AutoCloner

Multiple sequence alignment - TraesCS7B01G173200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G173200	chr7B	100.000	3225	0	0	1	3225	244715762	244718986	0.000000e+00	5956.0
1	TraesCS7B01G173200	chr7B	97.042	1758	37	6	210	1966	244692497	244694240	0.000000e+00	2944.0
2	TraesCS7B01G173200	chr7B	96.490	1567	50	4	406	1968	244644891	244646456	0.000000e+00	2584.0
3	TraesCS7B01G173200	chr7B	95.500	1200	54	0	767	1966	244651643	244652842	0.000000e+00	1917.0
4	TraesCS7B01G173200	chr7B	81.727	695	82	27	22	694	244650957	244651628	3.660000e-149	538.0
5	TraesCS7B01G173200	chr7B	97.260	219	6	0	1	219	244692252	244692470	3.930000e-99	372.0
6	TraesCS7B01G173200	chr7B	94.472	199	10	1	210	408	244644409	244644606	4.040000e-79	305.0
7	TraesCS7B01G173200	chr7B	80.921	152	27	2	3070	3219	261196885	261197036	5.650000e-23	119.0
8	TraesCS7B01G173200	chr7B	84.466	103	13	3	2541	2643	114411760	114411661	7.360000e-17	99.0
9	TraesCS7B01G173200	chr7D	98.045	2097	40	1	210	2305	264370360	264372456	0.000000e+00	3644.0
10	TraesCS7B01G173200	chr7D	96.595	1762	50	4	210	1966	264360492	264362248	0.000000e+00	2913.0
11	TraesCS7B01G173200	chr7D	95.983	1444	55	3	521	1963	264338738	264340179	0.000000e+00	2342.0
12	TraesCS7B01G173200	chr7D	92.885	1518	87	17	460	1966	264325902	264327409	0.000000e+00	2185.0
13	TraesCS7B01G173200	chr7D	96.831	789	22	3	2438	3225	264376378	264377164	0.000000e+00	1315.0
14	TraesCS7B01G173200	chr7D	93.662	284	18	0	210	493	264338457	264338740	2.970000e-115	425.0
15	TraesCS7B01G173200	chr7D	94.977	219	8	1	1	219	264370118	264370333	1.110000e-89	340.0
16	TraesCS7B01G173200	chr7D	92.929	198	14	0	22	219	264360268	264360465	4.070000e-74	289.0
17	TraesCS7B01G173200	chr7D	92.929	198	11	1	22	219	264338236	264338430	5.270000e-73	285.0
18	TraesCS7B01G173200	chr7D	78.571	448	46	22	22	454	264325363	264325775	1.920000e-62	250.0
19	TraesCS7B01G173200	chr7D	95.833	144	5	1	2292	2434	264376270	264376413	6.960000e-57	231.0
20	TraesCS7B01G173200	chr7D	81.457	151	26	2	3072	3220	263966179	263966029	4.370000e-24	122.0
21	TraesCS7B01G173200	chr7A	92.072	1501	93	23	488	1966	287889479	287890975	0.000000e+00	2089.0
22	TraesCS7B01G173200	chr7A	95.143	700	32	2	1271	1969	287862649	287863347	0.000000e+00	1103.0
23	TraesCS7B01G173200	chr7A	80.761	447	46	19	1	430	287889050	287889473	2.420000e-81	313.0
24	TraesCS7B01G173200	chr7A	80.921	152	27	2	3070	3219	309459845	309459996	5.650000e-23	119.0
25	TraesCS7B01G173200	chr1D	89.423	104	6	4	2540	2642	19304553	19304454	3.380000e-25	126.0
26	TraesCS7B01G173200	chr4B	87.379	103	7	4	2541	2643	534405818	534405914	2.630000e-21	113.0
27	TraesCS7B01G173200	chr3A	86.364	88	8	4	2535	2621	705229831	705229915	3.430000e-15	93.5
28	TraesCS7B01G173200	chr3A	87.654	81	8	2	2541	2621	713220997	713220919	3.430000e-15	93.5
29	TraesCS7B01G173200	chr6A	83.673	98	13	3	2545	2642	524309530	524309624	4.430000e-14	89.8
30	TraesCS7B01G173200	chrUn	87.013	77	9	1	2541	2617	124835898	124835823	5.730000e-13	86.1
31	TraesCS7B01G173200	chr1A	85.915	71	5	4	2553	2622	373822448	373822514	1.610000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G173200	chr7B	244715762	244718986	3224	False	5956.000000	5956	100.000000	1	3225	1	chr7B.!!$F1	3224
1	TraesCS7B01G173200	chr7B	244692252	244694240	1988	False	1658.000000	2944	97.151000	1	1966	2	chr7B.!!$F5	1965
2	TraesCS7B01G173200	chr7B	244644409	244646456	2047	False	1444.500000	2584	95.481000	210	1968	2	chr7B.!!$F3	1758
3	TraesCS7B01G173200	chr7B	244650957	244652842	1885	False	1227.500000	1917	88.613500	22	1966	2	chr7B.!!$F4	1944
4	TraesCS7B01G173200	chr7D	264360268	264362248	1980	False	1601.000000	2913	94.762000	22	1966	2	chr7D.!!$F3	1944
5	TraesCS7B01G173200	chr7D	264370118	264377164	7046	False	1382.500000	3644	96.421500	1	3225	4	chr7D.!!$F4	3224
6	TraesCS7B01G173200	chr7D	264325363	264327409	2046	False	1217.500000	2185	85.728000	22	1966	2	chr7D.!!$F1	1944
7	TraesCS7B01G173200	chr7D	264338236	264340179	1943	False	1017.333333	2342	94.191333	22	1963	3	chr7D.!!$F2	1941
8	TraesCS7B01G173200	chr7A	287889050	287890975	1925	False	1201.000000	2089	86.416500	1	1966	2	chr7A.!!$F3	1965
9	TraesCS7B01G173200	chr7A	287862649	287863347	698	False	1103.000000	1103	95.143000	1271	1969	1	chr7A.!!$F1	698

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
613	1073	1.331214	CAACACTCCAAGTTGGCCAT	58.669	50.0	17.68	1.74	41.92	4.40	F
1543	2030	0.326264	GGATGGTCAGGCTGTTGAGT	59.674	55.0	15.27	0.00	0.00	3.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1799	2286	0.244994	ACGGTGCAAGAGTAGCAGAG	59.755	55.0	0.0	0.0	43.63	3.35	R
2398	6715	0.610174	GGATGTGTCCAGACTCTGCA	59.390	55.0	0.0	0.0	44.42	4.41	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	37	2.270527	GCTGAGAAGGAGGGTGGC	59.729	66.667	0.00	0.00	0.00	5.01
84	93	1.737029	CGATGCTTCAGTCATCCACGT	60.737	52.381	0.08	0.00	37.60	4.49
157	166	4.061596	GTCTCCAAGAAGTTCCACAAGAG	58.938	47.826	0.00	0.01	0.00	2.85
262	308	8.662781	TCTAAGCTTGTACATGGATGATAAAC	57.337	34.615	9.86	0.00	0.00	2.01
613	1073	1.331214	CAACACTCCAAGTTGGCCAT	58.669	50.000	17.68	1.74	41.92	4.40
921	1408	2.547211	GGAGATGAGTTGGCATGATTCG	59.453	50.000	0.00	0.00	0.00	3.34
1091	1578	2.886523	GCAACAGATATGGCTTGCCATA	59.113	45.455	29.35	29.35	37.13	2.74
1109	1596	9.113838	CTTGCCATATTAGATCAGTTAGTTTGT	57.886	33.333	0.00	0.00	0.00	2.83
1213	1700	5.523588	ACTATCTCTGATGGTTTGAGGAGA	58.476	41.667	0.00	0.00	34.91	3.71
1232	1719	2.425312	AGACTTGGAGACATCTACAGCG	59.575	50.000	0.00	0.00	38.22	5.18
1437	1924	1.261619	CACCGCTGTTCAAGTCAAGAC	59.738	52.381	0.00	0.00	0.00	3.01
1543	2030	0.326264	GGATGGTCAGGCTGTTGAGT	59.674	55.000	15.27	0.00	0.00	3.41
1799	2286	8.172352	TCTTAGCTCATAGATACTCTTCAACC	57.828	38.462	0.00	0.00	0.00	3.77
1879	2368	9.684448	CTTTCTCAGTGTGTGTATATATGTAGG	57.316	37.037	0.00	0.00	0.00	3.18
2044	2533	4.690748	CACGGTTCAAGATGTAGAATGTGT	59.309	41.667	0.00	0.00	32.78	3.72
2105	2594	7.444487	TCTCCCTTTTCTTAACTTTAAGCAGTC	59.556	37.037	4.15	0.00	39.90	3.51
2142	2631	8.899427	TCTTCCTTCTCTTAATTCTATGCATG	57.101	34.615	10.16	0.00	0.00	4.06
2192	2681	3.421844	ACTAGCAGCCAACTTTTAAGGG	58.578	45.455	0.00	0.00	0.00	3.95
2210	2699	4.806640	AGGGTCAGCCATGTAAATTTTG	57.193	40.909	0.00	0.00	36.17	2.44
2234	2723	5.691754	GCACTGGCTAATAAATGCATTTACC	59.308	40.000	29.32	24.84	34.62	2.85
2398	6715	0.038744	AGTTGGCTAGCTGCATGGTT	59.961	50.000	15.72	0.00	45.15	3.67
2399	6716	0.171903	GTTGGCTAGCTGCATGGTTG	59.828	55.000	15.72	0.00	45.15	3.77
2410	6727	3.942351	CATGGTTGCAGAGTCTGGA	57.058	52.632	21.54	16.58	31.21	3.86
2411	6728	1.446907	CATGGTTGCAGAGTCTGGAC	58.553	55.000	21.54	12.77	30.08	4.02
2412	6729	1.059098	ATGGTTGCAGAGTCTGGACA	58.941	50.000	21.54	14.01	30.08	4.02
2413	6730	0.106708	TGGTTGCAGAGTCTGGACAC	59.893	55.000	21.54	17.24	30.08	3.67
2414	6731	0.106708	GGTTGCAGAGTCTGGACACA	59.893	55.000	21.54	8.09	30.08	3.72
2415	6732	1.271054	GGTTGCAGAGTCTGGACACAT	60.271	52.381	21.54	0.00	30.08	3.21
2416	6733	2.072298	GTTGCAGAGTCTGGACACATC	58.928	52.381	21.54	6.55	30.08	3.06
2417	6734	0.610174	TGCAGAGTCTGGACACATCC	59.390	55.000	21.54	2.94	46.48	3.51
2418	6735	0.901124	GCAGAGTCTGGACACATCCT	59.099	55.000	21.54	0.00	46.43	3.24
2419	6736	1.277557	GCAGAGTCTGGACACATCCTT	59.722	52.381	21.54	0.00	46.43	3.36
2420	6737	2.934364	GCAGAGTCTGGACACATCCTTG	60.934	54.545	21.54	0.00	46.43	3.61
2421	6738	1.277557	AGAGTCTGGACACATCCTTGC	59.722	52.381	0.00	0.00	46.43	4.01
2422	6739	1.002430	GAGTCTGGACACATCCTTGCA	59.998	52.381	3.51	0.00	46.43	4.08
2423	6740	1.160137	GTCTGGACACATCCTTGCAC	58.840	55.000	0.00	0.00	46.43	4.57
2424	6741	1.059098	TCTGGACACATCCTTGCACT	58.941	50.000	0.00	0.00	46.43	4.40
2425	6742	2.028112	GTCTGGACACATCCTTGCACTA	60.028	50.000	0.00	0.00	46.43	2.74
2426	6743	2.637382	TCTGGACACATCCTTGCACTAA	59.363	45.455	0.00	0.00	46.43	2.24
2427	6744	3.072330	TCTGGACACATCCTTGCACTAAA	59.928	43.478	0.00	0.00	46.43	1.85
2428	6745	4.012374	CTGGACACATCCTTGCACTAAAT	58.988	43.478	0.00	0.00	46.43	1.40
2429	6746	4.009675	TGGACACATCCTTGCACTAAATC	58.990	43.478	0.00	0.00	46.43	2.17
2430	6747	4.009675	GGACACATCCTTGCACTAAATCA	58.990	43.478	0.00	0.00	42.45	2.57
2431	6748	4.458989	GGACACATCCTTGCACTAAATCAA	59.541	41.667	0.00	0.00	42.45	2.57
2432	6749	5.376854	ACACATCCTTGCACTAAATCAAC	57.623	39.130	0.00	0.00	0.00	3.18
2433	6750	5.072741	ACACATCCTTGCACTAAATCAACT	58.927	37.500	0.00	0.00	0.00	3.16
2434	6751	5.182001	ACACATCCTTGCACTAAATCAACTC	59.818	40.000	0.00	0.00	0.00	3.01
2435	6752	4.702131	ACATCCTTGCACTAAATCAACTCC	59.298	41.667	0.00	0.00	0.00	3.85
2436	6753	4.365514	TCCTTGCACTAAATCAACTCCA	57.634	40.909	0.00	0.00	0.00	3.86
2456	6773	3.556633	CCATGCAGAGTCTGGACATATCC	60.557	52.174	21.54	2.94	46.48	2.59
2486	6803	7.012327	CACTAAATCAACTTTTCCACTGAGACA	59.988	37.037	0.00	0.00	0.00	3.41
2487	6804	5.757850	AATCAACTTTTCCACTGAGACAC	57.242	39.130	0.00	0.00	0.00	3.67
2499	6816	4.926238	CCACTGAGACACTGTAGCTTTAAG	59.074	45.833	0.00	0.00	0.00	1.85
2503	6820	6.156748	TGAGACACTGTAGCTTTAAGACAA	57.843	37.500	0.00	0.00	0.00	3.18
2533	6850	8.290325	CAGAAGGAAAACTGTAATCTTGGTTAC	58.710	37.037	0.00	0.00	35.60	2.50
2582	6899	1.473965	CGGGTGTAAGCTCATCATGCT	60.474	52.381	0.00	0.00	43.32	3.79
2681	6999	8.034313	ACAAAGGCTATAGAATCATAACTCCA	57.966	34.615	3.21	0.00	0.00	3.86
2704	7022	8.106462	TCCATGTCTCCTCAACAATTTAATACA	58.894	33.333	0.00	0.00	0.00	2.29
2863	7181	2.893637	ACGAACTGATCCATTTCCTCG	58.106	47.619	0.00	0.00	0.00	4.63
2894	7212	7.255451	CCAACAGTACAAGATGCTAAAAGGAAA	60.255	37.037	0.00	0.00	0.00	3.13
2921	7239	6.976934	AAAAAGGAAAAGAGCTATGGTTGA	57.023	33.333	0.00	0.00	0.00	3.18
3042	7360	2.909577	GCATGGCTGCTCCTCTCT	59.090	61.111	0.00	0.00	45.32	3.10
3043	7361	1.524165	GCATGGCTGCTCCTCTCTG	60.524	63.158	0.00	0.00	45.32	3.35
3053	7371	4.392445	GCTGCTCCTCTCTGCATTAATATG	59.608	45.833	0.00	0.00	38.59	1.78
3136	7454	1.580845	GCACAGCAAGTAGGCCACAG	61.581	60.000	5.01	0.00	0.00	3.66
3194	7512	3.118738	GGACATGGTTAGGAGTGTACCTG	60.119	52.174	0.00	0.00	40.81	4.00
3200	7518	4.900652	TGGTTAGGAGTGTACCTGTTGTTA	59.099	41.667	0.00	0.00	40.81	2.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
84	93	3.084039	CAATTTGCTTCAGTAGGAGCCA	58.916	45.455	0.00	0.00	0.00	4.75
157	166	3.149196	TCCTTGTTGCATGGAAGTCTTC	58.851	45.455	0.00	3.80	35.26	2.87
1109	1596	1.902508	CTTGGTGTGAGGCCTAGAAGA	59.097	52.381	4.42	0.00	31.96	2.87
1213	1700	1.134965	GCGCTGTAGATGTCTCCAAGT	60.135	52.381	0.00	0.00	0.00	3.16
1232	1719	1.674962	GCACAGGATCTCTTCAATGGC	59.325	52.381	0.00	0.00	0.00	4.40
1437	1924	0.974010	TAGGCGGGTGTAAGACTGGG	60.974	60.000	0.00	0.00	0.00	4.45
1543	2030	0.636647	TGGTGATCTCCCTAGCCTCA	59.363	55.000	11.24	0.00	0.00	3.86
1799	2286	0.244994	ACGGTGCAAGAGTAGCAGAG	59.755	55.000	0.00	0.00	43.63	3.35
1879	2368	9.817809	TTTCTGTATGGAGTATTCTGTACATTC	57.182	33.333	0.00	0.00	0.00	2.67
2044	2533	6.018262	GGCTCATGCGTAACTTATTTCATGTA	60.018	38.462	0.00	0.00	40.82	2.29
2061	2550	2.615912	GAGAAACTACCATGGCTCATGC	59.384	50.000	13.04	0.00	40.20	4.06
2105	2594	4.006319	GAGAAGGAAGAAACTCCCATGTG	58.994	47.826	0.00	0.00	35.95	3.21
2192	2681	4.386652	CAGTGCAAAATTTACATGGCTGAC	59.613	41.667	0.00	0.00	0.00	3.51
2210	2699	5.691754	GGTAAATGCATTTATTAGCCAGTGC	59.308	40.000	29.36	15.12	35.02	4.40
2234	2723	7.206981	AGAAGGTTTGATGTTGAATACACAG	57.793	36.000	0.00	0.00	40.19	3.66
2398	6715	0.610174	GGATGTGTCCAGACTCTGCA	59.390	55.000	0.00	0.00	44.42	4.41
2399	6716	3.450028	GGATGTGTCCAGACTCTGC	57.550	57.895	0.00	0.00	44.42	4.26
2408	6725	4.009675	TGATTTAGTGCAAGGATGTGTCC	58.990	43.478	0.00	0.00	45.45	4.02
2409	6726	5.182001	AGTTGATTTAGTGCAAGGATGTGTC	59.818	40.000	0.00	0.00	0.00	3.67
2410	6727	5.072741	AGTTGATTTAGTGCAAGGATGTGT	58.927	37.500	0.00	0.00	0.00	3.72
2411	6728	5.392380	GGAGTTGATTTAGTGCAAGGATGTG	60.392	44.000	0.00	0.00	0.00	3.21
2412	6729	4.702131	GGAGTTGATTTAGTGCAAGGATGT	59.298	41.667	0.00	0.00	0.00	3.06
2413	6730	4.701651	TGGAGTTGATTTAGTGCAAGGATG	59.298	41.667	0.00	0.00	0.00	3.51
2414	6731	4.922206	TGGAGTTGATTTAGTGCAAGGAT	58.078	39.130	0.00	0.00	0.00	3.24
2415	6732	4.365514	TGGAGTTGATTTAGTGCAAGGA	57.634	40.909	0.00	0.00	0.00	3.36
2416	6733	4.676196	GCATGGAGTTGATTTAGTGCAAGG	60.676	45.833	0.00	0.00	0.00	3.61
2417	6734	4.082625	TGCATGGAGTTGATTTAGTGCAAG	60.083	41.667	0.00	0.00	38.27	4.01
2418	6735	3.825585	TGCATGGAGTTGATTTAGTGCAA	59.174	39.130	0.00	0.00	38.27	4.08
2419	6736	3.419943	TGCATGGAGTTGATTTAGTGCA	58.580	40.909	0.00	0.00	38.83	4.57
2420	6737	3.691118	TCTGCATGGAGTTGATTTAGTGC	59.309	43.478	14.43	0.00	0.00	4.40
2421	6738	4.940046	ACTCTGCATGGAGTTGATTTAGTG	59.060	41.667	14.43	0.00	43.14	2.74
2422	6739	5.046014	AGACTCTGCATGGAGTTGATTTAGT	60.046	40.000	14.43	8.08	45.32	2.24
2423	6740	5.293814	CAGACTCTGCATGGAGTTGATTTAG	59.706	44.000	14.43	4.79	45.32	1.85
2424	6741	5.181009	CAGACTCTGCATGGAGTTGATTTA	58.819	41.667	14.43	0.00	45.32	1.40
2425	6742	4.008330	CAGACTCTGCATGGAGTTGATTT	58.992	43.478	14.43	0.00	45.32	2.17
2426	6743	3.607741	CAGACTCTGCATGGAGTTGATT	58.392	45.455	14.43	0.00	45.32	2.57
2427	6744	2.093075	CCAGACTCTGCATGGAGTTGAT	60.093	50.000	14.43	0.00	45.32	2.57
2428	6745	1.277273	CCAGACTCTGCATGGAGTTGA	59.723	52.381	14.43	0.00	45.32	3.18
2429	6746	1.277273	TCCAGACTCTGCATGGAGTTG	59.723	52.381	14.43	10.70	45.32	3.16
2430	6747	1.277557	GTCCAGACTCTGCATGGAGTT	59.722	52.381	14.43	2.40	45.32	3.01
2432	6749	0.900421	TGTCCAGACTCTGCATGGAG	59.100	55.000	8.12	8.12	43.61	3.86
2433	6750	1.576577	ATGTCCAGACTCTGCATGGA	58.423	50.000	1.73	1.73	40.80	3.41
2434	6751	3.556633	GGATATGTCCAGACTCTGCATGG	60.557	52.174	3.16	0.00	44.42	3.66
2435	6752	3.661944	GGATATGTCCAGACTCTGCATG	58.338	50.000	3.16	0.00	44.42	4.06
2456	6773	6.418819	CAGTGGAAAAGTTGATTTAGTGCAAG	59.581	38.462	0.00	0.00	0.00	4.01
2486	6803	6.817184	TCTGAAGTTGTCTTAAAGCTACAGT	58.183	36.000	0.00	0.00	33.64	3.55
2487	6804	7.095439	CCTTCTGAAGTTGTCTTAAAGCTACAG	60.095	40.741	15.72	0.00	33.64	2.74
2499	6816	5.819825	ACAGTTTTCCTTCTGAAGTTGTC	57.180	39.130	15.72	3.44	33.63	3.18
2503	6820	7.229506	CCAAGATTACAGTTTTCCTTCTGAAGT	59.770	37.037	15.72	0.00	33.63	3.01
2582	6899	5.876651	ATGTAGCATCAAGAGGATACACA	57.123	39.130	13.92	0.00	44.78	3.72
2656	6974	8.034313	TGGAGTTATGATTCTATAGCCTTTGT	57.966	34.615	0.00	0.00	0.00	2.83
2724	7042	5.106555	ACACATAGCATGCTTTCTACACAAC	60.107	40.000	28.02	0.00	0.00	3.32
2921	7239	7.071196	TCAAAGTGGAGTATGCCTCTGTATAAT	59.929	37.037	0.00	0.00	40.30	1.28
2969	7287	4.284490	ACCACTGCTTCTACAAGATCAAGA	59.716	41.667	0.00	0.00	0.00	3.02
3028	7346	1.559965	AATGCAGAGAGGAGCAGCCA	61.560	55.000	0.00	0.00	44.94	4.75
3042	7360	7.364585	CCCCAAGAAGGAAAACATATTAATGCA	60.365	37.037	0.00	0.00	41.22	3.96
3043	7361	6.986231	CCCCAAGAAGGAAAACATATTAATGC	59.014	38.462	0.00	0.00	41.22	3.56
3136	7454	1.067213	GTTCCCTCTCAGTGCTCTCAC	60.067	57.143	0.00	0.00	43.44	3.51
3166	7484	3.009033	CACTCCTAACCATGTCCTCCAAA	59.991	47.826	0.00	0.00	0.00	3.28
3194	7512	5.765072	CGTAAGAAGAGCTCCTTAACAAC	57.235	43.478	10.93	2.15	43.02	3.32

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.