Multiple sequence alignment - TraesCS7B01G170800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G170800 chr7B 100.000 4065 0 0 1 4065 242988962 242984898 0.000000e+00 7507.0
1 TraesCS7B01G170800 chr7B 76.241 282 63 4 1300 1579 169433384 169433663 3.270000e-31 147.0
2 TraesCS7B01G170800 chr7B 75.265 283 64 6 1300 1579 32408652 32408931 3.300000e-26 130.0
3 TraesCS7B01G170800 chr7D 93.305 1180 37 17 941 2112 263506620 263505475 0.000000e+00 1703.0
4 TraesCS7B01G170800 chr7D 90.931 1268 49 28 2114 3339 263505427 263504184 0.000000e+00 1644.0
5 TraesCS7B01G170800 chr7D 92.617 298 9 5 655 943 263506951 263506658 2.260000e-112 416.0
6 TraesCS7B01G170800 chr7D 94.702 151 5 1 499 649 263507274 263507127 8.790000e-57 231.0
7 TraesCS7B01G170800 chr7D 75.887 282 64 4 1300 1579 205132078 205132357 1.520000e-29 141.0
8 TraesCS7B01G170800 chr7D 74.238 361 69 19 1300 1648 82899322 82899670 3.300000e-26 130.0
9 TraesCS7B01G170800 chr7A 93.605 1032 38 7 941 1966 286225576 286224567 0.000000e+00 1515.0
10 TraesCS7B01G170800 chr7A 92.520 976 44 12 1998 2963 286224581 286223625 0.000000e+00 1371.0
11 TraesCS7B01G170800 chr7A 91.438 292 12 9 2981 3268 286223562 286223280 4.930000e-104 388.0
12 TraesCS7B01G170800 chr7A 86.574 216 7 3 728 943 286225807 286225614 6.840000e-53 219.0
13 TraesCS7B01G170800 chr7A 94.326 141 8 0 499 639 286244281 286244141 2.460000e-52 217.0
14 TraesCS7B01G170800 chr7A 86.755 151 20 0 117 267 27257554 27257704 6.990000e-38 169.0
15 TraesCS7B01G170800 chr7A 85.000 160 22 1 116 273 39669313 39669154 1.170000e-35 161.0
16 TraesCS7B01G170800 chr7A 76.950 282 61 4 1300 1579 217202990 217203269 1.510000e-34 158.0
17 TraesCS7B01G170800 chr2A 85.813 578 66 8 3499 4065 528441123 528440551 2.090000e-167 599.0
18 TraesCS7B01G170800 chr2A 86.755 151 20 0 116 266 731068999 731068849 6.990000e-38 169.0
19 TraesCS7B01G170800 chr2A 75.789 285 55 13 1300 1577 213113824 213113547 9.170000e-27 132.0
20 TraesCS7B01G170800 chr2A 87.500 72 9 0 389 460 9108618 9108547 2.600000e-12 84.2
21 TraesCS7B01G170800 chr2B 85.467 578 68 8 3499 4065 733969564 733970136 4.530000e-164 588.0
22 TraesCS7B01G170800 chr2B 87.013 154 19 1 116 269 737691593 737691745 5.400000e-39 172.0
23 TraesCS7B01G170800 chr2B 75.000 288 52 17 1300 1577 254288454 254288177 9.230000e-22 115.0
24 TraesCS7B01G170800 chr6B 83.103 580 74 16 3499 4064 182644584 182644015 1.300000e-139 507.0
25 TraesCS7B01G170800 chr6B 77.676 327 65 8 1264 1586 705473719 705474041 4.150000e-45 193.0
26 TraesCS7B01G170800 chr6B 86.755 151 19 1 116 266 153942684 153942535 2.510000e-37 167.0
27 TraesCS7B01G170800 chr6B 76.923 286 60 6 1301 1583 705491237 705491519 1.510000e-34 158.0
28 TraesCS7B01G170800 chr6B 87.324 71 7 2 391 460 415874829 415874760 3.370000e-11 80.5
29 TraesCS7B01G170800 chr6B 79.130 115 20 2 390 500 487832391 487832277 4.360000e-10 76.8
30 TraesCS7B01G170800 chr6D 77.676 327 65 8 1264 1586 462635784 462635462 4.150000e-45 193.0
31 TraesCS7B01G170800 chr6D 85.256 156 23 0 116 271 346459676 346459521 1.170000e-35 161.0
32 TraesCS7B01G170800 chr1D 86.842 152 18 1 117 268 75906571 75906422 6.990000e-38 169.0
33 TraesCS7B01G170800 chr1D 86.275 153 20 1 116 267 339361960 339362112 9.040000e-37 165.0
34 TraesCS7B01G170800 chr1D 86.486 74 9 1 387 460 434392929 434393001 3.370000e-11 80.5
35 TraesCS7B01G170800 chr1D 84.615 78 10 2 384 460 159982727 159982803 4.360000e-10 76.8
36 TraesCS7B01G170800 chr1A 85.185 162 24 0 116 277 6911105 6910944 2.510000e-37 167.0
37 TraesCS7B01G170800 chr2D 75.789 285 55 13 1300 1577 196860087 196859810 9.170000e-27 132.0
38 TraesCS7B01G170800 chr4B 87.179 78 10 0 383 460 21543543 21543466 5.600000e-14 89.8
39 TraesCS7B01G170800 chr4B 88.158 76 7 2 386 460 22806851 22806777 5.600000e-14 89.8
40 TraesCS7B01G170800 chr5B 84.706 85 12 1 376 459 197470280 197470364 2.600000e-12 84.2
41 TraesCS7B01G170800 chr4A 86.486 74 9 1 387 460 638519305 638519377 3.370000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G170800 chr7B 242984898 242988962 4064 True 7507.00 7507 100.00000 1 4065 1 chr7B.!!$R1 4064
1 TraesCS7B01G170800 chr7D 263504184 263507274 3090 True 998.50 1703 92.88875 499 3339 4 chr7D.!!$R1 2840
2 TraesCS7B01G170800 chr7A 286223280 286225807 2527 True 873.25 1515 91.03425 728 3268 4 chr7A.!!$R3 2540
3 TraesCS7B01G170800 chr2A 528440551 528441123 572 True 599.00 599 85.81300 3499 4065 1 chr2A.!!$R3 566
4 TraesCS7B01G170800 chr2B 733969564 733970136 572 False 588.00 588 85.46700 3499 4065 1 chr2B.!!$F1 566
5 TraesCS7B01G170800 chr6B 182644015 182644584 569 True 507.00 507 83.10300 3499 4064 1 chr6B.!!$R2 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 127 0.032017 AGACGGCCCTGGATAGAAGT 60.032 55.0 0.00 0.0 0.00 3.01 F
721 893 0.179134 ACGCGCTCTGTGGAGTTATC 60.179 55.0 5.73 0.0 41.38 1.75 F
1963 2189 0.305922 CGCTCTTTCGCCATGGAATC 59.694 55.0 18.40 0.0 0.00 2.52 F
2138 2414 0.166814 GCTGAGCAAAACGGTAGCTG 59.833 55.0 4.92 0.0 39.02 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1452 1676 0.037232 CGTCCTGGTGGAAGAACCTC 60.037 60.0 0.00 0.00 45.18 3.85 R
2045 2271 0.250295 CAACCTGAGCGTTGGGAAGA 60.250 55.0 6.07 0.00 39.58 2.87 R
2853 3156 0.040067 TGATCGCGATCAGGATCACG 60.040 55.0 40.14 12.18 42.92 4.35 R
3429 3794 0.106167 CGAGTGGGGGAGAGGATGTA 60.106 60.0 0.00 0.00 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.632855 TGCGCACATTACACAAATTGA 57.367 38.095 5.66 0.00 0.00 2.57
21 22 4.171663 TGCGCACATTACACAAATTGAT 57.828 36.364 5.66 0.00 0.00 2.57
22 23 5.302357 TGCGCACATTACACAAATTGATA 57.698 34.783 5.66 0.00 0.00 2.15
23 24 5.331098 TGCGCACATTACACAAATTGATAG 58.669 37.500 5.66 0.00 0.00 2.08
24 25 4.204978 GCGCACATTACACAAATTGATAGC 59.795 41.667 0.30 0.00 0.00 2.97
25 26 4.734854 CGCACATTACACAAATTGATAGCC 59.265 41.667 0.00 0.00 0.00 3.93
26 27 5.649557 GCACATTACACAAATTGATAGCCA 58.350 37.500 0.00 0.00 0.00 4.75
27 28 6.098679 GCACATTACACAAATTGATAGCCAA 58.901 36.000 0.00 0.00 39.41 4.52
28 29 6.589523 GCACATTACACAAATTGATAGCCAAA 59.410 34.615 0.00 0.00 38.43 3.28
29 30 7.411804 GCACATTACACAAATTGATAGCCAAAC 60.412 37.037 0.00 0.00 38.43 2.93
30 31 7.814107 CACATTACACAAATTGATAGCCAAACT 59.186 33.333 0.00 0.00 38.43 2.66
31 32 7.814107 ACATTACACAAATTGATAGCCAAACTG 59.186 33.333 0.00 0.00 38.43 3.16
32 33 5.789643 ACACAAATTGATAGCCAAACTGT 57.210 34.783 0.00 0.00 38.43 3.55
33 34 5.531634 ACACAAATTGATAGCCAAACTGTG 58.468 37.500 0.00 15.13 46.24 3.66
60 61 2.981350 TTTTTCGCACCGAGGCCC 60.981 61.111 0.00 0.00 37.14 5.80
66 67 2.679996 GCACCGAGGCCCCAATTT 60.680 61.111 0.00 0.00 0.00 1.82
67 68 2.282783 GCACCGAGGCCCCAATTTT 61.283 57.895 0.00 0.00 0.00 1.82
68 69 0.968393 GCACCGAGGCCCCAATTTTA 60.968 55.000 0.00 0.00 0.00 1.52
69 70 1.102978 CACCGAGGCCCCAATTTTAG 58.897 55.000 0.00 0.00 0.00 1.85
70 71 0.683179 ACCGAGGCCCCAATTTTAGC 60.683 55.000 0.00 0.00 0.00 3.09
71 72 0.682855 CCGAGGCCCCAATTTTAGCA 60.683 55.000 0.00 0.00 0.00 3.49
72 73 1.402787 CGAGGCCCCAATTTTAGCAT 58.597 50.000 0.00 0.00 0.00 3.79
73 74 2.582052 CGAGGCCCCAATTTTAGCATA 58.418 47.619 0.00 0.00 0.00 3.14
74 75 3.157087 CGAGGCCCCAATTTTAGCATAT 58.843 45.455 0.00 0.00 0.00 1.78
75 76 4.331968 CGAGGCCCCAATTTTAGCATATA 58.668 43.478 0.00 0.00 0.00 0.86
76 77 4.949856 CGAGGCCCCAATTTTAGCATATAT 59.050 41.667 0.00 0.00 0.00 0.86
77 78 5.418840 CGAGGCCCCAATTTTAGCATATATT 59.581 40.000 0.00 0.00 0.00 1.28
78 79 6.071391 CGAGGCCCCAATTTTAGCATATATTT 60.071 38.462 0.00 0.00 0.00 1.40
79 80 7.525360 CGAGGCCCCAATTTTAGCATATATTTT 60.525 37.037 0.00 0.00 0.00 1.82
80 81 8.044574 AGGCCCCAATTTTAGCATATATTTTT 57.955 30.769 0.00 0.00 0.00 1.94
99 100 4.958897 CCGCACCGGGGTCCAAAA 62.959 66.667 5.12 0.00 44.15 2.44
100 101 2.675075 CGCACCGGGGTCCAAAAT 60.675 61.111 5.12 0.00 0.00 1.82
101 102 2.272447 CGCACCGGGGTCCAAAATT 61.272 57.895 5.12 0.00 0.00 1.82
102 103 1.811645 CGCACCGGGGTCCAAAATTT 61.812 55.000 5.12 0.00 0.00 1.82
103 104 0.037697 GCACCGGGGTCCAAAATTTC 60.038 55.000 5.12 0.00 0.00 2.17
104 105 1.627864 CACCGGGGTCCAAAATTTCT 58.372 50.000 6.32 0.00 0.00 2.52
105 106 1.272212 CACCGGGGTCCAAAATTTCTG 59.728 52.381 6.32 0.00 0.00 3.02
106 107 0.894835 CCGGGGTCCAAAATTTCTGG 59.105 55.000 11.15 11.15 35.05 3.86
107 108 1.549037 CCGGGGTCCAAAATTTCTGGA 60.549 52.381 14.39 14.39 40.77 3.86
108 109 1.818674 CGGGGTCCAAAATTTCTGGAG 59.181 52.381 17.22 6.97 43.68 3.86
109 110 2.554344 CGGGGTCCAAAATTTCTGGAGA 60.554 50.000 17.22 1.51 43.68 3.71
110 111 2.826128 GGGGTCCAAAATTTCTGGAGAC 59.174 50.000 17.22 14.03 43.68 3.36
111 112 2.488153 GGGTCCAAAATTTCTGGAGACG 59.512 50.000 17.22 0.00 43.68 4.18
112 113 2.488153 GGTCCAAAATTTCTGGAGACGG 59.512 50.000 17.22 0.20 43.68 4.79
113 114 2.095212 GTCCAAAATTTCTGGAGACGGC 60.095 50.000 17.22 6.72 43.68 5.68
114 115 1.202348 CCAAAATTTCTGGAGACGGCC 59.798 52.381 11.71 0.00 35.85 6.13
115 116 1.202348 CAAAATTTCTGGAGACGGCCC 59.798 52.381 0.00 0.00 36.33 5.80
116 117 0.698818 AAATTTCTGGAGACGGCCCT 59.301 50.000 0.00 0.00 36.33 5.19
117 118 0.035056 AATTTCTGGAGACGGCCCTG 60.035 55.000 0.00 0.00 36.33 4.45
118 119 1.915078 ATTTCTGGAGACGGCCCTGG 61.915 60.000 0.00 0.00 36.33 4.45
119 120 3.539593 TTCTGGAGACGGCCCTGGA 62.540 63.158 0.00 0.00 36.33 3.86
120 121 2.765807 CTGGAGACGGCCCTGGAT 60.766 66.667 0.00 0.00 0.00 3.41
121 122 1.457643 CTGGAGACGGCCCTGGATA 60.458 63.158 0.00 0.00 0.00 2.59
122 123 1.457643 TGGAGACGGCCCTGGATAG 60.458 63.158 0.00 0.00 0.00 2.08
123 124 1.152525 GGAGACGGCCCTGGATAGA 60.153 63.158 0.00 0.00 0.00 1.98
124 125 0.759436 GGAGACGGCCCTGGATAGAA 60.759 60.000 0.00 0.00 0.00 2.10
125 126 0.676736 GAGACGGCCCTGGATAGAAG 59.323 60.000 0.00 0.00 0.00 2.85
126 127 0.032017 AGACGGCCCTGGATAGAAGT 60.032 55.000 0.00 0.00 0.00 3.01
127 128 1.217183 AGACGGCCCTGGATAGAAGTA 59.783 52.381 0.00 0.00 0.00 2.24
128 129 1.614413 GACGGCCCTGGATAGAAGTAG 59.386 57.143 0.00 0.00 0.00 2.57
129 130 0.318762 CGGCCCTGGATAGAAGTAGC 59.681 60.000 0.00 0.00 0.00 3.58
130 131 0.318762 GGCCCTGGATAGAAGTAGCG 59.681 60.000 0.00 0.00 0.00 4.26
131 132 1.329256 GCCCTGGATAGAAGTAGCGA 58.671 55.000 0.00 0.00 0.00 4.93
132 133 1.000052 GCCCTGGATAGAAGTAGCGAC 60.000 57.143 0.00 0.00 0.00 5.19
133 134 2.307768 CCCTGGATAGAAGTAGCGACA 58.692 52.381 0.00 0.00 0.00 4.35
134 135 2.294791 CCCTGGATAGAAGTAGCGACAG 59.705 54.545 0.00 0.00 0.00 3.51
135 136 3.215151 CCTGGATAGAAGTAGCGACAGA 58.785 50.000 0.00 0.00 0.00 3.41
136 137 3.823873 CCTGGATAGAAGTAGCGACAGAT 59.176 47.826 0.00 0.00 0.00 2.90
137 138 4.320861 CCTGGATAGAAGTAGCGACAGATG 60.321 50.000 0.00 0.00 0.00 2.90
138 139 4.207955 TGGATAGAAGTAGCGACAGATGT 58.792 43.478 0.00 0.00 0.00 3.06
139 140 4.645136 TGGATAGAAGTAGCGACAGATGTT 59.355 41.667 0.00 0.00 0.00 2.71
140 141 4.979197 GGATAGAAGTAGCGACAGATGTTG 59.021 45.833 0.00 0.00 0.00 3.33
149 150 2.477825 CGACAGATGTTGCCTAGATGG 58.522 52.381 0.00 0.00 39.35 3.51
150 151 2.159043 CGACAGATGTTGCCTAGATGGT 60.159 50.000 0.00 0.00 38.35 3.55
151 152 3.201290 GACAGATGTTGCCTAGATGGTG 58.799 50.000 0.00 0.00 38.35 4.17
152 153 2.092753 ACAGATGTTGCCTAGATGGTGG 60.093 50.000 0.00 0.00 38.35 4.61
158 159 3.393472 GCCTAGATGGTGGCTTCAG 57.607 57.895 0.00 0.00 45.26 3.02
159 160 0.833287 GCCTAGATGGTGGCTTCAGA 59.167 55.000 0.00 0.00 45.26 3.27
160 161 1.419387 GCCTAGATGGTGGCTTCAGAT 59.581 52.381 0.00 0.00 45.26 2.90
161 162 2.158696 GCCTAGATGGTGGCTTCAGATT 60.159 50.000 0.00 0.00 45.26 2.40
162 163 3.686691 GCCTAGATGGTGGCTTCAGATTT 60.687 47.826 0.00 0.00 45.26 2.17
163 164 4.444876 GCCTAGATGGTGGCTTCAGATTTA 60.445 45.833 0.00 0.00 45.26 1.40
164 165 5.059833 CCTAGATGGTGGCTTCAGATTTAC 58.940 45.833 0.00 0.00 0.00 2.01
165 166 4.851639 AGATGGTGGCTTCAGATTTACT 57.148 40.909 0.00 0.00 0.00 2.24
166 167 5.957771 AGATGGTGGCTTCAGATTTACTA 57.042 39.130 0.00 0.00 0.00 1.82
167 168 6.506538 AGATGGTGGCTTCAGATTTACTAT 57.493 37.500 0.00 0.00 0.00 2.12
168 169 6.904626 AGATGGTGGCTTCAGATTTACTATT 58.095 36.000 0.00 0.00 0.00 1.73
169 170 6.769822 AGATGGTGGCTTCAGATTTACTATTG 59.230 38.462 0.00 0.00 0.00 1.90
170 171 5.815581 TGGTGGCTTCAGATTTACTATTGT 58.184 37.500 0.00 0.00 0.00 2.71
171 172 6.953101 TGGTGGCTTCAGATTTACTATTGTA 58.047 36.000 0.00 0.00 0.00 2.41
172 173 7.573710 TGGTGGCTTCAGATTTACTATTGTAT 58.426 34.615 0.00 0.00 0.00 2.29
173 174 8.052748 TGGTGGCTTCAGATTTACTATTGTATT 58.947 33.333 0.00 0.00 0.00 1.89
174 175 8.903820 GGTGGCTTCAGATTTACTATTGTATTT 58.096 33.333 0.00 0.00 0.00 1.40
227 228 9.745880 AATAAAGTGGTTGTATGTATCGTCTAG 57.254 33.333 0.00 0.00 0.00 2.43
228 229 7.400599 AAAGTGGTTGTATGTATCGTCTAGA 57.599 36.000 0.00 0.00 0.00 2.43
229 230 6.374565 AGTGGTTGTATGTATCGTCTAGAC 57.625 41.667 13.18 13.18 0.00 2.59
241 242 1.661341 GTCTAGACGTAGAAGCCGGA 58.339 55.000 5.05 0.00 37.02 5.14
242 243 1.598601 GTCTAGACGTAGAAGCCGGAG 59.401 57.143 5.05 0.00 37.02 4.63
243 244 1.474677 TCTAGACGTAGAAGCCGGAGG 60.475 57.143 5.05 0.00 41.22 4.30
244 245 4.068272 TCTAGACGTAGAAGCCGGAGGT 62.068 54.545 5.05 0.00 40.65 3.85
245 246 4.759130 TCTAGACGTAGAAGCCGGAGGTA 61.759 52.174 5.05 0.00 40.65 3.08
246 247 6.022970 TCTAGACGTAGAAGCCGGAGGTAT 62.023 50.000 5.05 0.00 40.65 2.73
247 248 7.435547 TCTAGACGTAGAAGCCGGAGGTATT 62.436 48.000 5.05 0.00 40.65 1.89
261 262 5.722021 GGAGGTATTCCTGCTTTTCAAAA 57.278 39.130 2.43 0.00 46.61 2.44
262 263 6.096673 GGAGGTATTCCTGCTTTTCAAAAA 57.903 37.500 2.43 0.00 46.61 1.94
300 301 2.088950 TTTTACGCAGTAGGCAGTCC 57.911 50.000 0.00 0.00 46.93 3.85
301 302 0.970640 TTTACGCAGTAGGCAGTCCA 59.029 50.000 0.00 0.00 46.93 4.02
302 303 1.191535 TTACGCAGTAGGCAGTCCAT 58.808 50.000 0.00 0.00 46.93 3.41
303 304 1.191535 TACGCAGTAGGCAGTCCATT 58.808 50.000 0.00 0.00 45.11 3.16
304 305 1.191535 ACGCAGTAGGCAGTCCATTA 58.808 50.000 0.00 0.00 41.94 1.90
305 306 1.553248 ACGCAGTAGGCAGTCCATTAA 59.447 47.619 0.00 0.00 41.94 1.40
306 307 2.170607 ACGCAGTAGGCAGTCCATTAAT 59.829 45.455 0.00 0.00 41.94 1.40
307 308 2.545526 CGCAGTAGGCAGTCCATTAATG 59.454 50.000 8.58 8.58 45.17 1.90
308 309 3.545703 GCAGTAGGCAGTCCATTAATGT 58.454 45.455 14.25 0.00 43.97 2.71
309 310 3.947834 GCAGTAGGCAGTCCATTAATGTT 59.052 43.478 14.25 0.00 43.97 2.71
310 311 4.035675 GCAGTAGGCAGTCCATTAATGTTC 59.964 45.833 14.25 6.82 43.97 3.18
311 312 5.431765 CAGTAGGCAGTCCATTAATGTTCT 58.568 41.667 14.25 8.84 33.74 3.01
312 313 5.295292 CAGTAGGCAGTCCATTAATGTTCTG 59.705 44.000 22.08 22.08 33.74 3.02
313 314 4.307032 AGGCAGTCCATTAATGTTCTGT 57.693 40.909 24.58 12.65 32.87 3.41
314 315 5.435686 AGGCAGTCCATTAATGTTCTGTA 57.564 39.130 24.58 2.97 32.87 2.74
315 316 6.006275 AGGCAGTCCATTAATGTTCTGTAT 57.994 37.500 24.58 16.64 32.87 2.29
316 317 6.426587 AGGCAGTCCATTAATGTTCTGTATT 58.573 36.000 24.58 14.86 32.87 1.89
317 318 7.573710 AGGCAGTCCATTAATGTTCTGTATTA 58.426 34.615 24.58 0.00 32.87 0.98
318 319 7.499232 AGGCAGTCCATTAATGTTCTGTATTAC 59.501 37.037 24.58 14.72 32.87 1.89
319 320 7.499232 GGCAGTCCATTAATGTTCTGTATTACT 59.501 37.037 24.58 10.14 32.87 2.24
320 321 8.893727 GCAGTCCATTAATGTTCTGTATTACTT 58.106 33.333 24.58 0.00 32.87 2.24
322 323 9.959721 AGTCCATTAATGTTCTGTATTACTTGT 57.040 29.630 14.25 0.00 0.00 3.16
323 324 9.988350 GTCCATTAATGTTCTGTATTACTTGTG 57.012 33.333 14.25 0.00 0.00 3.33
324 325 9.733556 TCCATTAATGTTCTGTATTACTTGTGT 57.266 29.630 14.25 0.00 0.00 3.72
332 333 9.781834 TGTTCTGTATTACTTGTGTTTTTCTTG 57.218 29.630 0.00 0.00 0.00 3.02
333 334 9.233232 GTTCTGTATTACTTGTGTTTTTCTTGG 57.767 33.333 0.00 0.00 0.00 3.61
334 335 8.514330 TCTGTATTACTTGTGTTTTTCTTGGT 57.486 30.769 0.00 0.00 0.00 3.67
335 336 8.962679 TCTGTATTACTTGTGTTTTTCTTGGTT 58.037 29.630 0.00 0.00 0.00 3.67
340 341 8.934507 TTACTTGTGTTTTTCTTGGTTAATGG 57.065 30.769 0.00 0.00 0.00 3.16
341 342 6.941857 ACTTGTGTTTTTCTTGGTTAATGGT 58.058 32.000 0.00 0.00 0.00 3.55
342 343 7.390823 ACTTGTGTTTTTCTTGGTTAATGGTT 58.609 30.769 0.00 0.00 0.00 3.67
343 344 7.880713 ACTTGTGTTTTTCTTGGTTAATGGTTT 59.119 29.630 0.00 0.00 0.00 3.27
344 345 8.622948 TTGTGTTTTTCTTGGTTAATGGTTTT 57.377 26.923 0.00 0.00 0.00 2.43
345 346 9.720769 TTGTGTTTTTCTTGGTTAATGGTTTTA 57.279 25.926 0.00 0.00 0.00 1.52
346 347 9.892130 TGTGTTTTTCTTGGTTAATGGTTTTAT 57.108 25.926 0.00 0.00 0.00 1.40
358 359 9.093970 GGTTAATGGTTTTATATTTTCACTGGC 57.906 33.333 0.00 0.00 0.00 4.85
359 360 9.646427 GTTAATGGTTTTATATTTTCACTGGCA 57.354 29.630 0.00 0.00 0.00 4.92
360 361 9.868277 TTAATGGTTTTATATTTTCACTGGCAG 57.132 29.630 14.16 14.16 0.00 4.85
361 362 5.719173 TGGTTTTATATTTTCACTGGCAGC 58.281 37.500 15.89 0.00 0.00 5.25
362 363 5.244851 TGGTTTTATATTTTCACTGGCAGCA 59.755 36.000 15.89 0.00 0.00 4.41
363 364 6.162777 GGTTTTATATTTTCACTGGCAGCAA 58.837 36.000 15.89 4.76 0.00 3.91
364 365 6.648725 GGTTTTATATTTTCACTGGCAGCAAA 59.351 34.615 15.89 11.18 0.00 3.68
365 366 7.334171 GGTTTTATATTTTCACTGGCAGCAAAT 59.666 33.333 15.89 17.56 0.00 2.32
366 367 8.720562 GTTTTATATTTTCACTGGCAGCAAATT 58.279 29.630 15.89 12.18 0.00 1.82
367 368 7.830940 TTATATTTTCACTGGCAGCAAATTG 57.169 32.000 15.89 4.95 0.00 2.32
368 369 1.868469 TTTCACTGGCAGCAAATTGC 58.132 45.000 15.89 10.41 45.46 3.56
382 383 4.660105 GCAAATTGCATGTGTTGTTTTGT 58.340 34.783 13.73 0.00 44.26 2.83
383 384 5.804173 GCAAATTGCATGTGTTGTTTTGTA 58.196 33.333 13.73 0.00 44.26 2.41
384 385 6.253746 GCAAATTGCATGTGTTGTTTTGTAA 58.746 32.000 13.73 0.00 44.26 2.41
385 386 6.744537 GCAAATTGCATGTGTTGTTTTGTAAA 59.255 30.769 13.73 0.00 44.26 2.01
386 387 7.253256 GCAAATTGCATGTGTTGTTTTGTAAAC 60.253 33.333 13.73 0.00 44.26 2.01
387 388 6.974932 ATTGCATGTGTTGTTTTGTAAACA 57.025 29.167 1.10 1.10 34.01 2.83
388 389 6.785488 TTGCATGTGTTGTTTTGTAAACAA 57.215 29.167 12.30 12.30 37.99 2.83
389 390 6.400579 TGCATGTGTTGTTTTGTAAACAAG 57.599 33.333 15.70 7.20 40.38 3.16
390 391 5.928839 TGCATGTGTTGTTTTGTAAACAAGT 59.071 32.000 15.70 3.33 40.38 3.16
391 392 7.090808 TGCATGTGTTGTTTTGTAAACAAGTA 58.909 30.769 15.70 7.56 40.38 2.24
392 393 7.062371 TGCATGTGTTGTTTTGTAAACAAGTAC 59.938 33.333 15.70 16.46 40.38 2.73
393 394 7.274686 GCATGTGTTGTTTTGTAAACAAGTACT 59.725 33.333 15.70 0.00 40.38 2.73
394 395 8.794406 CATGTGTTGTTTTGTAAACAAGTACTC 58.206 33.333 15.70 8.53 40.38 2.59
395 396 7.306953 TGTGTTGTTTTGTAAACAAGTACTCC 58.693 34.615 15.70 6.19 40.38 3.85
396 397 6.748658 GTGTTGTTTTGTAAACAAGTACTCCC 59.251 38.462 15.70 5.63 40.38 4.30
397 398 6.660094 TGTTGTTTTGTAAACAAGTACTCCCT 59.340 34.615 15.70 0.00 40.38 4.20
398 399 6.930667 TGTTTTGTAAACAAGTACTCCCTC 57.069 37.500 0.00 0.00 37.15 4.30
399 400 5.824097 TGTTTTGTAAACAAGTACTCCCTCC 59.176 40.000 0.00 0.00 37.15 4.30
400 401 5.633655 TTTGTAAACAAGTACTCCCTCCA 57.366 39.130 0.00 0.00 37.15 3.86
401 402 5.836024 TTGTAAACAAGTACTCCCTCCAT 57.164 39.130 0.00 0.00 0.00 3.41
402 403 6.938698 TTGTAAACAAGTACTCCCTCCATA 57.061 37.500 0.00 0.00 0.00 2.74
403 404 6.938698 TGTAAACAAGTACTCCCTCCATAA 57.061 37.500 0.00 0.00 0.00 1.90
404 405 7.319052 TGTAAACAAGTACTCCCTCCATAAA 57.681 36.000 0.00 0.00 0.00 1.40
405 406 7.163441 TGTAAACAAGTACTCCCTCCATAAAC 58.837 38.462 0.00 0.00 0.00 2.01
406 407 6.449830 AAACAAGTACTCCCTCCATAAACT 57.550 37.500 0.00 0.00 0.00 2.66
407 408 7.563724 AAACAAGTACTCCCTCCATAAACTA 57.436 36.000 0.00 0.00 0.00 2.24
408 409 7.563724 AACAAGTACTCCCTCCATAAACTAA 57.436 36.000 0.00 0.00 0.00 2.24
409 410 7.750947 ACAAGTACTCCCTCCATAAACTAAT 57.249 36.000 0.00 0.00 0.00 1.73
410 411 8.849543 ACAAGTACTCCCTCCATAAACTAATA 57.150 34.615 0.00 0.00 0.00 0.98
411 412 9.448587 ACAAGTACTCCCTCCATAAACTAATAT 57.551 33.333 0.00 0.00 0.00 1.28
417 418 8.817876 ACTCCCTCCATAAACTAATATAAGAGC 58.182 37.037 0.00 0.00 0.00 4.09
418 419 8.974292 TCCCTCCATAAACTAATATAAGAGCT 57.026 34.615 0.00 0.00 0.00 4.09
419 420 9.393786 TCCCTCCATAAACTAATATAAGAGCTT 57.606 33.333 0.00 0.00 0.00 3.74
437 438 8.409358 AAGAGCTTTTACATCACTATTTTGGT 57.591 30.769 0.00 0.00 0.00 3.67
438 439 9.515226 AAGAGCTTTTACATCACTATTTTGGTA 57.485 29.630 0.00 0.00 0.00 3.25
439 440 9.686683 AGAGCTTTTACATCACTATTTTGGTAT 57.313 29.630 0.00 0.00 0.00 2.73
523 524 9.647918 TTAATCATGGAGTAGATAAGAGTGACT 57.352 33.333 0.00 0.00 0.00 3.41
535 536 0.994995 GAGTGACTACATGCGTGCAG 59.005 55.000 5.64 5.03 0.00 4.41
582 583 4.094442 CAGCGTTTGTCTCCTATAAAACCC 59.906 45.833 0.00 0.00 30.47 4.11
709 881 0.457853 TGATTAGTGGACACGCGCTC 60.458 55.000 5.73 0.00 36.20 5.03
718 890 2.356313 CACGCGCTCTGTGGAGTT 60.356 61.111 5.73 0.00 41.38 3.01
719 891 1.080772 CACGCGCTCTGTGGAGTTA 60.081 57.895 5.73 0.00 41.38 2.24
721 893 0.179134 ACGCGCTCTGTGGAGTTATC 60.179 55.000 5.73 0.00 41.38 1.75
722 894 1.202973 CGCGCTCTGTGGAGTTATCG 61.203 60.000 5.56 0.00 41.38 2.92
724 896 1.469251 GCGCTCTGTGGAGTTATCGAA 60.469 52.381 0.00 0.00 41.38 3.71
735 913 9.314321 CTGTGGAGTTATCGAATAAACATAAGT 57.686 33.333 10.20 0.00 0.00 2.24
842 1021 3.067180 CCGGTTAACTCGCAAGGATAGTA 59.933 47.826 5.42 0.00 38.47 1.82
845 1024 4.142093 GGTTAACTCGCAAGGATAGTACCA 60.142 45.833 5.42 0.00 38.47 3.25
879 1058 1.135083 CGGAAGCACCAAGTATCGTCT 60.135 52.381 1.20 0.00 38.90 4.18
880 1059 2.271800 GGAAGCACCAAGTATCGTCTG 58.728 52.381 0.00 0.00 38.79 3.51
881 1060 2.094182 GGAAGCACCAAGTATCGTCTGA 60.094 50.000 0.00 0.00 38.79 3.27
930 1109 0.662619 CCGCATTGCATTCGTGGTAT 59.337 50.000 9.69 0.00 0.00 2.73
988 1207 2.312390 GGGATACAGGACAGGAGAGAC 58.688 57.143 0.00 0.00 39.74 3.36
990 1209 5.299646 GGGATACAGGACAGGAGAGACCT 62.300 56.522 0.00 0.00 45.98 3.85
1026 1250 4.927782 TGTGCTGGCGGTGGTGAC 62.928 66.667 0.00 0.00 0.00 3.67
1452 1676 3.740128 CTTCGCCACCCCGATCCTG 62.740 68.421 0.00 0.00 37.06 3.86
1874 2098 1.588674 TTCGTACAGCTTGGTGGTTG 58.411 50.000 4.82 0.00 0.00 3.77
1875 2099 0.466543 TCGTACAGCTTGGTGGTTGT 59.533 50.000 4.82 0.00 35.08 3.32
1876 2100 1.687660 TCGTACAGCTTGGTGGTTGTA 59.312 47.619 4.82 0.00 33.09 2.41
1877 2101 1.796459 CGTACAGCTTGGTGGTTGTAC 59.204 52.381 10.17 10.17 44.58 2.90
1878 2102 2.803852 CGTACAGCTTGGTGGTTGTACA 60.804 50.000 16.97 0.00 46.67 2.90
1879 2103 2.656947 ACAGCTTGGTGGTTGTACAT 57.343 45.000 0.00 0.00 0.00 2.29
1880 2104 3.780804 ACAGCTTGGTGGTTGTACATA 57.219 42.857 0.00 0.00 0.00 2.29
1881 2105 3.408634 ACAGCTTGGTGGTTGTACATAC 58.591 45.455 0.00 0.00 0.00 2.39
1882 2106 2.415168 CAGCTTGGTGGTTGTACATACG 59.585 50.000 0.00 0.00 0.00 3.06
1884 2108 3.258872 AGCTTGGTGGTTGTACATACGTA 59.741 43.478 0.00 0.00 0.00 3.57
1885 2109 3.368843 GCTTGGTGGTTGTACATACGTAC 59.631 47.826 0.00 0.00 46.94 3.67
1886 2110 3.591196 TGGTGGTTGTACATACGTACC 57.409 47.619 0.00 6.71 46.33 3.34
1953 2179 3.005472 TCACCTATATTCCCGCTCTTTCG 59.995 47.826 0.00 0.00 0.00 3.46
1955 2181 2.338500 CTATATTCCCGCTCTTTCGCC 58.662 52.381 0.00 0.00 0.00 5.54
1963 2189 0.305922 CGCTCTTTCGCCATGGAATC 59.694 55.000 18.40 0.00 0.00 2.52
1969 2195 1.447217 TCGCCATGGAATCTGCGAT 59.553 52.632 18.40 0.00 45.23 4.58
1970 2196 0.881600 TCGCCATGGAATCTGCGATG 60.882 55.000 18.40 0.00 45.23 3.84
1971 2197 0.881600 CGCCATGGAATCTGCGATGA 60.882 55.000 18.40 0.00 44.66 2.92
1972 2198 1.531423 GCCATGGAATCTGCGATGAT 58.469 50.000 18.40 0.00 0.00 2.45
1973 2199 1.199327 GCCATGGAATCTGCGATGATG 59.801 52.381 18.40 0.00 0.00 3.07
1974 2200 2.774687 CCATGGAATCTGCGATGATGA 58.225 47.619 5.56 0.00 0.00 2.92
1975 2201 3.344515 CCATGGAATCTGCGATGATGAT 58.655 45.455 5.56 0.00 0.00 2.45
1976 2202 4.510571 CCATGGAATCTGCGATGATGATA 58.489 43.478 5.56 0.00 0.00 2.15
1977 2203 5.123936 CCATGGAATCTGCGATGATGATAT 58.876 41.667 5.56 0.00 0.00 1.63
1978 2204 5.236695 CCATGGAATCTGCGATGATGATATC 59.763 44.000 5.56 0.00 0.00 1.63
1979 2205 5.672421 TGGAATCTGCGATGATGATATCT 57.328 39.130 3.98 0.00 0.00 1.98
1980 2206 5.658468 TGGAATCTGCGATGATGATATCTC 58.342 41.667 3.98 0.18 0.00 2.75
1981 2207 5.421374 TGGAATCTGCGATGATGATATCTCT 59.579 40.000 3.98 0.00 0.00 3.10
1982 2208 6.604795 TGGAATCTGCGATGATGATATCTCTA 59.395 38.462 3.98 0.00 0.00 2.43
1983 2209 7.287235 TGGAATCTGCGATGATGATATCTCTAT 59.713 37.037 3.98 0.00 0.00 1.98
1984 2210 7.809331 GGAATCTGCGATGATGATATCTCTATC 59.191 40.741 3.98 0.00 35.30 2.08
1985 2211 6.297694 TCTGCGATGATGATATCTCTATCG 57.702 41.667 21.13 21.13 37.20 2.92
1989 2215 6.011476 CGATGATGATATCTCTATCGCCAT 57.989 41.667 16.87 5.40 37.20 4.40
2027 2253 5.513267 GGAGTTCTGGTTCTACATGTTCCTT 60.513 44.000 2.30 0.00 0.00 3.36
2045 2271 2.951642 CCTTATTGTGATCGTGGGCAAT 59.048 45.455 0.00 0.00 35.90 3.56
2063 2289 0.693049 ATCTTCCCAACGCTCAGGTT 59.307 50.000 0.00 0.00 0.00 3.50
2112 2342 4.137543 AGCTAGCTGTTATAATTGCCACC 58.862 43.478 18.57 0.25 0.00 4.61
2138 2414 0.166814 GCTGAGCAAAACGGTAGCTG 59.833 55.000 4.92 0.00 39.02 4.24
2150 2426 4.482952 ACGGTAGCTGGCTTTAGTAAAT 57.517 40.909 0.00 0.00 0.00 1.40
2152 2428 5.354767 ACGGTAGCTGGCTTTAGTAAATAC 58.645 41.667 0.00 0.00 0.00 1.89
2153 2429 4.443394 CGGTAGCTGGCTTTAGTAAATACG 59.557 45.833 0.00 0.00 0.00 3.06
2154 2430 5.354767 GGTAGCTGGCTTTAGTAAATACGT 58.645 41.667 0.00 0.00 0.00 3.57
2156 2432 6.640092 GGTAGCTGGCTTTAGTAAATACGTAG 59.360 42.308 0.08 0.00 0.00 3.51
2325 2604 5.471556 TCAACCAATCTGCATCAAAACAT 57.528 34.783 0.00 0.00 0.00 2.71
2330 2609 7.837202 ACCAATCTGCATCAAAACATATTTG 57.163 32.000 0.00 0.00 0.00 2.32
2334 2613 4.858140 TCTGCATCAAAACATATTTGTGCG 59.142 37.500 16.17 13.01 38.27 5.34
2351 2630 1.122849 GCGTGCGCATTAATCCAATG 58.877 50.000 15.91 0.00 45.87 2.82
2352 2631 1.757574 CGTGCGCATTAATCCAATGG 58.242 50.000 15.91 0.00 43.70 3.16
2568 2848 2.095252 GGTCTTCGCCTTCACGCTC 61.095 63.158 0.00 0.00 0.00 5.03
2730 3010 1.437986 GATTCAGGTACGCGCTCCT 59.562 57.895 15.42 15.42 33.96 3.69
2762 3044 1.202245 TGTCTTTGTTCGTTTGGCTGC 60.202 47.619 0.00 0.00 0.00 5.25
2791 3090 1.820481 ACCGACCGTGGTTGTTTGG 60.820 57.895 5.57 0.65 39.99 3.28
2802 3105 2.768527 TGGTTGTTTGGCTTTGGATGAA 59.231 40.909 0.00 0.00 0.00 2.57
2989 3337 0.245539 CTTGGAATGTGCAGGCAAGG 59.754 55.000 0.00 0.00 0.00 3.61
3030 3378 3.494254 GTGGGGTGGTGGTGGTGA 61.494 66.667 0.00 0.00 0.00 4.02
3031 3379 2.451493 TGGGGTGGTGGTGGTGAT 60.451 61.111 0.00 0.00 0.00 3.06
3032 3380 2.035626 GGGGTGGTGGTGGTGATG 59.964 66.667 0.00 0.00 0.00 3.07
3189 3541 2.480587 CCCCGTTTGTGTTTTCTTGTCC 60.481 50.000 0.00 0.00 0.00 4.02
3200 3553 1.013596 TTCTTGTCCACAACACGCAG 58.986 50.000 0.00 0.00 37.70 5.18
3250 3607 4.097286 TGAAGACGGAAAAGGAAAAGGTTG 59.903 41.667 0.00 0.00 0.00 3.77
3330 3695 1.063266 TGGTTTGGTTTGGCCTTCTCT 60.063 47.619 3.32 0.00 38.35 3.10
3334 3699 4.119862 GTTTGGTTTGGCCTTCTCTTTTC 58.880 43.478 3.32 0.00 38.35 2.29
3335 3700 3.312736 TGGTTTGGCCTTCTCTTTTCT 57.687 42.857 3.32 0.00 38.35 2.52
3339 3704 4.811024 GGTTTGGCCTTCTCTTTTCTTTTG 59.189 41.667 3.32 0.00 0.00 2.44
3340 3705 4.670896 TTGGCCTTCTCTTTTCTTTTGG 57.329 40.909 3.32 0.00 0.00 3.28
3341 3706 3.642141 TGGCCTTCTCTTTTCTTTTGGT 58.358 40.909 3.32 0.00 0.00 3.67
3342 3707 3.384467 TGGCCTTCTCTTTTCTTTTGGTG 59.616 43.478 3.32 0.00 0.00 4.17
3343 3708 3.636764 GGCCTTCTCTTTTCTTTTGGTGA 59.363 43.478 0.00 0.00 0.00 4.02
3344 3709 4.261783 GGCCTTCTCTTTTCTTTTGGTGAG 60.262 45.833 0.00 0.00 0.00 3.51
3345 3710 4.339530 GCCTTCTCTTTTCTTTTGGTGAGT 59.660 41.667 0.00 0.00 0.00 3.41
3346 3711 5.531287 GCCTTCTCTTTTCTTTTGGTGAGTA 59.469 40.000 0.00 0.00 0.00 2.59
3347 3712 6.513556 GCCTTCTCTTTTCTTTTGGTGAGTAC 60.514 42.308 0.00 0.00 0.00 2.73
3348 3713 6.768381 CCTTCTCTTTTCTTTTGGTGAGTACT 59.232 38.462 0.00 0.00 0.00 2.73
3349 3714 7.931948 CCTTCTCTTTTCTTTTGGTGAGTACTA 59.068 37.037 0.00 0.00 0.00 1.82
3350 3715 8.888579 TTCTCTTTTCTTTTGGTGAGTACTAG 57.111 34.615 0.00 0.00 0.00 2.57
3351 3716 8.246430 TCTCTTTTCTTTTGGTGAGTACTAGA 57.754 34.615 0.00 0.00 0.00 2.43
3352 3717 8.142551 TCTCTTTTCTTTTGGTGAGTACTAGAC 58.857 37.037 0.00 0.00 0.00 2.59
3353 3718 6.921857 TCTTTTCTTTTGGTGAGTACTAGACG 59.078 38.462 0.00 0.00 0.00 4.18
3354 3719 4.170292 TCTTTTGGTGAGTACTAGACGC 57.830 45.455 0.00 0.00 0.00 5.19
3355 3720 3.057033 TCTTTTGGTGAGTACTAGACGCC 60.057 47.826 0.00 0.00 35.14 5.68
3356 3721 1.180029 TTGGTGAGTACTAGACGCCC 58.820 55.000 9.49 0.00 33.84 6.13
3357 3722 1.028330 TGGTGAGTACTAGACGCCCG 61.028 60.000 9.49 0.00 33.84 6.13
3358 3723 1.063811 GTGAGTACTAGACGCCCGC 59.936 63.158 0.00 0.00 0.00 6.13
3359 3724 2.327244 GAGTACTAGACGCCCGCG 59.673 66.667 7.69 7.69 46.03 6.46
3360 3725 3.803696 GAGTACTAGACGCCCGCGC 62.804 68.421 9.37 0.00 44.19 6.86
3375 3740 3.254654 CGCGCCGTTCGATCACAT 61.255 61.111 0.00 0.00 41.67 3.21
3376 3741 2.621000 GCGCCGTTCGATCACATC 59.379 61.111 0.00 0.00 41.67 3.06
3388 3753 3.677190 GATCACATCGTACAGACTCGT 57.323 47.619 0.00 0.00 0.00 4.18
3389 3754 4.017380 GATCACATCGTACAGACTCGTT 57.983 45.455 0.00 0.00 0.00 3.85
3390 3755 3.466712 TCACATCGTACAGACTCGTTC 57.533 47.619 0.00 0.00 0.00 3.95
3391 3756 2.159747 TCACATCGTACAGACTCGTTCG 60.160 50.000 0.00 0.00 0.00 3.95
3392 3757 2.071540 ACATCGTACAGACTCGTTCGA 58.928 47.619 8.38 8.38 41.81 3.71
3393 3758 2.676839 ACATCGTACAGACTCGTTCGAT 59.323 45.455 11.10 11.10 46.21 3.59
3394 3759 3.242349 ACATCGTACAGACTCGTTCGATC 60.242 47.826 12.85 0.00 44.34 3.69
3395 3760 2.340337 TCGTACAGACTCGTTCGATCA 58.660 47.619 0.00 0.00 34.37 2.92
3396 3761 2.093310 TCGTACAGACTCGTTCGATCAC 59.907 50.000 0.00 0.00 34.37 3.06
3397 3762 2.159747 CGTACAGACTCGTTCGATCACA 60.160 50.000 0.00 0.00 32.12 3.58
3398 3763 3.485381 CGTACAGACTCGTTCGATCACAT 60.485 47.826 0.00 0.00 32.12 3.21
3399 3764 4.260091 CGTACAGACTCGTTCGATCACATA 60.260 45.833 0.00 0.00 32.12 2.29
3400 3765 4.280101 ACAGACTCGTTCGATCACATAG 57.720 45.455 0.00 0.00 0.00 2.23
3401 3766 3.690139 ACAGACTCGTTCGATCACATAGT 59.310 43.478 0.00 0.00 0.00 2.12
3402 3767 4.156190 ACAGACTCGTTCGATCACATAGTT 59.844 41.667 0.00 0.00 0.00 2.24
3403 3768 4.731000 CAGACTCGTTCGATCACATAGTTC 59.269 45.833 0.00 0.00 0.00 3.01
3404 3769 4.030134 ACTCGTTCGATCACATAGTTCC 57.970 45.455 0.00 0.00 0.00 3.62
3405 3770 3.181489 ACTCGTTCGATCACATAGTTCCC 60.181 47.826 0.00 0.00 0.00 3.97
3406 3771 3.021695 TCGTTCGATCACATAGTTCCCT 58.978 45.455 0.00 0.00 0.00 4.20
3407 3772 3.446161 TCGTTCGATCACATAGTTCCCTT 59.554 43.478 0.00 0.00 0.00 3.95
3408 3773 4.081862 TCGTTCGATCACATAGTTCCCTTT 60.082 41.667 0.00 0.00 0.00 3.11
3409 3774 4.267928 CGTTCGATCACATAGTTCCCTTTC 59.732 45.833 0.00 0.00 0.00 2.62
3410 3775 4.402056 TCGATCACATAGTTCCCTTTCC 57.598 45.455 0.00 0.00 0.00 3.13
3411 3776 4.030913 TCGATCACATAGTTCCCTTTCCT 58.969 43.478 0.00 0.00 0.00 3.36
3412 3777 4.099573 TCGATCACATAGTTCCCTTTCCTC 59.900 45.833 0.00 0.00 0.00 3.71
3413 3778 4.100189 CGATCACATAGTTCCCTTTCCTCT 59.900 45.833 0.00 0.00 0.00 3.69
3414 3779 4.826274 TCACATAGTTCCCTTTCCTCTG 57.174 45.455 0.00 0.00 0.00 3.35
3415 3780 3.519510 TCACATAGTTCCCTTTCCTCTGG 59.480 47.826 0.00 0.00 0.00 3.86
3416 3781 2.239907 ACATAGTTCCCTTTCCTCTGGC 59.760 50.000 0.00 0.00 0.00 4.85
3417 3782 2.344093 TAGTTCCCTTTCCTCTGGCT 57.656 50.000 0.00 0.00 0.00 4.75
3418 3783 0.988063 AGTTCCCTTTCCTCTGGCTC 59.012 55.000 0.00 0.00 0.00 4.70
3419 3784 0.988063 GTTCCCTTTCCTCTGGCTCT 59.012 55.000 0.00 0.00 0.00 4.09
3420 3785 1.065782 GTTCCCTTTCCTCTGGCTCTC 60.066 57.143 0.00 0.00 0.00 3.20
3421 3786 0.618968 TCCCTTTCCTCTGGCTCTCC 60.619 60.000 0.00 0.00 0.00 3.71
3422 3787 1.519719 CCTTTCCTCTGGCTCTCCG 59.480 63.158 0.00 0.00 34.14 4.63
3423 3788 1.261238 CCTTTCCTCTGGCTCTCCGT 61.261 60.000 0.00 0.00 34.14 4.69
3424 3789 0.174617 CTTTCCTCTGGCTCTCCGTC 59.825 60.000 0.00 0.00 34.14 4.79
3425 3790 0.541998 TTTCCTCTGGCTCTCCGTCA 60.542 55.000 0.00 0.00 34.14 4.35
3426 3791 1.251527 TTCCTCTGGCTCTCCGTCAC 61.252 60.000 0.00 0.00 34.14 3.67
3427 3792 2.716017 CCTCTGGCTCTCCGTCACC 61.716 68.421 0.00 0.00 34.14 4.02
3428 3793 2.680352 TCTGGCTCTCCGTCACCC 60.680 66.667 0.00 0.00 34.14 4.61
3429 3794 2.681778 CTGGCTCTCCGTCACCCT 60.682 66.667 0.00 0.00 34.14 4.34
3430 3795 1.379977 CTGGCTCTCCGTCACCCTA 60.380 63.158 0.00 0.00 34.14 3.53
3431 3796 1.668101 CTGGCTCTCCGTCACCCTAC 61.668 65.000 0.00 0.00 34.14 3.18
3432 3797 1.681327 GGCTCTCCGTCACCCTACA 60.681 63.158 0.00 0.00 0.00 2.74
3433 3798 1.043673 GGCTCTCCGTCACCCTACAT 61.044 60.000 0.00 0.00 0.00 2.29
3434 3799 0.386113 GCTCTCCGTCACCCTACATC 59.614 60.000 0.00 0.00 0.00 3.06
3435 3800 1.033574 CTCTCCGTCACCCTACATCC 58.966 60.000 0.00 0.00 0.00 3.51
3436 3801 0.629596 TCTCCGTCACCCTACATCCT 59.370 55.000 0.00 0.00 0.00 3.24
3437 3802 1.033574 CTCCGTCACCCTACATCCTC 58.966 60.000 0.00 0.00 0.00 3.71
3438 3803 0.629596 TCCGTCACCCTACATCCTCT 59.370 55.000 0.00 0.00 0.00 3.69
3439 3804 1.033574 CCGTCACCCTACATCCTCTC 58.966 60.000 0.00 0.00 0.00 3.20
3440 3805 1.033574 CGTCACCCTACATCCTCTCC 58.966 60.000 0.00 0.00 0.00 3.71
3441 3806 1.415200 GTCACCCTACATCCTCTCCC 58.585 60.000 0.00 0.00 0.00 4.30
3442 3807 0.264955 TCACCCTACATCCTCTCCCC 59.735 60.000 0.00 0.00 0.00 4.81
3443 3808 0.764752 CACCCTACATCCTCTCCCCC 60.765 65.000 0.00 0.00 0.00 5.40
3444 3809 1.236026 ACCCTACATCCTCTCCCCCA 61.236 60.000 0.00 0.00 0.00 4.96
3445 3810 0.764752 CCCTACATCCTCTCCCCCAC 60.765 65.000 0.00 0.00 0.00 4.61
3446 3811 0.266152 CCTACATCCTCTCCCCCACT 59.734 60.000 0.00 0.00 0.00 4.00
3447 3812 1.710816 CTACATCCTCTCCCCCACTC 58.289 60.000 0.00 0.00 0.00 3.51
3448 3813 0.106167 TACATCCTCTCCCCCACTCG 60.106 60.000 0.00 0.00 0.00 4.18
3449 3814 2.444895 ATCCTCTCCCCCACTCGC 60.445 66.667 0.00 0.00 0.00 5.03
3450 3815 3.317436 ATCCTCTCCCCCACTCGCA 62.317 63.158 0.00 0.00 0.00 5.10
3451 3816 3.775654 CCTCTCCCCCACTCGCAC 61.776 72.222 0.00 0.00 0.00 5.34
3452 3817 4.135153 CTCTCCCCCACTCGCACG 62.135 72.222 0.00 0.00 0.00 5.34
3457 3822 4.323477 CCCCACTCGCACGGGAAA 62.323 66.667 0.00 0.00 46.34 3.13
3458 3823 2.281208 CCCACTCGCACGGGAAAA 60.281 61.111 0.00 0.00 46.34 2.29
3459 3824 1.894756 CCCACTCGCACGGGAAAAA 60.895 57.895 0.00 0.00 46.34 1.94
3478 3843 2.828661 AAGGGGAAAAGCATAGACCC 57.171 50.000 0.00 0.00 39.79 4.46
3479 3844 0.546598 AGGGGAAAAGCATAGACCCG 59.453 55.000 0.00 0.00 42.95 5.28
3480 3845 1.101635 GGGGAAAAGCATAGACCCGC 61.102 60.000 0.00 0.00 41.25 6.13
3481 3846 1.101635 GGGAAAAGCATAGACCCGCC 61.102 60.000 0.00 0.00 0.00 6.13
3482 3847 1.436983 GGAAAAGCATAGACCCGCCG 61.437 60.000 0.00 0.00 0.00 6.46
3483 3848 2.048312 GAAAAGCATAGACCCGCCGC 62.048 60.000 0.00 0.00 0.00 6.53
3484 3849 2.536997 AAAAGCATAGACCCGCCGCT 62.537 55.000 0.00 0.00 33.45 5.52
3485 3850 2.925162 AAAGCATAGACCCGCCGCTC 62.925 60.000 0.00 0.00 31.17 5.03
3486 3851 4.971125 GCATAGACCCGCCGCTCC 62.971 72.222 0.00 0.00 0.00 4.70
3487 3852 3.536917 CATAGACCCGCCGCTCCA 61.537 66.667 0.00 0.00 0.00 3.86
3488 3853 3.227276 ATAGACCCGCCGCTCCAG 61.227 66.667 0.00 0.00 0.00 3.86
3513 3878 3.195698 GATCCCGAACACCGCTGC 61.196 66.667 0.00 0.00 36.84 5.25
3532 3897 3.083349 CCCGCCATCAGTCTCCCA 61.083 66.667 0.00 0.00 0.00 4.37
3538 3903 0.531532 CCATCAGTCTCCCATGTCGC 60.532 60.000 0.00 0.00 0.00 5.19
3546 3912 2.819595 CCCATGTCGCTTGACCCG 60.820 66.667 0.00 0.00 42.17 5.28
3547 3913 2.819595 CCATGTCGCTTGACCCGG 60.820 66.667 0.00 0.00 42.17 5.73
3548 3914 2.047274 CATGTCGCTTGACCCGGT 60.047 61.111 0.00 0.00 42.17 5.28
3552 3918 4.243008 TCGCTTGACCCGGTGCAA 62.243 61.111 0.00 3.14 0.00 4.08
3635 4001 3.372730 GCTCCGCCATTGCCAACA 61.373 61.111 0.00 0.00 0.00 3.33
3636 4002 2.929903 GCTCCGCCATTGCCAACAA 61.930 57.895 0.00 0.00 40.87 2.83
3637 4003 1.080569 CTCCGCCATTGCCAACAAC 60.081 57.895 0.00 0.00 38.99 3.32
3639 4005 1.080569 CCGCCATTGCCAACAACTC 60.081 57.895 0.00 0.00 38.99 3.01
3643 4009 0.893270 CCATTGCCAACAACTCCCGA 60.893 55.000 0.00 0.00 38.99 5.14
3644 4010 0.240945 CATTGCCAACAACTCCCGAC 59.759 55.000 0.00 0.00 38.99 4.79
3645 4011 0.893727 ATTGCCAACAACTCCCGACC 60.894 55.000 0.00 0.00 38.99 4.79
3701 4067 3.149338 TTGCCGGTGCCAGCAAAAG 62.149 57.895 9.20 0.00 45.51 2.27
3705 4071 1.173043 CCGGTGCCAGCAAAAGATAA 58.827 50.000 0.00 0.00 0.00 1.75
3706 4072 1.543802 CCGGTGCCAGCAAAAGATAAA 59.456 47.619 0.00 0.00 0.00 1.40
3740 4107 7.264221 CAGCAAATTATAAATTGGTGGTAGCA 58.736 34.615 26.87 0.00 46.11 3.49
3785 4152 6.151985 TCTGTTTCAGCAAACCAAAAACTCTA 59.848 34.615 0.00 0.00 41.25 2.43
3792 4159 5.889289 AGCAAACCAAAAACTCTAGTGGTAA 59.111 36.000 1.20 0.00 43.62 2.85
3830 4198 0.594796 CAGCAAAACAGAACACCGGC 60.595 55.000 0.00 0.00 0.00 6.13
3849 4217 4.084589 CCGGCAGAAGCAAAAATTACAAAC 60.085 41.667 0.00 0.00 44.61 2.93
3850 4218 4.505922 CGGCAGAAGCAAAAATTACAAACA 59.494 37.500 0.00 0.00 44.61 2.83
3854 4222 8.720562 GGCAGAAGCAAAAATTACAAACATTAT 58.279 29.630 0.00 0.00 44.61 1.28
3860 4228 9.336171 AGCAAAAATTACAAACATTATTGTGGT 57.664 25.926 3.10 0.00 43.13 4.16
3866 4234 8.825667 ATTACAAACATTATTGTGGTTCCAAC 57.174 30.769 3.10 0.00 43.13 3.77
3873 4241 5.523438 TTATTGTGGTTCCAACTTCCAAC 57.477 39.130 0.00 0.00 32.82 3.77
3874 4242 2.516227 TGTGGTTCCAACTTCCAACA 57.484 45.000 0.00 0.00 32.82 3.33
3877 4245 3.772025 TGTGGTTCCAACTTCCAACAAAT 59.228 39.130 0.00 0.00 32.82 2.32
3880 4248 3.386402 GGTTCCAACTTCCAACAAATCCA 59.614 43.478 0.00 0.00 0.00 3.41
3887 4264 6.463614 CCAACTTCCAACAAATCCAATGGTAA 60.464 38.462 0.00 0.00 34.50 2.85
3946 4323 9.737844 ATATGGTGGTAGCAAAAATGAAAATTT 57.262 25.926 0.00 0.00 0.00 1.82
3948 4325 6.261826 TGGTGGTAGCAAAAATGAAAATTTGG 59.738 34.615 0.00 0.00 37.09 3.28
3979 4356 2.031157 CCATCAAACCAAACTGTCGGTC 60.031 50.000 2.68 0.00 33.17 4.79
3993 4370 2.268298 GTCGGTCGTAGCACAATTGAT 58.732 47.619 13.59 0.02 0.00 2.57
4017 4394 0.521735 GGTTCCAACATCTCGCAACC 59.478 55.000 0.00 0.00 0.00 3.77
4032 4409 1.227734 AACCGCGGTTGTAGCACTT 60.228 52.632 40.84 15.63 36.91 3.16
4033 4410 0.033781 AACCGCGGTTGTAGCACTTA 59.966 50.000 40.84 0.00 36.91 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.632855 TCAATTTGTGTAATGTGCGCA 57.367 38.095 5.66 5.66 0.00 6.09
1 2 4.204978 GCTATCAATTTGTGTAATGTGCGC 59.795 41.667 0.00 0.00 0.00 6.09
2 3 4.734854 GGCTATCAATTTGTGTAATGTGCG 59.265 41.667 0.00 0.00 0.00 5.34
3 4 5.649557 TGGCTATCAATTTGTGTAATGTGC 58.350 37.500 0.00 0.00 0.00 4.57
4 5 7.814107 AGTTTGGCTATCAATTTGTGTAATGTG 59.186 33.333 0.00 0.00 34.98 3.21
5 6 7.814107 CAGTTTGGCTATCAATTTGTGTAATGT 59.186 33.333 0.00 0.00 34.98 2.71
6 7 7.814107 ACAGTTTGGCTATCAATTTGTGTAATG 59.186 33.333 0.00 0.00 33.75 1.90
7 8 7.814107 CACAGTTTGGCTATCAATTTGTGTAAT 59.186 33.333 11.50 0.00 40.83 1.89
8 9 7.144661 CACAGTTTGGCTATCAATTTGTGTAA 58.855 34.615 11.50 0.00 40.83 2.41
9 10 6.294453 CCACAGTTTGGCTATCAATTTGTGTA 60.294 38.462 15.29 0.00 42.31 2.90
10 11 5.509501 CCACAGTTTGGCTATCAATTTGTGT 60.510 40.000 15.29 0.00 42.31 3.72
11 12 4.925054 CCACAGTTTGGCTATCAATTTGTG 59.075 41.667 12.21 12.21 42.84 3.33
12 13 5.138125 CCACAGTTTGGCTATCAATTTGT 57.862 39.130 0.00 0.00 39.07 2.83
43 44 2.981350 GGGCCTCGGTGCGAAAAA 60.981 61.111 0.84 0.00 34.74 1.94
49 50 0.968393 TAAAATTGGGGCCTCGGTGC 60.968 55.000 0.84 0.00 0.00 5.01
50 51 1.102978 CTAAAATTGGGGCCTCGGTG 58.897 55.000 0.84 0.00 0.00 4.94
51 52 0.683179 GCTAAAATTGGGGCCTCGGT 60.683 55.000 0.84 0.00 0.00 4.69
52 53 0.682855 TGCTAAAATTGGGGCCTCGG 60.683 55.000 0.84 0.00 0.00 4.63
53 54 1.402787 ATGCTAAAATTGGGGCCTCG 58.597 50.000 0.84 0.00 0.00 4.63
54 55 6.857437 AATATATGCTAAAATTGGGGCCTC 57.143 37.500 0.84 0.00 0.00 4.70
55 56 7.631510 AAAATATATGCTAAAATTGGGGCCT 57.368 32.000 0.84 0.00 0.00 5.19
83 84 1.811645 AAATTTTGGACCCCGGTGCG 61.812 55.000 0.00 0.00 39.39 5.34
84 85 0.037697 GAAATTTTGGACCCCGGTGC 60.038 55.000 0.00 0.00 36.97 5.01
85 86 1.272212 CAGAAATTTTGGACCCCGGTG 59.728 52.381 0.00 0.00 0.00 4.94
86 87 1.627864 CAGAAATTTTGGACCCCGGT 58.372 50.000 0.00 0.00 0.00 5.28
87 88 0.894835 CCAGAAATTTTGGACCCCGG 59.105 55.000 11.71 0.00 37.96 5.73
88 89 1.818674 CTCCAGAAATTTTGGACCCCG 59.181 52.381 14.39 5.54 39.74 5.73
89 90 2.826128 GTCTCCAGAAATTTTGGACCCC 59.174 50.000 14.39 5.74 39.74 4.95
90 91 2.488153 CGTCTCCAGAAATTTTGGACCC 59.512 50.000 14.39 9.14 39.74 4.46
91 92 2.488153 CCGTCTCCAGAAATTTTGGACC 59.512 50.000 14.39 9.38 39.74 4.46
92 93 2.095212 GCCGTCTCCAGAAATTTTGGAC 60.095 50.000 14.39 8.52 39.74 4.02
93 94 2.159382 GCCGTCTCCAGAAATTTTGGA 58.841 47.619 16.33 16.33 42.30 3.53
94 95 1.202348 GGCCGTCTCCAGAAATTTTGG 59.798 52.381 11.15 11.15 37.04 3.28
95 96 1.202348 GGGCCGTCTCCAGAAATTTTG 59.798 52.381 0.00 0.00 0.00 2.44
96 97 1.075536 AGGGCCGTCTCCAGAAATTTT 59.924 47.619 0.00 0.00 0.00 1.82
97 98 0.698818 AGGGCCGTCTCCAGAAATTT 59.301 50.000 0.00 0.00 0.00 1.82
98 99 0.035056 CAGGGCCGTCTCCAGAAATT 60.035 55.000 0.00 0.00 0.00 1.82
99 100 1.604378 CAGGGCCGTCTCCAGAAAT 59.396 57.895 0.00 0.00 0.00 2.17
100 101 2.592993 CCAGGGCCGTCTCCAGAAA 61.593 63.158 0.00 0.00 0.00 2.52
101 102 2.822643 ATCCAGGGCCGTCTCCAGAA 62.823 60.000 0.00 0.00 0.00 3.02
102 103 1.944896 TATCCAGGGCCGTCTCCAGA 61.945 60.000 0.00 0.00 0.00 3.86
103 104 1.457643 TATCCAGGGCCGTCTCCAG 60.458 63.158 0.00 0.00 0.00 3.86
104 105 1.457643 CTATCCAGGGCCGTCTCCA 60.458 63.158 0.00 0.00 0.00 3.86
105 106 0.759436 TTCTATCCAGGGCCGTCTCC 60.759 60.000 0.00 0.00 0.00 3.71
106 107 0.676736 CTTCTATCCAGGGCCGTCTC 59.323 60.000 0.00 0.00 0.00 3.36
107 108 0.032017 ACTTCTATCCAGGGCCGTCT 60.032 55.000 0.00 0.00 0.00 4.18
108 109 1.614413 CTACTTCTATCCAGGGCCGTC 59.386 57.143 0.00 0.00 0.00 4.79
109 110 1.705873 CTACTTCTATCCAGGGCCGT 58.294 55.000 0.00 0.00 0.00 5.68
110 111 0.318762 GCTACTTCTATCCAGGGCCG 59.681 60.000 0.00 0.00 0.00 6.13
111 112 0.318762 CGCTACTTCTATCCAGGGCC 59.681 60.000 0.00 0.00 0.00 5.80
112 113 1.000052 GTCGCTACTTCTATCCAGGGC 60.000 57.143 0.00 0.00 0.00 5.19
113 114 2.294791 CTGTCGCTACTTCTATCCAGGG 59.705 54.545 0.00 0.00 0.00 4.45
114 115 3.215151 TCTGTCGCTACTTCTATCCAGG 58.785 50.000 0.00 0.00 0.00 4.45
115 116 4.277174 ACATCTGTCGCTACTTCTATCCAG 59.723 45.833 0.00 0.00 0.00 3.86
116 117 4.207955 ACATCTGTCGCTACTTCTATCCA 58.792 43.478 0.00 0.00 0.00 3.41
117 118 4.839668 ACATCTGTCGCTACTTCTATCC 57.160 45.455 0.00 0.00 0.00 2.59
118 119 4.442733 GCAACATCTGTCGCTACTTCTATC 59.557 45.833 0.00 0.00 0.00 2.08
119 120 4.363999 GCAACATCTGTCGCTACTTCTAT 58.636 43.478 0.00 0.00 0.00 1.98
120 121 3.428999 GGCAACATCTGTCGCTACTTCTA 60.429 47.826 0.00 0.00 0.00 2.10
121 122 2.611518 GCAACATCTGTCGCTACTTCT 58.388 47.619 0.00 0.00 0.00 2.85
122 123 1.661112 GGCAACATCTGTCGCTACTTC 59.339 52.381 0.00 0.00 0.00 3.01
123 124 1.276421 AGGCAACATCTGTCGCTACTT 59.724 47.619 0.00 0.00 41.41 2.24
124 125 0.898320 AGGCAACATCTGTCGCTACT 59.102 50.000 0.00 0.00 41.41 2.57
125 126 2.099263 TCTAGGCAACATCTGTCGCTAC 59.901 50.000 0.00 0.00 41.41 3.58
126 127 2.375146 TCTAGGCAACATCTGTCGCTA 58.625 47.619 0.00 0.00 41.41 4.26
127 128 1.186200 TCTAGGCAACATCTGTCGCT 58.814 50.000 0.00 0.00 41.41 4.93
128 129 1.863454 CATCTAGGCAACATCTGTCGC 59.137 52.381 0.00 0.00 41.41 5.19
129 130 2.159043 ACCATCTAGGCAACATCTGTCG 60.159 50.000 0.00 0.00 43.14 4.35
130 131 3.201290 CACCATCTAGGCAACATCTGTC 58.799 50.000 0.00 0.00 43.14 3.51
131 132 2.092753 CCACCATCTAGGCAACATCTGT 60.093 50.000 0.00 0.00 43.14 3.41
132 133 2.569059 CCACCATCTAGGCAACATCTG 58.431 52.381 0.00 0.00 43.14 2.90
141 142 3.853355 AATCTGAAGCCACCATCTAGG 57.147 47.619 0.00 0.00 45.67 3.02
142 143 5.923204 AGTAAATCTGAAGCCACCATCTAG 58.077 41.667 0.00 0.00 0.00 2.43
143 144 5.957771 AGTAAATCTGAAGCCACCATCTA 57.042 39.130 0.00 0.00 0.00 1.98
144 145 4.851639 AGTAAATCTGAAGCCACCATCT 57.148 40.909 0.00 0.00 0.00 2.90
145 146 6.543831 ACAATAGTAAATCTGAAGCCACCATC 59.456 38.462 0.00 0.00 0.00 3.51
146 147 6.426587 ACAATAGTAAATCTGAAGCCACCAT 58.573 36.000 0.00 0.00 0.00 3.55
147 148 5.815581 ACAATAGTAAATCTGAAGCCACCA 58.184 37.500 0.00 0.00 0.00 4.17
148 149 8.451908 AATACAATAGTAAATCTGAAGCCACC 57.548 34.615 0.00 0.00 33.13 4.61
201 202 9.745880 CTAGACGATACATACAACCACTTTATT 57.254 33.333 0.00 0.00 0.00 1.40
202 203 9.128404 TCTAGACGATACATACAACCACTTTAT 57.872 33.333 0.00 0.00 0.00 1.40
203 204 8.400947 GTCTAGACGATACATACAACCACTTTA 58.599 37.037 7.22 0.00 0.00 1.85
204 205 7.256286 GTCTAGACGATACATACAACCACTTT 58.744 38.462 7.22 0.00 0.00 2.66
205 206 6.793349 GTCTAGACGATACATACAACCACTT 58.207 40.000 7.22 0.00 0.00 3.16
206 207 6.374565 GTCTAGACGATACATACAACCACT 57.625 41.667 7.22 0.00 0.00 4.00
222 223 1.598601 CTCCGGCTTCTACGTCTAGAC 59.401 57.143 13.18 13.18 0.00 2.59
223 224 1.474677 CCTCCGGCTTCTACGTCTAGA 60.475 57.143 0.00 0.00 0.00 2.43
224 225 0.945813 CCTCCGGCTTCTACGTCTAG 59.054 60.000 0.00 0.00 0.00 2.43
225 226 0.254178 ACCTCCGGCTTCTACGTCTA 59.746 55.000 0.00 0.00 0.00 2.59
226 227 0.254178 TACCTCCGGCTTCTACGTCT 59.746 55.000 0.00 0.00 0.00 4.18
227 228 1.316651 ATACCTCCGGCTTCTACGTC 58.683 55.000 0.00 0.00 0.00 4.34
228 229 1.680207 GAATACCTCCGGCTTCTACGT 59.320 52.381 0.00 0.00 0.00 3.57
229 230 1.000496 GGAATACCTCCGGCTTCTACG 60.000 57.143 0.00 0.00 33.37 3.51
230 231 2.816204 GGAATACCTCCGGCTTCTAC 57.184 55.000 0.00 0.00 33.37 2.59
239 240 5.722021 TTTTGAAAAGCAGGAATACCTCC 57.278 39.130 0.00 0.00 45.94 4.30
280 281 2.224329 TGGACTGCCTACTGCGTAAAAA 60.224 45.455 0.00 0.00 45.60 1.94
281 282 1.345089 TGGACTGCCTACTGCGTAAAA 59.655 47.619 0.00 0.00 45.60 1.52
282 283 0.970640 TGGACTGCCTACTGCGTAAA 59.029 50.000 0.00 0.00 45.60 2.01
283 284 1.191535 ATGGACTGCCTACTGCGTAA 58.808 50.000 0.00 0.00 45.60 3.18
284 285 1.191535 AATGGACTGCCTACTGCGTA 58.808 50.000 0.00 0.00 45.60 4.42
285 286 1.191535 TAATGGACTGCCTACTGCGT 58.808 50.000 0.00 0.00 45.60 5.24
286 287 2.309528 TTAATGGACTGCCTACTGCG 57.690 50.000 0.00 0.00 45.60 5.18
287 288 3.545703 ACATTAATGGACTGCCTACTGC 58.454 45.455 19.37 0.00 41.77 4.40
288 289 5.295292 CAGAACATTAATGGACTGCCTACTG 59.705 44.000 19.37 10.14 32.13 2.74
289 290 5.045578 ACAGAACATTAATGGACTGCCTACT 60.046 40.000 27.90 15.33 38.02 2.57
290 291 5.186198 ACAGAACATTAATGGACTGCCTAC 58.814 41.667 27.90 9.69 38.02 3.18
291 292 5.435686 ACAGAACATTAATGGACTGCCTA 57.564 39.130 27.90 0.00 38.02 3.93
292 293 4.307032 ACAGAACATTAATGGACTGCCT 57.693 40.909 27.90 16.27 38.02 4.75
293 294 6.699575 AATACAGAACATTAATGGACTGCC 57.300 37.500 27.90 11.09 38.02 4.85
294 295 8.438676 AGTAATACAGAACATTAATGGACTGC 57.561 34.615 27.90 18.27 38.02 4.40
296 297 9.959721 ACAAGTAATACAGAACATTAATGGACT 57.040 29.630 19.37 14.00 0.00 3.85
297 298 9.988350 CACAAGTAATACAGAACATTAATGGAC 57.012 33.333 19.37 12.12 0.00 4.02
298 299 9.733556 ACACAAGTAATACAGAACATTAATGGA 57.266 29.630 19.37 0.00 0.00 3.41
306 307 9.781834 CAAGAAAAACACAAGTAATACAGAACA 57.218 29.630 0.00 0.00 0.00 3.18
307 308 9.233232 CCAAGAAAAACACAAGTAATACAGAAC 57.767 33.333 0.00 0.00 0.00 3.01
308 309 8.962679 ACCAAGAAAAACACAAGTAATACAGAA 58.037 29.630 0.00 0.00 0.00 3.02
309 310 8.514330 ACCAAGAAAAACACAAGTAATACAGA 57.486 30.769 0.00 0.00 0.00 3.41
314 315 9.541143 CCATTAACCAAGAAAAACACAAGTAAT 57.459 29.630 0.00 0.00 0.00 1.89
315 316 8.532819 ACCATTAACCAAGAAAAACACAAGTAA 58.467 29.630 0.00 0.00 0.00 2.24
316 317 8.068892 ACCATTAACCAAGAAAAACACAAGTA 57.931 30.769 0.00 0.00 0.00 2.24
317 318 6.941857 ACCATTAACCAAGAAAAACACAAGT 58.058 32.000 0.00 0.00 0.00 3.16
318 319 7.841915 AACCATTAACCAAGAAAAACACAAG 57.158 32.000 0.00 0.00 0.00 3.16
319 320 8.622948 AAAACCATTAACCAAGAAAAACACAA 57.377 26.923 0.00 0.00 0.00 3.33
320 321 9.892130 ATAAAACCATTAACCAAGAAAAACACA 57.108 25.926 0.00 0.00 0.00 3.72
332 333 9.093970 GCCAGTGAAAATATAAAACCATTAACC 57.906 33.333 0.00 0.00 0.00 2.85
333 334 9.646427 TGCCAGTGAAAATATAAAACCATTAAC 57.354 29.630 0.00 0.00 0.00 2.01
334 335 9.868277 CTGCCAGTGAAAATATAAAACCATTAA 57.132 29.630 0.00 0.00 0.00 1.40
335 336 7.978975 GCTGCCAGTGAAAATATAAAACCATTA 59.021 33.333 0.00 0.00 0.00 1.90
336 337 6.818142 GCTGCCAGTGAAAATATAAAACCATT 59.182 34.615 0.00 0.00 0.00 3.16
337 338 6.070881 TGCTGCCAGTGAAAATATAAAACCAT 60.071 34.615 0.00 0.00 0.00 3.55
338 339 5.244851 TGCTGCCAGTGAAAATATAAAACCA 59.755 36.000 0.00 0.00 0.00 3.67
339 340 5.719173 TGCTGCCAGTGAAAATATAAAACC 58.281 37.500 0.00 0.00 0.00 3.27
340 341 7.650834 TTTGCTGCCAGTGAAAATATAAAAC 57.349 32.000 0.00 0.00 0.00 2.43
341 342 8.719648 CAATTTGCTGCCAGTGAAAATATAAAA 58.280 29.630 0.00 0.00 0.00 1.52
342 343 7.148440 GCAATTTGCTGCCAGTGAAAATATAAA 60.148 33.333 14.11 0.00 40.96 1.40
343 344 6.313411 GCAATTTGCTGCCAGTGAAAATATAA 59.687 34.615 14.11 0.00 40.96 0.98
344 345 5.811613 GCAATTTGCTGCCAGTGAAAATATA 59.188 36.000 14.11 0.00 40.96 0.86
345 346 4.632688 GCAATTTGCTGCCAGTGAAAATAT 59.367 37.500 14.11 0.00 40.96 1.28
346 347 3.995705 GCAATTTGCTGCCAGTGAAAATA 59.004 39.130 14.11 0.00 40.96 1.40
347 348 2.809696 GCAATTTGCTGCCAGTGAAAAT 59.190 40.909 14.11 0.00 40.96 1.82
348 349 2.211806 GCAATTTGCTGCCAGTGAAAA 58.788 42.857 14.11 0.00 40.96 2.29
349 350 1.138464 TGCAATTTGCTGCCAGTGAAA 59.862 42.857 21.19 0.00 45.31 2.69
350 351 0.751452 TGCAATTTGCTGCCAGTGAA 59.249 45.000 21.19 0.00 45.31 3.18
351 352 0.970640 ATGCAATTTGCTGCCAGTGA 59.029 45.000 21.19 0.00 45.31 3.41
352 353 1.075542 CATGCAATTTGCTGCCAGTG 58.924 50.000 21.19 7.68 45.31 3.66
353 354 0.682852 ACATGCAATTTGCTGCCAGT 59.317 45.000 21.19 10.04 45.31 4.00
354 355 1.075542 CACATGCAATTTGCTGCCAG 58.924 50.000 21.19 9.48 45.31 4.85
355 356 0.393448 ACACATGCAATTTGCTGCCA 59.607 45.000 21.19 2.34 45.31 4.92
356 357 1.195900 CAACACATGCAATTTGCTGCC 59.804 47.619 21.19 0.00 45.31 4.85
357 358 1.868498 ACAACACATGCAATTTGCTGC 59.132 42.857 21.19 0.00 45.31 5.25
358 359 4.539509 AAACAACACATGCAATTTGCTG 57.460 36.364 21.19 17.63 45.31 4.41
359 360 4.395542 ACAAAACAACACATGCAATTTGCT 59.604 33.333 21.19 5.37 45.31 3.91
360 361 4.660105 ACAAAACAACACATGCAATTTGC 58.340 34.783 14.49 14.49 45.29 3.68
361 362 7.747799 TGTTTACAAAACAACACATGCAATTTG 59.252 29.630 2.85 0.00 36.88 2.32
362 363 7.810658 TGTTTACAAAACAACACATGCAATTT 58.189 26.923 2.85 0.00 0.00 1.82
363 364 7.369803 TGTTTACAAAACAACACATGCAATT 57.630 28.000 2.85 0.00 0.00 2.32
364 365 6.974932 TGTTTACAAAACAACACATGCAAT 57.025 29.167 2.85 0.00 0.00 3.56
365 366 6.425114 ACTTGTTTACAAAACAACACATGCAA 59.575 30.769 12.60 0.00 35.45 4.08
366 367 5.928839 ACTTGTTTACAAAACAACACATGCA 59.071 32.000 12.60 0.00 35.45 3.96
367 368 6.401955 ACTTGTTTACAAAACAACACATGC 57.598 33.333 12.60 0.00 35.45 4.06
368 369 8.682128 AGTACTTGTTTACAAAACAACACATG 57.318 30.769 12.60 6.81 35.45 3.21
369 370 7.971722 GGAGTACTTGTTTACAAAACAACACAT 59.028 33.333 12.60 2.28 35.45 3.21
370 371 7.306953 GGAGTACTTGTTTACAAAACAACACA 58.693 34.615 12.60 0.92 35.45 3.72
371 372 6.748658 GGGAGTACTTGTTTACAAAACAACAC 59.251 38.462 12.60 12.71 35.45 3.32
372 373 6.660094 AGGGAGTACTTGTTTACAAAACAACA 59.340 34.615 12.60 3.25 35.45 3.33
373 374 7.092137 AGGGAGTACTTGTTTACAAAACAAC 57.908 36.000 12.60 5.96 35.45 3.32
374 375 6.319405 GGAGGGAGTACTTGTTTACAAAACAA 59.681 38.462 15.07 15.07 37.76 2.83
375 376 5.824097 GGAGGGAGTACTTGTTTACAAAACA 59.176 40.000 0.00 1.21 35.15 2.83
376 377 5.824097 TGGAGGGAGTACTTGTTTACAAAAC 59.176 40.000 0.00 0.00 35.15 2.43
377 378 6.003859 TGGAGGGAGTACTTGTTTACAAAA 57.996 37.500 0.00 0.00 35.15 2.44
378 379 5.633655 TGGAGGGAGTACTTGTTTACAAA 57.366 39.130 0.00 0.00 35.15 2.83
379 380 5.836024 ATGGAGGGAGTACTTGTTTACAA 57.164 39.130 0.00 0.00 0.00 2.41
380 381 6.938698 TTATGGAGGGAGTACTTGTTTACA 57.061 37.500 0.00 0.00 0.00 2.41
381 382 7.392418 AGTTTATGGAGGGAGTACTTGTTTAC 58.608 38.462 0.00 0.00 0.00 2.01
382 383 7.563724 AGTTTATGGAGGGAGTACTTGTTTA 57.436 36.000 0.00 0.00 0.00 2.01
383 384 6.449830 AGTTTATGGAGGGAGTACTTGTTT 57.550 37.500 0.00 0.00 0.00 2.83
384 385 7.563724 TTAGTTTATGGAGGGAGTACTTGTT 57.436 36.000 0.00 0.00 0.00 2.83
385 386 7.750947 ATTAGTTTATGGAGGGAGTACTTGT 57.249 36.000 0.00 0.00 0.00 3.16
391 392 8.817876 GCTCTTATATTAGTTTATGGAGGGAGT 58.182 37.037 0.00 0.00 0.00 3.85
392 393 9.041354 AGCTCTTATATTAGTTTATGGAGGGAG 57.959 37.037 0.00 0.00 0.00 4.30
393 394 8.974292 AGCTCTTATATTAGTTTATGGAGGGA 57.026 34.615 0.00 0.00 0.00 4.20
411 412 9.515226 ACCAAAATAGTGATGTAAAAGCTCTTA 57.485 29.630 0.00 0.00 0.00 2.10
412 413 8.409358 ACCAAAATAGTGATGTAAAAGCTCTT 57.591 30.769 0.00 0.00 0.00 2.85
413 414 9.686683 ATACCAAAATAGTGATGTAAAAGCTCT 57.313 29.630 0.00 0.00 0.00 4.09
497 498 9.647918 AGTCACTCTTATCTACTCCATGATTAA 57.352 33.333 0.00 0.00 0.00 1.40
709 881 9.314321 ACTTATGTTTATTCGATAACTCCACAG 57.686 33.333 0.00 0.00 0.00 3.66
718 890 9.825109 TCATGTCCAACTTATGTTTATTCGATA 57.175 29.630 0.00 0.00 33.52 2.92
719 891 8.731275 TCATGTCCAACTTATGTTTATTCGAT 57.269 30.769 0.00 0.00 33.52 3.59
721 893 8.196802 TCTCATGTCCAACTTATGTTTATTCG 57.803 34.615 0.00 0.00 33.52 3.34
735 913 4.024133 CGACAACACAAATCTCATGTCCAA 60.024 41.667 0.00 0.00 35.04 3.53
842 1021 0.469917 CCGCTTCCTATGGTGATGGT 59.530 55.000 0.00 0.00 0.00 3.55
845 1024 1.202698 GCTTCCGCTTCCTATGGTGAT 60.203 52.381 0.00 0.00 0.00 3.06
879 1058 1.960040 AACTGCCCGATCGAGCATCA 61.960 55.000 24.91 2.07 38.56 3.07
880 1059 1.227380 AACTGCCCGATCGAGCATC 60.227 57.895 24.91 5.07 38.56 3.91
881 1060 1.522355 CAACTGCCCGATCGAGCAT 60.522 57.895 24.91 8.42 38.56 3.79
994 1213 1.822990 AGCACAAGAAGCCATGGATTG 59.177 47.619 22.29 17.27 0.00 2.67
995 1214 1.822990 CAGCACAAGAAGCCATGGATT 59.177 47.619 16.76 16.76 0.00 3.01
999 1223 1.214589 GCCAGCACAAGAAGCCATG 59.785 57.895 0.00 0.00 0.00 3.66
1008 1232 4.182433 TCACCACCGCCAGCACAA 62.182 61.111 0.00 0.00 0.00 3.33
1452 1676 0.037232 CGTCCTGGTGGAAGAACCTC 60.037 60.000 0.00 0.00 45.18 3.85
1874 2098 6.263168 ACCATAAGTAGGTGGTACGTATGTAC 59.737 42.308 15.66 15.66 45.48 2.90
1875 2099 6.364701 ACCATAAGTAGGTGGTACGTATGTA 58.635 40.000 0.00 0.00 45.48 2.29
1876 2100 5.203528 ACCATAAGTAGGTGGTACGTATGT 58.796 41.667 0.00 0.00 45.48 2.29
1877 2101 5.779529 ACCATAAGTAGGTGGTACGTATG 57.220 43.478 0.00 9.73 46.49 2.39
1885 2109 4.771114 TCATTGGACCATAAGTAGGTGG 57.229 45.455 0.00 0.00 40.09 4.61
1886 2110 5.586243 CAGTTCATTGGACCATAAGTAGGTG 59.414 44.000 0.00 0.00 40.09 4.00
1939 2165 1.097547 CATGGCGAAAGAGCGGGAAT 61.098 55.000 0.00 0.00 38.18 3.01
1953 2179 1.199327 CATCATCGCAGATTCCATGGC 59.801 52.381 6.96 0.00 45.12 4.40
1955 2181 6.049790 AGATATCATCATCGCAGATTCCATG 58.950 40.000 5.32 0.00 45.12 3.66
1969 2195 5.203528 TCCATGGCGATAGAGATATCATCA 58.796 41.667 6.96 0.00 39.76 3.07
1970 2196 5.781210 TCCATGGCGATAGAGATATCATC 57.219 43.478 6.96 0.00 39.76 2.92
1971 2197 6.464039 CCATTCCATGGCGATAGAGATATCAT 60.464 42.308 6.96 0.00 44.70 2.45
1972 2198 5.163374 CCATTCCATGGCGATAGAGATATCA 60.163 44.000 6.96 0.00 44.70 2.15
1973 2199 5.295950 CCATTCCATGGCGATAGAGATATC 58.704 45.833 6.96 0.00 44.70 1.63
1974 2200 5.287674 CCATTCCATGGCGATAGAGATAT 57.712 43.478 6.96 0.00 44.70 1.63
1975 2201 4.743057 CCATTCCATGGCGATAGAGATA 57.257 45.455 6.96 0.00 44.70 1.98
1976 2202 3.623906 CCATTCCATGGCGATAGAGAT 57.376 47.619 6.96 0.00 44.70 2.75
1989 2215 2.912956 AGAACTCCAAGCTACCATTCCA 59.087 45.455 0.00 0.00 0.00 3.53
1996 2222 3.686916 AGAACCAGAACTCCAAGCTAC 57.313 47.619 0.00 0.00 0.00 3.58
2027 2253 3.558931 AGATTGCCCACGATCACAATA 57.441 42.857 0.00 0.00 38.95 1.90
2045 2271 0.250295 CAACCTGAGCGTTGGGAAGA 60.250 55.000 6.07 0.00 39.58 2.87
2112 2342 0.662374 CGTTTTGCTCAGCTTGGCAG 60.662 55.000 0.00 0.00 39.68 4.85
2138 2414 8.563732 AGCTAGTACTACGTATTTACTAAAGCC 58.436 37.037 21.72 13.20 31.76 4.35
2162 2438 8.614346 GTCAGTGCCACTATATAGTATACTAGC 58.386 40.741 15.03 13.18 34.13 3.42
2163 2439 9.668497 TGTCAGTGCCACTATATAGTATACTAG 57.332 37.037 15.03 8.54 34.13 2.57
2166 2442 8.740906 ACATGTCAGTGCCACTATATAGTATAC 58.259 37.037 15.03 13.28 34.13 1.47
2167 2443 8.879427 ACATGTCAGTGCCACTATATAGTATA 57.121 34.615 15.03 2.41 34.13 1.47
2168 2444 7.782897 ACATGTCAGTGCCACTATATAGTAT 57.217 36.000 15.03 0.00 34.13 2.12
2171 2447 6.201615 CACAACATGTCAGTGCCACTATATAG 59.798 42.308 15.68 8.27 0.00 1.31
2172 2448 6.048509 CACAACATGTCAGTGCCACTATATA 58.951 40.000 15.68 0.00 0.00 0.86
2173 2449 4.877823 CACAACATGTCAGTGCCACTATAT 59.122 41.667 15.68 0.00 0.00 0.86
2180 2456 3.254166 AGAAATCACAACATGTCAGTGCC 59.746 43.478 20.63 12.30 33.44 5.01
2334 2613 2.859538 CAACCATTGGATTAATGCGCAC 59.140 45.455 14.90 0.00 43.90 5.34
2351 2630 2.743928 CCTCACGCTGCTCCAACC 60.744 66.667 0.00 0.00 0.00 3.77
2352 2631 2.743928 CCCTCACGCTGCTCCAAC 60.744 66.667 0.00 0.00 0.00 3.77
2452 2731 2.032681 GCCACGAAGAAGGCCACT 59.967 61.111 5.01 0.00 43.88 4.00
2568 2848 2.031012 TGGACGCTGTTGAGCAGG 59.969 61.111 0.00 0.00 46.62 4.85
2731 3011 0.387622 ACAAAGACATGCATGCACGC 60.388 50.000 25.37 15.10 0.00 5.34
2762 3044 0.668401 ACGGTCGGTTTTAAGCTCGG 60.668 55.000 0.00 0.00 0.00 4.63
2791 3090 2.997986 CCTGTTGCATTTCATCCAAAGC 59.002 45.455 0.00 0.00 0.00 3.51
2802 3105 0.615544 CCCACATCCCCTGTTGCATT 60.616 55.000 0.00 0.00 35.29 3.56
2853 3156 0.040067 TGATCGCGATCAGGATCACG 60.040 55.000 40.14 12.18 42.92 4.35
3030 3378 2.687418 GATCCTGGGCGATGCACCAT 62.687 60.000 0.00 0.00 35.93 3.55
3031 3379 3.405093 GATCCTGGGCGATGCACCA 62.405 63.158 0.00 0.00 35.05 4.17
3032 3380 2.592861 GATCCTGGGCGATGCACC 60.593 66.667 0.00 0.00 0.00 5.01
3102 3450 6.687105 GCCTAACACGCACAAGATTTAATTAG 59.313 38.462 0.00 0.00 0.00 1.73
3189 3541 4.962122 GCGGTGCTGCGTGTTGTG 62.962 66.667 0.00 0.00 0.00 3.33
3200 3553 2.486966 GCAAGGATCTTGCGGTGC 59.513 61.111 15.44 0.00 35.58 5.01
3263 3620 1.609072 CACTCTCAAGTCTCGGTCACA 59.391 52.381 0.00 0.00 31.71 3.58
3269 3626 0.389166 GGCACCACTCTCAAGTCTCG 60.389 60.000 0.00 0.00 31.71 4.04
3330 3695 5.464389 GCGTCTAGTACTCACCAAAAGAAAA 59.536 40.000 0.00 0.00 0.00 2.29
3334 3699 3.251571 GGCGTCTAGTACTCACCAAAAG 58.748 50.000 0.00 0.00 0.00 2.27
3335 3700 2.028748 GGGCGTCTAGTACTCACCAAAA 60.029 50.000 0.00 0.00 0.00 2.44
3339 3704 1.726265 CGGGCGTCTAGTACTCACC 59.274 63.158 0.00 0.00 0.00 4.02
3340 3705 1.063811 GCGGGCGTCTAGTACTCAC 59.936 63.158 0.00 0.00 0.00 3.51
3341 3706 2.466982 CGCGGGCGTCTAGTACTCA 61.467 63.158 0.00 0.00 34.35 3.41
3342 3707 2.327244 CGCGGGCGTCTAGTACTC 59.673 66.667 0.00 0.00 34.35 2.59
3343 3708 3.885521 GCGCGGGCGTCTAGTACT 61.886 66.667 9.31 0.00 42.09 2.73
3358 3723 3.197569 GATGTGATCGAACGGCGCG 62.198 63.158 6.90 0.00 40.61 6.86
3359 3724 2.621000 GATGTGATCGAACGGCGC 59.379 61.111 6.90 0.00 40.61 6.53
3368 3733 3.677190 ACGAGTCTGTACGATGTGATC 57.323 47.619 0.00 0.00 0.00 2.92
3369 3734 3.485381 CGAACGAGTCTGTACGATGTGAT 60.485 47.826 0.00 0.00 0.00 3.06
3370 3735 2.159747 CGAACGAGTCTGTACGATGTGA 60.160 50.000 0.00 0.00 0.00 3.58
3371 3736 2.159747 TCGAACGAGTCTGTACGATGTG 60.160 50.000 0.00 0.00 0.00 3.21
3372 3737 2.071540 TCGAACGAGTCTGTACGATGT 58.928 47.619 0.00 0.00 0.00 3.06
3373 3738 2.800694 TCGAACGAGTCTGTACGATG 57.199 50.000 0.00 0.00 0.00 3.84
3374 3739 2.934553 TGATCGAACGAGTCTGTACGAT 59.065 45.455 0.00 0.00 41.83 3.73
3375 3740 2.093310 GTGATCGAACGAGTCTGTACGA 59.907 50.000 2.94 0.00 0.00 3.43
3376 3741 2.159747 TGTGATCGAACGAGTCTGTACG 60.160 50.000 2.94 0.00 0.00 3.67
3377 3742 3.466712 TGTGATCGAACGAGTCTGTAC 57.533 47.619 2.94 0.00 0.00 2.90
3378 3743 4.874396 ACTATGTGATCGAACGAGTCTGTA 59.126 41.667 2.94 0.00 0.00 2.74
3379 3744 3.690139 ACTATGTGATCGAACGAGTCTGT 59.310 43.478 2.94 0.00 0.00 3.41
3380 3745 4.280101 ACTATGTGATCGAACGAGTCTG 57.720 45.455 2.94 0.00 0.00 3.51
3381 3746 4.201930 GGAACTATGTGATCGAACGAGTCT 60.202 45.833 2.94 0.00 0.00 3.24
3382 3747 4.036352 GGAACTATGTGATCGAACGAGTC 58.964 47.826 2.94 2.28 0.00 3.36
3383 3748 3.181489 GGGAACTATGTGATCGAACGAGT 60.181 47.826 2.94 0.00 0.00 4.18
3384 3749 3.066900 AGGGAACTATGTGATCGAACGAG 59.933 47.826 2.94 0.00 40.61 4.18
3385 3750 3.021695 AGGGAACTATGTGATCGAACGA 58.978 45.455 0.00 0.00 40.61 3.85
3386 3751 3.438297 AGGGAACTATGTGATCGAACG 57.562 47.619 0.00 0.00 40.61 3.95
3387 3752 4.571176 GGAAAGGGAACTATGTGATCGAAC 59.429 45.833 0.00 0.00 42.68 3.95
3388 3753 4.469945 AGGAAAGGGAACTATGTGATCGAA 59.530 41.667 0.00 0.00 42.68 3.71
3389 3754 4.030913 AGGAAAGGGAACTATGTGATCGA 58.969 43.478 0.00 0.00 42.68 3.59
3390 3755 4.100189 AGAGGAAAGGGAACTATGTGATCG 59.900 45.833 0.00 0.00 42.68 3.69
3391 3756 5.363939 CAGAGGAAAGGGAACTATGTGATC 58.636 45.833 0.00 0.00 42.68 2.92
3392 3757 4.164988 CCAGAGGAAAGGGAACTATGTGAT 59.835 45.833 0.00 0.00 42.68 3.06
3393 3758 3.519510 CCAGAGGAAAGGGAACTATGTGA 59.480 47.826 0.00 0.00 42.68 3.58
3394 3759 3.878778 CCAGAGGAAAGGGAACTATGTG 58.121 50.000 0.00 0.00 42.68 3.21
3395 3760 2.239907 GCCAGAGGAAAGGGAACTATGT 59.760 50.000 0.00 0.00 42.68 2.29
3396 3761 2.507471 AGCCAGAGGAAAGGGAACTATG 59.493 50.000 0.00 0.00 42.68 2.23
3397 3762 2.774809 GAGCCAGAGGAAAGGGAACTAT 59.225 50.000 0.00 0.00 42.68 2.12
3398 3763 2.188817 GAGCCAGAGGAAAGGGAACTA 58.811 52.381 0.00 0.00 42.68 2.24
3400 3765 0.988063 AGAGCCAGAGGAAAGGGAAC 59.012 55.000 0.00 0.00 0.00 3.62
3401 3766 1.280457 GAGAGCCAGAGGAAAGGGAA 58.720 55.000 0.00 0.00 0.00 3.97
3402 3767 0.618968 GGAGAGCCAGAGGAAAGGGA 60.619 60.000 0.00 0.00 0.00 4.20
3403 3768 1.911471 GGAGAGCCAGAGGAAAGGG 59.089 63.158 0.00 0.00 0.00 3.95
3404 3769 1.261238 ACGGAGAGCCAGAGGAAAGG 61.261 60.000 0.00 0.00 0.00 3.11
3405 3770 0.174617 GACGGAGAGCCAGAGGAAAG 59.825 60.000 0.00 0.00 0.00 2.62
3406 3771 0.541998 TGACGGAGAGCCAGAGGAAA 60.542 55.000 0.00 0.00 0.00 3.13
3407 3772 1.076727 TGACGGAGAGCCAGAGGAA 59.923 57.895 0.00 0.00 0.00 3.36
3408 3773 1.679305 GTGACGGAGAGCCAGAGGA 60.679 63.158 0.00 0.00 0.00 3.71
3409 3774 2.716017 GGTGACGGAGAGCCAGAGG 61.716 68.421 0.00 0.00 0.00 3.69
3410 3775 2.716017 GGGTGACGGAGAGCCAGAG 61.716 68.421 0.00 0.00 0.00 3.35
3411 3776 1.859841 TAGGGTGACGGAGAGCCAGA 61.860 60.000 0.00 0.00 33.09 3.86
3412 3777 1.379977 TAGGGTGACGGAGAGCCAG 60.380 63.158 0.00 0.00 33.09 4.85
3413 3778 1.681327 GTAGGGTGACGGAGAGCCA 60.681 63.158 0.00 0.00 33.09 4.75
3414 3779 1.043673 ATGTAGGGTGACGGAGAGCC 61.044 60.000 0.00 0.00 0.00 4.70
3415 3780 0.386113 GATGTAGGGTGACGGAGAGC 59.614 60.000 0.00 0.00 0.00 4.09
3416 3781 1.033574 GGATGTAGGGTGACGGAGAG 58.966 60.000 0.00 0.00 0.00 3.20
3417 3782 0.629596 AGGATGTAGGGTGACGGAGA 59.370 55.000 0.00 0.00 0.00 3.71
3418 3783 1.033574 GAGGATGTAGGGTGACGGAG 58.966 60.000 0.00 0.00 0.00 4.63
3419 3784 0.629596 AGAGGATGTAGGGTGACGGA 59.370 55.000 0.00 0.00 0.00 4.69
3420 3785 1.033574 GAGAGGATGTAGGGTGACGG 58.966 60.000 0.00 0.00 0.00 4.79
3421 3786 1.033574 GGAGAGGATGTAGGGTGACG 58.966 60.000 0.00 0.00 0.00 4.35
3422 3787 1.415200 GGGAGAGGATGTAGGGTGAC 58.585 60.000 0.00 0.00 0.00 3.67
3423 3788 0.264955 GGGGAGAGGATGTAGGGTGA 59.735 60.000 0.00 0.00 0.00 4.02
3424 3789 0.764752 GGGGGAGAGGATGTAGGGTG 60.765 65.000 0.00 0.00 0.00 4.61
3425 3790 1.236026 TGGGGGAGAGGATGTAGGGT 61.236 60.000 0.00 0.00 0.00 4.34
3426 3791 0.764752 GTGGGGGAGAGGATGTAGGG 60.765 65.000 0.00 0.00 0.00 3.53
3427 3792 0.266152 AGTGGGGGAGAGGATGTAGG 59.734 60.000 0.00 0.00 0.00 3.18
3428 3793 1.710816 GAGTGGGGGAGAGGATGTAG 58.289 60.000 0.00 0.00 0.00 2.74
3429 3794 0.106167 CGAGTGGGGGAGAGGATGTA 60.106 60.000 0.00 0.00 0.00 2.29
3430 3795 1.381872 CGAGTGGGGGAGAGGATGT 60.382 63.158 0.00 0.00 0.00 3.06
3431 3796 2.801631 GCGAGTGGGGGAGAGGATG 61.802 68.421 0.00 0.00 0.00 3.51
3432 3797 2.444895 GCGAGTGGGGGAGAGGAT 60.445 66.667 0.00 0.00 0.00 3.24
3433 3798 3.992641 TGCGAGTGGGGGAGAGGA 61.993 66.667 0.00 0.00 0.00 3.71
3434 3799 3.775654 GTGCGAGTGGGGGAGAGG 61.776 72.222 0.00 0.00 0.00 3.69
3435 3800 4.135153 CGTGCGAGTGGGGGAGAG 62.135 72.222 0.00 0.00 0.00 3.20
3440 3805 3.835790 TTTTCCCGTGCGAGTGGGG 62.836 63.158 6.46 1.17 46.03 4.96
3442 3807 3.739167 TTTTTCCCGTGCGAGTGG 58.261 55.556 0.00 0.00 0.00 4.00
3456 3821 3.838317 GGGTCTATGCTTTTCCCCTTTTT 59.162 43.478 0.00 0.00 32.66 1.94
3457 3822 3.441101 GGGTCTATGCTTTTCCCCTTTT 58.559 45.455 0.00 0.00 32.66 2.27
3458 3823 2.620627 CGGGTCTATGCTTTTCCCCTTT 60.621 50.000 0.00 0.00 35.11 3.11
3459 3824 1.064685 CGGGTCTATGCTTTTCCCCTT 60.065 52.381 0.00 0.00 35.11 3.95
3460 3825 0.546598 CGGGTCTATGCTTTTCCCCT 59.453 55.000 0.00 0.00 35.11 4.79
3461 3826 1.101635 GCGGGTCTATGCTTTTCCCC 61.102 60.000 0.00 0.00 35.11 4.81
3462 3827 1.101635 GGCGGGTCTATGCTTTTCCC 61.102 60.000 0.00 0.00 35.22 3.97
3463 3828 1.436983 CGGCGGGTCTATGCTTTTCC 61.437 60.000 0.00 0.00 0.00 3.13
3464 3829 2.014594 CGGCGGGTCTATGCTTTTC 58.985 57.895 0.00 0.00 0.00 2.29
3465 3830 2.112815 GCGGCGGGTCTATGCTTTT 61.113 57.895 9.78 0.00 0.00 2.27
3466 3831 2.513897 GCGGCGGGTCTATGCTTT 60.514 61.111 9.78 0.00 0.00 3.51
3467 3832 3.447025 GAGCGGCGGGTCTATGCTT 62.447 63.158 15.43 0.00 37.68 3.91
3468 3833 3.917760 GAGCGGCGGGTCTATGCT 61.918 66.667 15.43 0.00 37.68 3.79
3469 3834 4.971125 GGAGCGGCGGGTCTATGC 62.971 72.222 20.84 2.99 40.51 3.14
3470 3835 3.506059 CTGGAGCGGCGGGTCTATG 62.506 68.421 20.84 9.22 40.51 2.23
3471 3836 3.227276 CTGGAGCGGCGGGTCTAT 61.227 66.667 20.84 0.00 40.51 1.98
3482 3847 2.026879 GATCCGACGAGCTGGAGC 59.973 66.667 1.44 0.00 37.76 4.70
3483 3848 2.725008 GGATCCGACGAGCTGGAG 59.275 66.667 1.44 0.00 37.76 3.86
3484 3849 2.833582 GGGATCCGACGAGCTGGA 60.834 66.667 5.45 0.00 38.95 3.86
3495 3860 2.511600 CAGCGGTGTTCGGGATCC 60.512 66.667 6.41 1.92 39.69 3.36
3496 3861 3.195698 GCAGCGGTGTTCGGGATC 61.196 66.667 17.07 0.00 39.69 3.36
3497 3862 4.778143 GGCAGCGGTGTTCGGGAT 62.778 66.667 17.07 0.00 39.69 3.85
3513 3878 3.866582 GGAGACTGATGGCGGGGG 61.867 72.222 0.00 0.00 0.00 5.40
3525 3890 0.741221 GGTCAAGCGACATGGGAGAC 60.741 60.000 0.00 0.00 44.54 3.36
3532 3897 2.047274 CACCGGGTCAAGCGACAT 60.047 61.111 6.32 0.00 44.54 3.06
3538 3903 2.551912 GGTGTTGCACCGGGTCAAG 61.552 63.158 6.32 0.00 44.95 3.02
3547 3913 4.101790 CGATGGCGGGTGTTGCAC 62.102 66.667 0.00 0.00 0.00 4.57
3548 3914 4.321966 TCGATGGCGGGTGTTGCA 62.322 61.111 0.00 0.00 38.28 4.08
3558 3924 4.570663 CTCGGACCCGTCGATGGC 62.571 72.222 18.81 5.42 40.74 4.40
3595 3961 1.039233 CACTGTCAATGGATGGGGCC 61.039 60.000 0.00 0.00 0.00 5.80
3628 3994 1.990160 AAGGTCGGGAGTTGTTGGCA 61.990 55.000 0.00 0.00 0.00 4.92
3635 4001 1.053424 TTGCTACAAGGTCGGGAGTT 58.947 50.000 0.00 0.00 0.00 3.01
3636 4002 1.053424 TTTGCTACAAGGTCGGGAGT 58.947 50.000 0.00 0.00 0.00 3.85
3637 4003 2.178912 TTTTGCTACAAGGTCGGGAG 57.821 50.000 0.00 0.00 0.00 4.30
3662 4028 7.478322 GGCAATCGTAGAAGTTATATCCGATA 58.522 38.462 4.17 0.00 43.58 2.92
3670 4036 3.454375 CACCGGCAATCGTAGAAGTTAT 58.546 45.455 0.00 0.00 43.58 1.89
3740 4107 8.496707 AACAGAAGTCAATTCTTGCAATTTTT 57.503 26.923 0.00 0.00 46.49 1.94
3751 4118 5.460091 GGTTTGCTGAAACAGAAGTCAATTC 59.540 40.000 2.81 0.00 42.95 2.17
3757 4124 4.799564 TTTGGTTTGCTGAAACAGAAGT 57.200 36.364 2.81 0.00 42.95 3.01
3758 4125 5.639082 AGTTTTTGGTTTGCTGAAACAGAAG 59.361 36.000 2.81 0.00 42.95 2.85
3785 4152 4.959839 ACCAGGTTCATTTTTGTTACCACT 59.040 37.500 0.00 0.00 0.00 4.00
3792 4159 3.181466 GCTGGAACCAGGTTCATTTTTGT 60.181 43.478 29.89 0.00 43.54 2.83
3803 4171 1.691196 TCTGTTTTGCTGGAACCAGG 58.309 50.000 20.38 4.26 43.77 4.45
3849 4217 5.720371 TGGAAGTTGGAACCACAATAATG 57.280 39.130 0.00 0.00 32.24 1.90
3850 4218 5.600484 TGTTGGAAGTTGGAACCACAATAAT 59.400 36.000 0.00 0.00 33.20 1.28
3854 4222 2.808919 TGTTGGAAGTTGGAACCACAA 58.191 42.857 0.00 0.00 33.20 3.33
3855 4223 2.516227 TGTTGGAAGTTGGAACCACA 57.484 45.000 0.00 0.00 33.20 4.17
3860 4228 5.454471 CCATTGGATTTGTTGGAAGTTGGAA 60.454 40.000 0.00 0.00 0.00 3.53
3866 4234 6.095432 TGTTACCATTGGATTTGTTGGAAG 57.905 37.500 10.37 0.00 0.00 3.46
3877 4245 8.640651 CCATCATCATTATTTGTTACCATTGGA 58.359 33.333 10.37 0.00 0.00 3.53
3887 4264 5.657745 TGCTGGAACCATCATCATTATTTGT 59.342 36.000 0.00 0.00 0.00 2.83
3938 4315 5.165961 TGGAACCAACAACCAAATTTTCA 57.834 34.783 0.00 0.00 0.00 2.69
3946 4323 2.432510 GGTTTGATGGAACCAACAACCA 59.567 45.455 14.37 0.00 46.66 3.67
3972 4349 1.000052 TCAATTGTGCTACGACCGACA 60.000 47.619 5.13 0.00 0.00 4.35
4017 4394 0.570734 CGATAAGTGCTACAACCGCG 59.429 55.000 0.00 0.00 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.