AutoCloner

Multiple sequence alignment - TraesCS7B01G174400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G174400	chr7B	100.000	2750	0	0	1	2750	245213061	245210312	0.000000e+00	5079.0
1	TraesCS7B01G174400	chr7B	79.407	641	88	12	1	617	714513109	714512489	1.970000e-111	412.0
2	TraesCS7B01G174400	chr7D	93.175	1392	51	11	702	2066	265005346	265003972	0.000000e+00	2004.0
3	TraesCS7B01G174400	chr7D	92.961	483	23	3	2269	2740	265003766	265003284	0.000000e+00	693.0
4	TraesCS7B01G174400	chr7D	86.697	436	56	2	1824	2257	99028444	99028009	1.480000e-132	483.0
5	TraesCS7B01G174400	chr7D	78.202	445	82	12	1826	2260	186006525	186006964	1.260000e-68	270.0
6	TraesCS7B01G174400	chr7D	77.324	441	92	6	1826	2260	618058607	618059045	1.260000e-63	254.0
7	TraesCS7B01G174400	chr7D	87.143	70	3	5	1255	1322	629783384	629783319	1.060000e-09	75.0
8	TraesCS7B01G174400	chr7A	91.953	1106	40	14	804	1903	289161401	289160339	0.000000e+00	1504.0
9	TraesCS7B01G174400	chr7A	90.432	857	67	10	1887	2740	289159690	289158846	0.000000e+00	1114.0
10	TraesCS7B01G174400	chr7A	82.174	230	27	4	1	217	469998337	469998109	4.680000e-43	185.0
11	TraesCS7B01G174400	chr7A	93.458	107	7	0	668	774	289161801	289161695	2.830000e-35	159.0
12	TraesCS7B01G174400	chr4D	91.680	637	36	2	1	620	170224140	170224776	0.000000e+00	867.0
13	TraesCS7B01G174400	chr4D	81.616	631	97	6	1	613	393619336	393619965	3.160000e-139	505.0
14	TraesCS7B01G174400	chr4B	87.422	644	55	7	1	620	89403409	89404050	0.000000e+00	717.0
15	TraesCS7B01G174400	chr4B	95.238	42	2	0	624	665	595703267	595703226	1.770000e-07	67.6
16	TraesCS7B01G174400	chr4B	93.023	43	3	0	618	660	89404153	89404195	2.290000e-06	63.9
17	TraesCS7B01G174400	chr6B	90.448	513	43	1	111	617	396926570	396927082	0.000000e+00	671.0
18	TraesCS7B01G174400	chr6B	77.978	445	80	12	1825	2259	61286	60850	2.100000e-66	263.0
19	TraesCS7B01G174400	chr2D	90.310	516	44	1	111	620	491376333	491375818	0.000000e+00	671.0
20	TraesCS7B01G174400	chr2D	82.045	440	72	7	1824	2258	559825656	559826093	4.330000e-98	368.0
21	TraesCS7B01G174400	chr6D	86.278	634	57	6	1	617	472903371	472903991	0.000000e+00	662.0
22	TraesCS7B01G174400	chr6D	79.206	428	72	11	1844	2259	306319046	306319468	5.800000e-72	281.0
23	TraesCS7B01G174400	chr6D	95.238	42	2	0	619	660	453486391	453486432	1.770000e-07	67.6
24	TraesCS7B01G174400	chr6D	97.297	37	1	0	624	660	166760941	166760977	2.290000e-06	63.9
25	TraesCS7B01G174400	chr6A	82.835	635	88	5	2	617	155901830	155902462	1.440000e-152	549.0
26	TraesCS7B01G174400	chr5B	80.915	634	101	4	1	617	133857880	133858510	1.480000e-132	483.0
27	TraesCS7B01G174400	chr5B	91.509	106	9	0	1209	1314	542295575	542295470	2.210000e-31	147.0
28	TraesCS7B01G174400	chr5B	86.923	130	14	3	1209	1338	542320025	542319899	2.850000e-30	143.0
29	TraesCS7B01G174400	chr5B	91.209	91	8	0	1216	1306	531187525	531187615	1.030000e-24	124.0
30	TraesCS7B01G174400	chr5B	89.773	88	9	0	1216	1303	531274891	531274978	2.240000e-21	113.0
31	TraesCS7B01G174400	chr5B	91.667	48	4	0	618	665	133858663	133858710	1.770000e-07	67.6
32	TraesCS7B01G174400	chr2B	81.996	511	79	8	111	613	569124753	569124248	3.270000e-114	422.0
33	TraesCS7B01G174400	chr1B	88.079	302	36	0	319	620	174197758	174197457	2.600000e-95	359.0
34	TraesCS7B01G174400	chr1A	93.421	228	15	0	393	620	4363291	4363064	3.390000e-89	339.0
35	TraesCS7B01G174400	chr4A	78.523	447	73	17	1825	2257	547520095	547519658	3.490000e-69	272.0
36	TraesCS7B01G174400	chrUn	78.005	441	81	14	1825	2257	324145481	324145049	2.100000e-66	263.0
37	TraesCS7B01G174400	chrUn	100.000	34	0	0	1247	1280	34499421	34499388	2.290000e-06	63.9
38	TraesCS7B01G174400	chr3D	77.367	433	87	7	170	593	554164290	554163860	2.120000e-61	246.0
39	TraesCS7B01G174400	chr3D	84.375	128	15	4	1188	1312	592761210	592761335	1.340000e-23	121.0
40	TraesCS7B01G174400	chr3D	86.301	73	9	1	1223	1294	16887989	16888061	8.170000e-11	78.7
41	TraesCS7B01G174400	chr3D	100.000	34	0	0	1247	1280	2537434	2537401	2.290000e-06	63.9
42	TraesCS7B01G174400	chr5D	89.431	123	12	1	1209	1331	445055995	445055874	1.320000e-33	154.0
43	TraesCS7B01G174400	chr5D	91.509	106	9	0	1209	1314	445062755	445062650	2.210000e-31	147.0
44	TraesCS7B01G174400	chr5D	91.209	91	8	0	1216	1306	436971851	436971941	1.030000e-24	124.0
45	TraesCS7B01G174400	chr5D	95.238	42	2	0	619	660	337721922	337721963	1.770000e-07	67.6
46	TraesCS7B01G174400	chr5A	90.385	104	10	0	1211	1314	562100869	562100766	1.330000e-28	137.0
47	TraesCS7B01G174400	chr5A	92.308	91	7	0	1216	1306	552232949	552233039	2.220000e-26	130.0
48	TraesCS7B01G174400	chr3B	81.529	157	25	4	2578	2734	737342202	737342050	2.870000e-25	126.0
49	TraesCS7B01G174400	chr3B	85.156	128	14	4	1188	1312	794396453	794396328	2.870000e-25	126.0
50	TraesCS7B01G174400	chr1D	95.238	42	2	0	624	665	85505687	85505728	1.770000e-07	67.6
51	TraesCS7B01G174400	chr1D	95.238	42	2	0	624	665	182700158	182700117	1.770000e-07	67.6
52	TraesCS7B01G174400	chr2A	91.489	47	4	0	624	670	290197535	290197489	6.360000e-07	65.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G174400	chr7B	245210312	245213061	2749	True	5079.000000	5079	100.000000	1	2750	1	chr7B.!!$R1	2749
1	TraesCS7B01G174400	chr7B	714512489	714513109	620	True	412.000000	412	79.407000	1	617	1	chr7B.!!$R2	616
2	TraesCS7B01G174400	chr7D	265003284	265005346	2062	True	1348.500000	2004	93.068000	702	2740	2	chr7D.!!$R3	2038
3	TraesCS7B01G174400	chr7A	289158846	289161801	2955	True	925.666667	1504	91.947667	668	2740	3	chr7A.!!$R2	2072
4	TraesCS7B01G174400	chr4D	170224140	170224776	636	False	867.000000	867	91.680000	1	620	1	chr4D.!!$F1	619
5	TraesCS7B01G174400	chr4D	393619336	393619965	629	False	505.000000	505	81.616000	1	613	1	chr4D.!!$F2	612
6	TraesCS7B01G174400	chr4B	89403409	89404195	786	False	390.450000	717	90.222500	1	660	2	chr4B.!!$F1	659
7	TraesCS7B01G174400	chr6B	396926570	396927082	512	False	671.000000	671	90.448000	111	617	1	chr6B.!!$F1	506
8	TraesCS7B01G174400	chr2D	491375818	491376333	515	True	671.000000	671	90.310000	111	620	1	chr2D.!!$R1	509
9	TraesCS7B01G174400	chr6D	472903371	472903991	620	False	662.000000	662	86.278000	1	617	1	chr6D.!!$F4	616
10	TraesCS7B01G174400	chr6A	155901830	155902462	632	False	549.000000	549	82.835000	2	617	1	chr6A.!!$F1	615
11	TraesCS7B01G174400	chr5B	133857880	133858710	830	False	275.300000	483	86.291000	1	665	2	chr5B.!!$F3	664
12	TraesCS7B01G174400	chr2B	569124248	569124753	505	True	422.000000	422	81.996000	111	613	1	chr2B.!!$R1	502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
317	349	0.382515	GACCTCTTCGTGGAGATCCG	59.617	60.0	8.49	0.0	39.43	4.18	F
1067	1520	0.039617	CCGATCAGTCTCTCCATCGC	60.040	60.0	0.00	0.0	37.42	4.58	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1488	1956	1.056750	GTGCACGCGATGAACGTAC	59.943	57.895	15.93	0.0	42.96	3.67	R
2592	3835	0.325933	TCAGGCATGAAGTGTCAGGG	59.674	55.000	0.00	0.0	37.14	4.45	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
26	27	1.298667	GGGCCGCTTCTCCACTAAA	59.701	57.895	0.00	0.00	0.00	1.85
66	67	3.214123	CGTCGACGGCCCCAGATA	61.214	66.667	29.70	0.00	35.37	1.98
94	102	2.790433	GGTTGTCTAGGCCATCAAACA	58.210	47.619	5.01	0.00	0.00	2.83
217	236	1.080705	GTGGAGGACTCGAACCACG	60.081	63.158	10.29	0.00	42.20	4.94
237	256	1.663643	GTCTTCTTTGCGTGTGTCACA	59.336	47.619	0.18	0.18	33.40	3.58
317	349	0.382515	GACCTCTTCGTGGAGATCCG	59.617	60.000	8.49	0.00	39.43	4.18
438	470	1.738350	CCTCTTCGACGCTCTACTGAA	59.262	52.381	0.00	0.00	0.00	3.02
444	476	2.292569	TCGACGCTCTACTGAAGTTGTT	59.707	45.455	0.00	0.00	0.00	2.83
542	574	3.518998	CGACCTCCGCTCGATGGT	61.519	66.667	3.99	6.03	32.65	3.55
607	639	0.918983	TTAGCCTGCTATGGTTGCCT	59.081	50.000	0.00	0.00	0.00	4.75
622	654	3.625897	CCTCACCCGGTGCTGACA	61.626	66.667	13.19	0.00	32.98	3.58
651	837	6.345920	CTTTATATATAAAGCGGGGCGAAG	57.654	41.667	25.10	5.90	41.69	3.79
781	981	8.242085	TCACAAGCATGCTAAATTTTGTATTG	57.758	30.769	23.00	13.12	0.00	1.90
927	1380	2.565394	CGTCGTCGCATTCGCCTAC	61.565	63.158	0.00	0.00	35.26	3.18
1048	1501	0.947244	AGCAGCGCTATACATTTGCC	59.053	50.000	10.99	0.00	36.99	4.52
1064	1517	0.397675	TGCCCGATCAGTCTCTCCAT	60.398	55.000	0.00	0.00	0.00	3.41
1065	1518	0.316841	GCCCGATCAGTCTCTCCATC	59.683	60.000	0.00	0.00	0.00	3.51
1066	1519	0.595588	CCCGATCAGTCTCTCCATCG	59.404	60.000	0.00	0.00	38.28	3.84
1067	1520	0.039617	CCGATCAGTCTCTCCATCGC	60.040	60.000	0.00	0.00	37.42	4.58
1068	1521	0.665298	CGATCAGTCTCTCCATCGCA	59.335	55.000	0.00	0.00	32.44	5.10
1069	1522	1.334870	CGATCAGTCTCTCCATCGCAG	60.335	57.143	0.00	0.00	32.44	5.18
1135	1594	2.338984	GCGACGTGAACCTGGACT	59.661	61.111	0.00	0.00	0.00	3.85
1426	1885	0.249657	CGGAGATAGTGGCCAAGCTC	60.250	60.000	7.24	11.12	0.00	4.09
1436	1904	4.785453	CCAAGCTCCAGGGTCGGC	62.785	72.222	0.00	0.00	0.00	5.54
1437	1905	4.785453	CAAGCTCCAGGGTCGGCC	62.785	72.222	0.00	0.00	0.00	6.13
1792	2271	9.166173	ACGTACGTACATATAGAATTAGCCATA	57.834	33.333	21.41	0.00	0.00	2.74
1821	2300	8.195165	TCATATAGTAACCAAATCAGCTAGCT	57.805	34.615	12.68	12.68	0.00	3.32
1824	2303	9.930693	ATATAGTAACCAAATCAGCTAGCTTAC	57.069	33.333	16.46	12.35	0.00	2.34
1834	2313	5.006153	TCAGCTAGCTTACGATGCTTTTA	57.994	39.130	16.46	0.00	41.46	1.52
1846	2325	3.481467	CGATGCTTTTACGTCGTTTCCTC	60.481	47.826	1.78	0.00	42.68	3.71
1849	2328	2.409371	GCTTTTACGTCGTTTCCTCGTG	60.409	50.000	1.78	0.00	38.27	4.35
1863	2342	1.699656	CTCGTGGAAGGCATTGCTCG	61.700	60.000	18.68	18.68	42.70	5.03
1879	2358	0.933097	CTCGGATTTGCTCGGACATG	59.067	55.000	0.00	0.00	0.00	3.21
1903	3047	8.924511	TGTTCTTCAAGATGAAAACCTAGAAT	57.075	30.769	0.00	0.00	35.73	2.40
1926	3070	3.541242	AATCTTTGGTGGTTGGATCCA	57.459	42.857	11.44	11.44	34.85	3.41
1936	3080	2.841266	TGGTTGGATCCAATAACGGAGA	59.159	45.455	29.37	1.19	38.83	3.71
1966	3110	3.675775	GCGCCATTTTCTTTATGAAGGCA	60.676	43.478	0.00	0.00	41.10	4.75
1969	3113	6.272318	CGCCATTTTCTTTATGAAGGCATTA	58.728	36.000	0.00	0.00	41.10	1.90
1972	3116	9.762933	GCCATTTTCTTTATGAAGGCATTATTA	57.237	29.630	0.00	0.00	40.88	0.98
2010	3154	2.972021	TCCTTGTGGTGTCAAGAGATGA	59.028	45.455	7.83	0.00	45.11	2.92
2019	3163	2.289631	TGTCAAGAGATGATTGGTGCGT	60.290	45.455	0.00	0.00	40.97	5.24
2066	3218	2.416547	CGATGTTGATCGCTTCAAGGTT	59.583	45.455	1.44	0.00	44.89	3.50
2135	3336	5.899120	TGCTATTTGCCGGTGTTTTTATA	57.101	34.783	1.90	0.00	42.00	0.98
2136	3337	6.458232	TGCTATTTGCCGGTGTTTTTATAT	57.542	33.333	1.90	0.00	42.00	0.86
2164	3365	3.894427	TGTTGGAATTGGCTGTGTACATT	59.106	39.130	0.00	0.00	0.00	2.71
2171	3372	6.017605	GGAATTGGCTGTGTACATTCTAGATG	60.018	42.308	0.00	0.00	0.00	2.90
2189	3390	2.024319	GTGCAGAGACCGAGTGTGC	61.024	63.158	0.00	0.00	34.62	4.57
2190	3391	2.807045	GCAGAGACCGAGTGTGCG	60.807	66.667	0.00	0.00	0.00	5.34
2191	3392	2.645567	CAGAGACCGAGTGTGCGT	59.354	61.111	0.00	0.00	0.00	5.24
2193	3394	0.597637	CAGAGACCGAGTGTGCGTTT	60.598	55.000	0.00	0.00	0.00	3.60
2224	3462	9.399797	TGTCTGTATCATCTTTATGCTTCATTT	57.600	29.630	0.00	0.00	32.76	2.32
2225	3463	9.875675	GTCTGTATCATCTTTATGCTTCATTTC	57.124	33.333	0.00	0.00	32.76	2.17
2226	3464	8.768019	TCTGTATCATCTTTATGCTTCATTTCG	58.232	33.333	0.00	0.00	32.76	3.46
2227	3465	8.661352	TGTATCATCTTTATGCTTCATTTCGA	57.339	30.769	0.00	0.00	32.76	3.71
2228	3466	8.768019	TGTATCATCTTTATGCTTCATTTCGAG	58.232	33.333	0.00	0.00	32.76	4.04
2229	3467	7.798596	ATCATCTTTATGCTTCATTTCGAGT	57.201	32.000	0.00	0.00	32.76	4.18
2230	3468	7.615582	TCATCTTTATGCTTCATTTCGAGTT	57.384	32.000	0.00	0.00	32.76	3.01
2231	3469	8.716646	TCATCTTTATGCTTCATTTCGAGTTA	57.283	30.769	0.00	0.00	32.76	2.24
2232	3470	9.161629	TCATCTTTATGCTTCATTTCGAGTTAA	57.838	29.630	0.00	0.00	32.76	2.01
2233	3471	9.941664	CATCTTTATGCTTCATTTCGAGTTAAT	57.058	29.630	0.00	0.00	0.00	1.40
2250	3488	9.813446	TCGAGTTAATAAAATCTACCCTTTCTC	57.187	33.333	0.00	0.00	0.00	2.87
2251	3489	9.595823	CGAGTTAATAAAATCTACCCTTTCTCA	57.404	33.333	0.00	0.00	0.00	3.27
2336	3574	9.378551	TGAAATTTTATCAGACACGCTAGTATT	57.621	29.630	0.00	0.00	0.00	1.89
2465	3706	2.265739	CAAGTCCTGCGGCAGCTA	59.734	61.111	24.27	11.57	45.42	3.32
2511	3752	1.276138	ACATTCGATCACAGCCACTGA	59.724	47.619	0.78	0.00	35.18	3.41
2566	3809	3.210232	TGGATGAGTAGTACTCCCTCG	57.790	52.381	24.32	0.00	44.44	4.63
2572	3815	3.009916	TGAGTAGTACTCCCTCGTTTCCT	59.990	47.826	24.32	0.00	44.44	3.36
2592	3835	2.731976	CTGTTTCGGAACTACTCTGTGC	59.268	50.000	8.32	0.00	36.70	4.57
2655	3899	0.179100	GGCTATGCGAGACTTGCTCA	60.179	55.000	15.76	2.83	44.15	4.26
2662	3906	2.289382	TGCGAGACTTGCTCATAACCAA	60.289	45.455	15.76	0.00	44.15	3.67
2723	3975	2.846039	AGTGTCGTCCGTATAGCAAG	57.154	50.000	0.00	0.00	0.00	4.01
2740	3992	9.067986	GTATAGCAAGGCTCTTTTGGTTTATAT	57.932	33.333	0.00	0.00	40.44	0.86
2742	3994	9.813826	ATAGCAAGGCTCTTTTGGTTTATATAT	57.186	29.630	0.00	0.00	40.44	0.86
2744	3996	9.289782	AGCAAGGCTCTTTTGGTTTATATATAG	57.710	33.333	0.00	0.00	30.62	1.31
2745	3997	8.515414	GCAAGGCTCTTTTGGTTTATATATAGG	58.485	37.037	0.00	0.00	0.00	2.57
2746	3998	9.014297	CAAGGCTCTTTTGGTTTATATATAGGG	57.986	37.037	0.00	0.00	0.00	3.53
2747	3999	8.289182	AGGCTCTTTTGGTTTATATATAGGGT	57.711	34.615	0.00	0.00	0.00	4.34
2748	4000	8.733808	AGGCTCTTTTGGTTTATATATAGGGTT	58.266	33.333	0.00	0.00	0.00	4.11
2749	4001	9.011095	GGCTCTTTTGGTTTATATATAGGGTTC	57.989	37.037	0.00	0.00	0.00	3.62

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
26	27	1.279271	GCGATGGCCTGGTATAAGGAT	59.721	52.381	3.32	0.00	40.02	3.24
66	67	1.755380	GGCCTAGACAACCGTGATAGT	59.245	52.381	0.00	0.00	0.00	2.12
94	102	1.203441	TGCCCTGATCTTGAGTGGCT	61.203	55.000	0.00	0.00	39.60	4.75
217	236	1.663643	TGTGACACACGCAAAGAAGAC	59.336	47.619	3.56	0.00	37.14	3.01
237	256	1.269958	GGAAGCAAAGGAATTGGGCT	58.730	50.000	0.00	0.00	39.54	5.19
362	394	0.171455	GAGAGTCCACACTAGCACCG	59.829	60.000	0.00	0.00	30.63	4.94
438	470	7.880713	AGGAAACCACACATTTTAAAAACAACT	59.119	29.630	4.44	0.00	0.00	3.16
444	476	5.734720	TGCAGGAAACCACACATTTTAAAA	58.265	33.333	2.51	2.51	0.00	1.52
497	529	1.210155	GTGTTGATGGCGTCTTGGC	59.790	57.895	8.40	0.00	45.12	4.52
500	532	1.271325	TGATGGTGTTGATGGCGTCTT	60.271	47.619	8.40	0.00	0.00	3.01
542	574	4.329545	GTGGGGCCAGACGAAGCA	62.330	66.667	4.39	0.00	0.00	3.91
661	847	1.553248	CGAAACCTCCACCCTGATACA	59.447	52.381	0.00	0.00	0.00	2.29
665	851	2.747686	GCGAAACCTCCACCCTGA	59.252	61.111	0.00	0.00	0.00	3.86
666	852	2.359975	GGCGAAACCTCCACCCTG	60.360	66.667	0.00	0.00	34.51	4.45
728	917	2.892425	CGATGGCAACGGCTCTCC	60.892	66.667	9.50	0.00	40.87	3.71
781	981	4.635833	TTTACCCAAGTTTCGAACCAAC	57.364	40.909	0.00	0.00	0.00	3.77
927	1380	1.765314	ACTGCACATAGGCTCCTTAGG	59.235	52.381	0.00	0.00	34.04	2.69
1048	1501	0.039617	GCGATGGAGAGACTGATCGG	60.040	60.000	0.00	0.00	38.48	4.18
1135	1594	3.758973	TTGGGTGAACGAGCCGCAA	62.759	57.895	0.00	0.00	46.29	4.85
1197	1656	3.069318	GAGAAGGTCCGGTCGGCT	61.069	66.667	0.00	0.00	34.68	5.52
1335	1794	4.637489	CTGGAGGAGGCGATCGCG	62.637	72.222	31.76	13.13	43.06	5.87
1488	1956	1.056750	GTGCACGCGATGAACGTAC	59.943	57.895	15.93	0.00	42.96	3.67
1581	2049	1.306148	TCTAGTCCACTCCATACGCG	58.694	55.000	3.53	3.53	0.00	6.01
1798	2277	9.930693	GTAAGCTAGCTGATTTGGTTACTATAT	57.069	33.333	20.16	0.00	39.10	0.86
1799	2278	8.080417	CGTAAGCTAGCTGATTTGGTTACTATA	58.920	37.037	20.16	0.00	39.64	1.31
1821	2300	4.143347	GGAAACGACGTAAAAGCATCGTAA	60.143	41.667	0.00	0.00	46.46	3.18
1824	2303	2.410730	AGGAAACGACGTAAAAGCATCG	59.589	45.455	0.00	0.00	40.39	3.84
1834	2313	3.435590	TCCACGAGGAAACGACGT	58.564	55.556	0.00	0.00	42.23	4.34
1842	2321	1.377202	GCAATGCCTTCCACGAGGA	60.377	57.895	0.00	0.00	43.93	3.71
1846	2325	2.753966	CCGAGCAATGCCTTCCACG	61.754	63.158	0.00	0.00	0.00	4.94
1849	2328	1.106285	AAATCCGAGCAATGCCTTCC	58.894	50.000	0.00	0.00	0.00	3.46
1863	2342	2.359900	AGAACATGTCCGAGCAAATCC	58.640	47.619	0.00	0.00	0.00	3.01
1903	3047	5.398236	TGGATCCAACCACCAAAGATTAAA	58.602	37.500	13.46	0.00	34.77	1.52
1906	3050	3.541242	TGGATCCAACCACCAAAGATT	57.459	42.857	13.46	0.00	34.77	2.40
1926	3070	1.641577	GCTCAAGCGTCTCCGTTATT	58.358	50.000	0.00	0.00	36.15	1.40
1966	3110	7.548075	AGGACAACGACGTTCTTCAATAATAAT	59.452	33.333	10.95	0.00	0.00	1.28
1969	3113	5.235516	AGGACAACGACGTTCTTCAATAAT	58.764	37.500	10.95	0.00	0.00	1.28
1972	3116	3.107642	AGGACAACGACGTTCTTCAAT	57.892	42.857	10.95	0.78	0.00	2.57
2010	3154	9.953565	ACTAATATAAACCATATACGCACCAAT	57.046	29.630	0.00	0.00	0.00	3.16
2135	3336	4.082081	CACAGCCAATTCCAACACATGTAT	60.082	41.667	0.00	0.00	0.00	2.29
2136	3337	3.255395	CACAGCCAATTCCAACACATGTA	59.745	43.478	0.00	0.00	0.00	2.29
2164	3365	2.293170	CTCGGTCTCTGCACATCTAGA	58.707	52.381	0.00	0.00	0.00	2.43
2171	3372	2.024319	GCACACTCGGTCTCTGCAC	61.024	63.158	0.00	0.00	0.00	4.57
2224	3462	9.813446	GAGAAAGGGTAGATTTTATTAACTCGA	57.187	33.333	0.00	0.00	0.00	4.04
2225	3463	9.595823	TGAGAAAGGGTAGATTTTATTAACTCG	57.404	33.333	0.00	0.00	0.00	4.18
2254	3492	7.895759	TCAGCTAGCTGATTTGGTTAATTTTT	58.104	30.769	37.64	0.00	46.80	1.94
2255	3493	7.466746	TCAGCTAGCTGATTTGGTTAATTTT	57.533	32.000	37.64	0.00	46.80	1.82
2336	3574	1.210478	GAAAGGAGGGAGTAGCATGCA	59.790	52.381	21.98	2.77	0.00	3.96
2458	3699	1.401670	CGTACATCGATCCTAGCTGCC	60.402	57.143	0.00	0.00	42.86	4.85
2462	3703	5.122869	TGGTATTACGTACATCGATCCTAGC	59.877	44.000	0.00	0.00	42.86	3.42
2465	3706	5.068636	AGTGGTATTACGTACATCGATCCT	58.931	41.667	0.00	0.00	42.86	3.24
2511	3752	7.120579	TGTCCGATTTAAGCATGACAGTAAATT	59.879	33.333	0.00	0.00	0.00	1.82
2572	3815	2.547218	GGCACAGAGTAGTTCCGAAACA	60.547	50.000	0.00	0.00	37.88	2.83
2592	3835	0.325933	TCAGGCATGAAGTGTCAGGG	59.674	55.000	0.00	0.00	37.14	4.45
2662	3906	1.228063	CTATGCATCCGGCCAAGCT	60.228	57.895	0.19	0.00	43.89	3.74
2723	3975	8.935614	AACCCTATATATAAACCAAAAGAGCC	57.064	34.615	0.00	0.00	0.00	4.70

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.