Multiple sequence alignment - TraesCS7B01G172800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G172800 chr7B 100.000 2330 0 0 1 2330 244647259 244644930 0.000000e+00 4303.0
1 TraesCS7B01G172800 chr7B 95.575 1627 55 7 704 2329 244694343 244692733 0.000000e+00 2590.0
2 TraesCS7B01G172800 chr7B 96.726 1527 45 4 804 2329 244717729 244716207 0.000000e+00 2538.0
3 TraesCS7B01G172800 chr7B 95.291 1359 62 1 650 2008 244652999 244651643 0.000000e+00 2154.0
4 TraesCS7B01G172800 chr7B 90.416 553 28 9 126 653 244694896 244694344 0.000000e+00 704.0
5 TraesCS7B01G172800 chr7B 83.736 455 47 12 182 610 244653451 244652998 2.790000e-109 405.0
6 TraesCS7B01G172800 chr7B 78.906 256 34 16 2082 2329 244651628 244651385 3.100000e-34 156.0
7 TraesCS7B01G172800 chr7D 95.200 2229 76 14 126 2329 264362945 264360723 0.000000e+00 3494.0
8 TraesCS7B01G172800 chr7D 92.228 1840 117 23 490 2317 264327725 264325900 0.000000e+00 2582.0
9 TraesCS7B01G172800 chr7D 95.641 1606 65 4 650 2254 264340339 264338738 0.000000e+00 2573.0
10 TraesCS7B01G172800 chr7D 96.922 1527 43 3 804 2329 264372119 264370596 0.000000e+00 2556.0
11 TraesCS7B01G172800 chr7D 84.396 455 45 11 182 610 264340792 264340338 7.700000e-115 424.0
12 TraesCS7B01G172800 chr7D 100.000 34 0 0 126 159 264328561 264328528 1.930000e-06 63.9
13 TraesCS7B01G172800 chr7A 91.642 1663 107 27 650 2287 287891134 287889479 0.000000e+00 2272.0
14 TraesCS7B01G172800 chr7A 93.167 1083 69 4 423 1504 287863727 287862649 0.000000e+00 1585.0
15 TraesCS7B01G172800 chr7A 83.077 455 50 13 182 610 287891586 287891133 2.810000e-104 388.0
16 TraesCS7B01G172800 chr3B 97.143 35 1 0 127 161 693349076 693349110 2.500000e-05 60.2
17 TraesCS7B01G172800 chr3A 97.143 35 1 0 127 161 659572748 659572782 2.500000e-05 60.2
18 TraesCS7B01G172800 chr6A 88.000 50 3 2 92 141 457611065 457611111 3.230000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G172800 chr7B 244644930 244647259 2329 True 4303.00 4303 100.000000 1 2330 1 chr7B.!!$R1 2329
1 TraesCS7B01G172800 chr7B 244716207 244717729 1522 True 2538.00 2538 96.726000 804 2329 1 chr7B.!!$R2 1525
2 TraesCS7B01G172800 chr7B 244692733 244694896 2163 True 1647.00 2590 92.995500 126 2329 2 chr7B.!!$R4 2203
3 TraesCS7B01G172800 chr7B 244651385 244653451 2066 True 905.00 2154 85.977667 182 2329 3 chr7B.!!$R3 2147
4 TraesCS7B01G172800 chr7D 264360723 264362945 2222 True 3494.00 3494 95.200000 126 2329 1 chr7D.!!$R1 2203
5 TraesCS7B01G172800 chr7D 264370596 264372119 1523 True 2556.00 2556 96.922000 804 2329 1 chr7D.!!$R2 1525
6 TraesCS7B01G172800 chr7D 264338738 264340792 2054 True 1498.50 2573 90.018500 182 2254 2 chr7D.!!$R4 2072
7 TraesCS7B01G172800 chr7D 264325900 264328561 2661 True 1322.95 2582 96.114000 126 2317 2 chr7D.!!$R3 2191
8 TraesCS7B01G172800 chr7A 287862649 287863727 1078 True 1585.00 1585 93.167000 423 1504 1 chr7A.!!$R1 1081
9 TraesCS7B01G172800 chr7A 287889479 287891586 2107 True 1330.00 2272 87.359500 182 2287 2 chr7A.!!$R2 2105

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
806 1376 0.249398 AGTTATGGACCAGCACGGAC 59.751 55.0 0.0 0.0 38.63 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2000 2571 0.443869 CGGTTGATTCTTGTCGCCAG 59.556 55.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.488341 TGTCCTCTACTTATTGGTTCAAGC 58.512 41.667 0.00 0.00 0.00 4.01
24 25 4.876679 GTCCTCTACTTATTGGTTCAAGCC 59.123 45.833 0.00 0.00 0.00 4.35
25 26 4.534500 TCCTCTACTTATTGGTTCAAGCCA 59.466 41.667 0.00 0.00 36.62 4.75
34 35 4.589216 TTGGTTCAAGCCAATCTTTCAG 57.411 40.909 0.00 0.00 42.98 3.02
35 36 2.297033 TGGTTCAAGCCAATCTTTCAGC 59.703 45.455 0.00 0.00 35.25 4.26
36 37 2.353109 GGTTCAAGCCAATCTTTCAGCC 60.353 50.000 0.00 0.00 31.27 4.85
37 38 2.291209 TCAAGCCAATCTTTCAGCCA 57.709 45.000 0.00 0.00 31.27 4.75
38 39 1.888512 TCAAGCCAATCTTTCAGCCAC 59.111 47.619 0.00 0.00 31.27 5.01
39 40 1.891150 CAAGCCAATCTTTCAGCCACT 59.109 47.619 0.00 0.00 31.27 4.00
40 41 1.831580 AGCCAATCTTTCAGCCACTC 58.168 50.000 0.00 0.00 0.00 3.51
41 42 1.074405 AGCCAATCTTTCAGCCACTCA 59.926 47.619 0.00 0.00 0.00 3.41
42 43 1.888512 GCCAATCTTTCAGCCACTCAA 59.111 47.619 0.00 0.00 0.00 3.02
43 44 2.352127 GCCAATCTTTCAGCCACTCAAC 60.352 50.000 0.00 0.00 0.00 3.18
44 45 2.229784 CCAATCTTTCAGCCACTCAACC 59.770 50.000 0.00 0.00 0.00 3.77
45 46 3.152341 CAATCTTTCAGCCACTCAACCT 58.848 45.455 0.00 0.00 0.00 3.50
46 47 2.550830 TCTTTCAGCCACTCAACCTC 57.449 50.000 0.00 0.00 0.00 3.85
47 48 2.050144 TCTTTCAGCCACTCAACCTCT 58.950 47.619 0.00 0.00 0.00 3.69
48 49 2.037772 TCTTTCAGCCACTCAACCTCTC 59.962 50.000 0.00 0.00 0.00 3.20
49 50 0.687354 TTCAGCCACTCAACCTCTCC 59.313 55.000 0.00 0.00 0.00 3.71
50 51 1.079543 CAGCCACTCAACCTCTCCG 60.080 63.158 0.00 0.00 0.00 4.63
51 52 2.266055 GCCACTCAACCTCTCCGG 59.734 66.667 0.00 0.00 39.35 5.14
59 60 3.003763 ACCTCTCCGGTCCAAGGC 61.004 66.667 0.00 0.00 44.93 4.35
60 61 2.685380 CCTCTCCGGTCCAAGGCT 60.685 66.667 0.00 0.00 0.00 4.58
61 62 2.294078 CCTCTCCGGTCCAAGGCTT 61.294 63.158 0.00 0.00 0.00 4.35
62 63 1.219393 CTCTCCGGTCCAAGGCTTC 59.781 63.158 0.00 0.00 0.00 3.86
63 64 1.535444 TCTCCGGTCCAAGGCTTCA 60.535 57.895 0.00 0.00 0.00 3.02
64 65 1.376037 CTCCGGTCCAAGGCTTCAC 60.376 63.158 0.00 0.00 0.00 3.18
65 66 2.359975 CCGGTCCAAGGCTTCACC 60.360 66.667 13.00 13.00 39.61 4.02
66 67 2.359975 CGGTCCAAGGCTTCACCC 60.360 66.667 16.03 7.25 40.58 4.61
67 68 2.035783 GGTCCAAGGCTTCACCCC 59.964 66.667 12.24 0.77 40.58 4.95
68 69 2.840753 GGTCCAAGGCTTCACCCCA 61.841 63.158 12.24 0.00 40.58 4.96
69 70 1.384191 GTCCAAGGCTTCACCCCAT 59.616 57.895 0.00 0.00 40.58 4.00
70 71 0.967380 GTCCAAGGCTTCACCCCATG 60.967 60.000 0.00 0.00 40.58 3.66
71 72 1.139498 TCCAAGGCTTCACCCCATGA 61.139 55.000 0.00 0.00 40.58 3.07
72 73 0.682209 CCAAGGCTTCACCCCATGAG 60.682 60.000 0.00 0.00 38.99 2.90
73 74 0.682209 CAAGGCTTCACCCCATGAGG 60.682 60.000 0.00 0.00 38.99 3.86
88 89 2.107950 TGAGGGTTTAAGCATGGACG 57.892 50.000 0.00 0.00 0.00 4.79
89 90 1.339631 TGAGGGTTTAAGCATGGACGG 60.340 52.381 0.00 0.00 0.00 4.79
90 91 0.679960 AGGGTTTAAGCATGGACGGC 60.680 55.000 0.00 0.00 0.00 5.68
91 92 0.963355 GGGTTTAAGCATGGACGGCA 60.963 55.000 0.00 0.00 0.00 5.69
92 93 1.102978 GGTTTAAGCATGGACGGCAT 58.897 50.000 0.00 0.00 0.00 4.40
93 94 1.476488 GGTTTAAGCATGGACGGCATT 59.524 47.619 0.00 0.00 0.00 3.56
94 95 2.685897 GGTTTAAGCATGGACGGCATTA 59.314 45.455 0.00 0.00 0.00 1.90
95 96 3.317993 GGTTTAAGCATGGACGGCATTAT 59.682 43.478 0.00 0.00 0.00 1.28
96 97 4.537015 GTTTAAGCATGGACGGCATTATC 58.463 43.478 0.00 0.00 0.00 1.75
97 98 2.645838 AAGCATGGACGGCATTATCT 57.354 45.000 0.00 0.00 0.00 1.98
98 99 2.645838 AGCATGGACGGCATTATCTT 57.354 45.000 0.00 0.00 0.00 2.40
99 100 2.936202 AGCATGGACGGCATTATCTTT 58.064 42.857 0.00 0.00 0.00 2.52
100 101 2.620115 AGCATGGACGGCATTATCTTTG 59.380 45.455 0.00 0.00 0.00 2.77
101 102 2.358898 GCATGGACGGCATTATCTTTGT 59.641 45.455 0.00 0.00 0.00 2.83
102 103 3.548818 GCATGGACGGCATTATCTTTGTC 60.549 47.826 0.00 0.00 0.00 3.18
103 104 2.276201 TGGACGGCATTATCTTTGTCG 58.724 47.619 0.00 0.00 47.00 4.35
104 105 2.093921 TGGACGGCATTATCTTTGTCGA 60.094 45.455 4.56 0.00 44.59 4.20
105 106 2.933906 GGACGGCATTATCTTTGTCGAA 59.066 45.455 4.56 0.00 44.59 3.71
106 107 3.372822 GGACGGCATTATCTTTGTCGAAA 59.627 43.478 4.56 0.00 44.59 3.46
107 108 4.142773 GGACGGCATTATCTTTGTCGAAAA 60.143 41.667 4.56 0.00 44.59 2.29
108 109 5.365403 ACGGCATTATCTTTGTCGAAAAA 57.635 34.783 4.56 0.00 44.59 1.94
109 110 5.390613 ACGGCATTATCTTTGTCGAAAAAG 58.609 37.500 20.18 20.18 44.59 2.27
110 111 4.793216 CGGCATTATCTTTGTCGAAAAAGG 59.207 41.667 24.49 11.49 44.59 3.11
111 112 4.562789 GGCATTATCTTTGTCGAAAAAGGC 59.437 41.667 24.49 19.04 37.67 4.35
112 113 5.402398 GCATTATCTTTGTCGAAAAAGGCT 58.598 37.500 24.49 15.85 37.67 4.58
113 114 5.863935 GCATTATCTTTGTCGAAAAAGGCTT 59.136 36.000 24.49 13.90 37.67 4.35
114 115 6.366061 GCATTATCTTTGTCGAAAAAGGCTTT 59.634 34.615 24.49 6.68 37.67 3.51
115 116 7.410835 GCATTATCTTTGTCGAAAAAGGCTTTC 60.411 37.037 24.49 9.05 37.67 2.62
187 384 3.695816 GATTATCTTTTGAAGCCACCGC 58.304 45.455 0.00 0.00 0.00 5.68
209 406 4.156190 GCGGTATGCATCTAGTTAGCTCTA 59.844 45.833 0.19 0.00 45.45 2.43
320 621 7.064609 TGAGTCGTCAAAATTCACATCTTATCC 59.935 37.037 0.00 0.00 0.00 2.59
321 622 6.036083 AGTCGTCAAAATTCACATCTTATCCG 59.964 38.462 0.00 0.00 0.00 4.18
327 628 9.839817 TCAAAATTCACATCTTATCCGGTTATA 57.160 29.630 0.00 0.00 0.00 0.98
342 643 1.003223 GTTATACCAAATCCACGCGCC 60.003 52.381 5.73 0.00 0.00 6.53
388 690 7.708322 TCTGCATATAATTTCTCACTCACTGAC 59.292 37.037 0.00 0.00 0.00 3.51
400 702 5.305585 TCACTCACTGACCTTATTTGGTTC 58.694 41.667 0.00 0.00 41.00 3.62
408 710 4.202274 TGACCTTATTTGGTTCGTGTCAGA 60.202 41.667 0.00 0.00 41.00 3.27
430 992 6.372659 CAGAAATGAAGGTAGTGTGCACTATT 59.627 38.462 19.41 5.99 44.73 1.73
431 993 6.595716 AGAAATGAAGGTAGTGTGCACTATTC 59.404 38.462 19.41 14.19 44.73 1.75
432 994 4.202245 TGAAGGTAGTGTGCACTATTCC 57.798 45.455 19.41 14.72 44.73 3.01
500 1068 8.519799 AGAAGTACACAAGAATTCCAGAAAAA 57.480 30.769 0.65 0.00 0.00 1.94
664 1232 1.884579 CTGGCCAGCATGTTATCCATC 59.115 52.381 22.33 0.00 0.00 3.51
738 1306 7.823149 AAACAAAATCATGAGATTAAGCAGC 57.177 32.000 0.09 0.00 43.52 5.25
801 1371 1.209504 GCAGGTAGTTATGGACCAGCA 59.790 52.381 0.00 0.00 45.05 4.41
806 1376 0.249398 AGTTATGGACCAGCACGGAC 59.751 55.000 0.00 0.00 38.63 4.79
1112 1682 1.891150 CAACTGCTCCTCCTTGCAAAT 59.109 47.619 0.00 0.00 38.81 2.32
1203 1773 1.269998 AGGTGTACTGTTGACTCGAGC 59.730 52.381 13.61 6.11 0.00 5.03
1371 1941 2.039084 AGCGGTGTCATCTCCTTTTCTT 59.961 45.455 0.00 0.00 0.00 2.52
1372 1942 3.260884 AGCGGTGTCATCTCCTTTTCTTA 59.739 43.478 0.00 0.00 0.00 2.10
1399 1969 4.885907 CCACTTGCAGATCTTGGATAATGT 59.114 41.667 4.60 0.00 0.00 2.71
1769 2339 1.552337 AGAATGAGAGAGCGCCTTTCA 59.448 47.619 17.19 17.19 39.87 2.69
1875 2445 2.704464 TCATGCCAACTCATCTCCAG 57.296 50.000 0.00 0.00 0.00 3.86
1937 2508 2.158957 GGAATCTTCGCCCATGTGTAGA 60.159 50.000 0.00 0.00 33.68 2.59
1959 2530 7.856145 AGATCAAATTCTTTAGTGCAGTAGG 57.144 36.000 0.72 0.00 0.00 3.18
1961 2532 6.801539 TCAAATTCTTTAGTGCAGTAGGTG 57.198 37.500 0.72 0.00 0.00 4.00
1975 2546 4.256920 CAGTAGGTGTTCTTCCAATGAGG 58.743 47.826 0.00 0.00 39.47 3.86
2000 2571 7.968405 GGTATCACATTGTCATGTTCCTTTAAC 59.032 37.037 0.00 0.00 41.16 2.01
2163 2759 1.270839 ACAACTCATGCTACCTGCGTT 60.271 47.619 0.00 0.00 46.63 4.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.488341 GCTTGAACCAATAAGTAGAGGACA 58.512 41.667 0.00 0.00 0.00 4.02
2 3 4.534500 TGGCTTGAACCAATAAGTAGAGGA 59.466 41.667 0.00 0.00 36.55 3.71
3 4 4.843728 TGGCTTGAACCAATAAGTAGAGG 58.156 43.478 0.00 0.00 36.55 3.69
14 15 2.297033 GCTGAAAGATTGGCTTGAACCA 59.703 45.455 0.00 0.00 36.80 3.67
15 16 2.353109 GGCTGAAAGATTGGCTTGAACC 60.353 50.000 0.00 0.00 36.80 3.62
16 17 2.297033 TGGCTGAAAGATTGGCTTGAAC 59.703 45.455 0.00 0.00 36.80 3.18
17 18 2.297033 GTGGCTGAAAGATTGGCTTGAA 59.703 45.455 0.00 0.00 36.80 2.69
18 19 1.888512 GTGGCTGAAAGATTGGCTTGA 59.111 47.619 0.00 0.00 36.80 3.02
19 20 1.891150 AGTGGCTGAAAGATTGGCTTG 59.109 47.619 0.00 0.00 36.80 4.01
20 21 2.165998 GAGTGGCTGAAAGATTGGCTT 58.834 47.619 0.00 0.00 38.88 4.35
21 22 1.074405 TGAGTGGCTGAAAGATTGGCT 59.926 47.619 0.00 0.00 34.07 4.75
22 23 1.538047 TGAGTGGCTGAAAGATTGGC 58.462 50.000 0.00 0.00 34.07 4.52
23 24 2.229784 GGTTGAGTGGCTGAAAGATTGG 59.770 50.000 0.00 0.00 34.07 3.16
24 25 3.152341 AGGTTGAGTGGCTGAAAGATTG 58.848 45.455 0.00 0.00 34.07 2.67
25 26 3.073650 AGAGGTTGAGTGGCTGAAAGATT 59.926 43.478 0.00 0.00 34.07 2.40
26 27 2.641815 AGAGGTTGAGTGGCTGAAAGAT 59.358 45.455 0.00 0.00 34.07 2.40
27 28 2.037772 GAGAGGTTGAGTGGCTGAAAGA 59.962 50.000 0.00 0.00 34.07 2.52
28 29 2.421619 GAGAGGTTGAGTGGCTGAAAG 58.578 52.381 0.00 0.00 0.00 2.62
29 30 1.072331 GGAGAGGTTGAGTGGCTGAAA 59.928 52.381 0.00 0.00 0.00 2.69
30 31 0.687354 GGAGAGGTTGAGTGGCTGAA 59.313 55.000 0.00 0.00 0.00 3.02
31 32 1.536073 CGGAGAGGTTGAGTGGCTGA 61.536 60.000 0.00 0.00 0.00 4.26
32 33 1.079543 CGGAGAGGTTGAGTGGCTG 60.080 63.158 0.00 0.00 0.00 4.85
33 34 2.286523 CCGGAGAGGTTGAGTGGCT 61.287 63.158 0.00 0.00 34.51 4.75
34 35 2.266055 CCGGAGAGGTTGAGTGGC 59.734 66.667 0.00 0.00 34.51 5.01
44 45 1.219393 GAAGCCTTGGACCGGAGAG 59.781 63.158 9.46 0.00 0.00 3.20
45 46 1.535444 TGAAGCCTTGGACCGGAGA 60.535 57.895 9.46 0.00 0.00 3.71
46 47 1.376037 GTGAAGCCTTGGACCGGAG 60.376 63.158 9.46 0.00 0.00 4.63
47 48 2.747686 GTGAAGCCTTGGACCGGA 59.252 61.111 9.46 0.00 0.00 5.14
48 49 2.359975 GGTGAAGCCTTGGACCGG 60.360 66.667 0.00 0.00 0.00 5.28
49 50 2.359975 GGGTGAAGCCTTGGACCG 60.360 66.667 0.00 0.00 37.43 4.79
50 51 2.035783 GGGGTGAAGCCTTGGACC 59.964 66.667 0.00 0.00 37.43 4.46
51 52 0.967380 CATGGGGTGAAGCCTTGGAC 60.967 60.000 0.00 0.00 37.43 4.02
52 53 1.139498 TCATGGGGTGAAGCCTTGGA 61.139 55.000 0.00 0.00 37.43 3.53
53 54 0.682209 CTCATGGGGTGAAGCCTTGG 60.682 60.000 0.00 0.00 36.14 3.61
54 55 0.682209 CCTCATGGGGTGAAGCCTTG 60.682 60.000 2.32 0.00 36.14 3.61
55 56 1.693640 CCTCATGGGGTGAAGCCTT 59.306 57.895 2.32 0.00 36.14 4.35
56 57 3.419858 CCTCATGGGGTGAAGCCT 58.580 61.111 2.32 0.00 36.14 4.58
67 68 2.355756 CGTCCATGCTTAAACCCTCATG 59.644 50.000 0.00 0.00 36.86 3.07
68 69 2.643551 CGTCCATGCTTAAACCCTCAT 58.356 47.619 0.00 0.00 0.00 2.90
69 70 1.339631 CCGTCCATGCTTAAACCCTCA 60.340 52.381 0.00 0.00 0.00 3.86
70 71 1.379527 CCGTCCATGCTTAAACCCTC 58.620 55.000 0.00 0.00 0.00 4.30
71 72 0.679960 GCCGTCCATGCTTAAACCCT 60.680 55.000 0.00 0.00 0.00 4.34
72 73 0.963355 TGCCGTCCATGCTTAAACCC 60.963 55.000 0.00 0.00 0.00 4.11
73 74 1.102978 ATGCCGTCCATGCTTAAACC 58.897 50.000 0.00 0.00 31.48 3.27
74 75 2.939460 AATGCCGTCCATGCTTAAAC 57.061 45.000 0.00 0.00 33.49 2.01
75 76 4.460263 AGATAATGCCGTCCATGCTTAAA 58.540 39.130 0.00 0.00 33.49 1.52
76 77 4.085357 AGATAATGCCGTCCATGCTTAA 57.915 40.909 0.00 0.00 33.49 1.85
77 78 3.769739 AGATAATGCCGTCCATGCTTA 57.230 42.857 0.00 0.00 33.49 3.09
78 79 2.645838 AGATAATGCCGTCCATGCTT 57.354 45.000 0.00 0.00 33.49 3.91
79 80 2.620115 CAAAGATAATGCCGTCCATGCT 59.380 45.455 0.00 0.00 33.49 3.79
80 81 2.358898 ACAAAGATAATGCCGTCCATGC 59.641 45.455 0.00 0.00 33.49 4.06
81 82 3.303329 CGACAAAGATAATGCCGTCCATG 60.303 47.826 0.00 0.00 33.49 3.66
82 83 2.872245 CGACAAAGATAATGCCGTCCAT 59.128 45.455 0.00 0.00 35.06 3.41
83 84 2.093921 TCGACAAAGATAATGCCGTCCA 60.094 45.455 0.00 0.00 0.00 4.02
84 85 2.546778 TCGACAAAGATAATGCCGTCC 58.453 47.619 0.00 0.00 0.00 4.79
85 86 4.593597 TTTCGACAAAGATAATGCCGTC 57.406 40.909 0.00 0.00 0.00 4.79
86 87 5.365403 TTTTTCGACAAAGATAATGCCGT 57.635 34.783 0.00 0.00 0.00 5.68
87 88 4.793216 CCTTTTTCGACAAAGATAATGCCG 59.207 41.667 22.48 2.68 36.03 5.69
88 89 4.562789 GCCTTTTTCGACAAAGATAATGCC 59.437 41.667 22.48 2.25 36.03 4.40
89 90 5.402398 AGCCTTTTTCGACAAAGATAATGC 58.598 37.500 22.48 16.63 36.03 3.56
90 91 7.873739 AAAGCCTTTTTCGACAAAGATAATG 57.126 32.000 22.48 8.75 36.03 1.90
111 112 0.868406 GATAATGAGCGGGGCGAAAG 59.132 55.000 0.00 0.00 0.00 2.62
112 113 0.468226 AGATAATGAGCGGGGCGAAA 59.532 50.000 0.00 0.00 0.00 3.46
113 114 0.468226 AAGATAATGAGCGGGGCGAA 59.532 50.000 0.00 0.00 0.00 4.70
114 115 0.468226 AAAGATAATGAGCGGGGCGA 59.532 50.000 0.00 0.00 0.00 5.54
115 116 1.002468 CAAAAGATAATGAGCGGGGCG 60.002 52.381 0.00 0.00 0.00 6.13
116 117 2.297701 TCAAAAGATAATGAGCGGGGC 58.702 47.619 0.00 0.00 0.00 5.80
117 118 3.243201 GCTTCAAAAGATAATGAGCGGGG 60.243 47.826 0.00 0.00 0.00 5.73
118 119 3.378112 TGCTTCAAAAGATAATGAGCGGG 59.622 43.478 0.00 0.00 0.00 6.13
119 120 4.142622 TGTGCTTCAAAAGATAATGAGCGG 60.143 41.667 0.00 0.00 0.00 5.52
120 121 4.973396 TGTGCTTCAAAAGATAATGAGCG 58.027 39.130 0.00 0.00 0.00 5.03
121 122 5.287992 GCTTGTGCTTCAAAAGATAATGAGC 59.712 40.000 1.16 0.00 30.76 4.26
122 123 6.384224 TGCTTGTGCTTCAAAAGATAATGAG 58.616 36.000 1.16 0.00 40.48 2.90
123 124 6.330004 TGCTTGTGCTTCAAAAGATAATGA 57.670 33.333 1.16 0.00 40.48 2.57
124 125 6.864685 TCTTGCTTGTGCTTCAAAAGATAATG 59.135 34.615 1.16 0.00 40.48 1.90
187 384 4.775058 AGAGCTAACTAGATGCATACCG 57.225 45.455 0.00 0.00 0.00 4.02
209 406 0.761187 TGGCAGCAGACAGAGAACTT 59.239 50.000 0.00 0.00 0.00 2.66
320 621 1.259507 CGCGTGGATTTGGTATAACCG 59.740 52.381 0.00 0.00 42.58 4.44
321 622 1.003223 GCGCGTGGATTTGGTATAACC 60.003 52.381 8.43 0.00 39.22 2.85
327 628 4.652131 TGGGCGCGTGGATTTGGT 62.652 61.111 8.43 0.00 0.00 3.67
342 643 6.867816 TGCAGAGCACATAAATTTTAAACTGG 59.132 34.615 0.00 0.00 31.71 4.00
388 690 5.682943 TTTCTGACACGAACCAAATAAGG 57.317 39.130 0.00 0.00 0.00 2.69
400 702 4.150627 CACACTACCTTCATTTCTGACACG 59.849 45.833 0.00 0.00 0.00 4.49
408 710 5.648092 GGAATAGTGCACACTACCTTCATTT 59.352 40.000 21.04 7.86 45.61 2.32
430 992 4.082026 CCATATCATCTGAGCACATACGGA 60.082 45.833 0.00 0.00 0.00 4.69
431 993 4.082026 TCCATATCATCTGAGCACATACGG 60.082 45.833 0.00 0.00 0.00 4.02
432 994 5.064441 TCCATATCATCTGAGCACATACG 57.936 43.478 0.00 0.00 0.00 3.06
444 1006 5.046735 ACTCAGTACTGGCATCCATATCATC 60.047 44.000 22.48 0.00 30.82 2.92
500 1068 4.815846 GGTGGTTGCAGAACAATTTGAATT 59.184 37.500 2.79 0.00 41.27 2.17
501 1069 4.141756 TGGTGGTTGCAGAACAATTTGAAT 60.142 37.500 2.79 0.00 41.27 2.57
633 1201 2.811410 TGCTGGCCAGATTTTCTTCAT 58.189 42.857 37.21 0.00 0.00 2.57
801 1371 0.108424 GCATGCTTCTGAGAGTCCGT 60.108 55.000 11.37 0.00 0.00 4.69
806 1376 2.434428 ACCTTTGCATGCTTCTGAGAG 58.566 47.619 20.33 2.32 0.00 3.20
1112 1682 5.479306 CATTCCAGAAGAAGAACTCGGTTA 58.521 41.667 0.00 0.00 38.07 2.85
1203 1773 1.118838 GGGAGATCACCACCTCTCTG 58.881 60.000 11.56 0.00 38.36 3.35
1697 2267 5.012561 ACAGAGGAAAGAGTCTTAGCAACAT 59.987 40.000 5.65 0.00 0.00 2.71
1769 2339 6.016777 CAGAAGAAGGCTAAACACATCAAACT 60.017 38.462 0.00 0.00 0.00 2.66
1848 2418 1.820519 TGAGTTGGCATGATTCCTTGC 59.179 47.619 0.00 0.00 41.23 4.01
1937 2508 6.942576 ACACCTACTGCACTAAAGAATTTGAT 59.057 34.615 0.00 0.00 39.63 2.57
1959 2530 5.245531 TGTGATACCTCATTGGAAGAACAC 58.754 41.667 0.00 0.00 39.71 3.32
1961 2532 6.789262 CAATGTGATACCTCATTGGAAGAAC 58.211 40.000 4.23 0.00 44.36 3.01
1975 2546 8.730680 AGTTAAAGGAACATGACAATGTGATAC 58.269 33.333 0.00 0.00 46.58 2.24
2000 2571 0.443869 CGGTTGATTCTTGTCGCCAG 59.556 55.000 0.00 0.00 0.00 4.85
2089 2682 7.625828 AAAACAGCACAATACCTAGATAACC 57.374 36.000 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.