Multiple sequence alignment - TraesCS7B01G172200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G172200 chr7B 100.000 2711 0 0 1 2711 244423989 244426699 0.000000e+00 5007
1 TraesCS7B01G172200 chr7B 79.122 752 138 13 974 1718 244635902 244636641 4.030000e-138 501
2 TraesCS7B01G172200 chr7D 95.295 2168 80 13 1 2168 264072543 264074688 0.000000e+00 3419
3 TraesCS7B01G172200 chr7D 80.480 666 105 15 1202 1852 264082494 264083149 1.130000e-133 486
4 TraesCS7B01G172200 chr7D 75.328 916 177 29 956 1852 264311927 264312812 7.040000e-106 394
5 TraesCS7B01G172200 chr7D 91.034 290 13 2 2286 2575 264076311 264076587 1.970000e-101 379
6 TraesCS7B01G172200 chr7D 98.561 139 2 0 2573 2711 264082756 264082894 2.080000e-61 246
7 TraesCS7B01G172200 chr7A 97.413 1933 45 3 1 1932 287549885 287551813 0.000000e+00 3288
8 TraesCS7B01G172200 chr7A 91.860 430 18 7 2034 2462 287551810 287552223 3.890000e-163 584
9 TraesCS7B01G172200 chr7A 75.685 876 164 30 996 1852 287805237 287806082 2.530000e-105 392
10 TraesCS7B01G172200 chr7A 97.122 139 4 0 2573 2711 287552807 287552945 4.510000e-58 235
11 TraesCS7B01G172200 chr3B 78.767 730 134 14 996 1717 780315854 780315138 1.140000e-128 470
12 TraesCS7B01G172200 chr3B 78.767 730 134 14 996 1717 780321228 780320512 1.140000e-128 470
13 TraesCS7B01G172200 chr3B 78.767 730 134 14 996 1717 780325833 780325117 1.140000e-128 470
14 TraesCS7B01G172200 chr3B 86.331 139 19 0 2573 2711 780301301 780301163 4.680000e-33 152
15 TraesCS7B01G172200 chr3B 83.942 137 22 0 2575 2711 780315393 780315257 6.090000e-27 132
16 TraesCS7B01G172200 chr3B 83.942 137 22 0 2575 2711 780320767 780320631 6.090000e-27 132
17 TraesCS7B01G172200 chr3B 84.962 133 17 1 2579 2711 780354829 780354700 6.090000e-27 132
18 TraesCS7B01G172200 chr6A 76.304 920 174 32 954 1856 34390516 34389624 4.120000e-123 451
19 TraesCS7B01G172200 chr6B 78.356 730 133 18 996 1718 62633904 62633193 1.480000e-122 449
20 TraesCS7B01G172200 chrUn 75.941 877 167 29 974 1832 101984016 101983166 6.990000e-111 411
21 TraesCS7B01G172200 chr3D 85.612 139 20 0 2573 2711 583169327 583169189 2.180000e-31 147
22 TraesCS7B01G172200 chr3D 90.000 110 11 0 2602 2711 583277431 583277322 2.810000e-30 143
23 TraesCS7B01G172200 chr3D 84.397 141 18 4 2573 2711 583180856 583180718 4.710000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G172200 chr7B 244423989 244426699 2710 False 5007 5007 100.0000 1 2711 1 chr7B.!!$F1 2710
1 TraesCS7B01G172200 chr7B 244635902 244636641 739 False 501 501 79.1220 974 1718 1 chr7B.!!$F2 744
2 TraesCS7B01G172200 chr7D 264072543 264076587 4044 False 1899 3419 93.1645 1 2575 2 chr7D.!!$F2 2574
3 TraesCS7B01G172200 chr7D 264311927 264312812 885 False 394 394 75.3280 956 1852 1 chr7D.!!$F1 896
4 TraesCS7B01G172200 chr7D 264082494 264083149 655 False 366 486 89.5205 1202 2711 2 chr7D.!!$F3 1509
5 TraesCS7B01G172200 chr7A 287549885 287552945 3060 False 1369 3288 95.4650 1 2711 3 chr7A.!!$F2 2710
6 TraesCS7B01G172200 chr7A 287805237 287806082 845 False 392 392 75.6850 996 1852 1 chr7A.!!$F1 856
7 TraesCS7B01G172200 chr3B 780325117 780325833 716 True 470 470 78.7670 996 1717 1 chr3B.!!$R2 721
8 TraesCS7B01G172200 chr3B 780315138 780315854 716 True 301 470 81.3545 996 2711 2 chr3B.!!$R4 1715
9 TraesCS7B01G172200 chr3B 780320512 780321228 716 True 301 470 81.3545 996 2711 2 chr3B.!!$R5 1715
10 TraesCS7B01G172200 chr6A 34389624 34390516 892 True 451 451 76.3040 954 1856 1 chr6A.!!$R1 902
11 TraesCS7B01G172200 chr6B 62633193 62633904 711 True 449 449 78.3560 996 1718 1 chr6B.!!$R1 722
12 TraesCS7B01G172200 chrUn 101983166 101984016 850 True 411 411 75.9410 974 1832 1 chrUn.!!$R1 858

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
747 748 2.667318 CCAGCGCACCAGTGTAACG 61.667 63.158 11.47 0.0 45.86 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2367 5356 0.032678 CTGAGTCTGTTGCTGGACGT 59.967 55.0 0.0 0.0 37.52 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 3.237268 ACTCCTCCTATCTAGCAGGTG 57.763 52.381 9.34 7.43 34.56 4.00
417 418 9.341078 AGAACAGGAAAAATACATTGCAAATTT 57.659 25.926 1.71 2.15 0.00 1.82
527 528 4.558226 TGTACAGTGGATCTTGCTCAAT 57.442 40.909 0.00 0.00 0.00 2.57
591 592 6.633500 TTGTAATTAGAACAGCTTTGCACT 57.367 33.333 0.00 0.00 0.00 4.40
621 622 8.830201 ATGCAAGCAAAAACACATAGATAAAA 57.170 26.923 0.00 0.00 0.00 1.52
717 718 3.727726 ACATGACAACGTGACATCTCAA 58.272 40.909 0.00 0.00 36.88 3.02
747 748 2.667318 CCAGCGCACCAGTGTAACG 61.667 63.158 11.47 0.00 45.86 3.18
863 864 3.887621 TCCCTTTGTCTACCATCGAAG 57.112 47.619 0.00 0.00 0.00 3.79
922 923 6.071840 AGGTCTCAAGACAAGACTATACACAC 60.072 42.308 11.99 0.00 46.47 3.82
937 938 3.066291 ACACACCAAGACAACACTTGA 57.934 42.857 9.55 0.00 46.85 3.02
1376 2840 4.521146 CAAGCCAAGATCCAGTCTTACAT 58.479 43.478 0.00 0.00 45.35 2.29
1442 2906 2.277858 AGGCGACTTCGGACAAGAT 58.722 52.632 0.02 0.00 37.44 2.40
1524 2988 1.358759 CGTGGTGCACCTTTTGTCC 59.641 57.895 34.75 8.17 36.82 4.02
1653 3123 0.681733 TTGAGAGTGGAGCAGGACAC 59.318 55.000 0.00 0.00 37.86 3.67
1718 3188 7.701539 ACATACTTAGCTCATAGATCTCCAG 57.298 40.000 0.00 0.00 0.00 3.86
1760 3230 6.041511 TCATGTTATTGGCATCCGATTTTTG 58.958 36.000 0.00 0.00 0.00 2.44
1768 3238 2.098117 GCATCCGATTTTTGGAGGACTG 59.902 50.000 0.00 0.00 39.61 3.51
1875 3354 4.158579 TGTGCCCGCAATATATTTTTGTGA 59.841 37.500 11.25 0.00 36.86 3.58
1894 3373 9.906660 TTTTGTGATGTCATAATAGTTTGGTTC 57.093 29.630 0.00 0.00 0.00 3.62
1898 3377 9.113838 GTGATGTCATAATAGTTTGGTTCAGAT 57.886 33.333 0.00 0.00 0.00 2.90
1903 3382 9.832445 GTCATAATAGTTTGGTTCAGATCCTTA 57.168 33.333 0.00 0.00 0.00 2.69
1910 3389 4.591321 TGGTTCAGATCCTTATTTGCCT 57.409 40.909 0.00 0.00 0.00 4.75
1930 3409 4.406069 CCTGATCTTGTTTTGCGTACATG 58.594 43.478 0.00 0.00 0.00 3.21
1943 3422 2.872245 GCGTACATGATACATGCCAGTT 59.128 45.455 0.00 0.00 0.00 3.16
1944 3423 3.312421 GCGTACATGATACATGCCAGTTT 59.688 43.478 0.00 0.00 0.00 2.66
1965 3444 7.917505 CAGTTTGAAGTCAGAAAAAGCTTGTAT 59.082 33.333 0.00 0.00 0.00 2.29
2012 3491 4.596585 CCCACCCCACCCACACAC 62.597 72.222 0.00 0.00 0.00 3.82
2013 3492 3.814906 CCACCCCACCCACACACA 61.815 66.667 0.00 0.00 0.00 3.72
2108 3592 9.809096 TGTGAAAATTACAAATTACTGCAGAAA 57.191 25.926 23.35 4.90 0.00 2.52
2225 4995 7.671495 AAAATGGTGTAATTTGAAATGGAGC 57.329 32.000 0.00 0.00 30.21 4.70
2226 4996 6.610075 AATGGTGTAATTTGAAATGGAGCT 57.390 33.333 0.00 0.00 0.00 4.09
2227 4997 5.389859 TGGTGTAATTTGAAATGGAGCTG 57.610 39.130 0.00 0.00 0.00 4.24
2228 4998 4.220382 TGGTGTAATTTGAAATGGAGCTGG 59.780 41.667 0.00 0.00 0.00 4.85
2229 4999 4.220602 GGTGTAATTTGAAATGGAGCTGGT 59.779 41.667 0.00 0.00 0.00 4.00
2230 5000 5.163513 GTGTAATTTGAAATGGAGCTGGTG 58.836 41.667 0.00 0.00 0.00 4.17
2231 5001 5.048083 GTGTAATTTGAAATGGAGCTGGTGA 60.048 40.000 0.00 0.00 0.00 4.02
2232 5002 5.716228 TGTAATTTGAAATGGAGCTGGTGAT 59.284 36.000 0.00 0.00 0.00 3.06
2233 5003 4.996788 ATTTGAAATGGAGCTGGTGATC 57.003 40.909 0.00 0.00 0.00 2.92
2258 5028 3.589542 CCCACCACCACCACCCAT 61.590 66.667 0.00 0.00 0.00 4.00
2259 5029 2.035626 CCACCACCACCACCCATC 59.964 66.667 0.00 0.00 0.00 3.51
2260 5030 2.538141 CCACCACCACCACCCATCT 61.538 63.158 0.00 0.00 0.00 2.90
2261 5031 1.303561 CACCACCACCACCCATCTG 60.304 63.158 0.00 0.00 0.00 2.90
2262 5032 2.361610 CCACCACCACCCATCTGC 60.362 66.667 0.00 0.00 0.00 4.26
2263 5033 2.435663 CACCACCACCCATCTGCA 59.564 61.111 0.00 0.00 0.00 4.41
2264 5034 1.000521 CACCACCACCCATCTGCAT 60.001 57.895 0.00 0.00 0.00 3.96
2265 5035 1.000521 ACCACCACCCATCTGCATG 60.001 57.895 0.00 0.00 0.00 4.06
2266 5036 1.000521 CCACCACCCATCTGCATGT 60.001 57.895 0.00 0.00 0.00 3.21
2267 5037 1.317431 CCACCACCCATCTGCATGTG 61.317 60.000 0.00 0.00 0.00 3.21
2268 5038 0.322726 CACCACCCATCTGCATGTGA 60.323 55.000 0.00 0.00 0.00 3.58
2269 5039 0.034767 ACCACCCATCTGCATGTGAG 60.035 55.000 0.00 0.00 0.00 3.51
2270 5040 0.750546 CCACCCATCTGCATGTGAGG 60.751 60.000 0.00 0.00 0.00 3.86
2271 5041 1.077212 ACCCATCTGCATGTGAGGC 60.077 57.895 0.00 0.00 0.00 4.70
2272 5042 1.826921 CCCATCTGCATGTGAGGCC 60.827 63.158 0.00 0.00 0.00 5.19
2273 5043 1.226542 CCATCTGCATGTGAGGCCT 59.773 57.895 3.86 3.86 0.00 5.19
2274 5044 0.395311 CCATCTGCATGTGAGGCCTT 60.395 55.000 6.77 0.00 0.00 4.35
2275 5045 1.471119 CATCTGCATGTGAGGCCTTT 58.529 50.000 6.77 0.00 0.00 3.11
2276 5046 1.134367 CATCTGCATGTGAGGCCTTTG 59.866 52.381 6.77 4.02 0.00 2.77
2277 5047 1.214589 CTGCATGTGAGGCCTTTGC 59.785 57.895 6.77 14.88 0.00 3.68
2278 5048 1.529152 CTGCATGTGAGGCCTTTGCA 61.529 55.000 23.60 23.60 40.73 4.08
2279 5049 0.901114 TGCATGTGAGGCCTTTGCAT 60.901 50.000 22.21 16.76 38.32 3.96
2284 5054 3.105659 GAGGCCTTTGCATCGCTC 58.894 61.111 6.77 0.00 38.67 5.03
2289 5278 1.598701 GCCTTTGCATCGCTCCCTTT 61.599 55.000 0.00 0.00 37.47 3.11
2296 5285 0.815615 CATCGCTCCCTTTGGGCTAC 60.816 60.000 0.00 0.00 43.94 3.58
2322 5311 3.027419 GTGAAACCCTTGCAGAGCT 57.973 52.632 0.00 0.00 0.00 4.09
2338 5327 3.013932 CTCAGCAGCCCCTCCCTT 61.014 66.667 0.00 0.00 0.00 3.95
2340 5329 3.333219 CAGCAGCCCCTCCCTTGA 61.333 66.667 0.00 0.00 0.00 3.02
2343 5332 4.101448 CAGCCCCTCCCTTGACCG 62.101 72.222 0.00 0.00 0.00 4.79
2371 5360 7.261829 ACTATCTAATAGTGGACTCAACGTC 57.738 40.000 0.00 0.00 44.07 4.34
2405 5394 1.202855 AGCCACACAGCTCATTCTTGT 60.203 47.619 0.00 0.00 39.48 3.16
2431 5420 4.685924 CAATAGTTGGAACATGGGAATGC 58.314 43.478 0.00 0.00 39.30 3.56
2502 5491 6.377146 ACACAAGACAACTTTGGTGTTCTAAT 59.623 34.615 0.00 0.00 38.92 1.73
2503 5492 6.912591 CACAAGACAACTTTGGTGTTCTAATC 59.087 38.462 0.00 0.00 33.70 1.75
2504 5493 5.924475 AGACAACTTTGGTGTTCTAATCG 57.076 39.130 0.00 0.00 0.00 3.34
2505 5494 5.365619 AGACAACTTTGGTGTTCTAATCGT 58.634 37.500 0.00 0.00 0.00 3.73
2534 5523 1.065199 TGCCAGGTCTCAATCCATGAC 60.065 52.381 0.00 0.00 33.47 3.06
2545 5534 3.199289 TCAATCCATGACAGACAGCATCT 59.801 43.478 0.00 0.00 32.83 2.90
2575 5564 4.218200 TGAAATGGCATGATTCTTCGTGTT 59.782 37.500 0.00 0.00 40.41 3.32
2576 5565 3.770263 ATGGCATGATTCTTCGTGTTG 57.230 42.857 0.00 0.00 40.41 3.33
2577 5566 2.777094 TGGCATGATTCTTCGTGTTGA 58.223 42.857 0.00 0.00 40.41 3.18
2578 5567 2.483877 TGGCATGATTCTTCGTGTTGAC 59.516 45.455 0.00 0.00 40.41 3.18
2579 5568 2.159517 GGCATGATTCTTCGTGTTGACC 60.160 50.000 0.00 0.00 40.41 4.02
2580 5569 2.483877 GCATGATTCTTCGTGTTGACCA 59.516 45.455 0.00 0.00 40.41 4.02
2581 5570 3.058293 GCATGATTCTTCGTGTTGACCAA 60.058 43.478 0.00 0.00 40.41 3.67
2582 5571 4.715896 CATGATTCTTCGTGTTGACCAAG 58.284 43.478 0.00 0.00 34.69 3.61
2583 5572 3.138304 TGATTCTTCGTGTTGACCAAGG 58.862 45.455 0.00 0.00 0.00 3.61
2584 5573 1.305201 TTCTTCGTGTTGACCAAGGC 58.695 50.000 0.00 0.00 0.00 4.35
2585 5574 0.878523 TCTTCGTGTTGACCAAGGCG 60.879 55.000 0.00 0.00 0.00 5.52
2586 5575 0.878523 CTTCGTGTTGACCAAGGCGA 60.879 55.000 0.00 5.05 0.00 5.54
2587 5576 0.878523 TTCGTGTTGACCAAGGCGAG 60.879 55.000 0.00 0.00 32.31 5.03
2588 5577 2.317609 CGTGTTGACCAAGGCGAGG 61.318 63.158 0.00 0.00 0.00 4.63
2589 5578 1.966451 GTGTTGACCAAGGCGAGGG 60.966 63.158 3.39 0.00 0.00 4.30
2590 5579 2.144078 TGTTGACCAAGGCGAGGGA 61.144 57.895 3.39 0.00 0.00 4.20
2591 5580 1.376037 GTTGACCAAGGCGAGGGAG 60.376 63.158 3.39 0.00 0.00 4.30
2592 5581 3.254024 TTGACCAAGGCGAGGGAGC 62.254 63.158 3.39 0.00 0.00 4.70
2593 5582 3.394836 GACCAAGGCGAGGGAGCT 61.395 66.667 0.00 0.00 37.29 4.09
2594 5583 3.672295 GACCAAGGCGAGGGAGCTG 62.672 68.421 0.00 0.00 37.29 4.24
2595 5584 3.393970 CCAAGGCGAGGGAGCTGA 61.394 66.667 0.00 0.00 37.29 4.26
2596 5585 2.125350 CAAGGCGAGGGAGCTGAC 60.125 66.667 0.00 0.00 37.29 3.51
2597 5586 3.764466 AAGGCGAGGGAGCTGACG 61.764 66.667 0.00 0.00 37.29 4.35
2600 5589 4.500116 GCGAGGGAGCTGACGGTC 62.500 72.222 0.00 0.00 36.93 4.79
2601 5590 2.752238 CGAGGGAGCTGACGGTCT 60.752 66.667 9.88 0.00 37.77 3.85
2602 5591 2.766400 CGAGGGAGCTGACGGTCTC 61.766 68.421 9.88 0.00 38.43 3.36
2603 5592 2.767352 AGGGAGCTGACGGTCTCT 59.233 61.111 9.88 6.46 43.42 3.10
2604 5593 1.379309 AGGGAGCTGACGGTCTCTC 60.379 63.158 16.97 16.97 44.97 3.20
2605 5594 1.379309 GGGAGCTGACGGTCTCTCT 60.379 63.158 21.31 11.76 35.27 3.10
2606 5595 0.107116 GGGAGCTGACGGTCTCTCTA 60.107 60.000 21.31 0.00 35.27 2.43
2607 5596 1.018910 GGAGCTGACGGTCTCTCTAC 58.981 60.000 21.31 9.74 37.77 2.59
2608 5597 1.407712 GGAGCTGACGGTCTCTCTACT 60.408 57.143 21.31 7.51 37.77 2.57
2609 5598 2.361789 GAGCTGACGGTCTCTCTACTT 58.638 52.381 17.57 0.00 34.86 2.24
2610 5599 2.088423 AGCTGACGGTCTCTCTACTTG 58.912 52.381 9.88 0.00 0.00 3.16
2611 5600 2.085320 GCTGACGGTCTCTCTACTTGA 58.915 52.381 9.88 0.00 0.00 3.02
2612 5601 2.096819 GCTGACGGTCTCTCTACTTGAG 59.903 54.545 9.88 0.00 43.96 3.02
2613 5602 3.340034 CTGACGGTCTCTCTACTTGAGT 58.660 50.000 9.88 0.00 43.13 3.41
2614 5603 3.336468 TGACGGTCTCTCTACTTGAGTC 58.664 50.000 9.88 0.00 43.13 3.36
2615 5604 2.679336 GACGGTCTCTCTACTTGAGTCC 59.321 54.545 0.00 0.00 43.13 3.85
2616 5605 2.040012 ACGGTCTCTCTACTTGAGTCCA 59.960 50.000 0.00 0.00 43.13 4.02
2617 5606 2.420722 CGGTCTCTCTACTTGAGTCCAC 59.579 54.545 0.00 0.00 43.13 4.02
2618 5607 3.422796 GGTCTCTCTACTTGAGTCCACA 58.577 50.000 0.00 0.00 43.13 4.17
2619 5608 3.191791 GGTCTCTCTACTTGAGTCCACAC 59.808 52.174 0.00 0.00 43.13 3.82
2620 5609 4.076394 GTCTCTCTACTTGAGTCCACACT 58.924 47.826 0.00 0.00 43.13 3.55
2628 5617 3.059287 GAGTCCACACTCCACCTCT 57.941 57.895 0.00 0.00 43.14 3.69
2629 5618 1.343069 GAGTCCACACTCCACCTCTT 58.657 55.000 0.00 0.00 43.14 2.85
2630 5619 1.001406 GAGTCCACACTCCACCTCTTG 59.999 57.143 0.00 0.00 43.14 3.02
2631 5620 0.759346 GTCCACACTCCACCTCTTGT 59.241 55.000 0.00 0.00 0.00 3.16
2632 5621 1.141053 GTCCACACTCCACCTCTTGTT 59.859 52.381 0.00 0.00 0.00 2.83
2633 5622 1.140852 TCCACACTCCACCTCTTGTTG 59.859 52.381 0.00 0.00 0.00 3.33
2634 5623 1.140852 CCACACTCCACCTCTTGTTGA 59.859 52.381 0.00 0.00 0.00 3.18
2635 5624 2.421388 CCACACTCCACCTCTTGTTGAA 60.421 50.000 0.00 0.00 0.00 2.69
2636 5625 2.874701 CACACTCCACCTCTTGTTGAAG 59.125 50.000 0.00 0.00 0.00 3.02
2637 5626 1.876156 CACTCCACCTCTTGTTGAAGC 59.124 52.381 0.00 0.00 0.00 3.86
2638 5627 1.490490 ACTCCACCTCTTGTTGAAGCA 59.510 47.619 0.00 0.00 0.00 3.91
2639 5628 2.092429 ACTCCACCTCTTGTTGAAGCAA 60.092 45.455 0.00 0.00 0.00 3.91
2640 5629 2.951642 CTCCACCTCTTGTTGAAGCAAA 59.048 45.455 0.00 0.00 0.00 3.68
2641 5630 3.565307 TCCACCTCTTGTTGAAGCAAAT 58.435 40.909 0.00 0.00 0.00 2.32
2642 5631 3.569701 TCCACCTCTTGTTGAAGCAAATC 59.430 43.478 0.00 0.00 0.00 2.17
2643 5632 3.318839 CCACCTCTTGTTGAAGCAAATCA 59.681 43.478 0.00 0.00 0.00 2.57
2644 5633 4.202141 CCACCTCTTGTTGAAGCAAATCAA 60.202 41.667 0.00 0.00 36.99 2.57
2645 5634 5.350633 CACCTCTTGTTGAAGCAAATCAAA 58.649 37.500 1.78 0.00 40.76 2.69
2646 5635 5.811613 CACCTCTTGTTGAAGCAAATCAAAA 59.188 36.000 1.78 0.00 40.76 2.44
2647 5636 6.480981 CACCTCTTGTTGAAGCAAATCAAAAT 59.519 34.615 1.78 0.00 40.76 1.82
2648 5637 6.480981 ACCTCTTGTTGAAGCAAATCAAAATG 59.519 34.615 1.78 0.58 40.76 2.32
2649 5638 6.289745 TCTTGTTGAAGCAAATCAAAATGC 57.710 33.333 1.78 0.00 40.76 3.56
2650 5639 5.236911 TCTTGTTGAAGCAAATCAAAATGCC 59.763 36.000 1.78 0.00 43.57 4.40
2651 5640 4.706035 TGTTGAAGCAAATCAAAATGCCT 58.294 34.783 1.78 0.00 43.57 4.75
2652 5641 5.851720 TGTTGAAGCAAATCAAAATGCCTA 58.148 33.333 1.78 0.00 43.57 3.93
2653 5642 6.286758 TGTTGAAGCAAATCAAAATGCCTAA 58.713 32.000 1.78 0.00 43.57 2.69
2654 5643 6.765036 TGTTGAAGCAAATCAAAATGCCTAAA 59.235 30.769 1.78 0.00 43.57 1.85
2655 5644 6.783892 TGAAGCAAATCAAAATGCCTAAAC 57.216 33.333 0.00 0.00 43.57 2.01
2656 5645 6.286758 TGAAGCAAATCAAAATGCCTAAACA 58.713 32.000 0.00 0.00 43.57 2.83
2657 5646 6.765036 TGAAGCAAATCAAAATGCCTAAACAA 59.235 30.769 0.00 0.00 43.57 2.83
2658 5647 7.444792 TGAAGCAAATCAAAATGCCTAAACAAT 59.555 29.630 0.00 0.00 43.57 2.71
2659 5648 7.368480 AGCAAATCAAAATGCCTAAACAATC 57.632 32.000 0.00 0.00 43.57 2.67
2660 5649 7.163441 AGCAAATCAAAATGCCTAAACAATCT 58.837 30.769 0.00 0.00 43.57 2.40
2661 5650 7.332678 AGCAAATCAAAATGCCTAAACAATCTC 59.667 33.333 0.00 0.00 43.57 2.75
2662 5651 7.332678 GCAAATCAAAATGCCTAAACAATCTCT 59.667 33.333 0.00 0.00 36.56 3.10
2663 5652 9.211485 CAAATCAAAATGCCTAAACAATCTCTT 57.789 29.630 0.00 0.00 0.00 2.85
2664 5653 8.767478 AATCAAAATGCCTAAACAATCTCTTG 57.233 30.769 0.00 0.00 38.39 3.02
2675 5664 3.565307 ACAATCTCTTGTTTCCAAGGCA 58.435 40.909 2.88 0.00 46.65 4.75
2676 5665 4.154942 ACAATCTCTTGTTTCCAAGGCAT 58.845 39.130 2.88 0.00 46.65 4.40
2677 5666 4.590222 ACAATCTCTTGTTTCCAAGGCATT 59.410 37.500 2.88 0.00 46.65 3.56
2678 5667 5.070847 ACAATCTCTTGTTTCCAAGGCATTT 59.929 36.000 2.88 0.00 46.65 2.32
2679 5668 4.853924 TCTCTTGTTTCCAAGGCATTTC 57.146 40.909 2.88 0.00 46.65 2.17
2680 5669 4.214310 TCTCTTGTTTCCAAGGCATTTCA 58.786 39.130 2.88 0.00 46.65 2.69
2681 5670 4.037923 TCTCTTGTTTCCAAGGCATTTCAC 59.962 41.667 2.88 0.00 46.65 3.18
2682 5671 3.703556 TCTTGTTTCCAAGGCATTTCACA 59.296 39.130 2.88 0.00 46.65 3.58
2683 5672 4.161189 TCTTGTTTCCAAGGCATTTCACAA 59.839 37.500 2.88 0.00 46.65 3.33
2684 5673 4.057406 TGTTTCCAAGGCATTTCACAAG 57.943 40.909 0.00 0.00 0.00 3.16
2685 5674 3.703556 TGTTTCCAAGGCATTTCACAAGA 59.296 39.130 0.00 0.00 0.00 3.02
2686 5675 4.161189 TGTTTCCAAGGCATTTCACAAGAA 59.839 37.500 0.00 0.00 0.00 2.52
2687 5676 5.115480 GTTTCCAAGGCATTTCACAAGAAA 58.885 37.500 0.00 0.00 46.90 2.52
2688 5677 5.350504 TTCCAAGGCATTTCACAAGAAAA 57.649 34.783 0.00 0.00 46.06 2.29
2689 5678 5.350504 TCCAAGGCATTTCACAAGAAAAA 57.649 34.783 0.00 0.00 46.06 1.94
2690 5679 5.358922 TCCAAGGCATTTCACAAGAAAAAG 58.641 37.500 0.00 0.00 46.06 2.27
2691 5680 4.512571 CCAAGGCATTTCACAAGAAAAAGG 59.487 41.667 0.00 0.00 46.06 3.11
2692 5681 3.732212 AGGCATTTCACAAGAAAAAGGC 58.268 40.909 10.27 10.27 46.06 4.35
2693 5682 3.134442 AGGCATTTCACAAGAAAAAGGCA 59.866 39.130 16.46 0.00 46.06 4.75
2694 5683 3.495753 GGCATTTCACAAGAAAAAGGCAG 59.504 43.478 6.78 0.00 46.06 4.85
2695 5684 3.059393 GCATTTCACAAGAAAAAGGCAGC 60.059 43.478 0.24 0.00 46.06 5.25
2696 5685 4.374399 CATTTCACAAGAAAAAGGCAGCT 58.626 39.130 0.00 0.00 46.06 4.24
2697 5686 5.531634 CATTTCACAAGAAAAAGGCAGCTA 58.468 37.500 0.00 0.00 46.06 3.32
2698 5687 5.789643 TTTCACAAGAAAAAGGCAGCTAT 57.210 34.783 0.00 0.00 40.61 2.97
2699 5688 5.789643 TTCACAAGAAAAAGGCAGCTATT 57.210 34.783 0.00 0.00 0.00 1.73
2700 5689 5.789643 TCACAAGAAAAAGGCAGCTATTT 57.210 34.783 0.00 0.00 0.00 1.40
2701 5690 6.160576 TCACAAGAAAAAGGCAGCTATTTT 57.839 33.333 7.99 7.99 0.00 1.82
2702 5691 6.581712 TCACAAGAAAAAGGCAGCTATTTTT 58.418 32.000 16.63 16.63 40.37 1.94
2703 5692 6.479660 TCACAAGAAAAAGGCAGCTATTTTTG 59.520 34.615 19.78 12.79 38.40 2.44
2704 5693 6.479660 CACAAGAAAAAGGCAGCTATTTTTGA 59.520 34.615 19.78 0.00 38.40 2.69
2705 5694 6.703165 ACAAGAAAAAGGCAGCTATTTTTGAG 59.297 34.615 19.78 13.57 38.40 3.02
2706 5695 5.787380 AGAAAAAGGCAGCTATTTTTGAGG 58.213 37.500 19.78 0.00 38.40 3.86
2707 5696 5.539955 AGAAAAAGGCAGCTATTTTTGAGGA 59.460 36.000 19.78 0.00 38.40 3.71
2708 5697 5.397142 AAAAGGCAGCTATTTTTGAGGAG 57.603 39.130 0.00 0.00 0.00 3.69
2709 5698 3.010200 AGGCAGCTATTTTTGAGGAGG 57.990 47.619 0.00 0.00 0.00 4.30
2710 5699 2.578021 AGGCAGCTATTTTTGAGGAGGA 59.422 45.455 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 5.244178 CCTACCTAACCTATTTCAGCGATCT 59.756 44.000 0.00 0.00 0.00 2.75
76 77 2.892374 ACCTTGTTGCTTCTTTGTTGC 58.108 42.857 0.00 0.00 0.00 4.17
210 211 5.049818 CCGGAATGATCTTTAGTTGAGCATC 60.050 44.000 0.00 0.00 39.27 3.91
285 286 7.651704 ACATTGTACATAAGCAAAACCTTGTTC 59.348 33.333 0.00 0.00 34.79 3.18
349 350 5.331902 CAAAATCGTGCCGTAAATCATCTT 58.668 37.500 0.00 0.00 0.00 2.40
404 405 5.690997 TGTACCGACAAATTTGCAATGTA 57.309 34.783 18.12 11.21 30.68 2.29
459 460 6.588719 TCAACATATTGTCCCCTTCTTTTG 57.411 37.500 0.00 0.00 37.11 2.44
527 528 1.250154 GCTGGCATGTTTAGGTGGCA 61.250 55.000 0.00 1.72 46.84 4.92
591 592 2.159324 TGTGTTTTTGCTTGCATCGTCA 60.159 40.909 0.00 0.00 0.00 4.35
717 718 2.815308 CGCTGGCTATCTTCCCGT 59.185 61.111 0.00 0.00 0.00 5.28
747 748 2.570442 AGCTGTCTAACTCTTAGCGC 57.430 50.000 0.00 0.00 39.27 5.92
786 787 1.280421 GGTTCTTGATCTGGGAGCAGT 59.720 52.381 0.00 0.00 0.00 4.40
863 864 1.601166 TGGATGTGATGCAGCATAGC 58.399 50.000 8.41 8.49 34.68 2.97
922 923 4.823989 AGGAAAGATCAAGTGTTGTCTTGG 59.176 41.667 0.00 0.00 43.25 3.61
937 938 3.517500 GTGAGGACTTGAGGAGGAAAGAT 59.482 47.826 0.00 0.00 0.00 2.40
1376 2840 1.345741 CAGCCTTCTTCACCAGTCTGA 59.654 52.381 0.00 0.00 0.00 3.27
1434 2898 1.750193 TTCCGCAATCCATCTTGTCC 58.250 50.000 0.00 0.00 0.00 4.02
1442 2906 0.327924 ACTGACCATTCCGCAATCCA 59.672 50.000 0.00 0.00 0.00 3.41
1524 2988 3.829886 TTAGGCACTTCGATTTGCTTG 57.170 42.857 15.98 0.00 41.75 4.01
1653 3123 4.523083 TCTGGATTAATTTCCGGAACAGG 58.477 43.478 18.64 4.43 46.04 4.00
1718 3188 3.827008 TGATATGAGTGACAAGGCTCC 57.173 47.619 0.00 0.00 0.00 4.70
1760 3230 0.107459 GTGAGATTGGCCAGTCCTCC 60.107 60.000 23.53 13.88 35.26 4.30
1768 3238 1.482182 GGGGAAAATGTGAGATTGGCC 59.518 52.381 0.00 0.00 0.00 5.36
1819 3297 7.983307 TCAAAATTTGGGATTTGTTTCTGTTG 58.017 30.769 5.83 0.00 37.68 3.33
1820 3298 8.750515 ATCAAAATTTGGGATTTGTTTCTGTT 57.249 26.923 5.83 0.00 37.68 3.16
1875 3354 8.497745 AGGATCTGAACCAAACTATTATGACAT 58.502 33.333 6.74 0.00 0.00 3.06
1894 3373 5.826737 ACAAGATCAGGCAAATAAGGATCTG 59.173 40.000 0.00 0.00 42.73 2.90
1898 3377 6.690530 CAAAACAAGATCAGGCAAATAAGGA 58.309 36.000 0.00 0.00 0.00 3.36
1903 3382 3.243839 ACGCAAAACAAGATCAGGCAAAT 60.244 39.130 0.00 0.00 0.00 2.32
1910 3389 5.878332 ATCATGTACGCAAAACAAGATCA 57.122 34.783 0.00 0.00 31.54 2.92
1930 3409 4.937620 TCTGACTTCAAACTGGCATGTATC 59.062 41.667 0.00 0.00 0.00 2.24
1943 3422 9.651913 AAAAATACAAGCTTTTTCTGACTTCAA 57.348 25.926 0.00 0.00 31.87 2.69
1944 3423 9.301153 GAAAAATACAAGCTTTTTCTGACTTCA 57.699 29.630 11.58 0.00 43.94 3.02
1995 3474 4.596585 GTGTGTGGGTGGGGTGGG 62.597 72.222 0.00 0.00 0.00 4.61
1996 3475 3.814906 TGTGTGTGGGTGGGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
1997 3476 2.518349 GTGTGTGTGGGTGGGGTG 60.518 66.667 0.00 0.00 0.00 4.61
1998 3477 2.156496 TTTGTGTGTGTGGGTGGGGT 62.156 55.000 0.00 0.00 0.00 4.95
1999 3478 0.972983 TTTTGTGTGTGTGGGTGGGG 60.973 55.000 0.00 0.00 0.00 4.96
2000 3479 0.898320 TTTTTGTGTGTGTGGGTGGG 59.102 50.000 0.00 0.00 0.00 4.61
2126 3610 8.000709 AGCTTCAATACCCAGATATTGATTTCA 58.999 33.333 8.58 0.00 46.12 2.69
2127 3611 8.401490 AGCTTCAATACCCAGATATTGATTTC 57.599 34.615 8.58 3.05 46.12 2.17
2200 4970 8.592809 AGCTCCATTTCAAATTACACCATTTTA 58.407 29.630 0.00 0.00 0.00 1.52
2241 5011 3.583882 GATGGGTGGTGGTGGTGGG 62.584 68.421 0.00 0.00 0.00 4.61
2242 5012 2.035626 GATGGGTGGTGGTGGTGG 59.964 66.667 0.00 0.00 0.00 4.61
2243 5013 1.303561 CAGATGGGTGGTGGTGGTG 60.304 63.158 0.00 0.00 0.00 4.17
2244 5014 3.170362 CAGATGGGTGGTGGTGGT 58.830 61.111 0.00 0.00 0.00 4.16
2245 5015 2.361610 GCAGATGGGTGGTGGTGG 60.362 66.667 0.00 0.00 0.00 4.61
2246 5016 1.000521 ATGCAGATGGGTGGTGGTG 60.001 57.895 0.00 0.00 0.00 4.17
2247 5017 1.000521 CATGCAGATGGGTGGTGGT 60.001 57.895 0.00 0.00 0.00 4.16
2248 5018 1.000521 ACATGCAGATGGGTGGTGG 60.001 57.895 0.00 0.00 33.39 4.61
2249 5019 0.322726 TCACATGCAGATGGGTGGTG 60.323 55.000 0.00 0.00 34.24 4.17
2250 5020 0.034767 CTCACATGCAGATGGGTGGT 60.035 55.000 0.00 0.00 34.24 4.16
2251 5021 0.750546 CCTCACATGCAGATGGGTGG 60.751 60.000 0.00 0.00 39.65 4.61
2252 5022 1.381928 GCCTCACATGCAGATGGGTG 61.382 60.000 0.00 0.00 34.24 4.61
2253 5023 1.077212 GCCTCACATGCAGATGGGT 60.077 57.895 0.00 0.00 34.24 4.51
2254 5024 1.826921 GGCCTCACATGCAGATGGG 60.827 63.158 0.00 0.00 33.82 4.00
2255 5025 0.395311 AAGGCCTCACATGCAGATGG 60.395 55.000 5.23 0.00 33.39 3.51
2256 5026 1.134367 CAAAGGCCTCACATGCAGATG 59.866 52.381 5.23 0.00 35.49 2.90
2257 5027 1.471119 CAAAGGCCTCACATGCAGAT 58.529 50.000 5.23 0.00 0.00 2.90
2258 5028 1.246056 GCAAAGGCCTCACATGCAGA 61.246 55.000 21.23 0.00 37.00 4.26
2259 5029 1.214589 GCAAAGGCCTCACATGCAG 59.785 57.895 21.23 3.10 37.00 4.41
2260 5030 1.531128 TGCAAAGGCCTCACATGCA 60.531 52.632 23.62 23.62 44.07 3.96
2261 5031 0.179119 GATGCAAAGGCCTCACATGC 60.179 55.000 20.02 20.02 40.13 4.06
2262 5032 0.099968 CGATGCAAAGGCCTCACATG 59.900 55.000 17.23 10.68 40.13 3.21
2263 5033 1.660560 GCGATGCAAAGGCCTCACAT 61.661 55.000 5.23 10.55 40.13 3.21
2264 5034 2.334946 GCGATGCAAAGGCCTCACA 61.335 57.895 5.23 5.04 40.13 3.58
2265 5035 1.986575 GAGCGATGCAAAGGCCTCAC 61.987 60.000 5.23 0.00 40.13 3.51
2266 5036 1.746615 GAGCGATGCAAAGGCCTCA 60.747 57.895 5.23 0.00 40.13 3.86
2267 5037 2.476320 GGAGCGATGCAAAGGCCTC 61.476 63.158 5.23 0.00 40.13 4.70
2268 5038 2.439156 GGAGCGATGCAAAGGCCT 60.439 61.111 0.00 0.00 40.13 5.19
2269 5039 3.521796 GGGAGCGATGCAAAGGCC 61.522 66.667 0.00 0.00 40.13 5.19
2270 5040 1.598701 AAAGGGAGCGATGCAAAGGC 61.599 55.000 0.00 0.00 41.68 4.35
2271 5041 0.171903 CAAAGGGAGCGATGCAAAGG 59.828 55.000 0.00 0.00 0.00 3.11
2272 5042 0.171903 CCAAAGGGAGCGATGCAAAG 59.828 55.000 0.00 0.00 35.59 2.77
2273 5043 2.266070 CCAAAGGGAGCGATGCAAA 58.734 52.632 0.00 0.00 35.59 3.68
2274 5044 4.001248 CCAAAGGGAGCGATGCAA 57.999 55.556 0.00 0.00 35.59 4.08
2321 5310 3.013932 AAGGGAGGGGCTGCTGAG 61.014 66.667 0.00 0.00 0.00 3.35
2322 5311 3.333219 CAAGGGAGGGGCTGCTGA 61.333 66.667 0.00 0.00 0.00 4.26
2363 5352 0.861837 GTCTGTTGCTGGACGTTGAG 59.138 55.000 0.00 0.00 0.00 3.02
2364 5353 0.464036 AGTCTGTTGCTGGACGTTGA 59.536 50.000 0.00 0.00 37.52 3.18
2365 5354 0.861837 GAGTCTGTTGCTGGACGTTG 59.138 55.000 0.00 0.00 37.52 4.10
2366 5355 0.464036 TGAGTCTGTTGCTGGACGTT 59.536 50.000 0.00 0.00 37.52 3.99
2367 5356 0.032678 CTGAGTCTGTTGCTGGACGT 59.967 55.000 0.00 0.00 37.52 4.34
2368 5357 1.287730 GCTGAGTCTGTTGCTGGACG 61.288 60.000 0.00 0.00 37.52 4.79
2369 5358 0.952984 GGCTGAGTCTGTTGCTGGAC 60.953 60.000 0.00 0.00 0.00 4.02
2370 5359 1.372683 GGCTGAGTCTGTTGCTGGA 59.627 57.895 0.00 0.00 0.00 3.86
2371 5360 1.071987 TGGCTGAGTCTGTTGCTGG 59.928 57.895 0.00 0.00 0.00 4.85
2419 5408 1.406539 GAGCAATCGCATTCCCATGTT 59.593 47.619 0.00 0.00 42.27 2.71
2431 5420 1.827578 TTCGTCGAGATGAGCAATCG 58.172 50.000 0.00 0.00 40.54 3.34
2456 5445 7.711846 TGTGTTCAGTACAGTTTTTAATGCAT 58.288 30.769 0.00 0.00 37.45 3.96
2502 5491 4.680237 CTGGCAGCGGTGGAACGA 62.680 66.667 17.54 0.00 38.12 3.85
2504 5493 4.643387 ACCTGGCAGCGGTGGAAC 62.643 66.667 17.54 0.00 32.41 3.62
2505 5494 4.329545 GACCTGGCAGCGGTGGAA 62.330 66.667 17.54 0.00 34.19 3.53
2545 5534 3.605726 ATCATGCCATTTCATCTCCCA 57.394 42.857 0.00 0.00 0.00 4.37
2575 5564 3.706373 GCTCCCTCGCCTTGGTCA 61.706 66.667 0.00 0.00 0.00 4.02
2576 5565 3.394836 AGCTCCCTCGCCTTGGTC 61.395 66.667 0.00 0.00 0.00 4.02
2577 5566 3.710722 CAGCTCCCTCGCCTTGGT 61.711 66.667 0.00 0.00 0.00 3.67
2578 5567 3.393970 TCAGCTCCCTCGCCTTGG 61.394 66.667 0.00 0.00 0.00 3.61
2579 5568 2.125350 GTCAGCTCCCTCGCCTTG 60.125 66.667 0.00 0.00 0.00 3.61
2580 5569 3.764466 CGTCAGCTCCCTCGCCTT 61.764 66.667 0.00 0.00 0.00 4.35
2583 5572 4.500116 GACCGTCAGCTCCCTCGC 62.500 72.222 0.00 0.00 0.00 5.03
2584 5573 2.752238 AGACCGTCAGCTCCCTCG 60.752 66.667 0.40 0.00 0.00 4.63
2585 5574 1.379309 AGAGACCGTCAGCTCCCTC 60.379 63.158 0.40 0.00 0.00 4.30
2586 5575 1.379309 GAGAGACCGTCAGCTCCCT 60.379 63.158 0.40 0.00 0.00 4.20
2587 5576 0.107116 TAGAGAGACCGTCAGCTCCC 60.107 60.000 14.38 0.00 0.00 4.30
2588 5577 1.018910 GTAGAGAGACCGTCAGCTCC 58.981 60.000 14.38 1.83 0.00 4.70
2589 5578 2.032680 AGTAGAGAGACCGTCAGCTC 57.967 55.000 11.48 11.48 0.00 4.09
2590 5579 2.088423 CAAGTAGAGAGACCGTCAGCT 58.912 52.381 0.40 0.00 0.00 4.24
2591 5580 2.085320 TCAAGTAGAGAGACCGTCAGC 58.915 52.381 0.40 0.00 0.00 4.26
2611 5600 1.051812 CAAGAGGTGGAGTGTGGACT 58.948 55.000 0.00 0.00 33.98 3.85
2612 5601 0.759346 ACAAGAGGTGGAGTGTGGAC 59.241 55.000 0.00 0.00 0.00 4.02
2613 5602 1.140852 CAACAAGAGGTGGAGTGTGGA 59.859 52.381 0.00 0.00 0.00 4.02
2614 5603 1.140852 TCAACAAGAGGTGGAGTGTGG 59.859 52.381 0.00 0.00 0.00 4.17
2615 5604 2.620251 TCAACAAGAGGTGGAGTGTG 57.380 50.000 0.00 0.00 0.00 3.82
2616 5605 2.746472 GCTTCAACAAGAGGTGGAGTGT 60.746 50.000 0.00 0.00 29.04 3.55
2617 5606 1.876156 GCTTCAACAAGAGGTGGAGTG 59.124 52.381 0.00 0.00 29.04 3.51
2618 5607 1.490490 TGCTTCAACAAGAGGTGGAGT 59.510 47.619 0.00 0.00 29.04 3.85
2619 5608 2.260844 TGCTTCAACAAGAGGTGGAG 57.739 50.000 0.00 0.00 29.04 3.86
2620 5609 2.727123 TTGCTTCAACAAGAGGTGGA 57.273 45.000 0.00 0.00 0.00 4.02
2621 5610 3.318839 TGATTTGCTTCAACAAGAGGTGG 59.681 43.478 0.00 0.00 0.00 4.61
2622 5611 4.572985 TGATTTGCTTCAACAAGAGGTG 57.427 40.909 0.00 0.00 0.00 4.00
2623 5612 5.596836 TTTGATTTGCTTCAACAAGAGGT 57.403 34.783 0.00 0.00 35.42 3.85
2624 5613 6.565247 GCATTTTGATTTGCTTCAACAAGAGG 60.565 38.462 0.00 0.00 35.42 3.69
2625 5614 6.360329 GCATTTTGATTTGCTTCAACAAGAG 58.640 36.000 0.00 0.00 35.42 2.85
2626 5615 5.236911 GGCATTTTGATTTGCTTCAACAAGA 59.763 36.000 0.00 0.00 38.88 3.02
2627 5616 5.237779 AGGCATTTTGATTTGCTTCAACAAG 59.762 36.000 0.00 0.00 38.88 3.16
2628 5617 5.124645 AGGCATTTTGATTTGCTTCAACAA 58.875 33.333 0.00 0.00 38.88 2.83
2629 5618 4.706035 AGGCATTTTGATTTGCTTCAACA 58.294 34.783 0.00 0.00 38.88 3.33
2630 5619 6.783892 TTAGGCATTTTGATTTGCTTCAAC 57.216 33.333 0.00 0.00 38.88 3.18
2631 5620 6.765036 TGTTTAGGCATTTTGATTTGCTTCAA 59.235 30.769 0.00 0.00 38.88 2.69
2632 5621 6.286758 TGTTTAGGCATTTTGATTTGCTTCA 58.713 32.000 0.00 0.00 38.88 3.02
2633 5622 6.783892 TGTTTAGGCATTTTGATTTGCTTC 57.216 33.333 0.00 0.00 38.88 3.86
2634 5623 7.662669 AGATTGTTTAGGCATTTTGATTTGCTT 59.337 29.630 0.00 0.00 38.88 3.91
2635 5624 7.163441 AGATTGTTTAGGCATTTTGATTTGCT 58.837 30.769 0.00 0.00 38.88 3.91
2636 5625 7.332678 AGAGATTGTTTAGGCATTTTGATTTGC 59.667 33.333 0.00 0.00 38.14 3.68
2637 5626 8.767478 AGAGATTGTTTAGGCATTTTGATTTG 57.233 30.769 0.00 0.00 0.00 2.32
2638 5627 9.211485 CAAGAGATTGTTTAGGCATTTTGATTT 57.789 29.630 0.00 0.00 0.00 2.17
2639 5628 8.370182 ACAAGAGATTGTTTAGGCATTTTGATT 58.630 29.630 0.00 0.00 0.00 2.57
2640 5629 7.899973 ACAAGAGATTGTTTAGGCATTTTGAT 58.100 30.769 0.00 0.00 0.00 2.57
2641 5630 7.288810 ACAAGAGATTGTTTAGGCATTTTGA 57.711 32.000 0.00 0.00 0.00 2.69
2642 5631 7.951530 AACAAGAGATTGTTTAGGCATTTTG 57.048 32.000 0.65 0.00 41.95 2.44
2662 5651 6.798676 TTTCTTGTGAAATGCCTTGGAAACAA 60.799 34.615 0.00 0.00 41.55 2.83
2663 5652 3.703556 TCTTGTGAAATGCCTTGGAAACA 59.296 39.130 0.00 0.00 39.83 2.83
2664 5653 4.320608 TCTTGTGAAATGCCTTGGAAAC 57.679 40.909 0.00 0.00 0.00 2.78
2665 5654 5.350504 TTTCTTGTGAAATGCCTTGGAAA 57.649 34.783 0.00 0.00 37.27 3.13
2666 5655 5.350504 TTTTCTTGTGAAATGCCTTGGAA 57.649 34.783 0.00 0.00 41.24 3.53
2667 5656 5.350504 TTTTTCTTGTGAAATGCCTTGGA 57.649 34.783 0.00 0.00 41.24 3.53
2668 5657 4.512571 CCTTTTTCTTGTGAAATGCCTTGG 59.487 41.667 0.00 0.00 41.24 3.61
2669 5658 4.024641 GCCTTTTTCTTGTGAAATGCCTTG 60.025 41.667 0.00 0.00 41.24 3.61
2670 5659 4.129380 GCCTTTTTCTTGTGAAATGCCTT 58.871 39.130 0.00 0.00 41.24 4.35
2671 5660 3.134442 TGCCTTTTTCTTGTGAAATGCCT 59.866 39.130 0.00 0.00 41.24 4.75
2672 5661 3.465871 TGCCTTTTTCTTGTGAAATGCC 58.534 40.909 0.00 0.00 41.24 4.40
2673 5662 3.059393 GCTGCCTTTTTCTTGTGAAATGC 60.059 43.478 0.00 0.00 41.24 3.56
2674 5663 4.374399 AGCTGCCTTTTTCTTGTGAAATG 58.626 39.130 0.00 0.00 41.24 2.32
2675 5664 4.677673 AGCTGCCTTTTTCTTGTGAAAT 57.322 36.364 0.00 0.00 41.24 2.17
2676 5665 5.789643 ATAGCTGCCTTTTTCTTGTGAAA 57.210 34.783 0.00 0.00 40.08 2.69
2677 5666 5.789643 AATAGCTGCCTTTTTCTTGTGAA 57.210 34.783 0.00 0.00 0.00 3.18
2678 5667 5.789643 AAATAGCTGCCTTTTTCTTGTGA 57.210 34.783 0.00 0.00 0.00 3.58
2679 5668 6.479660 TCAAAAATAGCTGCCTTTTTCTTGTG 59.520 34.615 15.99 9.17 33.49 3.33
2680 5669 6.581712 TCAAAAATAGCTGCCTTTTTCTTGT 58.418 32.000 15.99 0.00 33.49 3.16
2681 5670 6.146673 CCTCAAAAATAGCTGCCTTTTTCTTG 59.853 38.462 15.99 9.93 33.49 3.02
2682 5671 6.041979 TCCTCAAAAATAGCTGCCTTTTTCTT 59.958 34.615 15.99 0.31 33.49 2.52
2683 5672 5.539955 TCCTCAAAAATAGCTGCCTTTTTCT 59.460 36.000 15.99 0.45 33.49 2.52
2684 5673 5.783111 TCCTCAAAAATAGCTGCCTTTTTC 58.217 37.500 15.99 0.00 33.49 2.29
2685 5674 5.279657 CCTCCTCAAAAATAGCTGCCTTTTT 60.280 40.000 14.09 14.09 35.51 1.94
2686 5675 4.221482 CCTCCTCAAAAATAGCTGCCTTTT 59.779 41.667 0.00 0.14 0.00 2.27
2687 5676 3.766051 CCTCCTCAAAAATAGCTGCCTTT 59.234 43.478 0.00 0.00 0.00 3.11
2688 5677 3.010584 TCCTCCTCAAAAATAGCTGCCTT 59.989 43.478 0.00 0.00 0.00 4.35
2689 5678 2.578021 TCCTCCTCAAAAATAGCTGCCT 59.422 45.455 0.00 0.00 0.00 4.75
2690 5679 3.004752 TCCTCCTCAAAAATAGCTGCC 57.995 47.619 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.