Multiple sequence alignment - TraesCS7B01G174900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G174900 chr7B 100.000 3273 0 0 1 3273 246001079 246004351 0.000000e+00 6045.0
1 TraesCS7B01G174900 chr7B 97.101 69 2 0 2630 2698 139050892 139050960 2.060000e-22 117.0
2 TraesCS7B01G174900 chr7B 87.838 74 6 3 1811 1883 424155066 424154995 2.090000e-12 84.2
3 TraesCS7B01G174900 chr7B 92.727 55 1 1 2509 2560 251035662 251035716 3.500000e-10 76.8
4 TraesCS7B01G174900 chr7A 92.316 976 34 15 747 1707 290915713 290916662 0.000000e+00 1349.0
5 TraesCS7B01G174900 chr7A 88.717 647 40 11 1879 2513 290917153 290917778 0.000000e+00 760.0
6 TraesCS7B01G174900 chr7A 80.866 439 33 15 2853 3273 290917867 290918272 6.870000e-77 298.0
7 TraesCS7B01G174900 chr7A 97.674 86 2 0 2696 2781 369968719 369968804 7.320000e-32 148.0
8 TraesCS7B01G174900 chr7A 97.101 69 2 0 2630 2698 643187035 643186967 2.060000e-22 117.0
9 TraesCS7B01G174900 chr7A 91.139 79 5 1 1719 1795 290917052 290917130 4.470000e-19 106.0
10 TraesCS7B01G174900 chr7A 97.778 45 1 0 2779 2823 717441236 717441192 9.740000e-11 78.7
11 TraesCS7B01G174900 chr7A 89.831 59 6 0 1713 1771 290916930 290916988 3.500000e-10 76.8
12 TraesCS7B01G174900 chr7A 94.286 35 2 0 1849 1883 81912875 81912909 2.000000e-03 54.7
13 TraesCS7B01G174900 chr7D 93.764 914 24 7 787 1668 265695875 265696787 0.000000e+00 1341.0
14 TraesCS7B01G174900 chr7D 96.292 809 19 6 1733 2532 265697783 265698589 0.000000e+00 1317.0
15 TraesCS7B01G174900 chr7D 97.333 300 4 2 2978 3273 265698860 265699159 1.050000e-139 507.0
16 TraesCS7B01G174900 chr7D 92.814 334 22 2 243 574 265695338 265695671 1.770000e-132 483.0
17 TraesCS7B01G174900 chr7D 90.303 165 16 0 77 241 614668975 614669139 1.980000e-52 217.0
18 TraesCS7B01G174900 chr7D 97.561 82 2 0 1 82 265695256 265695337 1.220000e-29 141.0
19 TraesCS7B01G174900 chr7D 87.500 120 12 2 2671 2787 33051255 33051136 5.700000e-28 135.0
20 TraesCS7B01G174900 chr7D 97.101 69 2 0 2630 2698 265698588 265698656 2.060000e-22 117.0
21 TraesCS7B01G174900 chr7D 91.379 58 2 1 2512 2566 534570746 534570689 3.500000e-10 76.8
22 TraesCS7B01G174900 chr7D 92.308 39 3 0 2502 2540 101559129 101559167 4.560000e-04 56.5
23 TraesCS7B01G174900 chr1B 93.210 162 11 0 80 241 32457996 32458157 4.220000e-59 239.0
24 TraesCS7B01G174900 chr1B 91.875 160 13 0 80 239 546968649 546968490 1.180000e-54 224.0
25 TraesCS7B01G174900 chr1B 90.741 162 15 0 80 241 546704467 546704306 1.980000e-52 217.0
26 TraesCS7B01G174900 chr1B 93.333 45 2 1 1812 1855 662552779 662552735 7.580000e-07 65.8
27 TraesCS7B01G174900 chrUn 92.547 161 11 1 81 241 100779963 100780122 2.540000e-56 230.0
28 TraesCS7B01G174900 chrUn 97.222 36 1 0 2505 2540 87983105 87983140 9.810000e-06 62.1
29 TraesCS7B01G174900 chrUn 100.000 28 0 0 1857 1884 109027337 109027364 6.000000e-03 52.8
30 TraesCS7B01G174900 chr4B 91.925 161 13 0 81 241 483266540 483266380 3.290000e-55 226.0
31 TraesCS7B01G174900 chr4B 97.101 69 2 0 2630 2698 469014392 469014460 2.060000e-22 117.0
32 TraesCS7B01G174900 chr4B 86.486 74 5 5 2547 2619 94812154 94812223 3.500000e-10 76.8
33 TraesCS7B01G174900 chr4B 97.561 41 0 1 2547 2587 665049731 665049692 5.860000e-08 69.4
34 TraesCS7B01G174900 chr4B 97.561 41 0 1 2547 2587 665102787 665102748 5.860000e-08 69.4
35 TraesCS7B01G174900 chr4B 100.000 30 0 0 2511 2540 489376089 489376118 4.560000e-04 56.5
36 TraesCS7B01G174900 chr5B 91.304 161 14 0 81 241 539322883 539322723 1.530000e-53 220.0
37 TraesCS7B01G174900 chr5B 90.909 44 2 2 2509 2550 480641439 480641482 1.270000e-04 58.4
38 TraesCS7B01G174900 chr5B 94.286 35 2 0 1849 1883 259544202 259544236 2.000000e-03 54.7
39 TraesCS7B01G174900 chr3D 90.741 162 15 0 80 241 90685558 90685719 1.980000e-52 217.0
40 TraesCS7B01G174900 chr3D 90.303 165 16 0 77 241 238999410 238999574 1.980000e-52 217.0
41 TraesCS7B01G174900 chr3D 94.505 91 4 1 2691 2781 224304756 224304667 4.400000e-29 139.0
42 TraesCS7B01G174900 chr3D 100.000 32 0 0 2509 2540 182423656 182423625 3.530000e-05 60.2
43 TraesCS7B01G174900 chr3D 91.111 45 1 2 2510 2551 554066217 554066173 1.270000e-04 58.4
44 TraesCS7B01G174900 chr3D 84.127 63 5 5 1825 1885 562522875 562522934 4.560000e-04 56.5
45 TraesCS7B01G174900 chr3D 88.889 45 3 1 1809 1851 565821374 565821330 2.000000e-03 54.7
46 TraesCS7B01G174900 chr3D 100.000 28 0 0 1857 1884 278514970 278514943 6.000000e-03 52.8
47 TraesCS7B01G174900 chr3D 100.000 28 0 0 1855 1882 576384043 576384016 6.000000e-03 52.8
48 TraesCS7B01G174900 chr5A 94.681 94 5 0 2688 2781 654622380 654622287 2.630000e-31 147.0
49 TraesCS7B01G174900 chr6D 93.750 96 6 0 2688 2783 437774041 437774136 9.470000e-31 145.0
50 TraesCS7B01G174900 chr6D 92.079 101 5 3 2696 2796 385917026 385916929 4.400000e-29 139.0
51 TraesCS7B01G174900 chr6D 89.623 106 10 1 2680 2785 14202699 14202803 2.050000e-27 134.0
52 TraesCS7B01G174900 chr6D 97.101 69 2 0 2630 2698 409753277 409753345 2.060000e-22 117.0
53 TraesCS7B01G174900 chr6D 85.897 78 5 2 2779 2850 453586456 453586533 9.740000e-11 78.7
54 TraesCS7B01G174900 chr6D 84.722 72 6 1 2779 2850 107695661 107695595 2.110000e-07 67.6
55 TraesCS7B01G174900 chr6D 93.182 44 3 0 1809 1852 469794046 469794089 7.580000e-07 65.8
56 TraesCS7B01G174900 chr6D 94.444 36 2 0 2505 2540 468308042 468308077 4.560000e-04 56.5
57 TraesCS7B01G174900 chr6D 100.000 29 0 0 2512 2540 115962135 115962107 2.000000e-03 54.7
58 TraesCS7B01G174900 chr6D 96.875 32 1 0 2509 2540 294399972 294400003 2.000000e-03 54.7
59 TraesCS7B01G174900 chr6D 100.000 29 0 0 2512 2540 360590747 360590775 2.000000e-03 54.7
60 TraesCS7B01G174900 chr6D 100.000 28 0 0 2505 2532 72351058 72351031 6.000000e-03 52.8
61 TraesCS7B01G174900 chr6D 100.000 28 0 0 2512 2539 204060252 204060279 6.000000e-03 52.8
62 TraesCS7B01G174900 chr6D 100.000 28 0 0 2512 2539 204186011 204186038 6.000000e-03 52.8
63 TraesCS7B01G174900 chr6D 100.000 28 0 0 2512 2539 212121615 212121588 6.000000e-03 52.8
64 TraesCS7B01G174900 chr6D 100.000 28 0 0 2512 2539 365730100 365730073 6.000000e-03 52.8
65 TraesCS7B01G174900 chr2B 91.089 101 9 0 2684 2784 744873078 744873178 1.580000e-28 137.0
66 TraesCS7B01G174900 chr2B 83.908 87 12 2 2547 2632 29895301 29895216 7.530000e-12 82.4
67 TraesCS7B01G174900 chr2B 88.235 51 4 2 2490 2540 518050043 518050091 3.530000e-05 60.2
68 TraesCS7B01G174900 chr2B 94.595 37 1 1 1857 1893 746033067 746033032 4.560000e-04 56.5
69 TraesCS7B01G174900 chr3B 88.496 113 9 4 2695 2807 15111110 15111002 2.050000e-27 134.0
70 TraesCS7B01G174900 chr3B 100.000 29 0 0 1857 1885 310849011 310848983 2.000000e-03 54.7
71 TraesCS7B01G174900 chr6B 97.101 69 2 0 2630 2698 175326002 175326070 2.060000e-22 117.0
72 TraesCS7B01G174900 chr6B 89.333 75 6 2 2544 2616 474269468 474269394 3.480000e-15 93.5
73 TraesCS7B01G174900 chr6B 89.796 49 2 2 2505 2550 417491665 417491713 3.530000e-05 60.2
74 TraesCS7B01G174900 chr6B 89.362 47 4 1 1810 1855 514678472 514678518 1.270000e-04 58.4
75 TraesCS7B01G174900 chr5D 97.101 69 2 0 2630 2698 561659721 561659653 2.060000e-22 117.0
76 TraesCS7B01G174900 chr5D 97.778 45 1 0 2779 2823 210216983 210216939 9.740000e-11 78.7
77 TraesCS7B01G174900 chr5D 80.220 91 15 3 2575 2663 111788699 111788610 7.580000e-07 65.8
78 TraesCS7B01G174900 chr5D 97.059 34 1 0 2501 2534 508629207 508629174 1.270000e-04 58.4
79 TraesCS7B01G174900 chr5D 100.000 29 0 0 1859 1887 330236709 330236737 2.000000e-03 54.7
80 TraesCS7B01G174900 chr3A 97.101 69 2 0 2630 2698 662422364 662422432 2.060000e-22 117.0
81 TraesCS7B01G174900 chr3A 92.157 51 1 1 2511 2558 585929088 585929038 5.860000e-08 69.4
82 TraesCS7B01G174900 chr2A 89.362 94 9 1 2605 2698 747680978 747681070 2.060000e-22 117.0
83 TraesCS7B01G174900 chr2A 91.111 45 3 1 1812 1855 680521961 680522005 3.530000e-05 60.2
84 TraesCS7B01G174900 chr1A 89.412 85 8 1 2547 2631 30319480 30319397 4.470000e-19 106.0
85 TraesCS7B01G174900 chr1A 100.000 30 0 0 1822 1851 8320155 8320126 4.560000e-04 56.5
86 TraesCS7B01G174900 chr1A 100.000 28 0 0 1860 1887 109518527 109518554 6.000000e-03 52.8
87 TraesCS7B01G174900 chr1D 97.778 45 1 0 2779 2823 120787901 120787857 9.740000e-11 78.7
88 TraesCS7B01G174900 chr1D 97.778 45 1 0 2779 2823 384950605 384950561 9.740000e-11 78.7
89 TraesCS7B01G174900 chr1D 94.000 50 3 0 2774 2823 8796517 8796468 3.500000e-10 76.8
90 TraesCS7B01G174900 chr1D 86.207 58 6 2 1828 1884 235570598 235570542 9.810000e-06 62.1
91 TraesCS7B01G174900 chr1D 94.872 39 2 0 1814 1852 348064348 348064386 9.810000e-06 62.1
92 TraesCS7B01G174900 chr1D 100.000 32 0 0 2509 2540 32123627 32123658 3.530000e-05 60.2
93 TraesCS7B01G174900 chr1D 100.000 30 0 0 2512 2541 330817890 330817861 4.560000e-04 56.5
94 TraesCS7B01G174900 chr4D 92.727 55 1 1 2509 2560 73772218 73772272 3.500000e-10 76.8
95 TraesCS7B01G174900 chr4D 90.196 51 2 3 2493 2540 492804242 492804292 2.730000e-06 63.9
96 TraesCS7B01G174900 chr4D 100.000 30 0 0 2511 2540 9296447 9296476 4.560000e-04 56.5
97 TraesCS7B01G174900 chr4D 100.000 30 0 0 2511 2540 397390685 397390714 4.560000e-04 56.5
98 TraesCS7B01G174900 chr4D 100.000 29 0 0 2512 2540 10986243 10986215 2.000000e-03 54.7
99 TraesCS7B01G174900 chr2D 92.593 54 3 1 2779 2832 72819994 72819942 3.500000e-10 76.8
100 TraesCS7B01G174900 chr2D 97.561 41 1 0 2547 2587 175594449 175594489 1.630000e-08 71.3
101 TraesCS7B01G174900 chr2D 89.362 47 3 1 2512 2558 192752371 192752415 1.270000e-04 58.4
102 TraesCS7B01G174900 chr6A 91.071 56 2 1 2508 2560 311860845 311860900 4.530000e-09 73.1
103 TraesCS7B01G174900 chr6A 97.222 36 1 0 2505 2540 239115994 239115959 9.810000e-06 62.1
104 TraesCS7B01G174900 chr6A 94.444 36 2 0 2505 2540 134548540 134548575 4.560000e-04 56.5
105 TraesCS7B01G174900 chr6A 100.000 28 0 0 1857 1884 572128713 572128686 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G174900 chr7B 246001079 246004351 3272 False 6045.00 6045 100.000000 1 3273 1 chr7B.!!$F2 3272
1 TraesCS7B01G174900 chr7A 290915713 290918272 2559 False 517.96 1349 88.573800 747 3273 5 chr7A.!!$F3 2526
2 TraesCS7B01G174900 chr7D 265695256 265699159 3903 False 651.00 1341 95.810833 1 3273 6 chr7D.!!$F3 3272

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 282 0.030235 GGTGGGTTTTGAACGAGTGC 59.970 55.0 0.0 0.0 0.0 4.4 F
356 358 0.540923 GCTCTCTCCTGTGCCAATCT 59.459 55.0 0.0 0.0 0.0 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1294 1384 1.106285 AATGCCTGAAATTCCGGAGC 58.894 50.0 3.34 3.02 0.00 4.70 R
2309 3674 0.039256 GAACATGGAAGCGCTTGCAA 60.039 50.0 41.25 27.08 43.87 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.172180 AATGAACACCCTGCACACCG 61.172 55.000 0.00 0.00 0.00 4.94
84 85 5.685520 AAAAGAAGAGGTGGGATCTACTC 57.314 43.478 0.00 0.00 0.00 2.59
85 86 3.322191 AGAAGAGGTGGGATCTACTCC 57.678 52.381 0.00 0.00 44.11 3.85
94 95 2.368311 GGATCTACTCCCTCCGTTCT 57.632 55.000 0.00 0.00 38.19 3.01
95 96 2.668625 GGATCTACTCCCTCCGTTCTT 58.331 52.381 0.00 0.00 38.19 2.52
96 97 3.830121 GGATCTACTCCCTCCGTTCTTA 58.170 50.000 0.00 0.00 38.19 2.10
97 98 4.213513 GGATCTACTCCCTCCGTTCTTAA 58.786 47.826 0.00 0.00 38.19 1.85
98 99 4.648307 GGATCTACTCCCTCCGTTCTTAAA 59.352 45.833 0.00 0.00 38.19 1.52
99 100 5.304871 GGATCTACTCCCTCCGTTCTTAAAT 59.695 44.000 0.00 0.00 38.19 1.40
100 101 6.492772 GGATCTACTCCCTCCGTTCTTAAATA 59.507 42.308 0.00 0.00 38.19 1.40
101 102 7.178805 GGATCTACTCCCTCCGTTCTTAAATAT 59.821 40.741 0.00 0.00 38.19 1.28
102 103 9.240734 GATCTACTCCCTCCGTTCTTAAATATA 57.759 37.037 0.00 0.00 0.00 0.86
103 104 9.597681 ATCTACTCCCTCCGTTCTTAAATATAA 57.402 33.333 0.00 0.00 0.00 0.98
104 105 9.075678 TCTACTCCCTCCGTTCTTAAATATAAG 57.924 37.037 0.00 0.00 39.97 1.73
105 106 7.672122 ACTCCCTCCGTTCTTAAATATAAGT 57.328 36.000 0.00 0.00 39.65 2.24
106 107 7.724287 ACTCCCTCCGTTCTTAAATATAAGTC 58.276 38.462 0.00 0.00 39.65 3.01
107 108 7.564292 ACTCCCTCCGTTCTTAAATATAAGTCT 59.436 37.037 0.00 0.00 39.65 3.24
108 109 8.315220 TCCCTCCGTTCTTAAATATAAGTCTT 57.685 34.615 0.00 0.00 39.65 3.01
109 110 8.765517 TCCCTCCGTTCTTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 39.65 2.52
110 111 8.827677 CCCTCCGTTCTTAAATATAAGTCTTTG 58.172 37.037 0.00 0.00 39.65 2.77
111 112 9.379791 CCTCCGTTCTTAAATATAAGTCTTTGT 57.620 33.333 0.00 0.00 39.65 2.83
128 129 8.367660 AGTCTTTGTAGAGATTTCACTATGGA 57.632 34.615 0.00 0.00 0.00 3.41
129 130 8.986991 AGTCTTTGTAGAGATTTCACTATGGAT 58.013 33.333 0.00 0.00 0.00 3.41
130 131 9.255304 GTCTTTGTAGAGATTTCACTATGGATC 57.745 37.037 0.00 0.00 0.00 3.36
131 132 8.981659 TCTTTGTAGAGATTTCACTATGGATCA 58.018 33.333 0.00 0.00 0.00 2.92
132 133 8.948631 TTTGTAGAGATTTCACTATGGATCAC 57.051 34.615 0.00 0.00 0.00 3.06
133 134 7.660030 TGTAGAGATTTCACTATGGATCACA 57.340 36.000 0.00 0.00 0.00 3.58
134 135 8.255111 TGTAGAGATTTCACTATGGATCACAT 57.745 34.615 0.00 0.00 43.68 3.21
135 136 9.367160 TGTAGAGATTTCACTATGGATCACATA 57.633 33.333 0.00 0.00 41.03 2.29
136 137 9.632807 GTAGAGATTTCACTATGGATCACATAC 57.367 37.037 0.00 0.00 41.03 2.39
137 138 7.374272 AGAGATTTCACTATGGATCACATACG 58.626 38.462 0.00 0.00 41.03 3.06
138 139 7.231519 AGAGATTTCACTATGGATCACATACGA 59.768 37.037 0.00 0.00 41.03 3.43
139 140 7.726216 AGATTTCACTATGGATCACATACGAA 58.274 34.615 0.00 2.20 41.03 3.85
140 141 8.370940 AGATTTCACTATGGATCACATACGAAT 58.629 33.333 0.00 0.00 41.03 3.34
141 142 7.713764 TTTCACTATGGATCACATACGAATG 57.286 36.000 0.00 0.00 41.03 2.67
143 144 7.519032 TCACTATGGATCACATACGAATGTA 57.481 36.000 0.00 0.00 44.70 2.29
144 145 8.122472 TCACTATGGATCACATACGAATGTAT 57.878 34.615 0.00 0.00 44.70 2.29
184 185 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
185 186 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
186 187 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
187 188 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
188 189 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
189 190 9.031360 GTAGATTCACTCATTTTGCTTCGTATA 57.969 33.333 0.00 0.00 0.00 1.47
190 191 8.668510 AGATTCACTCATTTTGCTTCGTATAT 57.331 30.769 0.00 0.00 0.00 0.86
191 192 9.764363 AGATTCACTCATTTTGCTTCGTATATA 57.236 29.630 0.00 0.00 0.00 0.86
193 194 8.942338 TTCACTCATTTTGCTTCGTATATAGT 57.058 30.769 0.00 0.00 0.00 2.12
194 195 8.942338 TCACTCATTTTGCTTCGTATATAGTT 57.058 30.769 0.00 0.00 0.00 2.24
195 196 9.378551 TCACTCATTTTGCTTCGTATATAGTTT 57.621 29.630 0.00 0.00 0.00 2.66
240 241 9.411189 AGACTTATATTTAGAAACGGAGAGAGT 57.589 33.333 0.00 0.00 0.00 3.24
241 242 9.453325 GACTTATATTTAGAAACGGAGAGAGTG 57.547 37.037 0.00 0.00 0.00 3.51
281 282 0.030235 GGTGGGTTTTGAACGAGTGC 59.970 55.000 0.00 0.00 0.00 4.40
287 288 3.547413 GGGTTTTGAACGAGTGCAGTAAC 60.547 47.826 0.00 0.00 0.00 2.50
326 328 1.507141 CGCGGGTCCAATTATGAGCC 61.507 60.000 12.97 12.97 44.94 4.70
356 358 0.540923 GCTCTCTCCTGTGCCAATCT 59.459 55.000 0.00 0.00 0.00 2.40
370 372 7.040823 CCTGTGCCAATCTTCCTAATAATTCTC 60.041 40.741 0.00 0.00 0.00 2.87
372 374 7.500227 TGTGCCAATCTTCCTAATAATTCTCTG 59.500 37.037 0.00 0.00 0.00 3.35
374 376 8.274322 TGCCAATCTTCCTAATAATTCTCTGAA 58.726 33.333 0.00 0.00 0.00 3.02
406 408 2.279741 TGTCCATCAAGAATAGTGCGC 58.720 47.619 0.00 0.00 0.00 6.09
409 411 2.016318 CCATCAAGAATAGTGCGCCAA 58.984 47.619 4.18 0.00 0.00 4.52
447 449 2.229062 GCCCTAGTTCAGCTTCCAAAAC 59.771 50.000 0.00 0.00 0.00 2.43
487 489 8.492673 AGTATATCGACTTGAGAATTTTTGCA 57.507 30.769 0.00 0.00 0.00 4.08
494 496 4.405358 ACTTGAGAATTTTTGCACCAAGGA 59.595 37.500 0.00 0.00 35.25 3.36
495 497 5.104982 ACTTGAGAATTTTTGCACCAAGGAA 60.105 36.000 0.00 0.00 35.25 3.36
508 510 1.675552 CAAGGAAAGTTGGTCCGTGT 58.324 50.000 2.37 0.00 39.12 4.49
513 515 2.215196 GAAAGTTGGTCCGTGTAGCAA 58.785 47.619 0.00 0.00 34.65 3.91
524 527 5.413499 GTCCGTGTAGCAACTTAAGGATTA 58.587 41.667 7.53 0.00 0.00 1.75
543 546 1.494960 ACCTGGAAAGCAAAGCCAAA 58.505 45.000 0.00 0.00 0.00 3.28
558 561 7.601508 AGCAAAGCCAAATTAAAGATCTTCAAG 59.398 33.333 8.78 0.00 0.00 3.02
574 577 1.014564 CAAGTCTCGAAAGCCCGGAC 61.015 60.000 0.73 0.00 33.25 4.79
576 579 2.602267 TCTCGAAAGCCCGGACCA 60.602 61.111 0.73 0.00 0.00 4.02
578 581 3.234630 CTCGAAAGCCCGGACCACA 62.235 63.158 0.73 0.00 0.00 4.17
579 582 2.281208 CGAAAGCCCGGACCACAA 60.281 61.111 0.73 0.00 0.00 3.33
623 682 3.136443 ACAATCTCTGAAGACACCCAACA 59.864 43.478 0.00 0.00 33.32 3.33
624 683 4.202503 ACAATCTCTGAAGACACCCAACAT 60.203 41.667 0.00 0.00 33.32 2.71
625 684 3.407424 TCTCTGAAGACACCCAACATG 57.593 47.619 0.00 0.00 0.00 3.21
626 685 2.972021 TCTCTGAAGACACCCAACATGA 59.028 45.455 0.00 0.00 0.00 3.07
643 702 5.097742 ACATGATGACGGTAGAAAATCCA 57.902 39.130 0.00 0.00 0.00 3.41
656 715 1.176527 AAATCCATTGCTGGGTGACG 58.823 50.000 0.00 0.00 43.34 4.35
661 720 1.068434 CCATTGCTGGGTGACGTTTTT 59.932 47.619 0.00 0.00 39.04 1.94
704 763 3.365535 GCGGATGCTGGGTTTTGT 58.634 55.556 0.00 0.00 38.39 2.83
705 764 1.665442 GCGGATGCTGGGTTTTGTT 59.335 52.632 0.00 0.00 38.39 2.83
707 766 1.476488 GCGGATGCTGGGTTTTGTTAT 59.524 47.619 0.00 0.00 38.39 1.89
709 768 3.129638 GCGGATGCTGGGTTTTGTTATTA 59.870 43.478 0.00 0.00 38.39 0.98
714 773 3.181416 TGCTGGGTTTTGTTATTAGGGGT 60.181 43.478 0.00 0.00 0.00 4.95
715 774 3.835978 GCTGGGTTTTGTTATTAGGGGTT 59.164 43.478 0.00 0.00 0.00 4.11
716 775 4.322424 GCTGGGTTTTGTTATTAGGGGTTG 60.322 45.833 0.00 0.00 0.00 3.77
717 776 5.076057 TGGGTTTTGTTATTAGGGGTTGA 57.924 39.130 0.00 0.00 0.00 3.18
718 777 5.081032 TGGGTTTTGTTATTAGGGGTTGAG 58.919 41.667 0.00 0.00 0.00 3.02
720 779 4.464951 GGTTTTGTTATTAGGGGTTGAGGG 59.535 45.833 0.00 0.00 0.00 4.30
722 781 3.223940 TGTTATTAGGGGTTGAGGGGA 57.776 47.619 0.00 0.00 0.00 4.81
723 782 3.754976 TGTTATTAGGGGTTGAGGGGAT 58.245 45.455 0.00 0.00 0.00 3.85
724 783 3.461831 TGTTATTAGGGGTTGAGGGGATG 59.538 47.826 0.00 0.00 0.00 3.51
725 784 0.853530 ATTAGGGGTTGAGGGGATGC 59.146 55.000 0.00 0.00 0.00 3.91
726 785 1.286305 TTAGGGGTTGAGGGGATGCC 61.286 60.000 0.00 0.00 0.00 4.40
727 786 4.143301 GGGGTTGAGGGGATGCCC 62.143 72.222 15.97 15.97 44.51 5.36
756 815 2.632377 TGAGAAATCTTGACGGGATGC 58.368 47.619 0.00 0.00 0.00 3.91
757 816 1.943340 GAGAAATCTTGACGGGATGCC 59.057 52.381 0.00 0.00 0.00 4.40
784 843 6.370166 GGTGACTGTAGAGAAAGAAGGAATTG 59.630 42.308 0.00 0.00 0.00 2.32
785 844 6.370166 GTGACTGTAGAGAAAGAAGGAATTGG 59.630 42.308 0.00 0.00 0.00 3.16
850 909 2.741145 GGTAGAGACATGGTGACTCCT 58.259 52.381 0.00 0.00 39.41 3.69
851 910 2.691011 GGTAGAGACATGGTGACTCCTC 59.309 54.545 0.00 0.00 39.41 3.71
852 911 1.859302 AGAGACATGGTGACTCCTCC 58.141 55.000 0.00 0.00 39.41 4.30
854 913 2.114616 GAGACATGGTGACTCCTCCAT 58.885 52.381 0.00 0.00 44.88 3.41
903 963 0.842467 CTGGTGAGGGGAAGGAAGGT 60.842 60.000 0.00 0.00 0.00 3.50
933 1019 1.410882 GAGAGCAGTGTAGGGACATCC 59.589 57.143 0.00 0.00 38.04 3.51
1283 1373 1.564207 GGCCTCGTGTAATTCGTACC 58.436 55.000 0.00 0.00 30.94 3.34
1294 1384 1.793134 ATTCGTACCTAGGCGAGCCG 61.793 60.000 9.30 4.26 41.95 5.52
1352 1442 7.230712 TGGCAGTATCGATATACAGAGAGAAAA 59.769 37.037 8.66 0.00 40.49 2.29
1394 1484 2.901192 TCGAACTTGGAGGGTTCATGTA 59.099 45.455 7.24 0.00 41.99 2.29
1443 1533 1.674441 TCCGTCGTCAATGTAGCCTAG 59.326 52.381 0.00 0.00 0.00 3.02
1446 1536 3.065786 CCGTCGTCAATGTAGCCTAGTTA 59.934 47.826 0.00 0.00 0.00 2.24
1551 1641 2.418976 GGCTTGACAAATTAGGTCGGAC 59.581 50.000 0.00 0.00 38.10 4.79
1652 1742 8.267183 TCTTTTGTGCAATCATCTCTTAGGATA 58.733 33.333 0.00 0.00 0.00 2.59
1677 1767 3.002042 CGCTGAAATTGTGGCTCAGATAG 59.998 47.826 8.03 0.00 39.15 2.08
1714 1804 8.897752 ACATTTGTTATCTAGATTTTGCTCTCC 58.102 33.333 11.25 0.00 0.00 3.71
1715 1805 7.539712 TTTGTTATCTAGATTTTGCTCTCCG 57.460 36.000 11.25 0.00 0.00 4.63
1716 1806 5.601662 TGTTATCTAGATTTTGCTCTCCGG 58.398 41.667 11.25 0.00 0.00 5.14
1717 1807 5.362717 TGTTATCTAGATTTTGCTCTCCGGA 59.637 40.000 11.25 2.93 0.00 5.14
1749 2101 4.263905 TGCTTCTGGTGATGGGATAAACTT 60.264 41.667 0.00 0.00 0.00 2.66
1786 3129 6.833933 TGCTGATTCTAGGATGTGACTAGTAA 59.166 38.462 0.00 0.00 39.13 2.24
1907 3260 4.080638 TGTTACATCCTGCCATGTGTGATA 60.081 41.667 3.84 0.00 37.57 2.15
1978 3342 4.341366 AGAACCATTTTCCTGGCAAAAG 57.659 40.909 0.00 0.00 40.15 2.27
2089 3453 1.987770 GCACTTCCATTTCATTGTGCG 59.012 47.619 0.00 0.00 40.67 5.34
2130 3495 6.459670 TGGTAAGCTGATAGTGAAATCGTA 57.540 37.500 0.00 0.00 0.00 3.43
2316 3681 3.678915 ATGCTTTTGTTTGTTGCAAGC 57.321 38.095 0.00 0.00 40.29 4.01
2362 3727 7.981225 AGCAAGGCAATAATTACCTAAACATTG 59.019 33.333 0.00 0.00 32.08 2.82
2363 3728 7.254421 GCAAGGCAATAATTACCTAAACATTGC 60.254 37.037 8.97 8.97 41.14 3.56
2373 3739 1.818674 CTAAACATTGCACCCTCCCAC 59.181 52.381 0.00 0.00 0.00 4.61
2403 3769 7.333528 TGACTTGTTCTAAAAGCATGAGTTT 57.666 32.000 0.00 0.00 0.00 2.66
2531 3897 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2534 3900 3.959449 ACTCCCTCCGTTCCTAAATACTC 59.041 47.826 0.00 0.00 0.00 2.59
2536 3902 2.367894 CCCTCCGTTCCTAAATACTCCC 59.632 54.545 0.00 0.00 0.00 4.30
2538 3904 3.321396 CCTCCGTTCCTAAATACTCCCTC 59.679 52.174 0.00 0.00 0.00 4.30
2539 3905 3.303049 TCCGTTCCTAAATACTCCCTCC 58.697 50.000 0.00 0.00 0.00 4.30
2540 3906 2.367894 CCGTTCCTAAATACTCCCTCCC 59.632 54.545 0.00 0.00 0.00 4.30
2541 3907 2.367894 CGTTCCTAAATACTCCCTCCCC 59.632 54.545 0.00 0.00 0.00 4.81
2542 3908 3.666568 GTTCCTAAATACTCCCTCCCCT 58.333 50.000 0.00 0.00 0.00 4.79
2544 3910 5.222086 GTTCCTAAATACTCCCTCCCCTAA 58.778 45.833 0.00 0.00 0.00 2.69
2546 3912 6.064618 TCCTAAATACTCCCTCCCCTAAAT 57.935 41.667 0.00 0.00 0.00 1.40
2547 3913 7.196180 TCCTAAATACTCCCTCCCCTAAATA 57.804 40.000 0.00 0.00 0.00 1.40
2548 3914 7.021251 TCCTAAATACTCCCTCCCCTAAATAC 58.979 42.308 0.00 0.00 0.00 1.89
2549 3915 7.023744 CCTAAATACTCCCTCCCCTAAATACT 58.976 42.308 0.00 0.00 0.00 2.12
2551 3917 3.347759 ACTCCCTCCCCTAAATACTCC 57.652 52.381 0.00 0.00 0.00 3.85
2553 3919 2.182536 CTCCCTCCCCTAAATACTCCCT 59.817 54.545 0.00 0.00 0.00 4.20
2554 3920 2.181642 TCCCTCCCCTAAATACTCCCTC 59.818 54.545 0.00 0.00 0.00 4.30
2555 3921 2.622210 CCTCCCCTAAATACTCCCTCC 58.378 57.143 0.00 0.00 0.00 4.30
2557 3923 1.577242 TCCCCTAAATACTCCCTCCGT 59.423 52.381 0.00 0.00 0.00 4.69
2558 3924 1.969208 CCCCTAAATACTCCCTCCGTC 59.031 57.143 0.00 0.00 0.00 4.79
2559 3925 1.969208 CCCTAAATACTCCCTCCGTCC 59.031 57.143 0.00 0.00 0.00 4.79
2560 3926 2.674420 CCTAAATACTCCCTCCGTCCA 58.326 52.381 0.00 0.00 0.00 4.02
2562 3928 3.646637 CCTAAATACTCCCTCCGTCCAAT 59.353 47.826 0.00 0.00 0.00 3.16
2563 3929 4.836736 CCTAAATACTCCCTCCGTCCAATA 59.163 45.833 0.00 0.00 0.00 1.90
2565 3931 5.906772 AAATACTCCCTCCGTCCAATAAT 57.093 39.130 0.00 0.00 0.00 1.28
2566 3932 4.891992 ATACTCCCTCCGTCCAATAATG 57.108 45.455 0.00 0.00 0.00 1.90
2567 3933 2.478292 ACTCCCTCCGTCCAATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
2568 3934 3.649843 ACTCCCTCCGTCCAATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
2569 3935 4.035112 ACTCCCTCCGTCCAATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
2570 3936 4.101119 ACTCCCTCCGTCCAATAATGTAAG 59.899 45.833 0.00 0.00 0.00 2.34
2571 3937 4.291792 TCCCTCCGTCCAATAATGTAAGA 58.708 43.478 0.00 0.00 0.00 2.10
2572 3938 4.100498 TCCCTCCGTCCAATAATGTAAGAC 59.900 45.833 0.00 0.00 0.00 3.01
2574 3940 4.441079 CCTCCGTCCAATAATGTAAGACGT 60.441 45.833 9.63 0.00 46.62 4.34
2575 3941 5.075858 TCCGTCCAATAATGTAAGACGTT 57.924 39.130 9.63 0.00 46.62 3.99
2576 3942 5.481105 TCCGTCCAATAATGTAAGACGTTT 58.519 37.500 9.63 0.00 46.62 3.60
2577 3943 5.933463 TCCGTCCAATAATGTAAGACGTTTT 59.067 36.000 9.63 0.00 46.62 2.43
2578 3944 6.019152 CCGTCCAATAATGTAAGACGTTTTG 58.981 40.000 0.83 0.00 46.62 2.44
2579 3945 6.347888 CCGTCCAATAATGTAAGACGTTTTGT 60.348 38.462 0.83 0.00 46.62 2.83
2580 3946 6.518395 CGTCCAATAATGTAAGACGTTTTGTG 59.482 38.462 0.83 0.00 43.89 3.33
2581 3947 7.569774 CGTCCAATAATGTAAGACGTTTTGTGA 60.570 37.037 0.83 0.00 43.89 3.58
2582 3948 7.532884 GTCCAATAATGTAAGACGTTTTGTGAC 59.467 37.037 0.83 0.00 0.00 3.67
2583 3949 7.226918 TCCAATAATGTAAGACGTTTTGTGACA 59.773 33.333 0.83 0.00 0.00 3.58
2584 3950 7.322699 CCAATAATGTAAGACGTTTTGTGACAC 59.677 37.037 0.83 0.00 0.00 3.67
2585 3951 7.724305 ATAATGTAAGACGTTTTGTGACACT 57.276 32.000 7.20 0.00 0.00 3.55
2586 3952 8.821147 ATAATGTAAGACGTTTTGTGACACTA 57.179 30.769 7.20 0.00 0.00 2.74
2587 3953 7.724305 AATGTAAGACGTTTTGTGACACTAT 57.276 32.000 7.20 0.00 0.00 2.12
2588 3954 8.821147 AATGTAAGACGTTTTGTGACACTATA 57.179 30.769 7.20 0.00 0.00 1.31
2589 3955 8.997621 ATGTAAGACGTTTTGTGACACTATAT 57.002 30.769 7.20 0.00 0.00 0.86
2590 3956 8.821147 TGTAAGACGTTTTGTGACACTATATT 57.179 30.769 7.20 0.00 0.00 1.28
2591 3957 9.911138 TGTAAGACGTTTTGTGACACTATATTA 57.089 29.630 7.20 0.00 0.00 0.98
2620 3986 3.994931 AACCGTCCTATATTATGGGCC 57.005 47.619 0.00 0.00 0.00 5.80
2621 3987 1.829222 ACCGTCCTATATTATGGGCCG 59.171 52.381 2.86 2.86 0.00 6.13
2622 3988 1.138266 CCGTCCTATATTATGGGCCGG 59.862 57.143 13.14 13.14 34.12 6.13
2623 3989 2.104967 CGTCCTATATTATGGGCCGGA 58.895 52.381 5.05 0.00 0.00 5.14
2624 3990 2.100916 CGTCCTATATTATGGGCCGGAG 59.899 54.545 5.05 0.00 0.00 4.63
2625 3991 3.105283 GTCCTATATTATGGGCCGGAGT 58.895 50.000 5.05 0.00 0.00 3.85
2626 3992 3.104512 TCCTATATTATGGGCCGGAGTG 58.895 50.000 5.05 0.00 0.00 3.51
2627 3993 3.104512 CCTATATTATGGGCCGGAGTGA 58.895 50.000 5.05 0.00 0.00 3.41
2628 3994 3.133003 CCTATATTATGGGCCGGAGTGAG 59.867 52.174 5.05 0.00 0.00 3.51
2702 4068 8.954350 TGTAGACATACTTTAGAGTGTACTTCC 58.046 37.037 0.00 0.00 36.60 3.46
2703 4069 9.176460 GTAGACATACTTTAGAGTGTACTTCCT 57.824 37.037 0.00 0.00 36.60 3.36
2704 4070 8.283699 AGACATACTTTAGAGTGTACTTCCTC 57.716 38.462 0.00 0.00 36.60 3.71
2705 4071 7.339976 AGACATACTTTAGAGTGTACTTCCTCC 59.660 40.741 0.00 0.00 36.60 4.30
2706 4072 6.095160 ACATACTTTAGAGTGTACTTCCTCCG 59.905 42.308 0.00 0.00 36.60 4.63
2707 4073 4.405548 ACTTTAGAGTGTACTTCCTCCGT 58.594 43.478 0.00 0.00 33.99 4.69
2708 4074 5.564550 ACTTTAGAGTGTACTTCCTCCGTA 58.435 41.667 0.00 0.00 33.99 4.02
2709 4075 6.006449 ACTTTAGAGTGTACTTCCTCCGTAA 58.994 40.000 0.00 0.00 33.99 3.18
2710 4076 6.491403 ACTTTAGAGTGTACTTCCTCCGTAAA 59.509 38.462 0.00 0.00 33.99 2.01
2711 4077 4.780275 AGAGTGTACTTCCTCCGTAAAC 57.220 45.455 0.00 0.00 0.00 2.01
2712 4078 4.405548 AGAGTGTACTTCCTCCGTAAACT 58.594 43.478 0.00 0.00 37.95 2.66
2713 4079 5.564550 AGAGTGTACTTCCTCCGTAAACTA 58.435 41.667 0.00 0.00 35.97 2.24
2714 4080 6.006449 AGAGTGTACTTCCTCCGTAAACTAA 58.994 40.000 0.00 0.00 35.97 2.24
2715 4081 6.662663 AGAGTGTACTTCCTCCGTAAACTAAT 59.337 38.462 0.00 0.00 35.97 1.73
2716 4082 7.831193 AGAGTGTACTTCCTCCGTAAACTAATA 59.169 37.037 0.00 0.00 35.97 0.98
2717 4083 8.530804 AGTGTACTTCCTCCGTAAACTAATAT 57.469 34.615 0.00 0.00 34.49 1.28
2718 4084 9.632638 AGTGTACTTCCTCCGTAAACTAATATA 57.367 33.333 0.00 0.00 34.49 0.86
2723 4089 8.358895 ACTTCCTCCGTAAACTAATATAAGAGC 58.641 37.037 0.00 0.00 0.00 4.09
2724 4090 6.906659 TCCTCCGTAAACTAATATAAGAGCG 58.093 40.000 0.00 0.00 0.00 5.03
2725 4091 6.488006 TCCTCCGTAAACTAATATAAGAGCGT 59.512 38.462 0.00 0.00 0.00 5.07
2726 4092 7.013655 TCCTCCGTAAACTAATATAAGAGCGTT 59.986 37.037 0.00 0.00 0.00 4.84
2727 4093 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2728 4094 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2729 4095 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2730 4096 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2744 4110 9.654663 AAGAGCGTTTAGATCACTAAAATAGTT 57.345 29.630 0.00 0.00 45.97 2.24
2757 4123 9.339850 TCACTAAAATAGTTATCTAGACGCTCT 57.660 33.333 0.00 0.00 36.76 4.09
2758 4124 9.953697 CACTAAAATAGTTATCTAGACGCTCTT 57.046 33.333 0.00 0.00 36.76 2.85
2775 4141 8.569641 AGACGCTCTTATATTAGTTTACAGAGG 58.430 37.037 0.00 0.00 0.00 3.69
2776 4142 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2777 4143 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
2778 4144 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
2779 4145 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
2802 4168 0.315886 TTCGCTCACTTTGCTCCGTA 59.684 50.000 0.00 0.00 0.00 4.02
2822 4188 5.291128 CCGTATGTAGTCACTTGTTGGAATC 59.709 44.000 0.00 0.00 0.00 2.52
2831 4205 6.812160 AGTCACTTGTTGGAATCGACTTATAC 59.188 38.462 0.00 0.00 0.00 1.47
2835 4209 8.808529 CACTTGTTGGAATCGACTTATACTTAG 58.191 37.037 0.00 0.00 0.00 2.18
2845 4219 6.115446 TCGACTTATACTTAGAAACGGAGGA 58.885 40.000 0.00 0.00 0.00 3.71
2851 4225 4.453177 ACTTAGAAACGGAGGAAGTAGC 57.547 45.455 0.00 0.00 0.00 3.58
2860 4263 1.134670 GGAGGAAGTAGCGAGCAACAT 60.135 52.381 0.00 0.00 0.00 2.71
2923 4326 1.186917 TTGGCATTGGCACTTCAGGG 61.187 55.000 13.07 0.00 43.71 4.45
2950 4353 2.290960 GGGTGGGCTTGTCTTCAGTTAT 60.291 50.000 0.00 0.00 0.00 1.89
2959 4362 7.255486 GGGCTTGTCTTCAGTTATTGTTACTTT 60.255 37.037 0.00 0.00 0.00 2.66
2972 4375 4.551702 TGTTACTTTGCTAGCTCATCCA 57.448 40.909 17.23 1.37 0.00 3.41
2999 4410 3.024547 TGTTCGGATTCTACCTCCTCAG 58.975 50.000 0.00 0.00 0.00 3.35
3100 4515 0.523072 AGTGCAAATGGTGTGATCGC 59.477 50.000 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.016444 GGTGTTCATTCCCTTTGATGCTA 58.984 43.478 0.00 0.00 0.00 3.49
82 83 7.953752 AGACTTATATTTAAGAACGGAGGGAG 58.046 38.462 9.58 0.00 38.56 4.30
83 84 7.909485 AGACTTATATTTAAGAACGGAGGGA 57.091 36.000 9.58 0.00 38.56 4.20
84 85 8.827677 CAAAGACTTATATTTAAGAACGGAGGG 58.172 37.037 9.58 0.00 38.56 4.30
85 86 9.379791 ACAAAGACTTATATTTAAGAACGGAGG 57.620 33.333 9.58 0.00 38.56 4.30
102 103 8.816894 TCCATAGTGAAATCTCTACAAAGACTT 58.183 33.333 0.00 0.00 0.00 3.01
103 104 8.367660 TCCATAGTGAAATCTCTACAAAGACT 57.632 34.615 0.00 0.00 0.00 3.24
104 105 9.255304 GATCCATAGTGAAATCTCTACAAAGAC 57.745 37.037 0.00 0.00 0.00 3.01
105 106 8.981659 TGATCCATAGTGAAATCTCTACAAAGA 58.018 33.333 0.00 0.00 0.00 2.52
106 107 9.039870 GTGATCCATAGTGAAATCTCTACAAAG 57.960 37.037 0.00 0.00 0.00 2.77
107 108 8.539544 TGTGATCCATAGTGAAATCTCTACAAA 58.460 33.333 0.00 0.00 0.00 2.83
108 109 8.078060 TGTGATCCATAGTGAAATCTCTACAA 57.922 34.615 0.00 0.00 0.00 2.41
109 110 7.660030 TGTGATCCATAGTGAAATCTCTACA 57.340 36.000 0.00 0.00 0.00 2.74
110 111 9.632807 GTATGTGATCCATAGTGAAATCTCTAC 57.367 37.037 4.66 0.00 36.71 2.59
111 112 8.515414 CGTATGTGATCCATAGTGAAATCTCTA 58.485 37.037 4.66 0.00 36.71 2.43
112 113 7.231519 TCGTATGTGATCCATAGTGAAATCTCT 59.768 37.037 4.66 0.00 36.71 3.10
113 114 7.371159 TCGTATGTGATCCATAGTGAAATCTC 58.629 38.462 4.66 0.00 36.71 2.75
114 115 7.290110 TCGTATGTGATCCATAGTGAAATCT 57.710 36.000 4.66 0.00 36.71 2.40
115 116 7.946655 TTCGTATGTGATCCATAGTGAAATC 57.053 36.000 4.66 0.00 36.71 2.17
116 117 7.933577 ACATTCGTATGTGATCCATAGTGAAAT 59.066 33.333 6.89 9.18 43.29 2.17
117 118 7.272244 ACATTCGTATGTGATCCATAGTGAAA 58.728 34.615 6.89 6.51 43.29 2.69
118 119 6.816136 ACATTCGTATGTGATCCATAGTGAA 58.184 36.000 6.89 14.34 43.29 3.18
119 120 6.405278 ACATTCGTATGTGATCCATAGTGA 57.595 37.500 6.89 4.16 43.29 3.41
120 121 8.177980 CATACATTCGTATGTGATCCATAGTG 57.822 38.462 16.91 0.39 46.70 2.74
161 162 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
162 163 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
163 164 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
164 165 9.764363 ATATACGAAGCAAAATGAGTGAATCTA 57.236 29.630 0.00 0.00 0.00 1.98
165 166 6.992063 ATACGAAGCAAAATGAGTGAATCT 57.008 33.333 0.00 0.00 0.00 2.40
167 168 9.547753 ACTATATACGAAGCAAAATGAGTGAAT 57.452 29.630 0.00 0.00 0.00 2.57
168 169 8.942338 ACTATATACGAAGCAAAATGAGTGAA 57.058 30.769 0.00 0.00 0.00 3.18
169 170 8.942338 AACTATATACGAAGCAAAATGAGTGA 57.058 30.769 0.00 0.00 0.00 3.41
214 215 9.411189 ACTCTCTCCGTTTCTAAATATAAGTCT 57.589 33.333 0.00 0.00 0.00 3.24
215 216 9.453325 CACTCTCTCCGTTTCTAAATATAAGTC 57.547 37.037 0.00 0.00 0.00 3.01
216 217 8.968969 ACACTCTCTCCGTTTCTAAATATAAGT 58.031 33.333 0.00 0.00 0.00 2.24
217 218 9.239002 CACACTCTCTCCGTTTCTAAATATAAG 57.761 37.037 0.00 0.00 0.00 1.73
218 219 8.963725 TCACACTCTCTCCGTTTCTAAATATAA 58.036 33.333 0.00 0.00 0.00 0.98
219 220 8.515695 TCACACTCTCTCCGTTTCTAAATATA 57.484 34.615 0.00 0.00 0.00 0.86
220 221 7.406031 TCACACTCTCTCCGTTTCTAAATAT 57.594 36.000 0.00 0.00 0.00 1.28
221 222 6.625300 GCTCACACTCTCTCCGTTTCTAAATA 60.625 42.308 0.00 0.00 0.00 1.40
222 223 5.715070 CTCACACTCTCTCCGTTTCTAAAT 58.285 41.667 0.00 0.00 0.00 1.40
223 224 4.558898 GCTCACACTCTCTCCGTTTCTAAA 60.559 45.833 0.00 0.00 0.00 1.85
224 225 3.057456 GCTCACACTCTCTCCGTTTCTAA 60.057 47.826 0.00 0.00 0.00 2.10
225 226 2.488545 GCTCACACTCTCTCCGTTTCTA 59.511 50.000 0.00 0.00 0.00 2.10
226 227 1.271102 GCTCACACTCTCTCCGTTTCT 59.729 52.381 0.00 0.00 0.00 2.52
227 228 1.271102 AGCTCACACTCTCTCCGTTTC 59.729 52.381 0.00 0.00 0.00 2.78
228 229 1.333177 AGCTCACACTCTCTCCGTTT 58.667 50.000 0.00 0.00 0.00 3.60
229 230 1.000283 CAAGCTCACACTCTCTCCGTT 60.000 52.381 0.00 0.00 0.00 4.44
230 231 0.600557 CAAGCTCACACTCTCTCCGT 59.399 55.000 0.00 0.00 0.00 4.69
231 232 0.108898 CCAAGCTCACACTCTCTCCG 60.109 60.000 0.00 0.00 0.00 4.63
232 233 0.390998 GCCAAGCTCACACTCTCTCC 60.391 60.000 0.00 0.00 0.00 3.71
233 234 0.390998 GGCCAAGCTCACACTCTCTC 60.391 60.000 0.00 0.00 0.00 3.20
234 235 1.123861 TGGCCAAGCTCACACTCTCT 61.124 55.000 0.61 0.00 0.00 3.10
235 236 0.952984 GTGGCCAAGCTCACACTCTC 60.953 60.000 7.24 0.00 32.73 3.20
236 237 1.072159 GTGGCCAAGCTCACACTCT 59.928 57.895 7.24 0.00 32.73 3.24
237 238 0.819259 TTGTGGCCAAGCTCACACTC 60.819 55.000 7.24 0.00 38.61 3.51
238 239 0.395586 TTTGTGGCCAAGCTCACACT 60.396 50.000 7.24 0.00 38.61 3.55
239 240 0.249031 GTTTGTGGCCAAGCTCACAC 60.249 55.000 7.24 0.00 38.61 3.82
240 241 0.395586 AGTTTGTGGCCAAGCTCACA 60.396 50.000 7.24 0.00 37.56 3.58
241 242 2.419057 AGTTTGTGGCCAAGCTCAC 58.581 52.632 7.24 0.00 37.56 3.51
281 282 1.467342 GCTACAAAAGGCCGGTTACTG 59.533 52.381 1.90 0.00 0.00 2.74
287 288 1.648467 GAGCAGCTACAAAAGGCCGG 61.648 60.000 0.00 0.00 0.00 6.13
333 335 0.694771 TGGCACAGGAGAGAGCAAAT 59.305 50.000 0.00 0.00 0.00 2.32
370 372 8.625786 TTGATGGACATGATATTATGGTTCAG 57.374 34.615 11.76 0.00 32.32 3.02
372 374 8.853077 TCTTGATGGACATGATATTATGGTTC 57.147 34.615 11.76 1.79 32.32 3.62
386 388 2.279741 GCGCACTATTCTTGATGGACA 58.720 47.619 0.30 0.00 0.00 4.02
402 404 0.322366 TCCATCACAGATTTGGCGCA 60.322 50.000 10.83 0.00 0.00 6.09
406 408 2.621998 GCCTCATCCATCACAGATTTGG 59.378 50.000 0.00 0.00 0.00 3.28
409 411 1.144503 GGGCCTCATCCATCACAGATT 59.855 52.381 0.84 0.00 0.00 2.40
447 449 5.067023 TCGATATACTATCCAGCATGCTCTG 59.933 44.000 19.68 12.48 31.97 3.35
494 496 1.944709 GTTGCTACACGGACCAACTTT 59.055 47.619 0.00 0.00 35.80 2.66
495 497 1.140252 AGTTGCTACACGGACCAACTT 59.860 47.619 0.13 0.00 43.73 2.66
508 510 6.630203 TTCCAGGTAATCCTTAAGTTGCTA 57.370 37.500 0.97 0.00 43.07 3.49
513 515 5.514500 TGCTTTCCAGGTAATCCTTAAGT 57.486 39.130 0.97 0.00 43.07 2.24
524 527 1.494960 TTTGGCTTTGCTTTCCAGGT 58.505 45.000 0.00 0.00 0.00 4.00
528 531 6.875726 AGATCTTTAATTTGGCTTTGCTTTCC 59.124 34.615 0.00 0.00 0.00 3.13
543 546 7.065204 GGCTTTCGAGACTTGAAGATCTTTAAT 59.935 37.037 12.58 4.36 0.00 1.40
558 561 2.125633 GGTCCGGGCTTTCGAGAC 60.126 66.667 5.77 0.00 33.12 3.36
574 577 4.718940 AAAAAGGTGTCTTGAGTTGTGG 57.281 40.909 0.00 0.00 32.75 4.17
597 656 5.935945 TGGGTGTCTTCAGAGATTGTTAAA 58.064 37.500 0.00 0.00 33.70 1.52
600 659 4.137543 GTTGGGTGTCTTCAGAGATTGTT 58.862 43.478 0.00 0.00 33.70 2.83
610 669 2.416547 CGTCATCATGTTGGGTGTCTTC 59.583 50.000 3.98 0.00 0.00 2.87
623 682 5.009010 GCAATGGATTTTCTACCGTCATCAT 59.991 40.000 0.00 0.00 0.00 2.45
624 683 4.335315 GCAATGGATTTTCTACCGTCATCA 59.665 41.667 0.00 0.00 0.00 3.07
625 684 4.576463 AGCAATGGATTTTCTACCGTCATC 59.424 41.667 0.00 0.00 0.00 2.92
626 685 4.336433 CAGCAATGGATTTTCTACCGTCAT 59.664 41.667 0.00 0.00 0.00 3.06
688 747 3.866883 AATAACAAAACCCAGCATCCG 57.133 42.857 0.00 0.00 0.00 4.18
700 759 3.924072 TCCCCTCAACCCCTAATAACAAA 59.076 43.478 0.00 0.00 0.00 2.83
701 760 3.543661 TCCCCTCAACCCCTAATAACAA 58.456 45.455 0.00 0.00 0.00 2.83
703 762 3.750922 GCATCCCCTCAACCCCTAATAAC 60.751 52.174 0.00 0.00 0.00 1.89
704 763 2.445525 GCATCCCCTCAACCCCTAATAA 59.554 50.000 0.00 0.00 0.00 1.40
705 764 2.062636 GCATCCCCTCAACCCCTAATA 58.937 52.381 0.00 0.00 0.00 0.98
707 766 1.286305 GGCATCCCCTCAACCCCTAA 61.286 60.000 0.00 0.00 0.00 2.69
709 768 3.023735 GGCATCCCCTCAACCCCT 61.024 66.667 0.00 0.00 0.00 4.79
732 791 5.564651 GCATCCCGTCAAGATTTCTCAAAAA 60.565 40.000 0.00 0.00 0.00 1.94
733 792 4.082787 GCATCCCGTCAAGATTTCTCAAAA 60.083 41.667 0.00 0.00 0.00 2.44
734 793 3.440173 GCATCCCGTCAAGATTTCTCAAA 59.560 43.478 0.00 0.00 0.00 2.69
735 794 3.009723 GCATCCCGTCAAGATTTCTCAA 58.990 45.455 0.00 0.00 0.00 3.02
736 795 2.632377 GCATCCCGTCAAGATTTCTCA 58.368 47.619 0.00 0.00 0.00 3.27
737 796 1.943340 GGCATCCCGTCAAGATTTCTC 59.057 52.381 0.00 0.00 0.00 2.87
738 797 2.044123 GGCATCCCGTCAAGATTTCT 57.956 50.000 0.00 0.00 0.00 2.52
752 811 0.103208 CTCTACAGTCACCCGGCATC 59.897 60.000 0.00 0.00 0.00 3.91
756 815 2.168496 TCTTTCTCTACAGTCACCCGG 58.832 52.381 0.00 0.00 0.00 5.73
757 816 3.367498 CCTTCTTTCTCTACAGTCACCCG 60.367 52.174 0.00 0.00 0.00 5.28
765 824 4.018415 CCCCCAATTCCTTCTTTCTCTACA 60.018 45.833 0.00 0.00 0.00 2.74
850 909 1.128200 CGTACCATTCCCCTCATGGA 58.872 55.000 5.94 0.00 43.70 3.41
851 910 0.837272 ACGTACCATTCCCCTCATGG 59.163 55.000 0.00 0.00 46.07 3.66
852 911 1.475034 CCACGTACCATTCCCCTCATG 60.475 57.143 0.00 0.00 0.00 3.07
854 913 1.268992 CCCACGTACCATTCCCCTCA 61.269 60.000 0.00 0.00 0.00 3.86
903 963 1.354031 ACACTGCTCTCTCTCTCTCCA 59.646 52.381 0.00 0.00 0.00 3.86
933 1019 0.609406 TCTCTCCGGTGGTCACTCAG 60.609 60.000 0.00 0.00 0.00 3.35
937 1023 0.322636 TCTCTCTCTCCGGTGGTCAC 60.323 60.000 0.00 0.00 0.00 3.67
1294 1384 1.106285 AATGCCTGAAATTCCGGAGC 58.894 50.000 3.34 3.02 0.00 4.70
1352 1442 2.073816 GAACACATCGGGAACAATCGT 58.926 47.619 0.00 0.00 0.00 3.73
1443 1533 4.755411 TCAGAAGGTCGATGGTTCATAAC 58.245 43.478 0.00 0.00 0.00 1.89
1446 1536 3.981071 TTCAGAAGGTCGATGGTTCAT 57.019 42.857 0.00 0.00 0.00 2.57
1551 1641 5.747197 GCAATGAAATGGAGCATGTAAGAAG 59.253 40.000 0.00 0.00 0.00 2.85
1590 1680 7.169308 ACGATCCTTTACAATACGCTTATCAAG 59.831 37.037 0.00 0.00 0.00 3.02
1652 1742 1.160137 GAGCCACAATTTCAGCGACT 58.840 50.000 0.00 0.00 0.00 4.18
1677 1767 9.595823 TCTAGATAACAAATGTAAGTAGTTGGC 57.404 33.333 0.00 0.00 30.49 4.52
1749 2101 8.262601 TCCTAGAATCAGCAATTGTCCTAATA 57.737 34.615 7.40 0.00 0.00 0.98
1978 3342 4.120589 CGAAGCTGGTTCTAAGGTATTCC 58.879 47.826 16.54 0.00 32.33 3.01
2291 3656 6.456718 GCTTGCAACAAACAAAAGCATAAGAA 60.457 34.615 0.00 0.00 42.19 2.52
2309 3674 0.039256 GAACATGGAAGCGCTTGCAA 60.039 50.000 41.25 27.08 43.87 4.08
2316 3681 0.583438 CATAGCCGAACATGGAAGCG 59.417 55.000 0.00 0.00 0.00 4.68
2362 3727 3.017581 ATGGAGGTGGGAGGGTGC 61.018 66.667 0.00 0.00 0.00 5.01
2363 3728 1.616327 TCATGGAGGTGGGAGGGTG 60.616 63.158 0.00 0.00 0.00 4.61
2373 3739 4.761739 TGCTTTTAGAACAAGTCATGGAGG 59.238 41.667 0.00 0.00 0.00 4.30
2514 3880 3.303049 GGAGTATTTAGGAACGGAGGGA 58.697 50.000 0.00 0.00 0.00 4.20
2531 3897 2.090096 GGGAGTATTTAGGGGAGGGAGT 60.090 54.545 0.00 0.00 0.00 3.85
2534 3900 2.622210 GAGGGAGTATTTAGGGGAGGG 58.378 57.143 0.00 0.00 0.00 4.30
2536 3902 2.249139 CGGAGGGAGTATTTAGGGGAG 58.751 57.143 0.00 0.00 0.00 4.30
2538 3904 1.969208 GACGGAGGGAGTATTTAGGGG 59.031 57.143 0.00 0.00 0.00 4.79
2539 3905 1.969208 GGACGGAGGGAGTATTTAGGG 59.031 57.143 0.00 0.00 0.00 3.53
2540 3906 2.674420 TGGACGGAGGGAGTATTTAGG 58.326 52.381 0.00 0.00 0.00 2.69
2541 3907 4.957684 ATTGGACGGAGGGAGTATTTAG 57.042 45.455 0.00 0.00 0.00 1.85
2542 3908 6.328148 ACATTATTGGACGGAGGGAGTATTTA 59.672 38.462 0.00 0.00 0.00 1.40
2544 3910 4.658901 ACATTATTGGACGGAGGGAGTATT 59.341 41.667 0.00 0.00 0.00 1.89
2546 3912 3.649843 ACATTATTGGACGGAGGGAGTA 58.350 45.455 0.00 0.00 0.00 2.59
2547 3913 2.478292 ACATTATTGGACGGAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
2548 3914 4.344102 TCTTACATTATTGGACGGAGGGAG 59.656 45.833 0.00 0.00 0.00 4.30
2549 3915 4.100498 GTCTTACATTATTGGACGGAGGGA 59.900 45.833 0.00 0.00 0.00 4.20
2551 3917 4.049186 CGTCTTACATTATTGGACGGAGG 58.951 47.826 0.00 0.00 43.69 4.30
2557 3923 7.226918 TGTCACAAAACGTCTTACATTATTGGA 59.773 33.333 0.00 0.00 0.00 3.53
2558 3924 7.322699 GTGTCACAAAACGTCTTACATTATTGG 59.677 37.037 0.00 0.00 0.00 3.16
2559 3925 8.067784 AGTGTCACAAAACGTCTTACATTATTG 58.932 33.333 5.62 0.00 0.00 1.90
2560 3926 8.149973 AGTGTCACAAAACGTCTTACATTATT 57.850 30.769 5.62 0.00 0.00 1.40
2562 3928 8.821147 ATAGTGTCACAAAACGTCTTACATTA 57.179 30.769 5.62 0.00 0.00 1.90
2563 3929 7.724305 ATAGTGTCACAAAACGTCTTACATT 57.276 32.000 5.62 0.00 0.00 2.71
2565 3931 8.821147 AATATAGTGTCACAAAACGTCTTACA 57.179 30.769 5.62 0.00 0.00 2.41
2597 3963 5.074804 GGCCCATAATATAGGACGGTTTTT 58.925 41.667 0.00 0.00 0.00 1.94
2598 3964 4.659115 GGCCCATAATATAGGACGGTTTT 58.341 43.478 0.00 0.00 0.00 2.43
2599 3965 4.296621 GGCCCATAATATAGGACGGTTT 57.703 45.455 0.00 0.00 0.00 3.27
2600 3966 3.994931 GGCCCATAATATAGGACGGTT 57.005 47.619 0.00 0.00 0.00 4.44
2604 3970 3.105283 ACTCCGGCCCATAATATAGGAC 58.895 50.000 0.00 0.00 0.00 3.85
2605 3971 3.104512 CACTCCGGCCCATAATATAGGA 58.895 50.000 0.00 0.00 0.00 2.94
2606 3972 3.104512 TCACTCCGGCCCATAATATAGG 58.895 50.000 0.00 0.00 0.00 2.57
2607 3973 3.769844 ACTCACTCCGGCCCATAATATAG 59.230 47.826 0.00 0.00 0.00 1.31
2608 3974 3.786553 ACTCACTCCGGCCCATAATATA 58.213 45.455 0.00 0.00 0.00 0.86
2609 3975 2.621070 ACTCACTCCGGCCCATAATAT 58.379 47.619 0.00 0.00 0.00 1.28
2610 3976 2.097110 ACTCACTCCGGCCCATAATA 57.903 50.000 0.00 0.00 0.00 0.98
2611 3977 2.097110 TACTCACTCCGGCCCATAAT 57.903 50.000 0.00 0.00 0.00 1.28
2612 3978 2.097110 ATACTCACTCCGGCCCATAA 57.903 50.000 0.00 0.00 0.00 1.90
2613 3979 2.984435 TATACTCACTCCGGCCCATA 57.016 50.000 0.00 0.00 0.00 2.74
2614 3980 1.971357 CTTATACTCACTCCGGCCCAT 59.029 52.381 0.00 0.00 0.00 4.00
2615 3981 1.342674 ACTTATACTCACTCCGGCCCA 60.343 52.381 0.00 0.00 0.00 5.36
2616 3982 1.340568 GACTTATACTCACTCCGGCCC 59.659 57.143 0.00 0.00 0.00 5.80
2617 3983 2.308690 AGACTTATACTCACTCCGGCC 58.691 52.381 0.00 0.00 0.00 6.13
2618 3984 4.388378 AAAGACTTATACTCACTCCGGC 57.612 45.455 0.00 0.00 0.00 6.13
2619 3985 7.701501 GTCTAAAAAGACTTATACTCACTCCGG 59.298 40.741 0.00 0.00 36.01 5.14
2620 3986 8.242053 TGTCTAAAAAGACTTATACTCACTCCG 58.758 37.037 7.04 0.00 39.41 4.63
2650 4016 4.209307 TCCGCATGTTGTAGTCCATTTA 57.791 40.909 0.00 0.00 0.00 1.40
2698 4064 7.537991 CGCTCTTATATTAGTTTACGGAGGAAG 59.462 40.741 0.00 0.00 0.00 3.46
2699 4065 7.013655 ACGCTCTTATATTAGTTTACGGAGGAA 59.986 37.037 0.00 0.00 0.00 3.36
2700 4066 6.488006 ACGCTCTTATATTAGTTTACGGAGGA 59.512 38.462 0.00 0.00 0.00 3.71
2701 4067 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2702 4068 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2703 4069 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2704 4070 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2718 4084 9.654663 AACTATTTTAGTGATCTAAACGCTCTT 57.345 29.630 0.00 0.00 43.20 2.85
2731 4097 9.339850 AGAGCGTCTAGATAACTATTTTAGTGA 57.660 33.333 0.00 0.00 39.39 3.41
2732 4098 9.953697 AAGAGCGTCTAGATAACTATTTTAGTG 57.046 33.333 0.00 0.00 39.39 2.74
2749 4115 8.569641 CCTCTGTAAACTAATATAAGAGCGTCT 58.430 37.037 0.00 0.00 0.00 4.18
2750 4116 7.808856 CCCTCTGTAAACTAATATAAGAGCGTC 59.191 40.741 0.00 0.00 0.00 5.19
2751 4117 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
2752 4118 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
2753 4119 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2760 4126 9.064706 CGAATCTACTCCCTCTGTAAACTAATA 57.935 37.037 0.00 0.00 0.00 0.98
2761 4127 7.470286 GCGAATCTACTCCCTCTGTAAACTAAT 60.470 40.741 0.00 0.00 0.00 1.73
2762 4128 6.183360 GCGAATCTACTCCCTCTGTAAACTAA 60.183 42.308 0.00 0.00 0.00 2.24
2763 4129 5.298777 GCGAATCTACTCCCTCTGTAAACTA 59.701 44.000 0.00 0.00 0.00 2.24
2764 4130 4.098196 GCGAATCTACTCCCTCTGTAAACT 59.902 45.833 0.00 0.00 0.00 2.66
2765 4131 4.098196 AGCGAATCTACTCCCTCTGTAAAC 59.902 45.833 0.00 0.00 0.00 2.01
2766 4132 4.279145 AGCGAATCTACTCCCTCTGTAAA 58.721 43.478 0.00 0.00 0.00 2.01
2767 4133 3.884091 GAGCGAATCTACTCCCTCTGTAA 59.116 47.826 0.00 0.00 0.00 2.41
2768 4134 3.118000 TGAGCGAATCTACTCCCTCTGTA 60.118 47.826 0.00 0.00 31.65 2.74
2769 4135 2.303175 GAGCGAATCTACTCCCTCTGT 58.697 52.381 0.00 0.00 0.00 3.41
2770 4136 2.034053 GTGAGCGAATCTACTCCCTCTG 59.966 54.545 0.00 0.00 31.65 3.35
2771 4137 2.092103 AGTGAGCGAATCTACTCCCTCT 60.092 50.000 0.00 0.00 31.65 3.69
2772 4138 2.303175 AGTGAGCGAATCTACTCCCTC 58.697 52.381 0.00 0.00 31.65 4.30
2773 4139 2.445682 AGTGAGCGAATCTACTCCCT 57.554 50.000 0.00 0.00 31.65 4.20
2774 4140 3.190874 CAAAGTGAGCGAATCTACTCCC 58.809 50.000 0.00 0.00 31.65 4.30
2775 4141 2.605366 GCAAAGTGAGCGAATCTACTCC 59.395 50.000 0.00 0.00 31.65 3.85
2776 4142 3.516615 AGCAAAGTGAGCGAATCTACTC 58.483 45.455 0.00 0.00 37.01 2.59
2777 4143 3.516615 GAGCAAAGTGAGCGAATCTACT 58.483 45.455 0.00 0.00 37.01 2.57
2778 4144 2.605366 GGAGCAAAGTGAGCGAATCTAC 59.395 50.000 0.00 0.00 37.01 2.59
2779 4145 2.735444 CGGAGCAAAGTGAGCGAATCTA 60.735 50.000 0.00 0.00 37.01 1.98
2780 4146 1.731720 GGAGCAAAGTGAGCGAATCT 58.268 50.000 0.00 0.00 37.01 2.40
2791 4157 4.111375 AGTGACTACATACGGAGCAAAG 57.889 45.455 0.00 0.00 0.00 2.77
2802 4168 4.929808 GTCGATTCCAACAAGTGACTACAT 59.070 41.667 0.00 0.00 0.00 2.29
2822 4188 6.369059 TCCTCCGTTTCTAAGTATAAGTCG 57.631 41.667 0.00 0.00 0.00 4.18
2831 4205 3.128242 TCGCTACTTCCTCCGTTTCTAAG 59.872 47.826 0.00 0.00 0.00 2.18
2835 4209 1.910688 CTCGCTACTTCCTCCGTTTC 58.089 55.000 0.00 0.00 0.00 2.78
2845 4219 2.283298 CCATCATGTTGCTCGCTACTT 58.717 47.619 5.21 0.00 0.00 2.24
2851 4225 3.770263 ATTGAACCATCATGTTGCTCG 57.230 42.857 0.00 0.00 34.96 5.03
2860 4263 7.148255 GCTACTGTGAATTGTATTGAACCATCA 60.148 37.037 0.00 0.00 0.00 3.07
2923 4326 3.927481 GACAAGCCCACCCTCAGCC 62.927 68.421 0.00 0.00 0.00 4.85
2950 4353 4.905429 TGGATGAGCTAGCAAAGTAACAA 58.095 39.130 18.83 0.00 0.00 2.83
2959 4362 3.036819 ACAATCTCTGGATGAGCTAGCA 58.963 45.455 18.83 0.00 42.38 3.49
2972 4375 4.342665 GGAGGTAGAATCCGAACAATCTCT 59.657 45.833 0.00 0.00 0.00 3.10
3100 4515 4.613944 TGCAGCAAAAACAATCTGAAGAG 58.386 39.130 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.