Multiple sequence alignment - TraesCS7B01G174300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G174300 chr7B 100.000 6044 0 0 1664 7707 245172748 245178791 0.000000e+00 11162.0
1 TraesCS7B01G174300 chr7B 100.000 1187 0 0 1 1187 245171085 245172271 0.000000e+00 2193.0
2 TraesCS7B01G174300 chr7A 95.084 2563 71 17 5158 7707 289129218 289131738 0.000000e+00 3984.0
3 TraesCS7B01G174300 chr7A 95.987 2093 73 8 1675 3764 289119019 289121103 0.000000e+00 3389.0
4 TraesCS7B01G174300 chr7A 96.113 746 20 6 4228 4973 289128490 289129226 0.000000e+00 1208.0
5 TraesCS7B01G174300 chr7A 85.517 870 106 15 1 857 289037456 289038318 0.000000e+00 891.0
6 TraesCS7B01G174300 chr7A 94.253 435 12 5 3809 4231 289121105 289121538 0.000000e+00 652.0
7 TraesCS7B01G174300 chr7A 94.928 276 5 2 921 1187 289118702 289118977 2.570000e-114 424.0
8 TraesCS7B01G174300 chr7A 99.468 188 1 0 4969 5156 78725953 78725766 7.410000e-90 342.0
9 TraesCS7B01G174300 chr7D 96.234 2151 54 11 5156 7298 264974241 264976372 0.000000e+00 3498.0
10 TraesCS7B01G174300 chr7D 96.367 2092 72 4 1675 3764 264970999 264973088 0.000000e+00 3439.0
11 TraesCS7B01G174300 chr7D 95.004 1181 24 14 3809 4973 264973090 264974251 0.000000e+00 1821.0
12 TraesCS7B01G174300 chr7D 86.779 832 87 16 1 815 264953249 264954074 0.000000e+00 905.0
13 TraesCS7B01G174300 chr7D 92.978 413 16 6 7297 7707 264976533 264976934 2.400000e-164 590.0
14 TraesCS7B01G174300 chr7D 95.468 331 13 1 857 1187 264970625 264970953 1.900000e-145 527.0
15 TraesCS7B01G174300 chr5D 83.781 857 118 14 1 839 210377795 210376942 0.000000e+00 793.0
16 TraesCS7B01G174300 chr5D 89.640 222 20 3 6018 6237 360541861 360542081 5.890000e-71 279.0
17 TraesCS7B01G174300 chr5D 80.909 330 55 7 513 839 510630019 510630343 3.570000e-63 254.0
18 TraesCS7B01G174300 chr5A 82.568 849 127 15 2 839 495341827 495342665 0.000000e+00 728.0
19 TraesCS7B01G174300 chr5A 83.117 308 38 9 1 295 272139642 272139336 1.270000e-67 268.0
20 TraesCS7B01G174300 chr5B 82.617 535 85 7 307 839 223986884 223986356 4.210000e-127 466.0
21 TraesCS7B01G174300 chr5B 99.465 187 1 0 4974 5160 372109030 372108844 2.660000e-89 340.0
22 TraesCS7B01G174300 chr5B 90.625 224 18 2 6021 6242 192866767 192866545 2.100000e-75 294.0
23 TraesCS7B01G174300 chr5B 76.522 115 24 2 443 557 278828169 278828280 8.350000e-05 60.2
24 TraesCS7B01G174300 chr2A 100.000 187 0 0 4969 5155 47763568 47763754 5.730000e-91 346.0
25 TraesCS7B01G174300 chr2A 100.000 186 0 0 4970 5155 185123143 185123328 2.060000e-90 344.0
26 TraesCS7B01G174300 chr2A 74.658 730 137 32 127 837 20563469 20562769 5.890000e-71 279.0
27 TraesCS7B01G174300 chr4B 99.471 189 1 0 4967 5155 291852213 291852401 2.060000e-90 344.0
28 TraesCS7B01G174300 chr4A 100.000 186 0 0 4970 5155 245258106 245257921 2.060000e-90 344.0
29 TraesCS7B01G174300 chr4A 98.942 189 2 0 4969 5157 59383679 59383867 9.580000e-89 339.0
30 TraesCS7B01G174300 chr3B 98.964 193 1 1 4970 5161 780293884 780293692 2.060000e-90 344.0
31 TraesCS7B01G174300 chr3B 89.732 224 18 4 6018 6240 250805478 250805259 1.640000e-71 281.0
32 TraesCS7B01G174300 chr6B 99.468 188 1 0 4970 5157 560191512 560191699 7.410000e-90 342.0
33 TraesCS7B01G174300 chr6B 93.333 60 1 3 3765 3821 327059179 327059120 1.380000e-12 86.1
34 TraesCS7B01G174300 chr1D 74.611 835 176 25 24 839 22137058 22137875 1.240000e-87 335.0
35 TraesCS7B01G174300 chr1D 91.518 224 18 1 6018 6240 268963493 268963270 2.700000e-79 307.0
36 TraesCS7B01G174300 chr6D 90.498 221 20 1 6018 6237 365846886 365847106 2.720000e-74 291.0
37 TraesCS7B01G174300 chr6D 71.632 772 153 49 36 780 7461862 7462594 1.340000e-32 152.0
38 TraesCS7B01G174300 chr3A 89.732 224 20 3 6018 6240 210248984 210248763 4.550000e-72 283.0
39 TraesCS7B01G174300 chr2D 90.367 218 18 3 6018 6234 388833667 388833882 4.550000e-72 283.0
40 TraesCS7B01G174300 chr1A 74.328 744 153 32 22 744 23290795 23291521 1.640000e-71 281.0
41 TraesCS7B01G174300 chr1A 94.545 55 1 2 3765 3818 183463448 183463395 4.960000e-12 84.2
42 TraesCS7B01G174300 chr1A 94.545 55 1 2 3765 3818 202054691 202054638 4.960000e-12 84.2
43 TraesCS7B01G174300 chr1A 94.545 55 1 2 3765 3818 214248039 214247986 4.960000e-12 84.2
44 TraesCS7B01G174300 chr6A 72.393 326 82 7 273 594 537663475 537663154 6.370000e-16 97.1
45 TraesCS7B01G174300 chr6A 94.545 55 1 2 3765 3818 283405706 283405759 4.960000e-12 84.2
46 TraesCS7B01G174300 chr6A 94.545 55 1 2 3765 3818 288223416 288223469 4.960000e-12 84.2
47 TraesCS7B01G174300 chr6A 94.545 55 1 2 3765 3818 293857466 293857519 4.960000e-12 84.2
48 TraesCS7B01G174300 chrUn 93.220 59 1 3 3765 3820 206664311 206664253 4.960000e-12 84.2
49 TraesCS7B01G174300 chrUn 89.394 66 4 3 3765 3829 168906392 168906329 6.410000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G174300 chr7B 245171085 245178791 7706 False 6677.500000 11162 100.0000 1 7707 2 chr7B.!!$F1 7706
1 TraesCS7B01G174300 chr7A 289128490 289131738 3248 False 2596.000000 3984 95.5985 4228 7707 2 chr7A.!!$F3 3479
2 TraesCS7B01G174300 chr7A 289118702 289121538 2836 False 1488.333333 3389 95.0560 921 4231 3 chr7A.!!$F2 3310
3 TraesCS7B01G174300 chr7A 289037456 289038318 862 False 891.000000 891 85.5170 1 857 1 chr7A.!!$F1 856
4 TraesCS7B01G174300 chr7D 264970625 264976934 6309 False 1975.000000 3498 95.2102 857 7707 5 chr7D.!!$F2 6850
5 TraesCS7B01G174300 chr7D 264953249 264954074 825 False 905.000000 905 86.7790 1 815 1 chr7D.!!$F1 814
6 TraesCS7B01G174300 chr5D 210376942 210377795 853 True 793.000000 793 83.7810 1 839 1 chr5D.!!$R1 838
7 TraesCS7B01G174300 chr5A 495341827 495342665 838 False 728.000000 728 82.5680 2 839 1 chr5A.!!$F1 837
8 TraesCS7B01G174300 chr5B 223986356 223986884 528 True 466.000000 466 82.6170 307 839 1 chr5B.!!$R2 532
9 TraesCS7B01G174300 chr2A 20562769 20563469 700 True 279.000000 279 74.6580 127 837 1 chr2A.!!$R1 710
10 TraesCS7B01G174300 chr1D 22137058 22137875 817 False 335.000000 335 74.6110 24 839 1 chr1D.!!$F1 815
11 TraesCS7B01G174300 chr1A 23290795 23291521 726 False 281.000000 281 74.3280 22 744 1 chr1A.!!$F1 722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 210 0.401738 CTCAGGGGCTGGTTTTCTCA 59.598 55.0 0.00 0.00 31.51 3.27 F
394 428 0.602562 GCGCTCTCTATCTCTGGCAT 59.397 55.0 0.00 0.00 0.00 4.40 F
825 870 0.896923 TGGCCGTATACTTGTTCGGT 59.103 50.0 0.00 0.00 44.07 4.69 F
2253 2316 0.535797 CGTTCCCCTCTTACCACTCC 59.464 60.0 0.00 0.00 0.00 3.85 F
2508 2571 2.229784 GAGAACCTTGCTCCACATTTGG 59.770 50.0 0.00 0.00 45.56 3.28 F
3156 3220 0.039035 TTTGTATGCGGCCTTTCCCT 59.961 50.0 0.00 0.00 0.00 4.20 F
5061 5143 0.168348 TCAGCTTAGTGTCGACTCGC 59.832 55.0 17.92 11.93 33.21 5.03 F
5094 5176 0.038159 GACTAGTCACAACGCAGGCT 60.038 55.0 18.20 0.00 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 1759 0.755698 CCGCTCCTTAGCCTAGGTCA 60.756 60.000 11.31 0.00 46.68 4.02 R
1942 2003 1.292223 CACCTCGTCGACCCAATGT 59.708 57.895 10.58 0.00 0.00 2.71 R
2476 2539 1.534595 CAAGGTTCTCTCTGCACAAGC 59.465 52.381 0.00 0.00 42.57 4.01 R
3146 3210 0.533951 CAGAAATGCAGGGAAAGGCC 59.466 55.000 0.00 0.00 0.00 5.19 R
4415 4497 0.519519 TTGCGTTTACTCGGCATTGG 59.480 50.000 0.00 0.00 0.00 3.16 R
5075 5157 0.038159 AGCCTGCGTTGTGACTAGTC 60.038 55.000 16.32 16.32 0.00 2.59 R
6662 6755 1.201429 TCCAGGTCCAGCTTTCCCTC 61.201 60.000 0.00 0.00 0.00 4.30 R
6998 7091 7.622256 GCAGTAAATACACACTCACAAGATGAC 60.622 40.741 0.00 0.00 32.37 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 88 4.730487 GCTGTGGGCTCAGTGATT 57.270 55.556 0.00 0.00 37.70 2.57
200 210 0.401738 CTCAGGGGCTGGTTTTCTCA 59.598 55.000 0.00 0.00 31.51 3.27
226 236 1.589716 GGTCCATGCACTGTGAAGCC 61.590 60.000 12.86 0.00 0.00 4.35
248 258 1.421410 CGGTTGGCTATGTCTCGTGC 61.421 60.000 0.00 0.00 0.00 5.34
252 262 1.480789 TGGCTATGTCTCGTGCCTTA 58.519 50.000 0.00 0.00 45.11 2.69
257 267 3.254657 GCTATGTCTCGTGCCTTAGATCT 59.745 47.826 0.00 0.00 0.00 2.75
296 314 1.133181 TCCACATGGTTGGCTCTCCA 61.133 55.000 0.00 0.00 41.55 3.86
394 428 0.602562 GCGCTCTCTATCTCTGGCAT 59.397 55.000 0.00 0.00 0.00 4.40
425 461 1.680338 CGATCCAGATTTGGGGTTCC 58.320 55.000 1.81 0.00 45.10 3.62
551 595 4.617067 GCTCTCTTCTTGAAGATGTCGTCA 60.617 45.833 12.72 0.00 32.73 4.35
565 609 2.227194 GTCGTCATGGTGTTTCCCTTT 58.773 47.619 0.00 0.00 34.77 3.11
719 763 6.696411 ACTCAGTTCCTCTTGTCTTATCTTG 58.304 40.000 0.00 0.00 0.00 3.02
789 834 4.021368 TCGGCTTTGTAAGAGAGCTACTTT 60.021 41.667 10.23 0.00 36.66 2.66
795 840 8.293157 GCTTTGTAAGAGAGCTACTTTTTCATT 58.707 33.333 10.23 0.00 33.72 2.57
798 843 9.950680 TTGTAAGAGAGCTACTTTTTCATTTTG 57.049 29.630 10.23 0.00 0.00 2.44
799 844 9.120538 TGTAAGAGAGCTACTTTTTCATTTTGT 57.879 29.630 10.23 0.00 0.00 2.83
804 849 8.748380 AGAGCTACTTTTTCATTTTGTATTGC 57.252 30.769 0.00 0.00 0.00 3.56
805 850 8.579863 AGAGCTACTTTTTCATTTTGTATTGCT 58.420 29.630 0.00 0.00 0.00 3.91
806 851 9.196552 GAGCTACTTTTTCATTTTGTATTGCTT 57.803 29.630 0.00 0.00 0.00 3.91
807 852 8.981647 AGCTACTTTTTCATTTTGTATTGCTTG 58.018 29.630 0.00 0.00 0.00 4.01
808 853 8.223100 GCTACTTTTTCATTTTGTATTGCTTGG 58.777 33.333 0.00 0.00 0.00 3.61
809 854 6.958255 ACTTTTTCATTTTGTATTGCTTGGC 58.042 32.000 0.00 0.00 0.00 4.52
810 855 5.938438 TTTTCATTTTGTATTGCTTGGCC 57.062 34.783 0.00 0.00 0.00 5.36
811 856 3.229276 TCATTTTGTATTGCTTGGCCG 57.771 42.857 0.00 0.00 0.00 6.13
812 857 2.560542 TCATTTTGTATTGCTTGGCCGT 59.439 40.909 0.00 0.00 0.00 5.68
813 858 3.759086 TCATTTTGTATTGCTTGGCCGTA 59.241 39.130 0.00 0.00 0.00 4.02
814 859 4.400884 TCATTTTGTATTGCTTGGCCGTAT 59.599 37.500 0.00 0.00 0.00 3.06
815 860 5.590663 TCATTTTGTATTGCTTGGCCGTATA 59.409 36.000 0.00 0.00 0.00 1.47
816 861 4.886247 TTTGTATTGCTTGGCCGTATAC 57.114 40.909 0.00 2.15 0.00 1.47
817 862 3.830744 TGTATTGCTTGGCCGTATACT 57.169 42.857 0.00 0.00 0.00 2.12
818 863 4.145365 TGTATTGCTTGGCCGTATACTT 57.855 40.909 0.00 0.00 0.00 2.24
819 864 3.874543 TGTATTGCTTGGCCGTATACTTG 59.125 43.478 0.00 0.00 0.00 3.16
820 865 2.483014 TTGCTTGGCCGTATACTTGT 57.517 45.000 0.00 0.00 0.00 3.16
821 866 2.483014 TGCTTGGCCGTATACTTGTT 57.517 45.000 0.00 0.00 0.00 2.83
822 867 2.352388 TGCTTGGCCGTATACTTGTTC 58.648 47.619 0.00 0.00 0.00 3.18
823 868 1.326548 GCTTGGCCGTATACTTGTTCG 59.673 52.381 0.00 0.00 0.00 3.95
824 869 1.931172 CTTGGCCGTATACTTGTTCGG 59.069 52.381 0.00 0.00 44.86 4.30
825 870 0.896923 TGGCCGTATACTTGTTCGGT 59.103 50.000 0.00 0.00 44.07 4.69
826 871 1.275856 TGGCCGTATACTTGTTCGGTT 59.724 47.619 0.00 0.00 44.07 4.44
827 872 1.662122 GGCCGTATACTTGTTCGGTTG 59.338 52.381 0.56 0.00 44.07 3.77
828 873 2.340337 GCCGTATACTTGTTCGGTTGT 58.660 47.619 0.56 0.00 44.07 3.32
829 874 2.738314 GCCGTATACTTGTTCGGTTGTT 59.262 45.455 0.56 0.00 44.07 2.83
830 875 3.423907 GCCGTATACTTGTTCGGTTGTTG 60.424 47.826 0.56 0.00 44.07 3.33
831 876 3.742369 CCGTATACTTGTTCGGTTGTTGT 59.258 43.478 0.56 0.00 38.45 3.32
832 877 4.211794 CCGTATACTTGTTCGGTTGTTGTT 59.788 41.667 0.56 0.00 38.45 2.83
833 878 5.277442 CCGTATACTTGTTCGGTTGTTGTTT 60.277 40.000 0.56 0.00 38.45 2.83
834 879 6.193761 CGTATACTTGTTCGGTTGTTGTTTT 58.806 36.000 0.56 0.00 0.00 2.43
835 880 7.343691 CGTATACTTGTTCGGTTGTTGTTTTA 58.656 34.615 0.56 0.00 0.00 1.52
836 881 8.011106 CGTATACTTGTTCGGTTGTTGTTTTAT 58.989 33.333 0.56 0.00 0.00 1.40
841 886 9.240159 ACTTGTTCGGTTGTTGTTTTATATTTC 57.760 29.630 0.00 0.00 0.00 2.17
842 887 9.458374 CTTGTTCGGTTGTTGTTTTATATTTCT 57.542 29.630 0.00 0.00 0.00 2.52
843 888 9.804758 TTGTTCGGTTGTTGTTTTATATTTCTT 57.195 25.926 0.00 0.00 0.00 2.52
844 889 9.804758 TGTTCGGTTGTTGTTTTATATTTCTTT 57.195 25.926 0.00 0.00 0.00 2.52
846 891 8.716619 TCGGTTGTTGTTTTATATTTCTTTCG 57.283 30.769 0.00 0.00 0.00 3.46
847 892 7.804129 TCGGTTGTTGTTTTATATTTCTTTCGG 59.196 33.333 0.00 0.00 0.00 4.30
848 893 7.409980 CGGTTGTTGTTTTATATTTCTTTCGGC 60.410 37.037 0.00 0.00 0.00 5.54
849 894 7.597369 GGTTGTTGTTTTATATTTCTTTCGGCT 59.403 33.333 0.00 0.00 0.00 5.52
850 895 8.635983 GTTGTTGTTTTATATTTCTTTCGGCTC 58.364 33.333 0.00 0.00 0.00 4.70
851 896 7.018826 TGTTGTTTTATATTTCTTTCGGCTCG 58.981 34.615 0.00 0.00 0.00 5.03
852 897 6.730960 TGTTTTATATTTCTTTCGGCTCGT 57.269 33.333 0.00 0.00 0.00 4.18
853 898 7.830940 TGTTTTATATTTCTTTCGGCTCGTA 57.169 32.000 0.00 0.00 0.00 3.43
854 899 8.254178 TGTTTTATATTTCTTTCGGCTCGTAA 57.746 30.769 0.00 0.00 0.00 3.18
855 900 8.885722 TGTTTTATATTTCTTTCGGCTCGTAAT 58.114 29.630 0.00 0.00 0.00 1.89
858 903 9.531942 TTTATATTTCTTTCGGCTCGTAATACA 57.468 29.630 0.00 0.00 0.00 2.29
859 904 5.713822 ATTTCTTTCGGCTCGTAATACAC 57.286 39.130 0.00 0.00 0.00 2.90
860 905 4.445452 TTCTTTCGGCTCGTAATACACT 57.555 40.909 0.00 0.00 0.00 3.55
861 906 4.025015 TCTTTCGGCTCGTAATACACTC 57.975 45.455 0.00 0.00 0.00 3.51
862 907 3.441222 TCTTTCGGCTCGTAATACACTCA 59.559 43.478 0.00 0.00 0.00 3.41
949 994 2.097038 CGCTCTCTTGTGCTTCCGG 61.097 63.158 0.00 0.00 0.00 5.14
957 1002 1.734465 CTTGTGCTTCCGGTTCTCATC 59.266 52.381 0.00 0.00 0.00 2.92
1698 1759 5.517924 TCATCTCACTTCATCCTCTTCTCT 58.482 41.667 0.00 0.00 0.00 3.10
1703 1764 3.768757 CACTTCATCCTCTTCTCTGACCT 59.231 47.826 0.00 0.00 0.00 3.85
1846 1907 1.756561 TCGATCAGATGGGGTGCGA 60.757 57.895 0.00 0.00 0.00 5.10
1894 1955 1.604593 ATGCCGCTGCCACTTCTTT 60.605 52.632 0.00 0.00 36.33 2.52
2248 2311 1.492764 TGGATCGTTCCCCTCTTACC 58.507 55.000 10.02 0.00 41.83 2.85
2253 2316 0.535797 CGTTCCCCTCTTACCACTCC 59.464 60.000 0.00 0.00 0.00 3.85
2260 2323 3.136626 CCCCTCTTACCACTCCCTATTTG 59.863 52.174 0.00 0.00 0.00 2.32
2268 2331 3.522343 ACCACTCCCTATTTGAGGTTACC 59.478 47.826 0.00 0.00 45.03 2.85
2290 2353 4.201647 CCGCAGCAAAATTTTATCTGCTTG 60.202 41.667 32.02 25.04 42.37 4.01
2306 2369 4.338118 TCTGCTTGAACCTTCGTTTGAATT 59.662 37.500 0.00 0.00 32.61 2.17
2307 2370 4.606961 TGCTTGAACCTTCGTTTGAATTC 58.393 39.130 0.00 0.00 32.61 2.17
2322 2385 6.345250 CGTTTGAATTCTTTGATTGTGCAGAC 60.345 38.462 7.05 0.00 0.00 3.51
2412 2475 8.871686 ATGGGATTTTTGCGAAAGTATAATTC 57.128 30.769 0.00 0.00 0.00 2.17
2476 2539 9.582431 TCTTCTATGTTTCTAACGTTGGATTAG 57.418 33.333 15.51 13.08 0.00 1.73
2492 2555 3.620821 GGATTAGCTTGTGCAGAGAGAAC 59.379 47.826 0.00 0.00 42.74 3.01
2508 2571 2.229784 GAGAACCTTGCTCCACATTTGG 59.770 50.000 0.00 0.00 45.56 3.28
2543 2606 4.520492 ACCAAGCAGTAGACTTCATTTTGG 59.480 41.667 0.00 0.00 38.71 3.28
2615 2678 7.524717 TCTAAGCTATGCATAGTGTGATGTA 57.475 36.000 29.62 13.31 32.57 2.29
2645 2708 7.044181 CCAGTGAGATATTAAGAAAGCACTCA 58.956 38.462 0.00 0.00 33.51 3.41
2668 2731 5.344743 ACTATGATGAACACGACATTCCT 57.655 39.130 0.00 0.00 0.00 3.36
2772 2835 9.269453 AGAAAACACAAACTTATCTACACTACC 57.731 33.333 0.00 0.00 0.00 3.18
2779 2842 9.787435 ACAAACTTATCTACACTACCAATTCAA 57.213 29.630 0.00 0.00 0.00 2.69
2836 2899 7.359595 CCATTTGGTCCATATGTACATTTACG 58.640 38.462 14.77 0.28 0.00 3.18
2847 2910 5.839262 TGTACATTTACGTGCTCAAAGAG 57.161 39.130 0.00 0.00 0.00 2.85
2858 2921 4.697514 GTGCTCAAAGAGTGCAGGATATA 58.302 43.478 0.00 0.00 46.32 0.86
2866 2929 5.220710 AGAGTGCAGGATATAATGTGGTC 57.779 43.478 0.00 0.00 0.00 4.02
2914 2977 6.670695 ACACAAAGGCCAATTCTAGATTTT 57.329 33.333 5.01 0.00 0.00 1.82
2990 3053 9.730705 TTATCAATTCAAGCAGGATAGAATAGG 57.269 33.333 0.00 0.00 31.01 2.57
2993 3056 5.573380 TTCAAGCAGGATAGAATAGGCAT 57.427 39.130 0.00 0.00 0.00 4.40
3146 3210 2.094752 CCCTTTGGGTCTTTTGTATGCG 60.095 50.000 0.00 0.00 38.25 4.73
3156 3220 0.039035 TTTGTATGCGGCCTTTCCCT 59.961 50.000 0.00 0.00 0.00 4.20
3180 3244 1.449782 TCTGCAAGAGGCCGTTTCA 59.550 52.632 0.00 0.00 38.67 2.69
3190 3254 1.202879 AGGCCGTTTCAAGACCAATGA 60.203 47.619 0.00 0.00 0.00 2.57
3747 3811 3.890756 TGGTCTGACAGAAACATGCAATT 59.109 39.130 6.76 0.00 0.00 2.32
3764 3828 3.487544 GCAATTCAACCTTACGCCTGATC 60.488 47.826 0.00 0.00 0.00 2.92
3765 3829 2.004583 TTCAACCTTACGCCTGATCG 57.995 50.000 0.00 0.00 0.00 3.69
3766 3830 1.179152 TCAACCTTACGCCTGATCGA 58.821 50.000 0.00 0.00 0.00 3.59
3767 3831 1.546923 TCAACCTTACGCCTGATCGAA 59.453 47.619 0.00 0.00 0.00 3.71
3768 3832 2.028839 TCAACCTTACGCCTGATCGAAA 60.029 45.455 0.00 0.00 0.00 3.46
3769 3833 2.936498 CAACCTTACGCCTGATCGAAAT 59.064 45.455 0.00 0.00 0.00 2.17
3770 3834 2.822764 ACCTTACGCCTGATCGAAATC 58.177 47.619 0.00 0.00 0.00 2.17
3771 3835 2.135933 CCTTACGCCTGATCGAAATCC 58.864 52.381 0.00 0.00 0.00 3.01
3772 3836 2.483013 CCTTACGCCTGATCGAAATCCA 60.483 50.000 0.00 0.00 0.00 3.41
3773 3837 3.393800 CTTACGCCTGATCGAAATCCAT 58.606 45.455 0.00 0.00 0.00 3.41
3774 3838 1.871080 ACGCCTGATCGAAATCCATC 58.129 50.000 0.00 0.00 0.00 3.51
3775 3839 1.138859 ACGCCTGATCGAAATCCATCA 59.861 47.619 0.00 0.00 0.00 3.07
3776 3840 2.224378 ACGCCTGATCGAAATCCATCAT 60.224 45.455 0.00 0.00 0.00 2.45
3777 3841 2.414481 CGCCTGATCGAAATCCATCATC 59.586 50.000 0.00 0.00 0.00 2.92
3778 3842 3.672808 GCCTGATCGAAATCCATCATCT 58.327 45.455 0.00 0.00 0.00 2.90
3779 3843 3.683822 GCCTGATCGAAATCCATCATCTC 59.316 47.826 0.00 0.00 0.00 2.75
3780 3844 4.801914 GCCTGATCGAAATCCATCATCTCA 60.802 45.833 0.00 0.00 0.00 3.27
3781 3845 5.489249 CCTGATCGAAATCCATCATCTCAT 58.511 41.667 0.00 0.00 0.00 2.90
3782 3846 5.581479 CCTGATCGAAATCCATCATCTCATC 59.419 44.000 0.00 0.00 0.00 2.92
3783 3847 5.166398 TGATCGAAATCCATCATCTCATCG 58.834 41.667 0.00 0.00 0.00 3.84
3784 3848 4.853924 TCGAAATCCATCATCTCATCGA 57.146 40.909 0.00 0.00 35.92 3.59
3785 3849 5.200368 TCGAAATCCATCATCTCATCGAA 57.800 39.130 0.00 0.00 35.42 3.71
3786 3850 5.600696 TCGAAATCCATCATCTCATCGAAA 58.399 37.500 0.00 0.00 35.42 3.46
3787 3851 5.693555 TCGAAATCCATCATCTCATCGAAAG 59.306 40.000 0.00 0.00 35.42 2.62
3789 3853 6.346439 CGAAATCCATCATCTCATCGAAAGAC 60.346 42.308 3.25 0.00 46.97 3.01
3790 3854 3.969899 TCCATCATCTCATCGAAAGACG 58.030 45.455 3.25 0.00 46.97 4.18
3791 3855 3.055591 CCATCATCTCATCGAAAGACGG 58.944 50.000 3.25 0.59 46.97 4.79
3792 3856 2.871182 TCATCTCATCGAAAGACGGG 57.129 50.000 3.25 0.00 46.97 5.28
3793 3857 2.375146 TCATCTCATCGAAAGACGGGA 58.625 47.619 3.25 0.58 46.97 5.14
3794 3858 2.758423 TCATCTCATCGAAAGACGGGAA 59.242 45.455 3.25 0.00 46.97 3.97
3795 3859 2.649331 TCTCATCGAAAGACGGGAAC 57.351 50.000 0.00 0.00 46.97 3.62
3796 3860 1.203994 TCTCATCGAAAGACGGGAACC 59.796 52.381 0.00 0.00 46.97 3.62
3797 3861 1.204941 CTCATCGAAAGACGGGAACCT 59.795 52.381 0.00 0.00 46.87 3.50
3798 3862 1.203994 TCATCGAAAGACGGGAACCTC 59.796 52.381 0.00 0.00 46.87 3.85
3799 3863 0.535797 ATCGAAAGACGGGAACCTCC 59.464 55.000 0.00 0.00 46.87 4.30
3846 3912 9.804758 ATGCAAGTTACTCTAGTTAGTTCATAC 57.195 33.333 0.00 0.00 0.00 2.39
3847 3913 8.799367 TGCAAGTTACTCTAGTTAGTTCATACA 58.201 33.333 0.00 0.00 0.00 2.29
3941 4007 2.208326 AGTTGCTTTTTGCTCCAACG 57.792 45.000 0.00 0.00 41.65 4.10
4011 4077 7.013274 GCCCTAAGTTATGCTGTAAAATCATCA 59.987 37.037 0.00 0.00 0.00 3.07
4030 4096 5.308759 TCATCAATGATATGCTCTGGGAGAA 59.691 40.000 0.00 0.00 0.00 2.87
4032 4098 5.618236 TCAATGATATGCTCTGGGAGAAAG 58.382 41.667 0.00 0.00 0.00 2.62
4293 4375 6.926272 GGCTTCATGGTGTTTGTTTTACATTA 59.074 34.615 0.00 0.00 0.00 1.90
4435 4517 1.068885 CCAATGCCGAGTAAACGCAAA 60.069 47.619 0.00 0.00 0.00 3.68
4436 4518 2.415357 CCAATGCCGAGTAAACGCAAAT 60.415 45.455 0.00 0.00 0.00 2.32
4437 4519 3.181505 CCAATGCCGAGTAAACGCAAATA 60.182 43.478 0.00 0.00 0.00 1.40
4438 4520 3.668596 ATGCCGAGTAAACGCAAATAC 57.331 42.857 0.00 0.00 0.00 1.89
4439 4521 1.390803 TGCCGAGTAAACGCAAATACG 59.609 47.619 0.00 0.00 39.50 3.06
4440 4522 1.849348 GCCGAGTAAACGCAAATACGC 60.849 52.381 0.00 0.00 36.19 4.42
4441 4523 1.390803 CCGAGTAAACGCAAATACGCA 59.609 47.619 0.00 0.00 36.19 5.24
4442 4524 2.159814 CCGAGTAAACGCAAATACGCAA 60.160 45.455 0.00 0.00 36.19 4.85
4456 4538 8.007152 CGCAAATACGCAATGACATAAACTATA 58.993 33.333 0.00 0.00 0.00 1.31
4727 4809 6.626302 TGATATGCATGGCAATATGTTCATG 58.374 36.000 10.16 0.00 43.62 3.07
4728 4810 4.948341 ATGCATGGCAATATGTTCATGT 57.052 36.364 0.00 0.00 43.62 3.21
4970 5052 8.579850 AGTCATTTAGTCTTGAATTATTGGCA 57.420 30.769 0.00 0.00 0.00 4.92
4971 5053 9.193806 AGTCATTTAGTCTTGAATTATTGGCAT 57.806 29.630 0.00 0.00 0.00 4.40
4972 5054 9.241317 GTCATTTAGTCTTGAATTATTGGCATG 57.759 33.333 0.00 0.00 0.00 4.06
4973 5055 8.415553 TCATTTAGTCTTGAATTATTGGCATGG 58.584 33.333 0.00 0.00 0.00 3.66
4974 5056 7.953005 TTTAGTCTTGAATTATTGGCATGGA 57.047 32.000 0.00 0.00 0.00 3.41
4975 5057 8.537728 TTTAGTCTTGAATTATTGGCATGGAT 57.462 30.769 0.00 0.00 0.00 3.41
4976 5058 8.537728 TTAGTCTTGAATTATTGGCATGGATT 57.462 30.769 0.00 0.00 0.00 3.01
4977 5059 7.427989 AGTCTTGAATTATTGGCATGGATTT 57.572 32.000 0.00 0.00 0.00 2.17
4978 5060 7.495055 AGTCTTGAATTATTGGCATGGATTTC 58.505 34.615 0.00 0.00 0.00 2.17
4979 5061 6.418819 GTCTTGAATTATTGGCATGGATTTCG 59.581 38.462 0.00 0.00 0.00 3.46
4980 5062 6.320926 TCTTGAATTATTGGCATGGATTTCGA 59.679 34.615 0.00 0.00 0.00 3.71
4981 5063 6.075762 TGAATTATTGGCATGGATTTCGAG 57.924 37.500 0.00 0.00 0.00 4.04
4982 5064 5.593909 TGAATTATTGGCATGGATTTCGAGT 59.406 36.000 0.00 0.00 0.00 4.18
4983 5065 5.695851 ATTATTGGCATGGATTTCGAGTC 57.304 39.130 0.00 0.00 0.00 3.36
4984 5066 1.368641 TTGGCATGGATTTCGAGTCG 58.631 50.000 6.09 6.09 0.00 4.18
4985 5067 1.089481 TGGCATGGATTTCGAGTCGC 61.089 55.000 7.92 0.00 0.00 5.19
4986 5068 0.811616 GGCATGGATTTCGAGTCGCT 60.812 55.000 7.92 0.00 0.00 4.93
4987 5069 0.579156 GCATGGATTTCGAGTCGCTC 59.421 55.000 7.92 4.43 0.00 5.03
5034 5116 8.804688 GACTAGTCTATGAGTCGCAAAAATAT 57.195 34.615 15.91 0.00 33.27 1.28
5035 5117 8.581057 ACTAGTCTATGAGTCGCAAAAATATG 57.419 34.615 0.00 0.00 0.00 1.78
5036 5118 6.851222 AGTCTATGAGTCGCAAAAATATGG 57.149 37.500 0.00 0.00 0.00 2.74
5037 5119 6.349300 AGTCTATGAGTCGCAAAAATATGGT 58.651 36.000 0.00 0.00 0.00 3.55
5038 5120 6.480320 AGTCTATGAGTCGCAAAAATATGGTC 59.520 38.462 0.00 0.00 0.00 4.02
5039 5121 4.536364 ATGAGTCGCAAAAATATGGTCG 57.464 40.909 0.00 0.00 0.00 4.79
5040 5122 3.591023 TGAGTCGCAAAAATATGGTCGA 58.409 40.909 0.00 0.00 0.00 4.20
5041 5123 3.369756 TGAGTCGCAAAAATATGGTCGAC 59.630 43.478 7.13 7.13 44.36 4.20
5043 5125 3.924610 GTCGCAAAAATATGGTCGACTC 58.075 45.455 16.46 6.30 41.84 3.36
5044 5126 3.369756 GTCGCAAAAATATGGTCGACTCA 59.630 43.478 16.46 12.14 41.84 3.41
5045 5127 3.616821 TCGCAAAAATATGGTCGACTCAG 59.383 43.478 16.46 0.00 0.00 3.35
5046 5128 3.685058 GCAAAAATATGGTCGACTCAGC 58.315 45.455 16.46 6.06 0.00 4.26
5047 5129 3.375299 GCAAAAATATGGTCGACTCAGCT 59.625 43.478 16.46 0.87 0.00 4.24
5048 5130 4.142600 GCAAAAATATGGTCGACTCAGCTT 60.143 41.667 16.46 6.75 0.00 3.74
5049 5131 5.064707 GCAAAAATATGGTCGACTCAGCTTA 59.935 40.000 16.46 1.81 0.00 3.09
5050 5132 6.709643 CAAAAATATGGTCGACTCAGCTTAG 58.290 40.000 16.46 0.00 0.00 2.18
5051 5133 5.599999 AAATATGGTCGACTCAGCTTAGT 57.400 39.130 16.46 0.00 0.00 2.24
5052 5134 2.949451 ATGGTCGACTCAGCTTAGTG 57.051 50.000 16.46 0.00 0.00 2.74
5053 5135 1.617322 TGGTCGACTCAGCTTAGTGT 58.383 50.000 16.46 0.00 0.00 3.55
5054 5136 1.540267 TGGTCGACTCAGCTTAGTGTC 59.460 52.381 16.46 0.80 0.00 3.67
5059 5141 3.125698 GACTCAGCTTAGTGTCGACTC 57.874 52.381 17.92 13.63 33.21 3.36
5060 5142 1.465387 ACTCAGCTTAGTGTCGACTCG 59.535 52.381 17.92 1.95 33.21 4.18
5061 5143 0.168348 TCAGCTTAGTGTCGACTCGC 59.832 55.000 17.92 11.93 33.21 5.03
5062 5144 1.128724 CAGCTTAGTGTCGACTCGCG 61.129 60.000 17.92 0.00 42.69 5.87
5070 5152 3.475944 TCGACTCGCGACTCTGAG 58.524 61.111 3.71 2.45 45.59 3.35
5081 5163 1.361793 GACTCTGAGTCGCGACTAGT 58.638 55.000 39.33 35.48 42.66 2.57
5082 5164 1.325338 GACTCTGAGTCGCGACTAGTC 59.675 57.143 36.09 36.09 42.66 2.59
5083 5165 1.337917 ACTCTGAGTCGCGACTAGTCA 60.338 52.381 39.33 30.22 42.66 3.41
5084 5166 1.061421 CTCTGAGTCGCGACTAGTCAC 59.939 57.143 39.33 26.64 42.66 3.67
5085 5167 0.796927 CTGAGTCGCGACTAGTCACA 59.203 55.000 39.33 29.42 42.66 3.58
5086 5168 1.197036 CTGAGTCGCGACTAGTCACAA 59.803 52.381 39.33 18.16 42.66 3.33
5087 5169 1.069432 TGAGTCGCGACTAGTCACAAC 60.069 52.381 39.33 24.54 42.66 3.32
5088 5170 0.110328 AGTCGCGACTAGTCACAACG 60.110 55.000 38.67 18.08 40.43 4.10
5089 5171 1.441515 TCGCGACTAGTCACAACGC 60.442 57.895 22.37 17.95 44.64 4.84
5090 5172 4.238385 GCGACTAGTCACAACGCA 57.762 55.556 22.37 0.00 46.75 5.24
5091 5173 2.062779 GCGACTAGTCACAACGCAG 58.937 57.895 22.37 4.87 46.75 5.18
5092 5174 1.344942 GCGACTAGTCACAACGCAGG 61.345 60.000 22.37 4.17 46.75 4.85
5093 5175 1.344942 CGACTAGTCACAACGCAGGC 61.345 60.000 22.37 0.00 0.00 4.85
5094 5176 0.038159 GACTAGTCACAACGCAGGCT 60.038 55.000 18.20 0.00 0.00 4.58
5095 5177 0.038159 ACTAGTCACAACGCAGGCTC 60.038 55.000 0.00 0.00 0.00 4.70
5096 5178 1.073216 CTAGTCACAACGCAGGCTCG 61.073 60.000 5.08 5.08 0.00 5.03
5097 5179 1.520600 TAGTCACAACGCAGGCTCGA 61.521 55.000 12.16 0.00 0.00 4.04
5098 5180 2.355837 TCACAACGCAGGCTCGAC 60.356 61.111 12.16 0.00 0.00 4.20
5099 5181 2.356313 CACAACGCAGGCTCGACT 60.356 61.111 12.16 0.00 0.00 4.18
5100 5182 1.956170 CACAACGCAGGCTCGACTT 60.956 57.895 12.16 0.00 0.00 3.01
5101 5183 1.664965 ACAACGCAGGCTCGACTTC 60.665 57.895 12.16 0.00 0.00 3.01
5102 5184 1.373497 CAACGCAGGCTCGACTTCT 60.373 57.895 12.16 0.00 0.00 2.85
5103 5185 0.946221 CAACGCAGGCTCGACTTCTT 60.946 55.000 12.16 0.00 0.00 2.52
5104 5186 0.667792 AACGCAGGCTCGACTTCTTC 60.668 55.000 12.16 0.00 0.00 2.87
5105 5187 1.807573 CGCAGGCTCGACTTCTTCC 60.808 63.158 0.91 0.00 0.00 3.46
5106 5188 1.807573 GCAGGCTCGACTTCTTCCG 60.808 63.158 0.00 0.00 0.00 4.30
5107 5189 1.883732 CAGGCTCGACTTCTTCCGA 59.116 57.895 0.00 0.00 0.00 4.55
5114 5196 3.022981 GACTTCTTCCGAGTCGCTG 57.977 57.895 7.12 0.00 34.76 5.18
5115 5197 1.073768 GACTTCTTCCGAGTCGCTGC 61.074 60.000 7.12 0.00 34.76 5.25
5116 5198 1.807573 CTTCTTCCGAGTCGCTGCC 60.808 63.158 7.12 0.00 0.00 4.85
5117 5199 3.296709 TTCTTCCGAGTCGCTGCCC 62.297 63.158 7.12 0.00 0.00 5.36
5118 5200 4.821589 CTTCCGAGTCGCTGCCCC 62.822 72.222 7.12 0.00 0.00 5.80
5122 5204 4.504916 CGAGTCGCTGCCCCAGAG 62.505 72.222 0.00 0.00 32.44 3.35
5123 5205 4.828925 GAGTCGCTGCCCCAGAGC 62.829 72.222 0.00 0.00 32.44 4.09
5128 5210 4.828925 GCTGCCCCAGAGCGACTC 62.829 72.222 0.00 0.00 32.44 3.36
5129 5211 4.504916 CTGCCCCAGAGCGACTCG 62.505 72.222 0.00 0.00 35.36 4.18
5152 5234 3.372795 AGTCGCGACTCAAAAACCA 57.627 47.368 34.98 0.00 36.92 3.67
5153 5235 1.878953 AGTCGCGACTCAAAAACCAT 58.121 45.000 34.98 10.31 36.92 3.55
5154 5236 1.531149 AGTCGCGACTCAAAAACCATG 59.469 47.619 34.98 0.00 36.92 3.66
5155 5237 1.529438 GTCGCGACTCAAAAACCATGA 59.471 47.619 31.12 0.00 0.00 3.07
5156 5238 2.159627 GTCGCGACTCAAAAACCATGAT 59.840 45.455 31.12 0.00 0.00 2.45
5157 5239 2.811431 TCGCGACTCAAAAACCATGATT 59.189 40.909 3.71 0.00 0.00 2.57
5158 5240 3.997681 TCGCGACTCAAAAACCATGATTA 59.002 39.130 3.71 0.00 0.00 1.75
5159 5241 4.634004 TCGCGACTCAAAAACCATGATTAT 59.366 37.500 3.71 0.00 0.00 1.28
5160 5242 5.123186 TCGCGACTCAAAAACCATGATTATT 59.877 36.000 3.71 0.00 0.00 1.40
5161 5243 5.227805 CGCGACTCAAAAACCATGATTATTG 59.772 40.000 0.00 0.00 0.00 1.90
5162 5244 5.516339 GCGACTCAAAAACCATGATTATTGG 59.484 40.000 0.00 0.00 40.26 3.16
5163 5245 6.035843 CGACTCAAAAACCATGATTATTGGG 58.964 40.000 0.00 0.00 38.64 4.12
5289 5371 4.051922 GTCGCAATTAGGATACACAGAGG 58.948 47.826 0.00 0.00 41.41 3.69
5314 5396 3.314357 AGTTAACGGGTTTGAGCTTTCAC 59.686 43.478 0.00 0.00 0.00 3.18
5362 5444 4.220602 CAGCCTACAGCCCATTTAGTTTTT 59.779 41.667 0.00 0.00 45.47 1.94
5389 5471 2.722094 TGCGGGATTGCTCATTTAGTT 58.278 42.857 0.00 0.00 35.36 2.24
5462 5545 8.879227 TCTTCATTGGTCCAAATTTATTCCTTT 58.121 29.630 8.75 0.00 0.00 3.11
5495 5578 5.245977 TGATCTTCACAGACTGTATGGTTGA 59.754 40.000 8.02 0.00 0.00 3.18
5663 5748 8.994170 GCTACCTGGAAACTTTATCATTAGATC 58.006 37.037 0.00 0.00 35.67 2.75
5857 5943 1.552792 TGCGTGTGGTCATCCTATTCA 59.447 47.619 0.00 0.00 34.23 2.57
5871 5957 5.628797 TCCTATTCATGTGTTGCAGGATA 57.371 39.130 0.00 0.00 37.76 2.59
5936 6022 2.404265 TGTTGCGAGCAATTTGACAG 57.596 45.000 13.89 0.00 38.28 3.51
6042 6128 2.771943 ACAACAGAGTCTTTCAGTCCCA 59.228 45.455 0.00 0.00 0.00 4.37
6049 6135 2.952310 AGTCTTTCAGTCCCAAACAAGC 59.048 45.455 0.00 0.00 0.00 4.01
6089 6175 4.868171 TGAAACCCATAAGATCTCGAAACG 59.132 41.667 0.00 0.00 0.00 3.60
6166 6252 4.762289 AGTCCTTGGTGATATTCCAGTC 57.238 45.455 1.83 0.00 36.28 3.51
6186 6272 4.161377 AGTCCTTCAGGTCTCTCTTTATGC 59.839 45.833 0.00 0.00 36.34 3.14
6268 6357 4.274950 CACGACAGTGTGAAAAATAGGGTT 59.725 41.667 0.00 0.00 42.55 4.11
6363 6452 6.969473 GCCACAGTTGAGAGCTTTTTATTATC 59.031 38.462 0.00 0.00 0.00 1.75
6541 6634 7.408756 TCCAGAAATATTTGAAGAATGGGTG 57.591 36.000 5.17 0.00 0.00 4.61
6662 6755 4.383861 TGGCTCCTGCTGCTCACG 62.384 66.667 0.00 0.00 39.59 4.35
6844 6937 6.422333 TCTGGAAGCACATATTGTTCCATTA 58.578 36.000 3.22 0.00 41.05 1.90
6968 7061 0.957395 CGCCACTGAACAGCCAGAAT 60.957 55.000 1.46 0.00 37.59 2.40
7172 7265 8.458573 TTCATAAATCTTTATAACCGTGGCAT 57.541 30.769 0.00 0.00 32.39 4.40
7217 7310 7.470900 CCTTGCATTTCTTGTCTTCTATTCTC 58.529 38.462 0.00 0.00 0.00 2.87
7438 7697 1.468127 TGTAAGACCATTGCATGTGCG 59.532 47.619 0.01 0.00 45.83 5.34
7442 7701 2.182284 CCATTGCATGTGCGGTGG 59.818 61.111 12.13 12.13 45.83 4.61
7477 7736 4.898320 TGTCTGTTACTCTTGATGTGCAT 58.102 39.130 0.00 0.00 0.00 3.96
7658 7917 3.782523 TGGCCTTCTGGAACTAGAATCAT 59.217 43.478 3.32 0.00 36.21 2.45
7674 7933 8.844244 ACTAGAATCATAAATGAATTGGCTGTC 58.156 33.333 0.00 0.00 40.69 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.226777 ACTGTCGGCTTAGCTCTATCAT 58.773 45.455 3.59 0.00 0.00 2.45
193 203 0.105224 TGGACCGCGACTTGAGAAAA 59.895 50.000 8.23 0.00 0.00 2.29
200 210 2.742372 GTGCATGGACCGCGACTT 60.742 61.111 8.23 0.00 0.00 3.01
226 236 1.883084 GAGACATAGCCAACCGCCG 60.883 63.158 0.00 0.00 38.78 6.46
296 314 4.033776 CACCACCATGGGGCTCGT 62.034 66.667 18.09 2.04 43.37 4.18
355 389 4.180946 CCGAGCCACTCTCCGTCG 62.181 72.222 0.00 0.00 38.62 5.12
551 595 2.316108 GGACACAAAGGGAAACACCAT 58.684 47.619 0.00 0.00 41.20 3.55
565 609 2.446994 ACCCAGAACCCGGACACA 60.447 61.111 0.73 0.00 0.00 3.72
652 696 4.820894 AGTACACCTAATCTCCACAACC 57.179 45.455 0.00 0.00 0.00 3.77
789 834 3.993081 CGGCCAAGCAATACAAAATGAAA 59.007 39.130 2.24 0.00 0.00 2.69
795 840 4.519213 AGTATACGGCCAAGCAATACAAA 58.481 39.130 2.24 0.00 0.00 2.83
797 842 3.830744 AGTATACGGCCAAGCAATACA 57.169 42.857 2.24 0.00 0.00 2.29
798 843 3.875134 ACAAGTATACGGCCAAGCAATAC 59.125 43.478 2.24 2.81 0.00 1.89
799 844 4.145365 ACAAGTATACGGCCAAGCAATA 57.855 40.909 2.24 0.00 0.00 1.90
800 845 2.999331 ACAAGTATACGGCCAAGCAAT 58.001 42.857 2.24 0.00 0.00 3.56
801 846 2.483014 ACAAGTATACGGCCAAGCAA 57.517 45.000 2.24 0.00 0.00 3.91
802 847 2.352388 GAACAAGTATACGGCCAAGCA 58.648 47.619 2.24 0.00 0.00 3.91
803 848 1.326548 CGAACAAGTATACGGCCAAGC 59.673 52.381 2.24 0.00 0.00 4.01
804 849 1.931172 CCGAACAAGTATACGGCCAAG 59.069 52.381 2.24 0.00 38.98 3.61
805 850 2.012937 CCGAACAAGTATACGGCCAA 57.987 50.000 2.24 0.00 38.98 4.52
806 851 3.744941 CCGAACAAGTATACGGCCA 57.255 52.632 2.24 0.00 38.98 5.36
810 855 4.977741 ACAACAACCGAACAAGTATACG 57.022 40.909 0.00 0.00 0.00 3.06
815 860 9.240159 GAAATATAAAACAACAACCGAACAAGT 57.760 29.630 0.00 0.00 0.00 3.16
816 861 9.458374 AGAAATATAAAACAACAACCGAACAAG 57.542 29.630 0.00 0.00 0.00 3.16
817 862 9.804758 AAGAAATATAAAACAACAACCGAACAA 57.195 25.926 0.00 0.00 0.00 2.83
818 863 9.804758 AAAGAAATATAAAACAACAACCGAACA 57.195 25.926 0.00 0.00 0.00 3.18
820 865 9.171701 CGAAAGAAATATAAAACAACAACCGAA 57.828 29.630 0.00 0.00 0.00 4.30
821 866 7.804129 CCGAAAGAAATATAAAACAACAACCGA 59.196 33.333 0.00 0.00 0.00 4.69
822 867 7.409980 GCCGAAAGAAATATAAAACAACAACCG 60.410 37.037 0.00 0.00 0.00 4.44
823 868 7.597369 AGCCGAAAGAAATATAAAACAACAACC 59.403 33.333 0.00 0.00 0.00 3.77
824 869 8.515473 AGCCGAAAGAAATATAAAACAACAAC 57.485 30.769 0.00 0.00 0.00 3.32
825 870 7.535940 CGAGCCGAAAGAAATATAAAACAACAA 59.464 33.333 0.00 0.00 0.00 2.83
826 871 7.018826 CGAGCCGAAAGAAATATAAAACAACA 58.981 34.615 0.00 0.00 0.00 3.33
827 872 7.019418 ACGAGCCGAAAGAAATATAAAACAAC 58.981 34.615 1.50 0.00 0.00 3.32
828 873 7.136289 ACGAGCCGAAAGAAATATAAAACAA 57.864 32.000 1.50 0.00 0.00 2.83
829 874 6.730960 ACGAGCCGAAAGAAATATAAAACA 57.269 33.333 1.50 0.00 0.00 2.83
832 877 9.531942 TGTATTACGAGCCGAAAGAAATATAAA 57.468 29.630 1.50 0.00 0.00 1.40
833 878 8.971321 GTGTATTACGAGCCGAAAGAAATATAA 58.029 33.333 1.50 0.00 0.00 0.98
834 879 8.355169 AGTGTATTACGAGCCGAAAGAAATATA 58.645 33.333 1.50 0.00 0.00 0.86
835 880 7.208080 AGTGTATTACGAGCCGAAAGAAATAT 58.792 34.615 1.50 0.00 0.00 1.28
836 881 6.567050 AGTGTATTACGAGCCGAAAGAAATA 58.433 36.000 1.50 0.00 0.00 1.40
837 882 5.416947 AGTGTATTACGAGCCGAAAGAAAT 58.583 37.500 1.50 0.00 0.00 2.17
838 883 4.813027 AGTGTATTACGAGCCGAAAGAAA 58.187 39.130 1.50 0.00 0.00 2.52
839 884 4.082625 TGAGTGTATTACGAGCCGAAAGAA 60.083 41.667 1.50 0.00 0.00 2.52
840 885 3.441222 TGAGTGTATTACGAGCCGAAAGA 59.559 43.478 1.50 0.00 0.00 2.52
841 886 3.766151 TGAGTGTATTACGAGCCGAAAG 58.234 45.455 1.50 0.00 0.00 2.62
842 887 3.853831 TGAGTGTATTACGAGCCGAAA 57.146 42.857 1.50 0.00 0.00 3.46
843 888 3.129813 ACATGAGTGTATTACGAGCCGAA 59.870 43.478 0.00 0.00 36.63 4.30
844 889 2.686405 ACATGAGTGTATTACGAGCCGA 59.314 45.455 0.00 0.00 36.63 5.54
845 890 3.079960 ACATGAGTGTATTACGAGCCG 57.920 47.619 0.00 0.00 36.63 5.52
855 900 6.560003 ATGAACTCCCAATACATGAGTGTA 57.440 37.500 0.00 0.00 44.43 2.90
856 901 4.908601 TGAACTCCCAATACATGAGTGT 57.091 40.909 0.00 0.00 39.22 3.55
857 902 6.405065 CCAAATGAACTCCCAATACATGAGTG 60.405 42.308 0.00 0.00 39.22 3.51
858 903 5.653769 CCAAATGAACTCCCAATACATGAGT 59.346 40.000 0.00 0.00 40.94 3.41
859 904 5.653769 ACCAAATGAACTCCCAATACATGAG 59.346 40.000 0.00 0.00 0.00 2.90
860 905 5.579047 ACCAAATGAACTCCCAATACATGA 58.421 37.500 0.00 0.00 0.00 3.07
861 906 5.920193 ACCAAATGAACTCCCAATACATG 57.080 39.130 0.00 0.00 0.00 3.21
862 907 9.881773 ATATAACCAAATGAACTCCCAATACAT 57.118 29.630 0.00 0.00 0.00 2.29
913 958 8.620533 AGAGAGCGCAATTTGAAATTTATAAC 57.379 30.769 11.47 0.00 0.00 1.89
917 962 6.363088 CACAAGAGAGCGCAATTTGAAATTTA 59.637 34.615 11.47 0.00 0.00 1.40
918 963 5.176223 CACAAGAGAGCGCAATTTGAAATTT 59.824 36.000 11.47 0.00 0.00 1.82
932 977 0.603975 AACCGGAAGCACAAGAGAGC 60.604 55.000 9.46 0.00 0.00 4.09
1698 1759 0.755698 CCGCTCCTTAGCCTAGGTCA 60.756 60.000 11.31 0.00 46.68 4.02
1703 1764 1.735376 CGCTTCCGCTCCTTAGCCTA 61.735 60.000 0.00 0.00 46.68 3.93
1942 2003 1.292223 CACCTCGTCGACCCAATGT 59.708 57.895 10.58 0.00 0.00 2.71
2260 2323 3.297830 AAATTTTGCTGCGGTAACCTC 57.702 42.857 0.00 0.00 0.00 3.85
2268 2331 4.622313 TCAAGCAGATAAAATTTTGCTGCG 59.378 37.500 32.07 25.26 45.47 5.18
2290 2353 7.435192 ACAATCAAAGAATTCAAACGAAGGTTC 59.565 33.333 8.44 0.00 34.62 3.62
2306 2369 6.348786 GCTATTGAAGTCTGCACAATCAAAGA 60.349 38.462 3.02 0.00 35.48 2.52
2307 2370 5.798934 GCTATTGAAGTCTGCACAATCAAAG 59.201 40.000 3.02 0.00 35.48 2.77
2322 2385 6.018589 TGTATCTCATCCTCGCTATTGAAG 57.981 41.667 0.00 0.00 0.00 3.02
2476 2539 1.534595 CAAGGTTCTCTCTGCACAAGC 59.465 52.381 0.00 0.00 42.57 4.01
2508 2571 3.931578 ACTGCTTGGTGAGAGAATGTAC 58.068 45.455 0.00 0.00 0.00 2.90
2584 2647 7.757173 CACACTATGCATAGCTTAGATTATCGT 59.243 37.037 29.60 7.06 38.16 3.73
2640 2703 4.923281 TGTCGTGTTCATCATAGTTGAGTG 59.077 41.667 0.00 0.00 34.73 3.51
2645 2708 5.582269 CAGGAATGTCGTGTTCATCATAGTT 59.418 40.000 0.00 0.00 0.00 2.24
2668 2731 2.722094 GGATCAATACACACCAAGGCA 58.278 47.619 0.00 0.00 0.00 4.75
2772 2835 9.480053 ACAAATGAAATGTAGAAGGTTGAATTG 57.520 29.630 0.00 0.00 0.00 2.32
2779 2842 5.769662 TCAGCACAAATGAAATGTAGAAGGT 59.230 36.000 0.00 0.00 0.00 3.50
2836 2899 1.818642 ATCCTGCACTCTTTGAGCAC 58.181 50.000 0.00 0.00 37.35 4.40
2847 2910 3.728845 ACGACCACATTATATCCTGCAC 58.271 45.455 0.00 0.00 0.00 4.57
2858 2921 6.582677 TCCATTATTTCAAACGACCACATT 57.417 33.333 0.00 0.00 0.00 2.71
2866 2929 9.030301 GTCCCATAAATTCCATTATTTCAAACG 57.970 33.333 0.00 0.00 0.00 3.60
2880 2943 3.513515 TGGCCTTTGTGTCCCATAAATTC 59.486 43.478 3.32 0.00 0.00 2.17
2990 3053 1.243342 TGTAAGGTGTGCCTGCATGC 61.243 55.000 11.82 11.82 46.33 4.06
2993 3056 0.110295 ACATGTAAGGTGTGCCTGCA 59.890 50.000 0.00 0.00 46.33 4.41
3038 3101 2.957680 TGCCATGTCAACACACTGAAAT 59.042 40.909 0.00 0.00 34.48 2.17
3146 3210 0.533951 CAGAAATGCAGGGAAAGGCC 59.466 55.000 0.00 0.00 0.00 5.19
3156 3220 1.588824 CGGCCTCTTGCAGAAATGCA 61.589 55.000 0.00 0.00 43.89 3.96
3180 3244 5.688807 CCTAGATTCCATGTCATTGGTCTT 58.311 41.667 0.00 0.00 38.01 3.01
3190 3254 5.263599 TGATTTGTTGCCTAGATTCCATGT 58.736 37.500 0.00 0.00 0.00 3.21
3322 3386 4.207955 AGATTCTGGATCACGCTACAGTA 58.792 43.478 0.00 0.00 37.22 2.74
3523 3587 7.148639 CCTTTTCGACGATAGAATGTTCTTCAA 60.149 37.037 0.00 0.00 38.70 2.69
3710 3774 3.582647 TCAGACCATCACCTTGTGTGTAT 59.417 43.478 0.00 0.00 45.61 2.29
3747 3811 1.179152 TCGATCAGGCGTAAGGTTGA 58.821 50.000 0.00 0.00 38.28 3.18
3764 3828 5.693555 TCTTTCGATGAGATGATGGATTTCG 59.306 40.000 0.00 0.00 0.00 3.46
3765 3829 6.346439 CGTCTTTCGATGAGATGATGGATTTC 60.346 42.308 11.24 0.00 42.86 2.17
3766 3830 5.464722 CGTCTTTCGATGAGATGATGGATTT 59.535 40.000 11.24 0.00 42.86 2.17
3767 3831 4.987285 CGTCTTTCGATGAGATGATGGATT 59.013 41.667 11.24 0.00 42.86 3.01
3768 3832 4.554292 CGTCTTTCGATGAGATGATGGAT 58.446 43.478 11.24 0.00 42.86 3.41
3769 3833 3.243535 CCGTCTTTCGATGAGATGATGGA 60.244 47.826 16.11 0.00 39.30 3.41
3770 3834 3.055591 CCGTCTTTCGATGAGATGATGG 58.944 50.000 16.11 7.16 42.86 3.51
3771 3835 3.055591 CCCGTCTTTCGATGAGATGATG 58.944 50.000 16.11 6.78 42.86 3.07
3772 3836 2.959030 TCCCGTCTTTCGATGAGATGAT 59.041 45.455 16.11 0.00 42.86 2.45
3773 3837 2.375146 TCCCGTCTTTCGATGAGATGA 58.625 47.619 16.11 6.25 42.86 2.92
3774 3838 2.860735 GTTCCCGTCTTTCGATGAGATG 59.139 50.000 10.18 10.18 42.86 2.90
3775 3839 2.159085 GGTTCCCGTCTTTCGATGAGAT 60.159 50.000 2.78 0.00 42.86 2.75
3776 3840 1.203994 GGTTCCCGTCTTTCGATGAGA 59.796 52.381 0.00 0.00 42.86 3.27
3777 3841 1.204941 AGGTTCCCGTCTTTCGATGAG 59.795 52.381 0.00 0.00 42.86 2.90
3778 3842 1.203994 GAGGTTCCCGTCTTTCGATGA 59.796 52.381 0.00 0.00 42.86 2.92
3779 3843 1.641577 GAGGTTCCCGTCTTTCGATG 58.358 55.000 0.00 0.00 42.86 3.84
3780 3844 0.535797 GGAGGTTCCCGTCTTTCGAT 59.464 55.000 0.00 0.00 42.86 3.59
3781 3845 1.870055 CGGAGGTTCCCGTCTTTCGA 61.870 60.000 0.00 0.00 44.23 3.71
3782 3846 1.445582 CGGAGGTTCCCGTCTTTCG 60.446 63.158 0.00 0.00 44.23 3.46
3783 3847 4.592426 CGGAGGTTCCCGTCTTTC 57.408 61.111 0.00 0.00 44.23 2.62
3790 3854 0.759436 TGATAGAGGCGGAGGTTCCC 60.759 60.000 0.00 0.00 31.13 3.97
3791 3855 0.676736 CTGATAGAGGCGGAGGTTCC 59.323 60.000 0.00 0.00 0.00 3.62
3792 3856 1.693627 TCTGATAGAGGCGGAGGTTC 58.306 55.000 0.00 0.00 0.00 3.62
3793 3857 2.390225 ATCTGATAGAGGCGGAGGTT 57.610 50.000 0.00 0.00 0.00 3.50
3794 3858 2.390225 AATCTGATAGAGGCGGAGGT 57.610 50.000 0.00 0.00 0.00 3.85
3795 3859 2.896685 AGAAATCTGATAGAGGCGGAGG 59.103 50.000 0.00 0.00 0.00 4.30
3796 3860 3.305950 CCAGAAATCTGATAGAGGCGGAG 60.306 52.174 11.94 0.00 46.59 4.63
3797 3861 2.630098 CCAGAAATCTGATAGAGGCGGA 59.370 50.000 11.94 0.00 46.59 5.54
3798 3862 2.869636 GCCAGAAATCTGATAGAGGCGG 60.870 54.545 11.94 0.00 46.59 6.13
3799 3863 2.224137 TGCCAGAAATCTGATAGAGGCG 60.224 50.000 11.94 0.00 46.59 5.52
3800 3864 3.482156 TGCCAGAAATCTGATAGAGGC 57.518 47.619 11.94 13.24 46.59 4.70
3801 3865 3.752222 GCATGCCAGAAATCTGATAGAGG 59.248 47.826 6.36 0.00 46.59 3.69
3802 3866 4.386711 TGCATGCCAGAAATCTGATAGAG 58.613 43.478 16.68 0.00 46.59 2.43
3803 3867 4.426736 TGCATGCCAGAAATCTGATAGA 57.573 40.909 16.68 0.00 46.59 1.98
3804 3868 4.579340 ACTTGCATGCCAGAAATCTGATAG 59.421 41.667 24.43 2.08 46.59 2.08
3805 3869 4.529897 ACTTGCATGCCAGAAATCTGATA 58.470 39.130 24.43 1.06 46.59 2.15
3806 3870 3.362706 ACTTGCATGCCAGAAATCTGAT 58.637 40.909 24.43 0.00 46.59 2.90
3807 3871 2.799017 ACTTGCATGCCAGAAATCTGA 58.201 42.857 24.43 0.00 46.59 3.27
3877 3943 2.185310 GAGCCTGGGATTGTGGTCGT 62.185 60.000 0.00 0.00 0.00 4.34
3931 3997 1.899814 ACTACCAGATCGTTGGAGCAA 59.100 47.619 7.95 0.00 40.87 3.91
3941 4007 7.069578 TGACCCTGAGTAAAATACTACCAGATC 59.930 40.741 7.45 0.00 39.59 2.75
4011 4077 5.643421 ACTTTCTCCCAGAGCATATCATT 57.357 39.130 0.00 0.00 0.00 2.57
4175 4257 9.965824 AAGTATTTCAAGTTATTTTGTGGACAG 57.034 29.630 0.00 0.00 0.00 3.51
4191 4273 7.441890 TTTTGATACGCAGGAAGTATTTCAA 57.558 32.000 0.03 0.00 35.19 2.69
4415 4497 0.519519 TTGCGTTTACTCGGCATTGG 59.480 50.000 0.00 0.00 0.00 3.16
4418 4500 2.029970 CGTATTTGCGTTTACTCGGCAT 59.970 45.455 0.00 0.00 0.00 4.40
4422 4504 2.773036 TGCGTATTTGCGTTTACTCG 57.227 45.000 0.00 0.00 37.81 4.18
4456 4538 5.467399 CACAGACACATGAATGCCAAAATTT 59.533 36.000 0.00 0.00 0.00 1.82
5009 5091 8.695284 CATATTTTTGCGACTCATAGACTAGTC 58.305 37.037 15.41 15.41 39.00 2.59
5010 5092 7.653713 CCATATTTTTGCGACTCATAGACTAGT 59.346 37.037 0.00 0.00 0.00 2.57
5011 5093 7.653713 ACCATATTTTTGCGACTCATAGACTAG 59.346 37.037 0.00 0.00 0.00 2.57
5012 5094 7.497595 ACCATATTTTTGCGACTCATAGACTA 58.502 34.615 0.00 0.00 0.00 2.59
5013 5095 6.349300 ACCATATTTTTGCGACTCATAGACT 58.651 36.000 0.00 0.00 0.00 3.24
5014 5096 6.562270 CGACCATATTTTTGCGACTCATAGAC 60.562 42.308 0.00 0.00 0.00 2.59
5015 5097 5.462068 CGACCATATTTTTGCGACTCATAGA 59.538 40.000 0.00 0.00 0.00 1.98
5016 5098 5.462068 TCGACCATATTTTTGCGACTCATAG 59.538 40.000 0.00 0.00 0.00 2.23
5017 5099 5.233476 GTCGACCATATTTTTGCGACTCATA 59.767 40.000 3.51 0.00 43.18 2.15
5018 5100 4.034048 GTCGACCATATTTTTGCGACTCAT 59.966 41.667 3.51 0.00 43.18 2.90
5019 5101 3.369756 GTCGACCATATTTTTGCGACTCA 59.630 43.478 3.51 0.00 43.18 3.41
5020 5102 3.924610 GTCGACCATATTTTTGCGACTC 58.075 45.455 3.51 0.00 43.18 3.36
5022 5104 3.369756 TGAGTCGACCATATTTTTGCGAC 59.630 43.478 13.01 0.00 45.83 5.19
5023 5105 3.591023 TGAGTCGACCATATTTTTGCGA 58.409 40.909 13.01 0.00 0.00 5.10
5024 5106 3.785505 GCTGAGTCGACCATATTTTTGCG 60.786 47.826 13.01 0.00 0.00 4.85
5025 5107 3.375299 AGCTGAGTCGACCATATTTTTGC 59.625 43.478 13.01 7.80 0.00 3.68
5026 5108 5.551760 AAGCTGAGTCGACCATATTTTTG 57.448 39.130 13.01 0.00 0.00 2.44
5027 5109 6.313905 CACTAAGCTGAGTCGACCATATTTTT 59.686 38.462 13.01 1.53 0.00 1.94
5028 5110 5.812642 CACTAAGCTGAGTCGACCATATTTT 59.187 40.000 13.01 3.16 0.00 1.82
5029 5111 5.105310 ACACTAAGCTGAGTCGACCATATTT 60.105 40.000 13.01 4.77 0.00 1.40
5030 5112 4.402793 ACACTAAGCTGAGTCGACCATATT 59.597 41.667 13.01 9.73 0.00 1.28
5031 5113 3.954904 ACACTAAGCTGAGTCGACCATAT 59.045 43.478 13.01 0.00 0.00 1.78
5032 5114 3.353557 ACACTAAGCTGAGTCGACCATA 58.646 45.455 13.01 0.00 0.00 2.74
5033 5115 2.164624 GACACTAAGCTGAGTCGACCAT 59.835 50.000 13.01 0.00 0.00 3.55
5034 5116 1.540267 GACACTAAGCTGAGTCGACCA 59.460 52.381 13.01 9.18 0.00 4.02
5035 5117 2.265647 GACACTAAGCTGAGTCGACC 57.734 55.000 13.01 4.42 0.00 4.79
5039 5121 2.474856 CGAGTCGACACTAAGCTGAGTC 60.475 54.545 19.50 0.00 30.63 3.36
5040 5122 1.465387 CGAGTCGACACTAAGCTGAGT 59.535 52.381 19.50 0.00 30.63 3.41
5041 5123 1.792273 GCGAGTCGACACTAAGCTGAG 60.792 57.143 18.61 0.00 34.91 3.35
5042 5124 0.168348 GCGAGTCGACACTAAGCTGA 59.832 55.000 18.61 0.00 34.91 4.26
5043 5125 1.128724 CGCGAGTCGACACTAAGCTG 61.129 60.000 18.61 7.91 41.67 4.24
5044 5126 1.134901 CGCGAGTCGACACTAAGCT 59.865 57.895 18.61 0.00 41.67 3.74
5045 5127 1.134075 TCGCGAGTCGACACTAAGC 59.866 57.895 18.61 13.51 43.16 3.09
5053 5135 1.352882 GACTCAGAGTCGCGAGTCGA 61.353 60.000 32.03 28.39 46.20 4.20
5054 5136 1.059681 GACTCAGAGTCGCGAGTCG 59.940 63.158 32.03 26.38 46.20 4.18
5062 5144 1.325338 GACTAGTCGCGACTCAGAGTC 59.675 57.143 42.28 38.54 42.54 3.36
5063 5145 1.337917 TGACTAGTCGCGACTCAGAGT 60.338 52.381 42.28 36.76 42.54 3.24
5064 5146 1.061421 GTGACTAGTCGCGACTCAGAG 59.939 57.143 42.28 34.04 42.54 3.35
5065 5147 1.077123 GTGACTAGTCGCGACTCAGA 58.923 55.000 42.28 25.68 42.54 3.27
5066 5148 0.796927 TGTGACTAGTCGCGACTCAG 59.203 55.000 42.28 33.82 42.66 3.35
5067 5149 1.069432 GTTGTGACTAGTCGCGACTCA 60.069 52.381 42.28 31.02 46.04 3.41
5068 5150 1.604396 GTTGTGACTAGTCGCGACTC 58.396 55.000 42.28 28.88 46.04 3.36
5069 5151 0.110328 CGTTGTGACTAGTCGCGACT 60.110 55.000 40.17 40.17 46.87 4.18
5070 5152 1.662845 GCGTTGTGACTAGTCGCGAC 61.663 60.000 33.40 33.40 46.06 5.19
5071 5153 1.441515 GCGTTGTGACTAGTCGCGA 60.442 57.895 26.76 23.69 42.66 5.87
5072 5154 3.061674 GCGTTGTGACTAGTCGCG 58.938 61.111 26.76 22.04 42.66 5.87
5073 5155 1.344942 CCTGCGTTGTGACTAGTCGC 61.345 60.000 26.18 26.18 45.70 5.19
5074 5156 1.344942 GCCTGCGTTGTGACTAGTCG 61.345 60.000 17.85 7.44 0.00 4.18
5075 5157 0.038159 AGCCTGCGTTGTGACTAGTC 60.038 55.000 16.32 16.32 0.00 2.59
5076 5158 0.038159 GAGCCTGCGTTGTGACTAGT 60.038 55.000 0.00 0.00 0.00 2.57
5077 5159 1.073216 CGAGCCTGCGTTGTGACTAG 61.073 60.000 0.00 0.00 0.00 2.57
5078 5160 1.080772 CGAGCCTGCGTTGTGACTA 60.081 57.895 0.00 0.00 0.00 2.59
5079 5161 2.356313 CGAGCCTGCGTTGTGACT 60.356 61.111 0.00 0.00 0.00 3.41
5080 5162 2.355837 TCGAGCCTGCGTTGTGAC 60.356 61.111 0.00 0.00 0.00 3.67
5081 5163 2.355837 GTCGAGCCTGCGTTGTGA 60.356 61.111 0.00 0.00 0.00 3.58
5082 5164 1.891060 GAAGTCGAGCCTGCGTTGTG 61.891 60.000 0.00 0.00 0.00 3.33
5083 5165 1.664965 GAAGTCGAGCCTGCGTTGT 60.665 57.895 0.00 0.00 0.00 3.32
5084 5166 0.946221 AAGAAGTCGAGCCTGCGTTG 60.946 55.000 0.00 0.00 0.00 4.10
5085 5167 0.667792 GAAGAAGTCGAGCCTGCGTT 60.668 55.000 0.00 0.00 0.00 4.84
5086 5168 1.080434 GAAGAAGTCGAGCCTGCGT 60.080 57.895 0.00 0.00 0.00 5.24
5087 5169 1.807573 GGAAGAAGTCGAGCCTGCG 60.808 63.158 0.00 0.00 0.00 5.18
5088 5170 1.807573 CGGAAGAAGTCGAGCCTGC 60.808 63.158 0.00 0.00 0.00 4.85
5089 5171 0.179150 CTCGGAAGAAGTCGAGCCTG 60.179 60.000 0.00 0.00 44.68 4.85
5090 5172 2.185238 CTCGGAAGAAGTCGAGCCT 58.815 57.895 0.00 0.00 44.68 4.58
5091 5173 4.796225 CTCGGAAGAAGTCGAGCC 57.204 61.111 0.00 0.00 44.68 4.70
5096 5178 1.073768 GCAGCGACTCGGAAGAAGTC 61.074 60.000 0.00 0.00 41.32 3.01
5097 5179 1.080434 GCAGCGACTCGGAAGAAGT 60.080 57.895 0.00 0.00 41.32 3.01
5098 5180 1.807573 GGCAGCGACTCGGAAGAAG 60.808 63.158 0.00 0.00 41.32 2.85
5099 5181 2.261671 GGCAGCGACTCGGAAGAA 59.738 61.111 0.00 0.00 41.32 2.52
5100 5182 3.760035 GGGCAGCGACTCGGAAGA 61.760 66.667 0.00 0.00 39.12 2.87
5101 5183 4.821589 GGGGCAGCGACTCGGAAG 62.822 72.222 0.00 0.00 0.00 3.46
5105 5187 4.504916 CTCTGGGGCAGCGACTCG 62.505 72.222 0.00 0.00 0.00 4.18
5106 5188 4.828925 GCTCTGGGGCAGCGACTC 62.829 72.222 0.00 0.00 0.00 3.36
5111 5193 4.828925 GAGTCGCTCTGGGGCAGC 62.829 72.222 0.00 0.00 0.00 5.25
5112 5194 4.504916 CGAGTCGCTCTGGGGCAG 62.505 72.222 0.00 0.00 0.00 4.85
5134 5216 1.531149 CATGGTTTTTGAGTCGCGACT 59.469 47.619 39.89 39.89 45.84 4.18
5135 5217 1.529438 TCATGGTTTTTGAGTCGCGAC 59.471 47.619 31.30 31.30 0.00 5.19
5136 5218 1.872388 TCATGGTTTTTGAGTCGCGA 58.128 45.000 3.71 3.71 0.00 5.87
5137 5219 2.900122 ATCATGGTTTTTGAGTCGCG 57.100 45.000 0.00 0.00 0.00 5.87
5138 5220 5.516339 CCAATAATCATGGTTTTTGAGTCGC 59.484 40.000 19.69 0.00 33.08 5.19
5139 5221 6.035843 CCCAATAATCATGGTTTTTGAGTCG 58.964 40.000 19.69 6.28 36.14 4.18
5140 5222 6.813152 CACCCAATAATCATGGTTTTTGAGTC 59.187 38.462 19.69 0.00 36.14 3.36
5141 5223 6.496565 TCACCCAATAATCATGGTTTTTGAGT 59.503 34.615 19.69 12.08 36.14 3.41
5142 5224 6.934056 TCACCCAATAATCATGGTTTTTGAG 58.066 36.000 19.69 11.50 36.14 3.02
5143 5225 6.924913 TCACCCAATAATCATGGTTTTTGA 57.075 33.333 19.69 1.26 36.14 2.69
5144 5226 7.385267 TCTTCACCCAATAATCATGGTTTTTG 58.615 34.615 13.22 13.22 36.14 2.44
5145 5227 7.552050 TCTTCACCCAATAATCATGGTTTTT 57.448 32.000 0.00 0.00 36.14 1.94
5146 5228 7.552050 TTCTTCACCCAATAATCATGGTTTT 57.448 32.000 0.00 0.00 36.14 2.43
5147 5229 7.738437 ATTCTTCACCCAATAATCATGGTTT 57.262 32.000 0.00 0.00 36.14 3.27
5148 5230 8.061304 ACTATTCTTCACCCAATAATCATGGTT 58.939 33.333 0.00 0.00 36.14 3.67
5149 5231 7.586349 ACTATTCTTCACCCAATAATCATGGT 58.414 34.615 0.00 0.00 36.14 3.55
5150 5232 8.469309 AACTATTCTTCACCCAATAATCATGG 57.531 34.615 0.00 0.00 37.71 3.66
5151 5233 9.740239 CAAACTATTCTTCACCCAATAATCATG 57.260 33.333 0.00 0.00 0.00 3.07
5152 5234 9.699410 TCAAACTATTCTTCACCCAATAATCAT 57.301 29.630 0.00 0.00 0.00 2.45
5153 5235 9.527157 TTCAAACTATTCTTCACCCAATAATCA 57.473 29.630 0.00 0.00 0.00 2.57
5155 5237 9.753674 TCTTCAAACTATTCTTCACCCAATAAT 57.246 29.630 0.00 0.00 0.00 1.28
5156 5238 9.231297 CTCTTCAAACTATTCTTCACCCAATAA 57.769 33.333 0.00 0.00 0.00 1.40
5157 5239 7.829211 CCTCTTCAAACTATTCTTCACCCAATA 59.171 37.037 0.00 0.00 0.00 1.90
5158 5240 6.660949 CCTCTTCAAACTATTCTTCACCCAAT 59.339 38.462 0.00 0.00 0.00 3.16
5159 5241 6.003950 CCTCTTCAAACTATTCTTCACCCAA 58.996 40.000 0.00 0.00 0.00 4.12
5160 5242 5.560724 CCTCTTCAAACTATTCTTCACCCA 58.439 41.667 0.00 0.00 0.00 4.51
5161 5243 4.396478 GCCTCTTCAAACTATTCTTCACCC 59.604 45.833 0.00 0.00 0.00 4.61
5162 5244 5.249420 AGCCTCTTCAAACTATTCTTCACC 58.751 41.667 0.00 0.00 0.00 4.02
5163 5245 6.314152 GGTAGCCTCTTCAAACTATTCTTCAC 59.686 42.308 0.00 0.00 0.00 3.18
5229 5311 3.715628 AATTAATGGGCAACTGATCGC 57.284 42.857 0.00 0.00 0.00 4.58
5289 5371 5.007921 TGAAAGCTCAAACCCGTTAACTAAC 59.992 40.000 3.71 0.00 0.00 2.34
5314 5396 5.183713 TCAATTAACCAGATTTGACAGCCAG 59.816 40.000 0.00 0.00 0.00 4.85
5362 5444 1.410517 TGAGCAATCCCGCAAAACAAA 59.589 42.857 0.00 0.00 0.00 2.83
5389 5471 3.216187 TGCTAAAAGTTACAGGCACCA 57.784 42.857 0.00 0.00 0.00 4.17
5426 5509 6.942532 TGGACCAATGAAGAATAACATAGC 57.057 37.500 0.00 0.00 0.00 2.97
5462 5545 7.445121 ACAGTCTGTGAAGATCAATAAGACAA 58.555 34.615 4.21 0.00 36.68 3.18
5857 5943 6.542005 TCGATTAATTGTATCCTGCAACACAT 59.458 34.615 2.57 0.00 0.00 3.21
5936 6022 5.472478 CCAGGGGTAAGAAAACACTAACTTC 59.528 44.000 0.00 0.00 0.00 3.01
6042 6128 1.282157 CTAGCCTACCCCAGCTTGTTT 59.718 52.381 0.00 0.00 40.56 2.83
6049 6135 2.160721 TCAACTCTAGCCTACCCCAG 57.839 55.000 0.00 0.00 0.00 4.45
6089 6175 2.679837 CACATGCCAGAACCATGACTAC 59.320 50.000 8.22 0.00 41.97 2.73
6166 6252 4.081198 AGTGCATAAAGAGAGACCTGAAGG 60.081 45.833 0.00 0.00 42.17 3.46
6186 6272 2.816087 CAAACTTGACATGGGAGGAGTG 59.184 50.000 0.00 0.00 0.00 3.51
6268 6357 7.148771 CGCAATTTCTTTAAATCAAGTGATGCA 60.149 33.333 9.81 0.00 34.12 3.96
6315 6404 5.617751 GCTGCCAACTAAAACACAGTATCTG 60.618 44.000 0.00 0.00 37.52 2.90
6541 6634 3.056304 GCGTGCCTTCAGAATAGATCTC 58.944 50.000 0.00 0.00 35.73 2.75
6662 6755 1.201429 TCCAGGTCCAGCTTTCCCTC 61.201 60.000 0.00 0.00 0.00 4.30
6998 7091 7.622256 GCAGTAAATACACACTCACAAGATGAC 60.622 40.741 0.00 0.00 32.37 3.06
7165 7258 1.872952 TGTGAAGTGAAAGATGCCACG 59.127 47.619 0.00 0.00 38.26 4.94
7172 7265 1.668751 GCAACGGTGTGAAGTGAAAGA 59.331 47.619 0.66 0.00 0.00 2.52
7217 7310 7.352739 ACTAAAAACTGTATTTGCAAGTCTCG 58.647 34.615 0.00 0.00 0.00 4.04
7322 7580 4.426704 ACACAAGGGTACAGGAGTAAGAT 58.573 43.478 0.00 0.00 30.67 2.40
7438 7697 4.643387 AACAGCGCCCACTCCACC 62.643 66.667 2.29 0.00 0.00 4.61
7442 7701 2.031163 AGACAACAGCGCCCACTC 59.969 61.111 2.29 0.00 0.00 3.51
7477 7736 5.827797 ACAACTAGAAATGAAGCAAGGAACA 59.172 36.000 0.00 0.00 0.00 3.18
7606 7865 1.338105 CGGCCACAAGAAGTCTGATCA 60.338 52.381 2.24 0.00 0.00 2.92
7681 7940 1.429463 GCGATCGCAATAGTAAGGGG 58.571 55.000 33.89 0.00 41.49 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.