.36
4188 7793 9.974980 TTCTTGGTGGATTTTAGTTGAAAATAC 57.025 29.630 0.00 0.00 45.80 1.89
4215 7836 2.736670 AATTCCACCATCTGTAGGCC 57.263 50.000 0.00 0.00 0.00 5.19
4237 7858 5.393962 CCGAACTTTATCAAGCAGAAAAGG 58.606 41.667 13.11 0.00 32.98 3.11
4257 7878 0.825010 AGCAAGGCCTGGACAAGTTG 60.825 55.000 12.85 1.08 0.00 3.16
4284 7905 1.134461 CATAGCAAGCACTCTGAGGCT 60.134 52.381 9.85 11.62 43.46 4.58
4444 8066 3.256136 TGGTTTTATTTACCAAGCACCCG 59.744 43.478 0.00 0.00 42.50 5.28
4463 8086 0.326927 GCACCCCTAAGTACCTTGCA 59.673 55.000 0.00 0.00 0.00 4.08
4496 8120 4.036852 GCCTGAAAGTGCAGAGTAAAAAGT 59.963 41.667 0.00 0.00 38.14 2.66
4497 8121 5.514279 CCTGAAAGTGCAGAGTAAAAAGTG 58.486 41.667 0.00 0.00 38.14 3.16
4498 8122 5.296780 CCTGAAAGTGCAGAGTAAAAAGTGA 59.703 40.000 0.00 0.00 38.14 3.41
4501 8125 7.027161 TGAAAGTGCAGAGTAAAAAGTGAAAC 58.973 34.615 0.00 0.00 0.00 2.78
4526 8155 3.830744 TCGTGTCTTCTTCCTTTCCAA 57.169 42.857 0.00 0.00 0.00 3.53
4547 8176 0.322456 CTTGTTGCGGGGAATCTGGA 60.322 55.000 0.00 0.00 0.00 3.86
4569 8198 0.609131 CTTGTTGCGGGGAATCAGGT 60.609 55.000 0.00 0.00 0.00 4.00
4570 8199 0.178975 TTGTTGCGGGGAATCAGGTT 60.179 50.000 0.00 0.00 0.00 3.50
4571 8200 0.608035 TGTTGCGGGGAATCAGGTTC 60.608 55.000 0.00 0.00 36.04 3.62
4611 8241 0.683973 CTGCTAGAATGAGGCCCGAT 59.316 55.000 0.00 0.00 0.00 4.18
4633 8263 6.369065 CGATGGTCTTAATTCCTAATGCTACC 59.631 42.308 0.00 0.00 0.00 3.18
4698 8328 6.753279 CAGTGGAATGGTATTTGTATTTGCAG 59.247 38.462 0.00 0.00 0.00 4.41
4725 8355 2.028130 AGGAAGCTCGGTGACAGATAG 58.972 52.381 0.00 0.00 0.00 2.08
4740 8370 5.188163 TGACAGATAGACCGGGATTTAACAA 59.812 40.000 6.32 0.00 0.00 2.83
4741 8371 5.425630 ACAGATAGACCGGGATTTAACAAC 58.574 41.667 6.32 0.00 0.00 3.32
4752 8382 6.238925 CCGGGATTTAACAACAAGAAGAAAGT 60.239 38.462 0.00 0.00 0.00 2.66
4767 8397 9.569167 CAAGAAGAAAGTAATCATAGTACACGA 57.431 33.333 0.00 0.00 0.00 4.35
4776 8406 6.505044 AATCATAGTACACGACACACACTA 57.495 37.500 0.00 0.00 0.00 2.74
4824 8454 4.451900 ACCAACACAGGTTCAAGAGTAAG 58.548 43.478 0.00 0.00 39.34 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.610673 GTCCTGCTCCCTCTGGTGA 60.611 63.158 0.00 0.00 0.00 4.02
1 2 2.664081 GGTCCTGCTCCCTCTGGTG 61.664 68.421 0.00 0.00 0.00 4.17
2 3 2.284995 GGTCCTGCTCCCTCTGGT 60.285 66.667 0.00 0.00 0.00 4.00
3 4 1.908340 CTTGGTCCTGCTCCCTCTGG 61.908 65.000 0.00 0.00 0.00 3.86
4 5 1.197430 ACTTGGTCCTGCTCCCTCTG 61.197 60.000 0.00 0.00 0.00 3.35
5 6 0.907230 GACTTGGTCCTGCTCCCTCT 60.907 60.000 0.00 0.00 0.00 3.69
6 7 0.907230 AGACTTGGTCCTGCTCCCTC 60.907 60.000 0.00 0.00 32.18 4.30
7 8 0.474660 AAGACTTGGTCCTGCTCCCT 60.475 55.000 0.00 0.00 32.18 4.20
8 9 0.322008 CAAGACTTGGTCCTGCTCCC 60.322 60.000 7.35 0.00 32.18 4.30
9 10 0.322008 CCAAGACTTGGTCCTGCTCC 60.322 60.000 23.92 0.00 45.93 4.70
10 11 3.239861 CCAAGACTTGGTCCTGCTC 57.760 57.895 23.92 0.00 45.93 4.26
19 20 3.411446 TGCAGACATTACCCAAGACTTG 58.589 45.455 8.31 8.31 0.00 3.16
20 21 3.073062 ACTGCAGACATTACCCAAGACTT 59.927 43.478 23.35 0.00 0.00 3.01
21 22 2.639839 ACTGCAGACATTACCCAAGACT 59.360 45.455 23.35 0.00 0.00 3.24
44 45 1.000955 TCTCGTTCAAAGGCTCACTCC 59.999 52.381 0.00 0.00 0.00 3.85
113 122 3.721021 TCCCCTACTAACTTTGGGAGAG 58.279 50.000 0.00 0.00 40.33 3.20
122 131 5.339477 TCTGTTAGCTTTCCCCTACTAACT 58.661 41.667 11.67 0.00 43.07 2.24
171 180 6.824305 AACCATTCTCATCAAGTTACAAGG 57.176 37.500 0.00 0.00 0.00 3.61
212 221 6.885922 ACTTGTAAACTGAAACAGAGGTAGT 58.114 36.000 5.76 0.00 35.18 2.73
213 222 6.424207 GGACTTGTAAACTGAAACAGAGGTAG 59.576 42.308 5.76 0.00 35.18 3.18
214 223 6.099269 AGGACTTGTAAACTGAAACAGAGGTA 59.901 38.462 5.76 0.00 35.18 3.08
215 224 5.104485 AGGACTTGTAAACTGAAACAGAGGT 60.104 40.000 5.76 0.00 35.18 3.85
216 225 5.237344 CAGGACTTGTAAACTGAAACAGAGG 59.763 44.000 5.76 0.00 35.18 3.69
217 226 5.277538 GCAGGACTTGTAAACTGAAACAGAG 60.278 44.000 5.76 0.00 35.18 3.35
218 227 4.574828 GCAGGACTTGTAAACTGAAACAGA 59.425 41.667 5.76 0.00 35.18 3.41
219 228 4.552767 CGCAGGACTTGTAAACTGAAACAG 60.553 45.833 0.00 0.00 37.52 3.16
220 229 3.311322 CGCAGGACTTGTAAACTGAAACA 59.689 43.478 0.00 0.00 32.86 2.83
221 230 3.848554 GCGCAGGACTTGTAAACTGAAAC 60.849 47.826 0.30 0.00 32.86 2.78
222 231 2.289547 GCGCAGGACTTGTAAACTGAAA 59.710 45.455 0.30 0.00 32.86 2.69
223 232 1.871039 GCGCAGGACTTGTAAACTGAA 59.129 47.619 0.30 0.00 32.86 3.02
224 233 1.508632 GCGCAGGACTTGTAAACTGA 58.491 50.000 0.30 0.00 32.86 3.41
225 234 0.163788 CGCGCAGGACTTGTAAACTG 59.836 55.000 8.75 0.00 0.00 3.16
226 235 0.249741 ACGCGCAGGACTTGTAAACT 60.250 50.000 5.73 0.00 0.00 2.66
227 236 1.421382 TACGCGCAGGACTTGTAAAC 58.579 50.000 5.73 0.00 0.00 2.01
228 237 2.373540 ATACGCGCAGGACTTGTAAA 57.626 45.000 5.73 0.00 0.00 2.01
229 238 3.317149 AGATATACGCGCAGGACTTGTAA 59.683 43.478 5.73 0.00 0.00 2.41
230 239 2.882761 AGATATACGCGCAGGACTTGTA 59.117 45.455 5.73 0.00 0.00 2.41
231 240 1.681793 AGATATACGCGCAGGACTTGT 59.318 47.619 5.73 0.00 0.00 3.16
232 241 2.423926 AGATATACGCGCAGGACTTG 57.576 50.000 5.73 0.00 0.00 3.16
233 242 2.488545 CCTAGATATACGCGCAGGACTT 59.511 50.000 5.73 0.00 0.00 3.01
234 243 2.085320 CCTAGATATACGCGCAGGACT 58.915 52.381 5.73 3.27 0.00 3.85
235 244 1.811359 ACCTAGATATACGCGCAGGAC 59.189 52.381 5.73 0.00 0.00 3.85
236 245 2.195741 ACCTAGATATACGCGCAGGA 57.804 50.000 5.73 0.00 0.00 3.86
237 246 2.030185 ACAACCTAGATATACGCGCAGG 60.030 50.000 5.73 6.39 0.00 4.85
238 247 3.235195 GACAACCTAGATATACGCGCAG 58.765 50.000 5.73 2.42 0.00 5.18
239 248 2.619646 TGACAACCTAGATATACGCGCA 59.380 45.455 5.73 0.00 0.00 6.09
240 249 3.278367 TGACAACCTAGATATACGCGC 57.722 47.619 5.73 0.00 0.00 6.86
241 250 6.764877 AAATTGACAACCTAGATATACGCG 57.235 37.500 3.53 3.53 0.00 6.01
355 364 9.874205 CAATTTGACCAACCTAATACAAATCAT 57.126 29.630 0.00 0.00 37.10 2.45
356 365 9.083422 TCAATTTGACCAACCTAATACAAATCA 57.917 29.630 0.00 0.00 37.10 2.57
357 366 9.353999 GTCAATTTGACCAACCTAATACAAATC 57.646 33.333 17.07 0.00 41.37 2.17
358 367 8.026607 CGTCAATTTGACCAACCTAATACAAAT 58.973 33.333 20.87 0.00 44.20 2.32
359 368 7.228906 TCGTCAATTTGACCAACCTAATACAAA 59.771 33.333 20.87 0.00 44.20 2.83
360 369 6.711194 TCGTCAATTTGACCAACCTAATACAA 59.289 34.615 20.87 0.00 44.20 2.41
361 370 6.148150 GTCGTCAATTTGACCAACCTAATACA 59.852 38.462 20.87 0.00 44.20 2.29
362 371 6.540205 GTCGTCAATTTGACCAACCTAATAC 58.460 40.000 20.87 5.03 44.20 1.89
363 372 6.730960 GTCGTCAATTTGACCAACCTAATA 57.269 37.500 20.87 0.00 44.20 0.98
364 373 5.622770 GTCGTCAATTTGACCAACCTAAT 57.377 39.130 20.87 0.00 44.20 1.73
372 381 5.201262 ACCCCTAGGTCGTCAATTTGACC 62.201 52.174 20.87 10.15 46.45 4.02
373 382 2.027469 ACCCCTAGGTCGTCAATTTGAC 60.027 50.000 17.76 17.76 46.45 3.18
374 383 2.262637 ACCCCTAGGTCGTCAATTTGA 58.737 47.619 8.29 0.00 46.45 2.69
375 384 2.781681 ACCCCTAGGTCGTCAATTTG 57.218 50.000 8.29 0.00 46.45 2.32
376 385 2.167075 CGTACCCCTAGGTCGTCAATTT 59.833 50.000 8.29 0.00 46.45 1.82
377 386 1.753073 CGTACCCCTAGGTCGTCAATT 59.247 52.381 8.29 0.00 46.45 2.32
378 387 1.396653 CGTACCCCTAGGTCGTCAAT 58.603 55.000 8.29 0.00 46.45 2.57
379 388 1.315257 GCGTACCCCTAGGTCGTCAA 61.315 60.000 8.29 0.00 46.45 3.18
380 389 1.750399 GCGTACCCCTAGGTCGTCA 60.750 63.158 8.29 0.00 46.45 4.35
381 390 2.828128 CGCGTACCCCTAGGTCGTC 61.828 68.421 8.29 3.46 46.45 4.20
382 391 2.825836 CGCGTACCCCTAGGTCGT 60.826 66.667 8.29 6.00 46.45 4.34
383 392 4.261781 GCGCGTACCCCTAGGTCG 62.262 72.222 8.43 8.12 46.45 4.79
384 393 3.142838 TGCGCGTACCCCTAGGTC 61.143 66.667 8.43 0.00 46.45 3.85
386 395 4.564116 CGTGCGCGTACCCCTAGG 62.564 72.222 21.71 0.06 40.04 3.02
393 402 4.781959 TACAGGGCGTGCGCGTAC 62.782 66.667 22.18 17.94 43.06 3.67
394 403 3.570621 TTTACAGGGCGTGCGCGTA 62.571 57.895 22.18 0.00 43.06 4.42
395 404 4.973055 TTTACAGGGCGTGCGCGT 62.973 61.111 22.18 2.94 43.06 6.01
396 405 4.439472 GTTTACAGGGCGTGCGCG 62.439 66.667 16.86 16.86 43.06 6.86
397 406 3.047877 AGTTTACAGGGCGTGCGC 61.048 61.111 7.17 8.17 41.06 6.09
398 407 1.225376 TTCAGTTTACAGGGCGTGCG 61.225 55.000 7.17 0.00 0.00 5.34
399 408 0.948678 TTTCAGTTTACAGGGCGTGC 59.051 50.000 7.17 0.00 0.00 5.34
400 409 2.480419 CTCTTTCAGTTTACAGGGCGTG 59.520 50.000 5.50 5.50 0.00 5.34
401 410 2.367567 TCTCTTTCAGTTTACAGGGCGT 59.632 45.455 0.00 0.00 0.00 5.68
402 411 2.996621 CTCTCTTTCAGTTTACAGGGCG 59.003 50.000 0.00 0.00 0.00 6.13
403 412 3.244596 ACCTCTCTTTCAGTTTACAGGGC 60.245 47.826 0.00 0.00 0.00 5.19
404 413 4.625607 ACCTCTCTTTCAGTTTACAGGG 57.374 45.455 0.00 0.00 0.00 4.45
405 414 6.347859 ACTACCTCTCTTTCAGTTTACAGG 57.652 41.667 0.00 0.00 0.00 4.00
406 415 8.113173 AGTACTACCTCTCTTTCAGTTTACAG 57.887 38.462 0.00 0.00 0.00 2.74
407 416 9.228949 CTAGTACTACCTCTCTTTCAGTTTACA 57.771 37.037 0.00 0.00 0.00 2.41
408 417 9.230122 ACTAGTACTACCTCTCTTTCAGTTTAC 57.770 37.037 0.00 0.00 0.00 2.01
410 419 9.804977 TTACTAGTACTACCTCTCTTTCAGTTT 57.195 33.333 0.91 0.00 0.00 2.66
411 420 9.978336 ATTACTAGTACTACCTCTCTTTCAGTT 57.022 33.333 0.91 0.00 0.00 3.16
418 427 9.341078 GCAACTTATTACTAGTACTACCTCTCT 57.659 37.037 0.91 0.00 0.00 3.10
419 428 8.567104 GGCAACTTATTACTAGTACTACCTCTC 58.433 40.741 0.91 0.00 0.00 3.20
420 429 8.462589 GGCAACTTATTACTAGTACTACCTCT 57.537 38.462 0.91 0.00 0.00 3.69
461 470 4.759693 ACAATCCTCACGTCAAGCAATAAA 59.240 37.500 0.00 0.00 0.00 1.40
462 471 4.323417 ACAATCCTCACGTCAAGCAATAA 58.677 39.130 0.00 0.00 0.00 1.40
471 480 2.096218 GTCAAGCAACAATCCTCACGTC 60.096 50.000 0.00 0.00 0.00 4.34
539 1720 3.256383 CAGCCACCATCAATTCACTTTCA 59.744 43.478 0.00 0.00 0.00 2.69
540 1721 3.507233 TCAGCCACCATCAATTCACTTTC 59.493 43.478 0.00 0.00 0.00 2.62
541 1722 3.256631 GTCAGCCACCATCAATTCACTTT 59.743 43.478 0.00 0.00 0.00 2.66
542 1723 2.821969 GTCAGCCACCATCAATTCACTT 59.178 45.455 0.00 0.00 0.00 3.16
543 1724 2.440409 GTCAGCCACCATCAATTCACT 58.560 47.619 0.00 0.00 0.00 3.41
544 1725 1.474077 GGTCAGCCACCATCAATTCAC 59.526 52.381 0.00 0.00 45.98 3.18
580 1761 3.196685 CGAAAGAGAGATTCCACCTTCCT 59.803 47.826 0.00 0.00 0.00 3.36
623 1804 6.363167 TTGTACCGATAGAAAAGGAAGGAA 57.637 37.500 0.00 0.00 39.76 3.36
624 1805 6.555463 ATTGTACCGATAGAAAAGGAAGGA 57.445 37.500 0.00 0.00 39.76 3.36
625 1806 8.774586 CATTATTGTACCGATAGAAAAGGAAGG 58.225 37.037 0.00 0.00 39.76 3.46
626 1807 9.542462 TCATTATTGTACCGATAGAAAAGGAAG 57.458 33.333 0.00 0.00 39.76 3.46
644 1825 0.667993 ACGGGCGGCATTCATTATTG 59.332 50.000 12.47 0.00 0.00 1.90
649 1830 2.045438 TTCACGGGCGGCATTCAT 60.045 55.556 12.47 0.00 0.00 2.57
650 1831 3.053291 GTTCACGGGCGGCATTCA 61.053 61.111 12.47 0.00 0.00 2.57
651 1832 3.810896 GGTTCACGGGCGGCATTC 61.811 66.667 12.47 0.00 0.00 2.67
699 1884 6.561614 CAAACCTAAGAGCTGACGTAAGATA 58.438 40.000 3.33 0.00 43.62 1.98
740 1930 5.208121 AGAATGAACAACAGGGAGGAAAAA 58.792 37.500 0.00 0.00 0.00 1.94
764 1954 0.739462 TAACCAATGAGCTCGCCACG 60.739 55.000 9.64 0.00 0.00 4.94
769 1959 1.766143 GCGGCTAACCAATGAGCTCG 61.766 60.000 9.64 0.00 38.79 5.03
772 1962 1.748879 TGGCGGCTAACCAATGAGC 60.749 57.895 11.43 0.00 38.00 4.26
773 1963 1.376609 GGTGGCGGCTAACCAATGAG 61.377 60.000 11.43 0.00 39.39 2.90
774 1964 1.377987 GGTGGCGGCTAACCAATGA 60.378 57.895 11.43 0.00 39.39 2.57
775 1965 2.760159 CGGTGGCGGCTAACCAATG 61.760 63.158 17.13 0.00 39.39 2.82
776 1966 2.437716 CGGTGGCGGCTAACCAAT 60.438 61.111 17.13 0.00 39.39 3.16
778 1968 4.077184 CTCGGTGGCGGCTAACCA 62.077 66.667 17.13 5.23 36.14 3.67
779 1969 4.832608 CCTCGGTGGCGGCTAACC 62.833 72.222 11.43 9.66 0.00 2.85
800 1990 1.375326 GACCCAGGGTTGACCACTC 59.625 63.158 14.23 0.00 43.89 3.51
857 2057 3.493440 CCGCTTACGTTTCCGCCC 61.493 66.667 0.00 0.00 37.70 6.13
858 2058 4.156622 GCCGCTTACGTTTCCGCC 62.157 66.667 0.00 0.00 37.70 6.13
859 2059 4.156622 GGCCGCTTACGTTTCCGC 62.157 66.667 0.00 0.00 37.70 5.54
860 2060 2.736682 CTGGCCGCTTACGTTTCCG 61.737 63.158 0.00 0.00 37.70 4.30
952 2153 0.608640 GAGGAGGAAACGGAAGAGCA 59.391 55.000 0.00 0.00 0.00 4.26
955 2156 1.183030 TGCGAGGAGGAAACGGAAGA 61.183 55.000 0.00 0.00 0.00 2.87
966 2167 1.805869 GATGGATGGATTGCGAGGAG 58.194 55.000 0.00 0.00 0.00 3.69
1008 2222 2.657372 GACGTACTTGAAGTGCTTCTCG 59.343 50.000 8.33 5.86 40.14 4.04
1073 2287 0.681564 GAAGCAGAGACTCGGAGGGA 60.682 60.000 10.23 0.00 0.00 4.20
1074 2288 1.671901 GGAAGCAGAGACTCGGAGGG 61.672 65.000 10.23 0.00 0.00 4.30
1075 2289 0.682855 AGGAAGCAGAGACTCGGAGG 60.683 60.000 10.23 0.00 0.00 4.30
1076 2290 0.455410 CAGGAAGCAGAGACTCGGAG 59.545 60.000 6.80 2.83 0.00 4.63
1077 2291 0.251386 ACAGGAAGCAGAGACTCGGA 60.251 55.000 6.80 0.00 0.00 4.55
1078 2292 0.172352 GACAGGAAGCAGAGACTCGG 59.828 60.000 0.00 0.00 0.00 4.63
1098 2312 1.614996 AAACATGCATTCCACCGACA 58.385 45.000 0.00 0.00 0.00 4.35
1099 2313 2.327568 CAAAACATGCATTCCACCGAC 58.672 47.619 0.00 0.00 0.00 4.79
1100 2314 1.271934 CCAAAACATGCATTCCACCGA 59.728 47.619 0.00 0.00 0.00 4.69
1101 2315 1.000731 ACCAAAACATGCATTCCACCG 59.999 47.619 0.00 0.00 0.00 4.94
1102 2316 2.807392 CAACCAAAACATGCATTCCACC 59.193 45.455 0.00 0.00 0.00 4.61
1225 2445 0.179062 AGGTAGAGCGACGTACGGAT 60.179 55.000 21.06 0.20 42.83 4.18
1294 2529 5.220758 CCGTTGGGTTCCAAAAAGAAATTTG 60.221 40.000 0.00 0.00 45.73 2.32
1298 2533 3.528597 CCGTTGGGTTCCAAAAAGAAA 57.471 42.857 0.45 0.00 45.73 2.52
1311 2546 2.561037 GCCCTTGTTGACCGTTGGG 61.561 63.158 0.00 0.00 37.76 4.12
1312 2547 1.528309 AGCCCTTGTTGACCGTTGG 60.528 57.895 0.00 0.00 0.00 3.77
1324 2566 1.069049 GCAACAACAACATCAGCCCTT 59.931 47.619 0.00 0.00 0.00 3.95
1325 2567 0.675633 GCAACAACAACATCAGCCCT 59.324 50.000 0.00 0.00 0.00 5.19
1326 2568 0.675633 AGCAACAACAACATCAGCCC 59.324 50.000 0.00 0.00 0.00 5.19
1327 2569 2.514205 AAGCAACAACAACATCAGCC 57.486 45.000 0.00 0.00 0.00 4.85
1328 2570 3.000523 CACAAAGCAACAACAACATCAGC 59.999 43.478 0.00 0.00 0.00 4.26
1736 2983 3.050619 ACGTTTAGAGTTGAGCGACAAG 58.949 45.455 0.00 0.00 39.30 3.16
1737 2984 2.792674 CACGTTTAGAGTTGAGCGACAA 59.207 45.455 0.00 0.00 36.02 3.18
1738 2985 2.223641 ACACGTTTAGAGTTGAGCGACA 60.224 45.455 0.00 0.00 0.00 4.35
1756 3003 0.531974 TGCACGGAAGGAAGACACAC 60.532 55.000 0.00 0.00 0.00 3.82
1757 3004 0.179234 TTGCACGGAAGGAAGACACA 59.821 50.000 0.00 0.00 0.00 3.72
1892 3139 3.679389 AGAATGAGTAACCAAGCCACTG 58.321 45.455 0.00 0.00 0.00 3.66
1958 3206 7.355332 TGTTAAAGTAACATAAACTCTCCGC 57.645 36.000 0.00 0.00 43.23 5.54
1986 3316 1.067283 ACTCGAGACATGCTGTTCTGG 60.067 52.381 21.68 0.00 0.00 3.86
2018 3348 4.662468 TTCTGCCTAAGCTGTCAGATAG 57.338 45.455 3.32 5.19 40.80 2.08
2047 3402 7.543868 CAGAAATCTTACAGAGAACACACTAGG 59.456 40.741 0.00 0.00 38.06 3.02
2071 3426 1.575576 GCAGGCAGACACTTGCTCAG 61.576 60.000 0.00 0.00 43.57 3.35
2086 3449 0.752009 ATCAGCTCAATGCCTGCAGG 60.752 55.000 29.34 29.34 44.23 4.85
2114 3477 4.038271 AGATCAGCCTTGACAATTTCCA 57.962 40.909 0.00 0.00 35.83 3.53
2162 3525 2.846206 TCATAGGTGAAGGTTGCTCCAT 59.154 45.455 1.79 0.00 39.02 3.41
2280 5303 7.012989 ACTCGGCAAAAGTAAGATTAACAAGTT 59.987 33.333 0.00 0.00 0.00 2.66
2281 5304 6.485648 ACTCGGCAAAAGTAAGATTAACAAGT 59.514 34.615 0.00 0.00 0.00 3.16
2322 5345 9.655769 CACAGATACAATAAGTGCACATATTTC 57.344 33.333 21.42 16.97 0.00 2.17
2336 5359 6.092670 GCAAGCAGAGAAACACAGATACAATA 59.907 38.462 0.00 0.00 0.00 1.90
2348 5371 1.803555 GGTCTGAGCAAGCAGAGAAAC 59.196 52.381 1.28 0.00 44.92 2.78
2725 5762 2.651361 CCGGCAGTGAAGAGACGT 59.349 61.111 0.00 0.00 0.00 4.34
3162 6299 1.602668 GCAAGGACAAGATGCGCAAAA 60.603 47.619 17.11 0.00 0.00 2.44
3167 6304 2.787249 CGGCAAGGACAAGATGCG 59.213 61.111 0.00 0.00 40.94 4.73
3205 6342 7.340743 TCTGGGTGAAAACACAAGATAAAAGAA 59.659 33.333 0.00 0.00 0.00 2.52
3233 6370 3.218398 GCTTGTTTCGAAGAATGTGTCG 58.782 45.455 0.00 0.00 45.90 4.35
3257 6394 1.270785 CCGATGGCATATACACCAGCA 60.271 52.381 0.00 0.00 42.54 4.41
3302 6439 2.396955 CCTCGGCTCGTCGTACAGT 61.397 63.158 0.00 0.00 0.00 3.55
3418 6555 9.658799 TTTCATTGGAAAACAAACAGTTGAATA 57.341 25.926 0.00 0.00 43.46 1.75
3439 6576 7.776500 TGACAGATCATGTATGTGGAATTTCAT 59.224 33.333 0.00 0.00 44.17 2.57
3454 6591 4.861389 GTCAAGCTTCTGACAGATCATG 57.139 45.455 12.68 5.24 44.32 3.07
3462 6599 5.869753 ATTGTACATGTCAAGCTTCTGAC 57.130 39.130 10.99 10.99 45.01 3.51
3463 6600 5.764686 ACAATTGTACATGTCAAGCTTCTGA 59.235 36.000 9.97 0.00 0.00 3.27
3466 6603 7.698836 AAAACAATTGTACATGTCAAGCTTC 57.301 32.000 12.39 0.00 0.00 3.86
3536 6673 1.308069 GGTAGTCGTACTCCGCCACA 61.308 60.000 0.00 0.00 36.19 4.17
3572 6709 3.164011 GCGACGTCGAACGACCTG 61.164 66.667 39.74 9.55 46.05 4.00
3845 6982 3.059461 ACACAAAATTTACACGCGTCGAT 60.059 39.130 9.86 0.00 0.00 3.59
3893 7033 0.611714 TTTGGAACGGAGGGAGTAGC 59.388 55.000 0.00 0.00 0.00 3.58
3894 7034 3.629142 AATTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
3895 7035 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
3896 7036 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
3897 7037 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
3898 7038 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
3899 7039 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3900 7040 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3901 7041 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
3902 7042 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
3903 7043 2.331194 ACGACGAGTAATTTGGAACGG 58.669 47.619 0.00 0.00 0.00 4.44
3904 7044 4.161333 ACTACGACGAGTAATTTGGAACG 58.839 43.478 0.00 0.00 34.45 3.95
3905 7045 5.061435 GGAACTACGACGAGTAATTTGGAAC 59.939 44.000 0.00 0.00 34.45 3.62
3906 7046 5.047802 AGGAACTACGACGAGTAATTTGGAA 60.048 40.000 0.00 0.00 36.02 3.53
3907 7047 4.460382 AGGAACTACGACGAGTAATTTGGA 59.540 41.667 0.00 0.00 36.02 3.53
3908 7048 4.741342 AGGAACTACGACGAGTAATTTGG 58.259 43.478 0.00 0.00 36.02 3.28
3909 7049 5.454877 GCTAGGAACTACGACGAGTAATTTG 59.545 44.000 0.00 0.00 41.75 2.32
3910 7050 5.356470 AGCTAGGAACTACGACGAGTAATTT 59.644 40.000 0.00 0.00 41.75 1.82
3911 7051 4.880696 AGCTAGGAACTACGACGAGTAATT 59.119 41.667 0.00 0.00 41.75 1.40
3912 7052 4.450053 AGCTAGGAACTACGACGAGTAAT 58.550 43.478 0.00 0.00 41.75 1.89
3913 7053 3.866651 AGCTAGGAACTACGACGAGTAA 58.133 45.455 0.00 0.00 41.75 2.24
3914 7054 3.118992 TGAGCTAGGAACTACGACGAGTA 60.119 47.826 0.00 0.00 41.75 2.59
3915 7055 2.278854 GAGCTAGGAACTACGACGAGT 58.721 52.381 0.00 0.00 41.75 4.18
3916 7056 2.277969 TGAGCTAGGAACTACGACGAG 58.722 52.381 0.00 0.00 41.75 4.18
3917 7057 2.093816 TCTGAGCTAGGAACTACGACGA 60.094 50.000 0.00 0.00 41.75 4.20
3918 7058 2.277969 TCTGAGCTAGGAACTACGACG 58.722 52.381 0.00 0.00 41.75 5.12
3919 7059 3.690628 ACTTCTGAGCTAGGAACTACGAC 59.309 47.826 0.00 0.00 41.75 4.34
3920 7060 3.690139 CACTTCTGAGCTAGGAACTACGA 59.310 47.826 0.00 0.00 41.75 3.43
3921 7061 3.440872 ACACTTCTGAGCTAGGAACTACG 59.559 47.826 0.00 0.00 41.75 3.51
3922 7062 4.459685 TCACACTTCTGAGCTAGGAACTAC 59.540 45.833 0.00 0.00 41.75 2.73
4009 7149 6.769512 AGAACCAGAGATGCTACTAAACAAA 58.230 36.000 0.00 0.00 0.00 2.83
4010 7150 6.360370 AGAACCAGAGATGCTACTAAACAA 57.640 37.500 0.00 0.00 0.00 2.83
4011 7151 6.436218 TGTAGAACCAGAGATGCTACTAAACA 59.564 38.462 0.00 0.00 34.16 2.83
4012 7152 6.864342 TGTAGAACCAGAGATGCTACTAAAC 58.136 40.000 0.00 0.00 34.16 2.01
4087 7691 5.659440 TTTGGCATGAAATTCTTAGTCCC 57.341 39.130 0.00 0.00 0.00 4.46
4134 7739 1.005215 AGGGCAAGACCTCATTTGGAG 59.995 52.381 0.00 0.00 43.65 3.86
4188 7793 7.417612 CCTACAGATGGTGGAATTAATTTTCG 58.582 38.462 1.43 0.00 0.00 3.46
4201 7806 0.537188 AGTTCGGCCTACAGATGGTG 59.463 55.000 0.00 0.00 0.00 4.17
4207 7812 3.309954 GCTTGATAAAGTTCGGCCTACAG 59.690 47.826 0.00 0.00 0.00 2.74
4208 7813 3.267483 GCTTGATAAAGTTCGGCCTACA 58.733 45.455 0.00 0.00 0.00 2.74
4215 7836 6.241207 TCCTTTTCTGCTTGATAAAGTTCG 57.759 37.500 0.00 0.00 0.00 3.95
4237 7858 0.538287 AACTTGTCCAGGCCTTGCTC 60.538 55.000 0.00 0.00 0.00 4.26
4274 7895 0.882042 CGTTGTGCAAGCCTCAGAGT 60.882 55.000 0.00 0.00 0.00 3.24
4362 7983 5.243730 TGGCTGCCTAATTAAGCATTTATCC 59.756 40.000 21.03 6.79 38.56 2.59
4364 7985 6.071165 GGATGGCTGCCTAATTAAGCATTTAT 60.071 38.462 21.03 4.48 38.56 1.40
4381 8002 5.421693 AGTGCTTATCTCTATAGGATGGCTG 59.578 44.000 18.98 9.07 0.00 4.85
4463 8086 2.558359 GCACTTTCAGGCCTTGTACAAT 59.442 45.455 9.13 0.00 0.00 2.71
4496 8120 4.750098 GGAAGAAGACACGAATGAGTTTCA 59.250 41.667 0.00 0.00 33.66 2.69
4497 8121 4.991687 AGGAAGAAGACACGAATGAGTTTC 59.008 41.667 0.00 0.00 0.00 2.78
4498 8122 4.962155 AGGAAGAAGACACGAATGAGTTT 58.038 39.130 0.00 0.00 0.00 2.66
4501 8125 4.390297 GGAAAGGAAGAAGACACGAATGAG 59.610 45.833 0.00 0.00 0.00 2.90
4502 8126 4.202315 TGGAAAGGAAGAAGACACGAATGA 60.202 41.667 0.00 0.00 0.00 2.57
4503 8127 4.065088 TGGAAAGGAAGAAGACACGAATG 58.935 43.478 0.00 0.00 0.00 2.67
4504 8128 4.351874 TGGAAAGGAAGAAGACACGAAT 57.648 40.909 0.00 0.00 0.00 3.34
4526 8155 0.962356 CAGATTCCCCGCAACAAGCT 60.962 55.000 0.00 0.00 42.61 3.74
4547 8176 0.400213 TGATTCCCCGCAACAAGAGT 59.600 50.000 0.00 0.00 0.00 3.24
4569 8198 7.142680 CAGTTTTTATACAGGCCGAAAAAGAA 58.857 34.615 12.47 0.00 32.90 2.52
4570 8199 6.674066 CAGTTTTTATACAGGCCGAAAAAGA 58.326 36.000 12.47 0.00 32.90 2.52
4571 8200 5.344933 GCAGTTTTTATACAGGCCGAAAAAG 59.655 40.000 12.47 6.54 32.90 2.27
4611 8241 5.163131 GGGGTAGCATTAGGAATTAAGACCA 60.163 44.000 0.00 0.00 0.00 4.02
4633 8263 6.425114 CAGTAACAATAGCAATAGCAGTAGGG 59.575 42.308 0.00 0.00 45.49 3.53
4698 8328 0.739112 CACCGAGCTTCCTTCTCTGC 60.739 60.000 0.00 0.00 0.00 4.26
4725 8355 4.758165 TCTTCTTGTTGTTAAATCCCGGTC 59.242 41.667 0.00 0.00 0.00 4.79
4740 8370 9.355215 CGTGTACTATGATTACTTTCTTCTTGT 57.645 33.333 0.00 0.00 0.00 3.16
4741 8371 9.569167 TCGTGTACTATGATTACTTTCTTCTTG 57.431 33.333 0.00 0.00 0.00 3.02
4752 8382 6.505044 AGTGTGTGTCGTGTACTATGATTA 57.495 37.500 0.00 0.00 0.00 1.75
4767 8397 3.568430 TCTCATTCGTCAGTAGTGTGTGT 59.432 43.478 0.00 0.00 0.00 3.72
4776 8406 4.437239 GGACATCAATCTCATTCGTCAGT 58.563 43.478 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.