Multiple sequence alignment - TraesCS7B01G170400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G170400 chr7B 100.000 2426 0 0 1 2426 242666864 242664439 0.000000e+00 4481.0
1 TraesCS7B01G170400 chr7B 89.412 85 9 0 2342 2426 605079169 605079253 9.170000e-20 108.0
2 TraesCS7B01G170400 chr7D 93.868 1745 75 17 452 2179 261879001 261880730 0.000000e+00 2601.0
3 TraesCS7B01G170400 chr7D 87.435 191 6 5 232 414 261878821 261879001 1.140000e-48 204.0
4 TraesCS7B01G170400 chr7D 87.356 87 9 2 2334 2420 250623853 250623937 5.520000e-17 99.0
5 TraesCS7B01G170400 chr7A 94.264 1046 30 12 837 1877 284786343 284787363 0.000000e+00 1572.0
6 TraesCS7B01G170400 chr7A 92.621 515 21 8 347 845 284782942 284783455 0.000000e+00 725.0
7 TraesCS7B01G170400 chr7A 92.045 264 16 4 1935 2194 285001421 285001683 1.370000e-97 366.0
8 TraesCS7B01G170400 chr7A 92.632 190 12 1 2237 2426 285001687 285001874 3.070000e-69 272.0
9 TraesCS7B01G170400 chr7A 77.103 214 42 5 1124 1332 709028776 709028987 1.520000e-22 117.0
10 TraesCS7B01G170400 chr7A 91.111 45 4 0 2193 2237 705448836 705448792 7.240000e-06 62.1
11 TraesCS7B01G170400 chr1B 98.857 175 2 0 1 175 11863427 11863253 1.810000e-81 313.0
12 TraesCS7B01G170400 chr1B 91.398 93 8 0 2334 2426 337939108 337939200 7.040000e-26 128.0
13 TraesCS7B01G170400 chr2B 92.135 178 13 1 1 177 614307073 614306896 1.440000e-62 250.0
14 TraesCS7B01G170400 chr2B 93.023 43 3 0 2192 2234 798832831 798832873 2.010000e-06 63.9
15 TraesCS7B01G170400 chr2B 94.872 39 2 0 180 218 506206641 506206603 7.240000e-06 62.1
16 TraesCS7B01G170400 chr4D 92.222 90 7 0 2337 2426 85012639 85012728 7.040000e-26 128.0
17 TraesCS7B01G170400 chr3B 89.011 91 8 2 2337 2426 379575802 379575713 7.090000e-21 111.0
18 TraesCS7B01G170400 chr4A 89.412 85 9 0 2342 2426 716546530 716546446 9.170000e-20 108.0
19 TraesCS7B01G170400 chr4A 91.304 46 4 0 2192 2237 672281334 672281289 2.010000e-06 63.9
20 TraesCS7B01G170400 chr6B 93.333 45 3 0 2193 2237 259879733 259879689 1.560000e-07 67.6
21 TraesCS7B01G170400 chr1A 91.667 48 4 0 2190 2237 209354690 209354643 1.560000e-07 67.6
22 TraesCS7B01G170400 chr5A 90.000 50 5 0 2187 2236 55409866 55409915 5.600000e-07 65.8
23 TraesCS7B01G170400 chr3D 91.304 46 4 0 2192 2237 465530651 465530606 2.010000e-06 63.9
24 TraesCS7B01G170400 chr5D 91.111 45 4 0 2193 2237 496584179 496584223 7.240000e-06 62.1
25 TraesCS7B01G170400 chr2A 91.111 45 4 0 2190 2234 499175636 499175680 7.240000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G170400 chr7B 242664439 242666864 2425 True 4481.0 4481 100.0000 1 2426 1 chr7B.!!$R1 2425
1 TraesCS7B01G170400 chr7D 261878821 261880730 1909 False 1402.5 2601 90.6515 232 2179 2 chr7D.!!$F2 1947
2 TraesCS7B01G170400 chr7A 284782942 284787363 4421 False 1148.5 1572 93.4425 347 1877 2 chr7A.!!$F2 1530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.107993 CCAAGAGATCAGAAGGCGCA 60.108 55.0 10.83 0.0 0.0 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 4716 0.036199 CACCCACCCAATTGGCAATG 60.036 55.0 19.75 15.39 37.83 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.912897 ACAGGAACCCTACCCCTC 57.087 61.111 0.00 0.00 29.64 4.30
18 19 2.194154 ACAGGAACCCTACCCCTCT 58.806 57.895 0.00 0.00 29.64 3.69
19 20 0.252742 ACAGGAACCCTACCCCTCTG 60.253 60.000 0.00 0.00 29.64 3.35
20 21 1.307084 AGGAACCCTACCCCTCTGC 60.307 63.158 0.00 0.00 28.47 4.26
21 22 2.376165 GGAACCCTACCCCTCTGCC 61.376 68.421 0.00 0.00 0.00 4.85
22 23 1.307084 GAACCCTACCCCTCTGCCT 60.307 63.158 0.00 0.00 0.00 4.75
23 24 1.307084 AACCCTACCCCTCTGCCTC 60.307 63.158 0.00 0.00 0.00 4.70
24 25 2.840102 CCCTACCCCTCTGCCTCG 60.840 72.222 0.00 0.00 0.00 4.63
25 26 3.541713 CCTACCCCTCTGCCTCGC 61.542 72.222 0.00 0.00 0.00 5.03
26 27 3.541713 CTACCCCTCTGCCTCGCC 61.542 72.222 0.00 0.00 0.00 5.54
41 42 4.329545 GCCCCGTCACAGCCAAGA 62.330 66.667 0.00 0.00 0.00 3.02
42 43 2.046892 CCCCGTCACAGCCAAGAG 60.047 66.667 0.00 0.00 0.00 2.85
43 44 2.583441 CCCCGTCACAGCCAAGAGA 61.583 63.158 0.00 0.00 0.00 3.10
44 45 1.599047 CCCGTCACAGCCAAGAGAT 59.401 57.895 0.00 0.00 0.00 2.75
45 46 0.460987 CCCGTCACAGCCAAGAGATC 60.461 60.000 0.00 0.00 0.00 2.75
46 47 0.247460 CCGTCACAGCCAAGAGATCA 59.753 55.000 0.00 0.00 0.00 2.92
47 48 1.638133 CGTCACAGCCAAGAGATCAG 58.362 55.000 0.00 0.00 0.00 2.90
48 49 1.203287 CGTCACAGCCAAGAGATCAGA 59.797 52.381 0.00 0.00 0.00 3.27
49 50 2.353109 CGTCACAGCCAAGAGATCAGAA 60.353 50.000 0.00 0.00 0.00 3.02
50 51 3.260740 GTCACAGCCAAGAGATCAGAAG 58.739 50.000 0.00 0.00 0.00 2.85
51 52 2.235650 TCACAGCCAAGAGATCAGAAGG 59.764 50.000 0.00 0.00 0.00 3.46
52 53 1.065564 ACAGCCAAGAGATCAGAAGGC 60.066 52.381 10.25 10.25 42.31 4.35
53 54 0.177604 AGCCAAGAGATCAGAAGGCG 59.822 55.000 11.85 0.00 46.34 5.52
54 55 1.435408 GCCAAGAGATCAGAAGGCGC 61.435 60.000 0.00 0.00 31.88 6.53
55 56 0.107993 CCAAGAGATCAGAAGGCGCA 60.108 55.000 10.83 0.00 0.00 6.09
56 57 1.288350 CAAGAGATCAGAAGGCGCAG 58.712 55.000 10.83 0.00 0.00 5.18
95 96 2.512692 TGGGACAAGTGATGGATTGG 57.487 50.000 0.00 0.00 31.92 3.16
96 97 1.710244 TGGGACAAGTGATGGATTGGT 59.290 47.619 0.00 0.00 31.92 3.67
97 98 2.916269 TGGGACAAGTGATGGATTGGTA 59.084 45.455 0.00 0.00 31.92 3.25
98 99 3.332187 TGGGACAAGTGATGGATTGGTAA 59.668 43.478 0.00 0.00 31.92 2.85
99 100 4.017591 TGGGACAAGTGATGGATTGGTAAT 60.018 41.667 0.00 0.00 31.92 1.89
100 101 4.580580 GGGACAAGTGATGGATTGGTAATC 59.419 45.833 0.00 0.00 37.17 1.75
101 102 5.192927 GGACAAGTGATGGATTGGTAATCA 58.807 41.667 4.19 0.00 39.71 2.57
102 103 5.297776 GGACAAGTGATGGATTGGTAATCAG 59.702 44.000 4.19 0.00 39.71 2.90
103 104 6.065976 ACAAGTGATGGATTGGTAATCAGA 57.934 37.500 4.19 0.00 39.71 3.27
104 105 6.118170 ACAAGTGATGGATTGGTAATCAGAG 58.882 40.000 4.19 0.00 39.71 3.35
105 106 5.301835 AGTGATGGATTGGTAATCAGAGG 57.698 43.478 4.19 0.00 39.71 3.69
106 107 4.971282 AGTGATGGATTGGTAATCAGAGGA 59.029 41.667 4.19 0.00 39.71 3.71
107 108 5.610132 AGTGATGGATTGGTAATCAGAGGAT 59.390 40.000 4.19 0.00 39.71 3.24
108 109 5.704515 GTGATGGATTGGTAATCAGAGGATG 59.295 44.000 4.19 0.00 39.71 3.51
109 110 4.712051 TGGATTGGTAATCAGAGGATGG 57.288 45.455 4.19 0.00 39.71 3.51
110 111 3.395607 TGGATTGGTAATCAGAGGATGGG 59.604 47.826 4.19 0.00 39.71 4.00
111 112 3.245052 GGATTGGTAATCAGAGGATGGGG 60.245 52.174 4.19 0.00 39.71 4.96
112 113 2.887454 TGGTAATCAGAGGATGGGGA 57.113 50.000 0.00 0.00 32.92 4.81
113 114 2.408565 TGGTAATCAGAGGATGGGGAC 58.591 52.381 0.00 0.00 32.92 4.46
114 115 1.344763 GGTAATCAGAGGATGGGGACG 59.655 57.143 0.00 0.00 32.92 4.79
115 116 2.317040 GTAATCAGAGGATGGGGACGA 58.683 52.381 0.00 0.00 32.92 4.20
116 117 2.109229 AATCAGAGGATGGGGACGAT 57.891 50.000 0.00 0.00 32.92 3.73
117 118 1.346062 ATCAGAGGATGGGGACGATG 58.654 55.000 0.00 0.00 30.86 3.84
118 119 0.760567 TCAGAGGATGGGGACGATGG 60.761 60.000 0.00 0.00 0.00 3.51
119 120 1.050988 CAGAGGATGGGGACGATGGT 61.051 60.000 0.00 0.00 0.00 3.55
120 121 0.760945 AGAGGATGGGGACGATGGTC 60.761 60.000 0.00 0.00 42.66 4.02
121 122 0.760945 GAGGATGGGGACGATGGTCT 60.761 60.000 7.84 0.00 42.97 3.85
122 123 0.760945 AGGATGGGGACGATGGTCTC 60.761 60.000 7.84 3.19 43.29 3.36
136 137 4.345962 TCTCGACGGCGGCGAAAA 62.346 61.111 38.41 26.26 37.32 2.29
137 138 3.408020 CTCGACGGCGGCGAAAAA 61.408 61.111 38.41 17.29 37.32 1.94
138 139 2.736682 CTCGACGGCGGCGAAAAAT 61.737 57.895 38.41 15.77 37.32 1.82
139 140 2.276430 CGACGGCGGCGAAAAATC 60.276 61.111 38.93 22.66 0.00 2.17
140 141 2.276430 GACGGCGGCGAAAAATCG 60.276 61.111 38.93 6.53 0.00 3.34
148 149 3.514362 CGAAAAATCGCCCCCGGG 61.514 66.667 15.80 15.80 38.57 5.73
149 150 2.044749 GAAAAATCGCCCCCGGGA 60.045 61.111 26.32 0.42 37.50 5.14
150 151 2.044352 AAAAATCGCCCCCGGGAG 60.044 61.111 26.32 11.12 37.50 4.30
165 166 3.257469 CGGGAGGAGTAAAACCCTAAC 57.743 52.381 0.00 0.00 40.12 2.34
166 167 2.417787 CGGGAGGAGTAAAACCCTAACG 60.418 54.545 0.00 0.00 40.12 3.18
167 168 2.568956 GGGAGGAGTAAAACCCTAACGT 59.431 50.000 0.00 0.00 39.28 3.99
168 169 3.593096 GGAGGAGTAAAACCCTAACGTG 58.407 50.000 0.00 0.00 31.84 4.49
169 170 3.259123 GGAGGAGTAAAACCCTAACGTGA 59.741 47.826 0.00 0.00 31.84 4.35
170 171 4.492611 GAGGAGTAAAACCCTAACGTGAG 58.507 47.826 0.00 0.00 31.84 3.51
171 172 3.260128 AGGAGTAAAACCCTAACGTGAGG 59.740 47.826 12.63 12.63 36.23 3.86
182 183 4.571919 CCTAACGTGAGGGAAAACATACA 58.428 43.478 11.67 0.00 32.39 2.29
183 184 5.183228 CCTAACGTGAGGGAAAACATACAT 58.817 41.667 11.67 0.00 32.39 2.29
184 185 5.293569 CCTAACGTGAGGGAAAACATACATC 59.706 44.000 11.67 0.00 32.39 3.06
185 186 4.553330 ACGTGAGGGAAAACATACATCT 57.447 40.909 0.00 0.00 0.00 2.90
186 187 4.906618 ACGTGAGGGAAAACATACATCTT 58.093 39.130 0.00 0.00 0.00 2.40
187 188 4.935808 ACGTGAGGGAAAACATACATCTTC 59.064 41.667 0.00 0.00 0.00 2.87
188 189 5.178797 CGTGAGGGAAAACATACATCTTCT 58.821 41.667 0.00 0.00 0.00 2.85
189 190 6.070995 ACGTGAGGGAAAACATACATCTTCTA 60.071 38.462 0.00 0.00 0.00 2.10
190 191 6.986817 CGTGAGGGAAAACATACATCTTCTAT 59.013 38.462 0.00 0.00 0.00 1.98
191 192 8.141909 CGTGAGGGAAAACATACATCTTCTATA 58.858 37.037 0.00 0.00 0.00 1.31
192 193 9.832445 GTGAGGGAAAACATACATCTTCTATAA 57.168 33.333 0.00 0.00 0.00 0.98
218 219 9.289782 AGTAGAGATACAATATTTTTCATGGGC 57.710 33.333 0.00 0.00 0.00 5.36
219 220 9.289782 GTAGAGATACAATATTTTTCATGGGCT 57.710 33.333 0.00 0.00 0.00 5.19
220 221 8.401490 AGAGATACAATATTTTTCATGGGCTC 57.599 34.615 0.00 0.00 0.00 4.70
221 222 7.449704 AGAGATACAATATTTTTCATGGGCTCC 59.550 37.037 0.00 0.00 0.00 4.70
222 223 7.300658 AGATACAATATTTTTCATGGGCTCCT 58.699 34.615 0.00 0.00 0.00 3.69
223 224 5.859205 ACAATATTTTTCATGGGCTCCTC 57.141 39.130 0.00 0.00 0.00 3.71
224 225 5.271598 ACAATATTTTTCATGGGCTCCTCA 58.728 37.500 0.00 0.00 0.00 3.86
225 226 5.721000 ACAATATTTTTCATGGGCTCCTCAA 59.279 36.000 0.00 0.00 0.00 3.02
226 227 6.384886 ACAATATTTTTCATGGGCTCCTCAAT 59.615 34.615 0.00 0.00 0.00 2.57
227 228 6.661304 ATATTTTTCATGGGCTCCTCAATC 57.339 37.500 0.00 0.00 0.00 2.67
228 229 2.442236 TTTCATGGGCTCCTCAATCC 57.558 50.000 0.00 0.00 0.00 3.01
229 230 1.297968 TTCATGGGCTCCTCAATCCA 58.702 50.000 0.00 0.00 0.00 3.41
230 231 1.297968 TCATGGGCTCCTCAATCCAA 58.702 50.000 0.00 0.00 32.56 3.53
231 232 1.854939 TCATGGGCTCCTCAATCCAAT 59.145 47.619 0.00 0.00 32.56 3.16
232 233 2.158564 TCATGGGCTCCTCAATCCAATC 60.159 50.000 0.00 0.00 32.56 2.67
233 234 0.552848 TGGGCTCCTCAATCCAATCC 59.447 55.000 0.00 0.00 0.00 3.01
282 291 3.947196 CAGGTGTATGCAGGCTATCAAAA 59.053 43.478 0.00 0.00 0.00 2.44
285 294 2.942376 TGTATGCAGGCTATCAAAACCG 59.058 45.455 0.00 0.00 0.00 4.44
286 295 1.392589 ATGCAGGCTATCAAAACCGG 58.607 50.000 0.00 0.00 0.00 5.28
289 298 1.076995 AGGCTATCAAAACCGGCCC 60.077 57.895 0.00 0.00 43.36 5.80
290 299 1.379309 GGCTATCAAAACCGGCCCA 60.379 57.895 0.00 0.00 37.12 5.36
291 300 0.755327 GGCTATCAAAACCGGCCCAT 60.755 55.000 0.00 0.00 37.12 4.00
292 301 1.477923 GGCTATCAAAACCGGCCCATA 60.478 52.381 0.00 0.00 37.12 2.74
293 302 2.514803 GCTATCAAAACCGGCCCATAT 58.485 47.619 0.00 0.00 0.00 1.78
294 303 3.560453 GGCTATCAAAACCGGCCCATATA 60.560 47.826 0.00 0.00 37.12 0.86
321 330 2.520069 ACATAGGAGACTCGCTATGGG 58.480 52.381 27.19 14.90 43.67 4.00
322 331 1.821753 CATAGGAGACTCGCTATGGGG 59.178 57.143 21.60 7.29 43.67 4.96
341 350 2.293955 GGGACGCTCTAGAATAGGTGAC 59.706 54.545 0.00 0.00 39.78 3.67
343 352 3.633065 GGACGCTCTAGAATAGGTGACTT 59.367 47.826 0.00 0.00 43.67 3.01
344 353 4.098196 GGACGCTCTAGAATAGGTGACTTT 59.902 45.833 0.00 0.00 43.67 2.66
345 354 5.394333 GGACGCTCTAGAATAGGTGACTTTT 60.394 44.000 0.00 0.00 43.67 2.27
454 463 3.517100 AGCTTGCTTCTAGATGTCCTCAA 59.483 43.478 7.41 2.85 0.00 3.02
459 468 3.625313 GCTTCTAGATGTCCTCAAAAGGC 59.375 47.826 7.41 0.00 43.02 4.35
460 469 4.836825 CTTCTAGATGTCCTCAAAAGGCA 58.163 43.478 0.00 0.00 43.02 4.75
473 482 6.986231 TCCTCAAAAGGCAAAAAGAAAATCTC 59.014 34.615 0.00 0.00 43.02 2.75
500 509 0.467290 GATGGAAATTAGGGCCGCCA 60.467 55.000 12.58 0.59 0.00 5.69
538 547 3.755628 TGTGCTCTCCGCCGTACC 61.756 66.667 0.00 0.00 38.05 3.34
665 676 9.696917 CCAAAACAGCCAGGATATTATTTTATC 57.303 33.333 0.00 0.00 0.00 1.75
666 677 9.398170 CAAAACAGCCAGGATATTATTTTATCG 57.602 33.333 0.00 0.00 30.69 2.92
667 678 6.743575 ACAGCCAGGATATTATTTTATCGC 57.256 37.500 0.00 0.00 30.69 4.58
668 679 5.351465 ACAGCCAGGATATTATTTTATCGCG 59.649 40.000 0.00 0.00 30.69 5.87
669 680 5.580691 CAGCCAGGATATTATTTTATCGCGA 59.419 40.000 13.09 13.09 30.69 5.87
670 681 5.812642 AGCCAGGATATTATTTTATCGCGAG 59.187 40.000 16.66 0.00 30.69 5.03
799 825 3.790437 CGCCCCAGCCAGATCACT 61.790 66.667 0.00 0.00 34.57 3.41
833 859 2.681778 CTCACAGCCCCGACCTCT 60.682 66.667 0.00 0.00 0.00 3.69
858 3780 5.689514 CACAAAAACAAATATCAACCAGCGA 59.310 36.000 0.00 0.00 0.00 4.93
996 3923 3.323691 TCTTCTCAGATTTGTGGGTTCGA 59.676 43.478 0.00 0.00 0.00 3.71
997 3924 3.040147 TCTCAGATTTGTGGGTTCGAC 57.960 47.619 0.00 0.00 0.00 4.20
1272 4199 1.725665 CGACGACTTCATCCGCCTA 59.274 57.895 0.00 0.00 0.00 3.93
1431 4358 4.473520 CAGTGCTGGTAGGCCCGG 62.474 72.222 0.00 0.00 43.19 5.73
1483 4410 1.048601 TAGCCACCACTATAGCAGCC 58.951 55.000 0.00 0.00 0.00 4.85
1583 4510 3.933861 ACATGTAAATCCCCACCTCTC 57.066 47.619 0.00 0.00 0.00 3.20
1584 4511 2.509964 ACATGTAAATCCCCACCTCTCC 59.490 50.000 0.00 0.00 0.00 3.71
1585 4512 2.661176 TGTAAATCCCCACCTCTCCT 57.339 50.000 0.00 0.00 0.00 3.69
1586 4513 2.929301 TGTAAATCCCCACCTCTCCTT 58.071 47.619 0.00 0.00 0.00 3.36
1587 4514 2.576191 TGTAAATCCCCACCTCTCCTTG 59.424 50.000 0.00 0.00 0.00 3.61
1588 4515 1.760405 AAATCCCCACCTCTCCTTGT 58.240 50.000 0.00 0.00 0.00 3.16
1589 4516 1.290134 AATCCCCACCTCTCCTTGTC 58.710 55.000 0.00 0.00 0.00 3.18
1598 4525 3.103742 ACCTCTCCTTGTCCTTGATCTC 58.896 50.000 0.00 0.00 0.00 2.75
1784 4716 1.388547 TTATTCGATGCCAGCCAACC 58.611 50.000 0.00 0.00 0.00 3.77
1847 4779 2.010145 AGGTCAAACGTGATCATCGG 57.990 50.000 17.75 6.31 37.34 4.18
1877 4809 0.679002 CTCCGTCGGTCCACCTCTTA 60.679 60.000 11.88 0.00 0.00 2.10
1884 4816 1.809684 GGTCCACCTCTTAGCACAAC 58.190 55.000 0.00 0.00 0.00 3.32
1898 4830 9.561069 CTCTTAGCACAACCTTAAATATACCAT 57.439 33.333 0.00 0.00 0.00 3.55
1952 4884 0.308376 GCCTCGTCGATCTGGTCTAC 59.692 60.000 0.00 0.00 0.00 2.59
2002 4935 5.463499 AATTTCGCGGCAAATAAAATTCC 57.537 34.783 6.13 0.00 0.00 3.01
2011 4944 3.181521 GCAAATAAAATTCCTGCGGCAAC 60.182 43.478 3.44 0.00 0.00 4.17
2051 4991 6.701937 TCGTGACATAATTAAAGTGCGATTC 58.298 36.000 10.64 0.00 0.00 2.52
2068 5008 9.088512 AGTGCGATTCTTAATACTACTCAAAAG 57.911 33.333 0.00 0.00 0.00 2.27
2069 5009 8.870879 GTGCGATTCTTAATACTACTCAAAAGT 58.129 33.333 0.00 0.00 39.66 2.66
2139 5079 6.424207 GGACCCACGATCTGTTAATTTCTATC 59.576 42.308 0.00 0.00 0.00 2.08
2146 5086 9.906660 ACGATCTGTTAATTTCTATCTCTCATC 57.093 33.333 0.00 0.00 0.00 2.92
2174 5114 5.521735 GCAACATCTCGTCATGAATCTTAGT 59.478 40.000 0.00 0.00 0.00 2.24
2179 5119 8.251026 ACATCTCGTCATGAATCTTAGTTAACA 58.749 33.333 8.61 0.00 0.00 2.41
2180 5120 9.087424 CATCTCGTCATGAATCTTAGTTAACAA 57.913 33.333 8.61 0.00 0.00 2.83
2181 5121 8.689251 TCTCGTCATGAATCTTAGTTAACAAG 57.311 34.615 8.61 9.46 0.00 3.16
2182 5122 7.275779 TCTCGTCATGAATCTTAGTTAACAAGC 59.724 37.037 8.61 0.00 0.00 4.01
2183 5123 6.034577 TCGTCATGAATCTTAGTTAACAAGCG 59.965 38.462 8.61 6.23 0.00 4.68
2184 5124 6.034577 CGTCATGAATCTTAGTTAACAAGCGA 59.965 38.462 8.61 0.00 0.00 4.93
2185 5125 7.411480 CGTCATGAATCTTAGTTAACAAGCGAA 60.411 37.037 8.61 0.00 0.00 4.70
2186 5126 8.227791 GTCATGAATCTTAGTTAACAAGCGAAA 58.772 33.333 8.61 0.00 0.00 3.46
2187 5127 8.443160 TCATGAATCTTAGTTAACAAGCGAAAG 58.557 33.333 8.61 2.17 0.00 2.62
2188 5128 7.956420 TGAATCTTAGTTAACAAGCGAAAGA 57.044 32.000 8.61 7.08 0.00 2.52
2189 5129 8.373048 TGAATCTTAGTTAACAAGCGAAAGAA 57.627 30.769 8.61 0.00 0.00 2.52
2190 5130 8.999431 TGAATCTTAGTTAACAAGCGAAAGAAT 58.001 29.630 8.61 0.80 0.00 2.40
2191 5131 9.267096 GAATCTTAGTTAACAAGCGAAAGAATG 57.733 33.333 8.61 0.00 0.00 2.67
2192 5132 7.724305 TCTTAGTTAACAAGCGAAAGAATGT 57.276 32.000 8.61 0.00 33.69 2.71
2193 5133 8.821147 TCTTAGTTAACAAGCGAAAGAATGTA 57.179 30.769 8.61 0.00 32.31 2.29
2194 5134 8.706035 TCTTAGTTAACAAGCGAAAGAATGTAC 58.294 33.333 8.61 0.00 32.31 2.90
2195 5135 8.597662 TTAGTTAACAAGCGAAAGAATGTACT 57.402 30.769 8.61 0.00 32.31 2.73
2196 5136 7.118422 AGTTAACAAGCGAAAGAATGTACTC 57.882 36.000 8.61 0.00 32.31 2.59
2197 5137 6.147328 AGTTAACAAGCGAAAGAATGTACTCC 59.853 38.462 8.61 0.00 32.31 3.85
2198 5138 3.335579 ACAAGCGAAAGAATGTACTCCC 58.664 45.455 0.00 0.00 31.09 4.30
2199 5139 3.008049 ACAAGCGAAAGAATGTACTCCCT 59.992 43.478 0.00 0.00 31.09 4.20
2200 5140 4.222145 ACAAGCGAAAGAATGTACTCCCTA 59.778 41.667 0.00 0.00 31.09 3.53
2201 5141 4.388378 AGCGAAAGAATGTACTCCCTAC 57.612 45.455 0.00 0.00 0.00 3.18
2202 5142 3.767673 AGCGAAAGAATGTACTCCCTACA 59.232 43.478 0.00 0.00 39.78 2.74
2203 5143 4.406003 AGCGAAAGAATGTACTCCCTACAT 59.594 41.667 0.00 0.00 46.46 2.29
2214 5154 7.504926 TGTACTCCCTACATTTGGATTTACT 57.495 36.000 0.00 0.00 29.73 2.24
2215 5155 7.562135 TGTACTCCCTACATTTGGATTTACTC 58.438 38.462 0.00 0.00 29.73 2.59
2216 5156 5.671493 ACTCCCTACATTTGGATTTACTCG 58.329 41.667 0.00 0.00 0.00 4.18
2217 5157 5.189145 ACTCCCTACATTTGGATTTACTCGT 59.811 40.000 0.00 0.00 0.00 4.18
2218 5158 5.667466 TCCCTACATTTGGATTTACTCGTC 58.333 41.667 0.00 0.00 0.00 4.20
2219 5159 4.506654 CCCTACATTTGGATTTACTCGTCG 59.493 45.833 0.00 0.00 0.00 5.12
2220 5160 5.107133 CCTACATTTGGATTTACTCGTCGT 58.893 41.667 0.00 0.00 0.00 4.34
2221 5161 4.921470 ACATTTGGATTTACTCGTCGTG 57.079 40.909 0.00 0.00 0.00 4.35
2222 5162 3.682858 ACATTTGGATTTACTCGTCGTGG 59.317 43.478 0.00 0.00 0.00 4.94
2223 5163 3.389925 TTTGGATTTACTCGTCGTGGT 57.610 42.857 0.00 0.00 0.00 4.16
2224 5164 3.389925 TTGGATTTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
2225 5165 3.389925 TGGATTTACTCGTCGTGGTTT 57.610 42.857 0.00 0.00 0.00 3.27
2226 5166 3.731089 TGGATTTACTCGTCGTGGTTTT 58.269 40.909 0.00 0.00 0.00 2.43
2227 5167 4.880759 TGGATTTACTCGTCGTGGTTTTA 58.119 39.130 0.00 0.00 0.00 1.52
2228 5168 4.925054 TGGATTTACTCGTCGTGGTTTTAG 59.075 41.667 0.00 0.00 0.00 1.85
2229 5169 4.925646 GGATTTACTCGTCGTGGTTTTAGT 59.074 41.667 0.00 0.00 0.00 2.24
2230 5170 5.406477 GGATTTACTCGTCGTGGTTTTAGTT 59.594 40.000 0.00 0.00 0.00 2.24
2231 5171 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
2232 5172 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
2233 5173 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
2234 5174 3.553105 ACTCGTCGTGGTTTTAGTTCAAC 59.447 43.478 0.00 0.00 0.00 3.18
2235 5175 3.784338 TCGTCGTGGTTTTAGTTCAACT 58.216 40.909 0.00 0.00 0.00 3.16
2236 5176 4.183101 TCGTCGTGGTTTTAGTTCAACTT 58.817 39.130 0.00 0.00 0.00 2.66
2237 5177 4.033129 TCGTCGTGGTTTTAGTTCAACTTG 59.967 41.667 0.00 0.00 0.00 3.16
2238 5178 4.033019 GTCGTGGTTTTAGTTCAACTTGC 58.967 43.478 0.00 0.00 0.00 4.01
2239 5179 3.690139 TCGTGGTTTTAGTTCAACTTGCA 59.310 39.130 0.00 0.00 0.00 4.08
2240 5180 4.336993 TCGTGGTTTTAGTTCAACTTGCAT 59.663 37.500 0.00 0.00 0.00 3.96
2241 5181 5.527951 TCGTGGTTTTAGTTCAACTTGCATA 59.472 36.000 0.00 0.00 0.00 3.14
2242 5182 5.851177 CGTGGTTTTAGTTCAACTTGCATAG 59.149 40.000 0.00 0.00 0.00 2.23
2243 5183 6.293190 CGTGGTTTTAGTTCAACTTGCATAGA 60.293 38.462 0.00 0.00 0.00 1.98
2244 5184 7.422399 GTGGTTTTAGTTCAACTTGCATAGAA 58.578 34.615 0.00 0.00 0.00 2.10
2245 5185 8.082242 GTGGTTTTAGTTCAACTTGCATAGAAT 58.918 33.333 0.00 0.00 0.00 2.40
2246 5186 8.637986 TGGTTTTAGTTCAACTTGCATAGAATT 58.362 29.630 0.00 0.00 0.00 2.17
2247 5187 9.476202 GGTTTTAGTTCAACTTGCATAGAATTT 57.524 29.630 0.00 0.00 0.00 1.82
2293 5233 4.770874 GACGCTTGCCCGGCCTAA 62.771 66.667 7.03 0.00 0.00 2.69
2294 5234 4.338710 ACGCTTGCCCGGCCTAAA 62.339 61.111 7.03 0.00 0.00 1.85
2295 5235 3.508840 CGCTTGCCCGGCCTAAAG 61.509 66.667 7.03 5.25 0.00 1.85
2296 5236 2.045340 GCTTGCCCGGCCTAAAGA 60.045 61.111 7.03 0.00 0.00 2.52
2297 5237 1.677633 GCTTGCCCGGCCTAAAGAA 60.678 57.895 7.03 0.00 0.00 2.52
2298 5238 1.037579 GCTTGCCCGGCCTAAAGAAT 61.038 55.000 7.03 0.00 0.00 2.40
2299 5239 0.740737 CTTGCCCGGCCTAAAGAATG 59.259 55.000 7.03 0.00 0.00 2.67
2300 5240 0.329931 TTGCCCGGCCTAAAGAATGA 59.670 50.000 7.03 0.00 0.00 2.57
2301 5241 0.107214 TGCCCGGCCTAAAGAATGAG 60.107 55.000 7.03 0.00 0.00 2.90
2302 5242 0.819666 GCCCGGCCTAAAGAATGAGG 60.820 60.000 0.00 0.00 35.78 3.86
2310 5250 4.092116 CCTAAAGAATGAGGCCCTTAGG 57.908 50.000 0.00 1.33 0.00 2.69
2311 5251 3.459969 CCTAAAGAATGAGGCCCTTAGGT 59.540 47.826 0.00 0.00 34.57 3.08
2312 5252 4.658901 CCTAAAGAATGAGGCCCTTAGGTA 59.341 45.833 0.00 0.00 34.57 3.08
2313 5253 5.132144 CCTAAAGAATGAGGCCCTTAGGTAA 59.868 44.000 0.00 0.00 34.57 2.85
2314 5254 4.505324 AAGAATGAGGCCCTTAGGTAAC 57.495 45.455 0.00 0.00 34.57 2.50
2315 5255 2.778270 AGAATGAGGCCCTTAGGTAACC 59.222 50.000 0.00 0.00 34.57 2.85
2316 5256 2.280308 ATGAGGCCCTTAGGTAACCA 57.720 50.000 0.00 0.00 34.57 3.67
2317 5257 2.047769 TGAGGCCCTTAGGTAACCAA 57.952 50.000 0.00 0.00 34.57 3.67
2318 5258 2.350419 TGAGGCCCTTAGGTAACCAAA 58.650 47.619 0.00 0.00 34.57 3.28
2319 5259 2.307686 TGAGGCCCTTAGGTAACCAAAG 59.692 50.000 0.00 0.00 34.57 2.77
2320 5260 2.307980 GAGGCCCTTAGGTAACCAAAGT 59.692 50.000 0.00 0.00 34.57 2.66
2321 5261 3.520721 GAGGCCCTTAGGTAACCAAAGTA 59.479 47.826 0.00 0.00 34.57 2.24
2322 5262 3.265221 AGGCCCTTAGGTAACCAAAGTAC 59.735 47.826 0.00 0.00 34.57 2.73
2323 5263 3.009363 GGCCCTTAGGTAACCAAAGTACA 59.991 47.826 0.00 0.00 34.57 2.90
2324 5264 4.324797 GGCCCTTAGGTAACCAAAGTACAT 60.325 45.833 0.00 0.00 34.57 2.29
2325 5265 4.638865 GCCCTTAGGTAACCAAAGTACATG 59.361 45.833 0.00 0.00 34.57 3.21
2326 5266 5.572066 GCCCTTAGGTAACCAAAGTACATGA 60.572 44.000 0.00 0.00 34.57 3.07
2327 5267 5.878669 CCCTTAGGTAACCAAAGTACATGAC 59.121 44.000 0.00 0.00 37.17 3.06
2328 5268 6.469410 CCTTAGGTAACCAAAGTACATGACA 58.531 40.000 0.00 0.00 37.17 3.58
2329 5269 6.938030 CCTTAGGTAACCAAAGTACATGACAA 59.062 38.462 0.00 0.00 37.17 3.18
2330 5270 7.094933 CCTTAGGTAACCAAAGTACATGACAAC 60.095 40.741 0.00 0.00 37.17 3.32
2331 5271 5.686753 AGGTAACCAAAGTACATGACAACA 58.313 37.500 0.00 0.00 37.17 3.33
2332 5272 6.123651 AGGTAACCAAAGTACATGACAACAA 58.876 36.000 0.00 0.00 37.17 2.83
2333 5273 6.775629 AGGTAACCAAAGTACATGACAACAAT 59.224 34.615 0.00 0.00 37.17 2.71
2334 5274 7.286775 AGGTAACCAAAGTACATGACAACAATT 59.713 33.333 0.00 0.00 37.17 2.32
2335 5275 7.593644 GGTAACCAAAGTACATGACAACAATTC 59.406 37.037 0.00 0.00 0.00 2.17
2336 5276 6.959639 ACCAAAGTACATGACAACAATTCT 57.040 33.333 0.00 0.00 0.00 2.40
2337 5277 7.346751 ACCAAAGTACATGACAACAATTCTT 57.653 32.000 0.00 0.00 0.00 2.52
2338 5278 7.781056 ACCAAAGTACATGACAACAATTCTTT 58.219 30.769 0.00 0.00 0.00 2.52
2339 5279 8.257306 ACCAAAGTACATGACAACAATTCTTTT 58.743 29.630 0.00 0.00 0.00 2.27
2340 5280 9.097257 CCAAAGTACATGACAACAATTCTTTTT 57.903 29.630 0.00 0.00 0.00 1.94
2341 5281 9.904647 CAAAGTACATGACAACAATTCTTTTTG 57.095 29.630 0.00 0.00 0.00 2.44
2342 5282 9.868277 AAAGTACATGACAACAATTCTTTTTGA 57.132 25.926 0.00 0.00 0.00 2.69
2343 5283 9.520204 AAGTACATGACAACAATTCTTTTTGAG 57.480 29.630 0.00 0.00 0.00 3.02
2344 5284 8.902806 AGTACATGACAACAATTCTTTTTGAGA 58.097 29.630 0.00 0.00 0.00 3.27
2345 5285 9.173939 GTACATGACAACAATTCTTTTTGAGAG 57.826 33.333 0.00 0.00 35.37 3.20
2346 5286 7.999679 ACATGACAACAATTCTTTTTGAGAGA 58.000 30.769 0.00 0.00 35.37 3.10
2347 5287 8.469200 ACATGACAACAATTCTTTTTGAGAGAA 58.531 29.630 0.00 0.00 37.52 2.87
2348 5288 9.304731 CATGACAACAATTCTTTTTGAGAGAAA 57.695 29.630 0.00 0.00 36.77 2.52
2350 5290 9.304731 TGACAACAATTCTTTTTGAGAGAAATG 57.695 29.630 0.00 0.00 39.05 2.32
2351 5291 9.305925 GACAACAATTCTTTTTGAGAGAAATGT 57.694 29.630 2.62 2.62 44.75 2.71
2352 5292 9.090692 ACAACAATTCTTTTTGAGAGAAATGTG 57.909 29.630 7.96 5.96 43.06 3.21
2353 5293 8.545420 CAACAATTCTTTTTGAGAGAAATGTGG 58.455 33.333 7.96 2.69 43.06 4.17
2354 5294 7.212274 ACAATTCTTTTTGAGAGAAATGTGGG 58.788 34.615 6.73 0.00 42.56 4.61
2355 5295 4.853924 TCTTTTTGAGAGAAATGTGGGC 57.146 40.909 0.00 0.00 0.00 5.36
2356 5296 4.473444 TCTTTTTGAGAGAAATGTGGGCT 58.527 39.130 0.00 0.00 0.00 5.19
2357 5297 4.895297 TCTTTTTGAGAGAAATGTGGGCTT 59.105 37.500 0.00 0.00 0.00 4.35
2358 5298 5.363580 TCTTTTTGAGAGAAATGTGGGCTTT 59.636 36.000 0.00 0.00 0.00 3.51
2359 5299 6.549364 TCTTTTTGAGAGAAATGTGGGCTTTA 59.451 34.615 0.00 0.00 0.00 1.85
2360 5300 6.916360 TTTTGAGAGAAATGTGGGCTTTAT 57.084 33.333 0.00 0.00 0.00 1.40
2361 5301 6.916360 TTTGAGAGAAATGTGGGCTTTATT 57.084 33.333 0.00 0.00 0.00 1.40
2362 5302 5.902613 TGAGAGAAATGTGGGCTTTATTG 57.097 39.130 0.00 0.00 0.00 1.90
2363 5303 5.569355 TGAGAGAAATGTGGGCTTTATTGA 58.431 37.500 0.00 0.00 0.00 2.57
2364 5304 6.189859 TGAGAGAAATGTGGGCTTTATTGAT 58.810 36.000 0.00 0.00 0.00 2.57
2365 5305 6.664816 TGAGAGAAATGTGGGCTTTATTGATT 59.335 34.615 0.00 0.00 0.00 2.57
2366 5306 7.833682 TGAGAGAAATGTGGGCTTTATTGATTA 59.166 33.333 0.00 0.00 0.00 1.75
2367 5307 8.000780 AGAGAAATGTGGGCTTTATTGATTAC 57.999 34.615 0.00 0.00 0.00 1.89
2368 5308 7.836183 AGAGAAATGTGGGCTTTATTGATTACT 59.164 33.333 0.00 0.00 0.00 2.24
2369 5309 8.366359 AGAAATGTGGGCTTTATTGATTACTT 57.634 30.769 0.00 0.00 0.00 2.24
2370 5310 9.474313 AGAAATGTGGGCTTTATTGATTACTTA 57.526 29.630 0.00 0.00 0.00 2.24
2371 5311 9.736023 GAAATGTGGGCTTTATTGATTACTTAG 57.264 33.333 0.00 0.00 0.00 2.18
2372 5312 9.474313 AAATGTGGGCTTTATTGATTACTTAGA 57.526 29.630 0.00 0.00 0.00 2.10
2373 5313 9.474313 AATGTGGGCTTTATTGATTACTTAGAA 57.526 29.630 0.00 0.00 0.00 2.10
2374 5314 8.276252 TGTGGGCTTTATTGATTACTTAGAAC 57.724 34.615 0.00 0.00 0.00 3.01
2375 5315 7.885922 TGTGGGCTTTATTGATTACTTAGAACA 59.114 33.333 0.00 0.00 0.00 3.18
2376 5316 8.736244 GTGGGCTTTATTGATTACTTAGAACAA 58.264 33.333 0.00 0.00 0.00 2.83
2377 5317 9.303116 TGGGCTTTATTGATTACTTAGAACAAA 57.697 29.630 0.00 0.00 0.00 2.83
2378 5318 9.788960 GGGCTTTATTGATTACTTAGAACAAAG 57.211 33.333 0.00 0.00 0.00 2.77
2395 5335 8.655651 AGAACAAAGTTAGAAAGAGTCTTCTG 57.344 34.615 5.70 0.00 37.84 3.02
2396 5336 7.713073 AGAACAAAGTTAGAAAGAGTCTTCTGG 59.287 37.037 5.70 0.00 37.84 3.86
2397 5337 7.125792 ACAAAGTTAGAAAGAGTCTTCTGGA 57.874 36.000 5.70 0.00 37.84 3.86
2398 5338 7.565680 ACAAAGTTAGAAAGAGTCTTCTGGAA 58.434 34.615 5.70 0.00 37.84 3.53
2399 5339 8.047310 ACAAAGTTAGAAAGAGTCTTCTGGAAA 58.953 33.333 5.70 0.00 37.84 3.13
2400 5340 8.338986 CAAAGTTAGAAAGAGTCTTCTGGAAAC 58.661 37.037 5.70 7.05 37.84 2.78
2401 5341 7.125792 AGTTAGAAAGAGTCTTCTGGAAACA 57.874 36.000 5.70 0.00 37.84 2.83
2402 5342 7.740805 AGTTAGAAAGAGTCTTCTGGAAACAT 58.259 34.615 5.70 0.00 37.50 2.71
2403 5343 8.214364 AGTTAGAAAGAGTCTTCTGGAAACATT 58.786 33.333 5.70 0.00 37.50 2.71
2404 5344 8.499967 GTTAGAAAGAGTCTTCTGGAAACATTC 58.500 37.037 5.70 0.00 37.50 2.67
2405 5345 6.836242 AGAAAGAGTCTTCTGGAAACATTCT 58.164 36.000 5.70 0.00 33.47 2.40
2406 5346 7.967908 AGAAAGAGTCTTCTGGAAACATTCTA 58.032 34.615 5.70 0.00 33.47 2.10
2407 5347 8.093927 AGAAAGAGTCTTCTGGAAACATTCTAG 58.906 37.037 5.70 0.00 39.38 2.43
2408 5348 7.546250 AAGAGTCTTCTGGAAACATTCTAGA 57.454 36.000 0.00 2.48 44.24 2.43
2409 5349 7.169158 AGAGTCTTCTGGAAACATTCTAGAG 57.831 40.000 6.33 2.85 46.03 2.43
2410 5350 5.729510 AGTCTTCTGGAAACATTCTAGAGC 58.270 41.667 6.33 2.92 46.03 4.09
2411 5351 5.247110 AGTCTTCTGGAAACATTCTAGAGCA 59.753 40.000 6.33 0.00 46.03 4.26
2412 5352 5.580297 GTCTTCTGGAAACATTCTAGAGCAG 59.420 44.000 6.33 3.51 46.03 4.24
2413 5353 5.481824 TCTTCTGGAAACATTCTAGAGCAGA 59.518 40.000 6.33 5.41 46.03 4.26
2414 5354 6.014242 TCTTCTGGAAACATTCTAGAGCAGAA 60.014 38.462 6.33 0.00 46.03 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.252742 CAGAGGGGTAGGGTTCCTGT 60.253 60.000 0.00 0.00 34.61 4.00
3 4 2.376165 GGCAGAGGGGTAGGGTTCC 61.376 68.421 0.00 0.00 0.00 3.62
4 5 1.307084 AGGCAGAGGGGTAGGGTTC 60.307 63.158 0.00 0.00 0.00 3.62
5 6 1.307084 GAGGCAGAGGGGTAGGGTT 60.307 63.158 0.00 0.00 0.00 4.11
6 7 2.369001 GAGGCAGAGGGGTAGGGT 59.631 66.667 0.00 0.00 0.00 4.34
7 8 2.840102 CGAGGCAGAGGGGTAGGG 60.840 72.222 0.00 0.00 0.00 3.53
8 9 3.541713 GCGAGGCAGAGGGGTAGG 61.542 72.222 0.00 0.00 0.00 3.18
9 10 3.541713 GGCGAGGCAGAGGGGTAG 61.542 72.222 0.00 0.00 0.00 3.18
24 25 4.329545 TCTTGGCTGTGACGGGGC 62.330 66.667 0.00 0.00 0.00 5.80
25 26 1.903877 ATCTCTTGGCTGTGACGGGG 61.904 60.000 0.00 0.00 0.00 5.73
26 27 0.460987 GATCTCTTGGCTGTGACGGG 60.461 60.000 0.00 0.00 0.00 5.28
27 28 0.247460 TGATCTCTTGGCTGTGACGG 59.753 55.000 0.00 0.00 0.00 4.79
28 29 1.203287 TCTGATCTCTTGGCTGTGACG 59.797 52.381 0.00 0.00 0.00 4.35
29 30 3.260740 CTTCTGATCTCTTGGCTGTGAC 58.739 50.000 0.00 0.00 0.00 3.67
30 31 2.235650 CCTTCTGATCTCTTGGCTGTGA 59.764 50.000 0.00 0.00 0.00 3.58
31 32 2.630158 CCTTCTGATCTCTTGGCTGTG 58.370 52.381 0.00 0.00 0.00 3.66
32 33 1.065564 GCCTTCTGATCTCTTGGCTGT 60.066 52.381 11.27 0.00 37.58 4.40
33 34 1.666054 GCCTTCTGATCTCTTGGCTG 58.334 55.000 11.27 0.00 37.58 4.85
34 35 0.177604 CGCCTTCTGATCTCTTGGCT 59.822 55.000 14.75 0.00 38.33 4.75
35 36 1.435408 GCGCCTTCTGATCTCTTGGC 61.435 60.000 0.00 9.30 37.24 4.52
36 37 0.107993 TGCGCCTTCTGATCTCTTGG 60.108 55.000 4.18 0.00 0.00 3.61
37 38 1.288350 CTGCGCCTTCTGATCTCTTG 58.712 55.000 4.18 0.00 0.00 3.02
38 39 0.461693 GCTGCGCCTTCTGATCTCTT 60.462 55.000 4.18 0.00 0.00 2.85
39 40 1.143620 GCTGCGCCTTCTGATCTCT 59.856 57.895 4.18 0.00 0.00 3.10
40 41 2.236382 CGCTGCGCCTTCTGATCTC 61.236 63.158 9.88 0.00 0.00 2.75
41 42 2.202851 CGCTGCGCCTTCTGATCT 60.203 61.111 9.88 0.00 0.00 2.75
42 43 3.267860 CCGCTGCGCCTTCTGATC 61.268 66.667 18.00 0.00 0.00 2.92
43 44 3.729965 CTCCGCTGCGCCTTCTGAT 62.730 63.158 18.00 0.00 0.00 2.90
44 45 4.441695 CTCCGCTGCGCCTTCTGA 62.442 66.667 18.00 6.39 0.00 3.27
72 73 1.741028 TCCATCACTTGTCCCAAGGA 58.259 50.000 8.68 3.92 0.00 3.36
73 74 2.756760 CAATCCATCACTTGTCCCAAGG 59.243 50.000 8.68 0.00 0.00 3.61
74 75 2.756760 CCAATCCATCACTTGTCCCAAG 59.243 50.000 2.54 2.54 0.00 3.61
75 76 2.109834 ACCAATCCATCACTTGTCCCAA 59.890 45.455 0.00 0.00 0.00 4.12
76 77 1.710244 ACCAATCCATCACTTGTCCCA 59.290 47.619 0.00 0.00 0.00 4.37
77 78 2.514458 ACCAATCCATCACTTGTCCC 57.486 50.000 0.00 0.00 0.00 4.46
78 79 5.192927 TGATTACCAATCCATCACTTGTCC 58.807 41.667 0.00 0.00 37.09 4.02
79 80 6.115446 TCTGATTACCAATCCATCACTTGTC 58.885 40.000 0.00 0.00 37.09 3.18
80 81 6.065976 TCTGATTACCAATCCATCACTTGT 57.934 37.500 0.00 0.00 37.09 3.16
81 82 5.530171 CCTCTGATTACCAATCCATCACTTG 59.470 44.000 0.00 0.00 37.09 3.16
82 83 5.429762 TCCTCTGATTACCAATCCATCACTT 59.570 40.000 0.00 0.00 37.09 3.16
83 84 4.971282 TCCTCTGATTACCAATCCATCACT 59.029 41.667 0.00 0.00 37.09 3.41
84 85 5.296151 TCCTCTGATTACCAATCCATCAC 57.704 43.478 0.00 0.00 37.09 3.06
85 86 5.221986 CCATCCTCTGATTACCAATCCATCA 60.222 44.000 0.00 0.00 37.09 3.07
86 87 5.251764 CCATCCTCTGATTACCAATCCATC 58.748 45.833 0.00 0.00 37.09 3.51
87 88 4.043812 CCCATCCTCTGATTACCAATCCAT 59.956 45.833 0.00 0.00 37.09 3.41
88 89 3.395607 CCCATCCTCTGATTACCAATCCA 59.604 47.826 0.00 0.00 37.09 3.41
89 90 3.245052 CCCCATCCTCTGATTACCAATCC 60.245 52.174 0.00 0.00 37.09 3.01
90 91 3.652869 TCCCCATCCTCTGATTACCAATC 59.347 47.826 0.00 0.00 38.40 2.67
91 92 3.395941 GTCCCCATCCTCTGATTACCAAT 59.604 47.826 0.00 0.00 0.00 3.16
92 93 2.777692 GTCCCCATCCTCTGATTACCAA 59.222 50.000 0.00 0.00 0.00 3.67
93 94 2.408565 GTCCCCATCCTCTGATTACCA 58.591 52.381 0.00 0.00 0.00 3.25
94 95 1.344763 CGTCCCCATCCTCTGATTACC 59.655 57.143 0.00 0.00 0.00 2.85
95 96 2.317040 TCGTCCCCATCCTCTGATTAC 58.683 52.381 0.00 0.00 0.00 1.89
96 97 2.767644 TCGTCCCCATCCTCTGATTA 57.232 50.000 0.00 0.00 0.00 1.75
97 98 1.696336 CATCGTCCCCATCCTCTGATT 59.304 52.381 0.00 0.00 0.00 2.57
98 99 1.346062 CATCGTCCCCATCCTCTGAT 58.654 55.000 0.00 0.00 0.00 2.90
99 100 0.760567 CCATCGTCCCCATCCTCTGA 60.761 60.000 0.00 0.00 0.00 3.27
100 101 1.050988 ACCATCGTCCCCATCCTCTG 61.051 60.000 0.00 0.00 0.00 3.35
101 102 0.760945 GACCATCGTCCCCATCCTCT 60.761 60.000 0.00 0.00 32.40 3.69
102 103 0.760945 AGACCATCGTCCCCATCCTC 60.761 60.000 0.00 0.00 40.12 3.71
103 104 0.760945 GAGACCATCGTCCCCATCCT 60.761 60.000 0.00 0.00 40.12 3.24
104 105 1.749033 GAGACCATCGTCCCCATCC 59.251 63.158 0.00 0.00 40.12 3.51
105 106 1.364171 CGAGACCATCGTCCCCATC 59.636 63.158 0.00 0.00 46.62 3.51
106 107 3.538614 CGAGACCATCGTCCCCAT 58.461 61.111 0.00 0.00 46.62 4.00
119 120 3.844858 TTTTTCGCCGCCGTCGAGA 62.845 57.895 0.00 0.00 37.26 4.04
120 121 2.612335 GATTTTTCGCCGCCGTCGAG 62.612 60.000 0.00 0.00 37.26 4.04
121 122 2.732670 GATTTTTCGCCGCCGTCGA 61.733 57.895 0.00 0.00 38.10 4.20
122 123 2.276430 GATTTTTCGCCGCCGTCG 60.276 61.111 0.00 0.00 35.54 5.12
123 124 2.276430 CGATTTTTCGCCGCCGTC 60.276 61.111 0.00 0.00 35.54 4.79
131 132 3.514362 CCCGGGGGCGATTTTTCG 61.514 66.667 14.71 0.00 0.00 3.46
132 133 2.044749 TCCCGGGGGCGATTTTTC 60.045 61.111 23.50 0.00 34.68 2.29
133 134 2.044352 CTCCCGGGGGCGATTTTT 60.044 61.111 23.50 0.00 34.68 1.94
134 135 4.123545 CCTCCCGGGGGCGATTTT 62.124 66.667 23.50 0.00 34.68 1.82
140 141 2.303282 TTTTACTCCTCCCGGGGGC 61.303 63.158 23.50 0.00 39.85 5.80
141 142 1.605992 GTTTTACTCCTCCCGGGGG 59.394 63.158 23.50 19.89 42.61 5.40
142 143 1.605992 GGTTTTACTCCTCCCGGGG 59.394 63.158 23.50 6.77 36.58 5.73
143 144 0.912968 AGGGTTTTACTCCTCCCGGG 60.913 60.000 16.85 16.85 44.13 5.73
144 145 1.870064 TAGGGTTTTACTCCTCCCGG 58.130 55.000 0.00 0.00 44.13 5.73
145 146 2.417787 CGTTAGGGTTTTACTCCTCCCG 60.418 54.545 0.00 0.00 44.13 5.14
146 147 2.568956 ACGTTAGGGTTTTACTCCTCCC 59.431 50.000 0.00 0.00 40.16 4.30
147 148 3.259123 TCACGTTAGGGTTTTACTCCTCC 59.741 47.826 0.00 0.00 34.75 4.30
148 149 4.492611 CTCACGTTAGGGTTTTACTCCTC 58.507 47.826 0.00 0.00 34.75 3.71
149 150 3.260128 CCTCACGTTAGGGTTTTACTCCT 59.740 47.826 7.98 0.00 37.18 3.69
150 151 3.593096 CCTCACGTTAGGGTTTTACTCC 58.407 50.000 7.98 0.00 32.55 3.85
160 161 4.571919 TGTATGTTTTCCCTCACGTTAGG 58.428 43.478 8.93 8.93 36.30 2.69
161 162 6.106673 AGATGTATGTTTTCCCTCACGTTAG 58.893 40.000 0.00 0.00 0.00 2.34
162 163 6.045072 AGATGTATGTTTTCCCTCACGTTA 57.955 37.500 0.00 0.00 0.00 3.18
163 164 4.906618 AGATGTATGTTTTCCCTCACGTT 58.093 39.130 0.00 0.00 0.00 3.99
164 165 4.553330 AGATGTATGTTTTCCCTCACGT 57.447 40.909 0.00 0.00 0.00 4.49
165 166 5.178797 AGAAGATGTATGTTTTCCCTCACG 58.821 41.667 0.00 0.00 0.00 4.35
166 167 9.832445 TTATAGAAGATGTATGTTTTCCCTCAC 57.168 33.333 0.00 0.00 0.00 3.51
192 193 9.289782 GCCCATGAAAAATATTGTATCTCTACT 57.710 33.333 0.00 0.00 0.00 2.57
193 194 9.289782 AGCCCATGAAAAATATTGTATCTCTAC 57.710 33.333 0.00 0.00 0.00 2.59
194 195 9.507329 GAGCCCATGAAAAATATTGTATCTCTA 57.493 33.333 0.00 0.00 0.00 2.43
195 196 7.449704 GGAGCCCATGAAAAATATTGTATCTCT 59.550 37.037 0.00 0.00 0.00 3.10
196 197 7.449704 AGGAGCCCATGAAAAATATTGTATCTC 59.550 37.037 0.00 0.00 0.00 2.75
197 198 7.300658 AGGAGCCCATGAAAAATATTGTATCT 58.699 34.615 0.00 0.00 0.00 1.98
198 199 7.231317 TGAGGAGCCCATGAAAAATATTGTATC 59.769 37.037 0.00 0.00 0.00 2.24
199 200 7.068702 TGAGGAGCCCATGAAAAATATTGTAT 58.931 34.615 0.00 0.00 0.00 2.29
200 201 6.430864 TGAGGAGCCCATGAAAAATATTGTA 58.569 36.000 0.00 0.00 0.00 2.41
201 202 5.271598 TGAGGAGCCCATGAAAAATATTGT 58.728 37.500 0.00 0.00 0.00 2.71
202 203 5.857471 TGAGGAGCCCATGAAAAATATTG 57.143 39.130 0.00 0.00 0.00 1.90
203 204 6.042437 GGATTGAGGAGCCCATGAAAAATATT 59.958 38.462 0.00 0.00 0.00 1.28
204 205 5.541484 GGATTGAGGAGCCCATGAAAAATAT 59.459 40.000 0.00 0.00 0.00 1.28
205 206 4.895297 GGATTGAGGAGCCCATGAAAAATA 59.105 41.667 0.00 0.00 0.00 1.40
206 207 3.708121 GGATTGAGGAGCCCATGAAAAAT 59.292 43.478 0.00 0.00 0.00 1.82
207 208 3.099141 GGATTGAGGAGCCCATGAAAAA 58.901 45.455 0.00 0.00 0.00 1.94
208 209 2.042842 TGGATTGAGGAGCCCATGAAAA 59.957 45.455 0.00 0.00 30.79 2.29
209 210 1.640149 TGGATTGAGGAGCCCATGAAA 59.360 47.619 0.00 0.00 30.79 2.69
210 211 1.297968 TGGATTGAGGAGCCCATGAA 58.702 50.000 0.00 0.00 30.79 2.57
211 212 1.297968 TTGGATTGAGGAGCCCATGA 58.702 50.000 0.00 0.00 30.79 3.07
212 213 2.236766 GATTGGATTGAGGAGCCCATG 58.763 52.381 0.00 0.00 30.79 3.66
213 214 1.146566 GGATTGGATTGAGGAGCCCAT 59.853 52.381 0.00 0.00 30.79 4.00
214 215 0.552848 GGATTGGATTGAGGAGCCCA 59.447 55.000 0.00 0.00 30.79 5.36
215 216 0.178978 GGGATTGGATTGAGGAGCCC 60.179 60.000 0.00 0.00 30.79 5.19
216 217 0.552848 TGGGATTGGATTGAGGAGCC 59.447 55.000 0.00 0.00 0.00 4.70
217 218 1.213926 ACTGGGATTGGATTGAGGAGC 59.786 52.381 0.00 0.00 0.00 4.70
218 219 4.778213 TTACTGGGATTGGATTGAGGAG 57.222 45.455 0.00 0.00 0.00 3.69
219 220 5.193527 TCATTTACTGGGATTGGATTGAGGA 59.806 40.000 0.00 0.00 0.00 3.71
220 221 5.448654 TCATTTACTGGGATTGGATTGAGG 58.551 41.667 0.00 0.00 0.00 3.86
221 222 6.040166 CCTTCATTTACTGGGATTGGATTGAG 59.960 42.308 0.00 0.00 0.00 3.02
222 223 5.893255 CCTTCATTTACTGGGATTGGATTGA 59.107 40.000 0.00 0.00 0.00 2.57
223 224 5.452356 GCCTTCATTTACTGGGATTGGATTG 60.452 44.000 0.00 0.00 0.00 2.67
224 225 4.651045 GCCTTCATTTACTGGGATTGGATT 59.349 41.667 0.00 0.00 0.00 3.01
225 226 4.218312 GCCTTCATTTACTGGGATTGGAT 58.782 43.478 0.00 0.00 0.00 3.41
226 227 3.011144 TGCCTTCATTTACTGGGATTGGA 59.989 43.478 0.00 0.00 0.00 3.53
227 228 3.364549 TGCCTTCATTTACTGGGATTGG 58.635 45.455 0.00 0.00 0.00 3.16
228 229 4.463891 AGTTGCCTTCATTTACTGGGATTG 59.536 41.667 0.00 0.00 0.00 2.67
229 230 4.677182 AGTTGCCTTCATTTACTGGGATT 58.323 39.130 0.00 0.00 0.00 3.01
230 231 4.322057 AGTTGCCTTCATTTACTGGGAT 57.678 40.909 0.00 0.00 0.00 3.85
231 232 3.806949 AGTTGCCTTCATTTACTGGGA 57.193 42.857 0.00 0.00 0.00 4.37
232 233 5.242838 TGTTTAGTTGCCTTCATTTACTGGG 59.757 40.000 0.00 0.00 0.00 4.45
233 234 6.325919 TGTTTAGTTGCCTTCATTTACTGG 57.674 37.500 0.00 0.00 0.00 4.00
282 291 2.773087 TGTAAACACTATATGGGCCGGT 59.227 45.455 1.90 0.00 0.00 5.28
285 294 6.212791 TCTCCTATGTAAACACTATATGGGCC 59.787 42.308 0.00 0.00 0.00 5.80
286 295 7.038941 AGTCTCCTATGTAAACACTATATGGGC 60.039 40.741 0.00 0.00 0.00 5.36
289 298 7.751348 GCGAGTCTCCTATGTAAACACTATATG 59.249 40.741 0.00 0.00 0.00 1.78
290 299 7.666388 AGCGAGTCTCCTATGTAAACACTATAT 59.334 37.037 0.00 0.00 0.00 0.86
291 300 6.996879 AGCGAGTCTCCTATGTAAACACTATA 59.003 38.462 0.00 0.00 0.00 1.31
292 301 5.828859 AGCGAGTCTCCTATGTAAACACTAT 59.171 40.000 0.00 0.00 0.00 2.12
293 302 5.191426 AGCGAGTCTCCTATGTAAACACTA 58.809 41.667 0.00 0.00 0.00 2.74
294 303 4.017808 AGCGAGTCTCCTATGTAAACACT 58.982 43.478 0.00 0.00 0.00 3.55
321 330 3.215975 AGTCACCTATTCTAGAGCGTCC 58.784 50.000 0.00 0.00 0.00 4.79
322 331 4.904253 AAGTCACCTATTCTAGAGCGTC 57.096 45.455 0.00 0.00 0.00 5.19
341 350 4.479619 CGAGCCAGGAAAATCAAGAAAAG 58.520 43.478 0.00 0.00 0.00 2.27
342 351 3.305335 GCGAGCCAGGAAAATCAAGAAAA 60.305 43.478 0.00 0.00 0.00 2.29
343 352 2.228822 GCGAGCCAGGAAAATCAAGAAA 59.771 45.455 0.00 0.00 0.00 2.52
344 353 1.812571 GCGAGCCAGGAAAATCAAGAA 59.187 47.619 0.00 0.00 0.00 2.52
345 354 1.271325 TGCGAGCCAGGAAAATCAAGA 60.271 47.619 0.00 0.00 0.00 3.02
454 463 4.948847 AGCGAGATTTTCTTTTTGCCTTT 58.051 34.783 0.00 0.00 0.00 3.11
459 468 7.695618 CCATCTAGAAGCGAGATTTTCTTTTTG 59.304 37.037 0.00 0.00 35.42 2.44
460 469 7.607991 TCCATCTAGAAGCGAGATTTTCTTTTT 59.392 33.333 0.00 0.00 35.42 1.94
473 482 3.748568 GCCCTAATTTCCATCTAGAAGCG 59.251 47.826 0.00 0.00 0.00 4.68
500 509 1.227999 CGAATTCTGGCGGTGTGTGT 61.228 55.000 3.52 0.00 0.00 3.72
538 547 2.581354 CCGACTTCCCTGCTCCTG 59.419 66.667 0.00 0.00 0.00 3.86
579 588 4.481112 GGGCAAGGCAACGCGATG 62.481 66.667 15.93 14.01 46.39 3.84
630 640 1.142965 GCTGTTTTGGTTTGGGCGT 59.857 52.632 0.00 0.00 0.00 5.68
665 676 2.951383 GATCTCCACGTCGACTCGCG 62.951 65.000 14.70 0.00 42.69 5.87
666 677 1.297745 GATCTCCACGTCGACTCGC 60.298 63.158 14.70 0.00 0.00 5.03
667 678 1.352404 GGATCTCCACGTCGACTCG 59.648 63.158 14.70 3.66 35.64 4.18
668 679 1.728672 GGGATCTCCACGTCGACTC 59.271 63.158 14.70 1.92 37.91 3.36
669 680 2.113433 CGGGATCTCCACGTCGACT 61.113 63.158 14.70 0.00 37.91 4.18
670 681 2.408022 CGGGATCTCCACGTCGAC 59.592 66.667 5.18 5.18 37.91 4.20
708 723 0.111253 GCCTACCATAGCCATGCCTT 59.889 55.000 0.00 0.00 0.00 4.35
799 825 2.280119 GTCAGCGGCGGCATCATA 60.280 61.111 19.21 0.00 43.41 2.15
833 859 5.689514 CGCTGGTTGATATTTGTTTTTGTGA 59.310 36.000 0.00 0.00 0.00 3.58
865 3787 4.688511 TTGTTTTTATAACGCAGCGGAT 57.311 36.364 21.15 14.36 0.00 4.18
905 3827 1.296392 CAGGTGAGACGGGAATGCA 59.704 57.895 0.00 0.00 0.00 3.96
996 3923 0.394352 GGGGCGGTGAAATCATCAGT 60.394 55.000 0.00 0.00 39.19 3.41
997 3924 1.103398 GGGGGCGGTGAAATCATCAG 61.103 60.000 0.00 0.00 39.19 2.90
1431 4358 1.080839 GCTCTGGATCGATCGAGGC 60.081 63.158 29.78 26.56 33.98 4.70
1436 4363 0.665972 GCCGAAGCTCTGGATCGATC 60.666 60.000 17.36 17.36 38.82 3.69
1583 4510 3.988976 TTCAGGAGATCAAGGACAAGG 57.011 47.619 0.00 0.00 0.00 3.61
1584 4511 4.634883 CACATTCAGGAGATCAAGGACAAG 59.365 45.833 0.00 0.00 0.00 3.16
1585 4512 4.582869 CACATTCAGGAGATCAAGGACAA 58.417 43.478 0.00 0.00 0.00 3.18
1586 4513 3.620719 GCACATTCAGGAGATCAAGGACA 60.621 47.826 0.00 0.00 0.00 4.02
1587 4514 2.941720 GCACATTCAGGAGATCAAGGAC 59.058 50.000 0.00 0.00 0.00 3.85
1588 4515 2.573009 TGCACATTCAGGAGATCAAGGA 59.427 45.455 0.00 0.00 0.00 3.36
1589 4516 2.943690 CTGCACATTCAGGAGATCAAGG 59.056 50.000 0.00 0.00 0.00 3.61
1598 4525 3.340928 TGAAGATCACTGCACATTCAGG 58.659 45.455 0.00 0.00 38.36 3.86
1666 4593 3.621268 ACAATGTCGACCCGAAATGTATG 59.379 43.478 14.12 0.00 37.72 2.39
1784 4716 0.036199 CACCCACCCAATTGGCAATG 60.036 55.000 19.75 15.39 37.83 2.82
1877 4809 7.777910 TGCTAATGGTATATTTAAGGTTGTGCT 59.222 33.333 0.00 0.00 0.00 4.40
1914 4846 4.284178 AGGCCAATGCATCAGTAAAATCT 58.716 39.130 5.01 0.00 40.13 2.40
1929 4861 1.330655 ACCAGATCGACGAGGCCAAT 61.331 55.000 5.01 0.00 0.00 3.16
1972 4905 0.385751 TGCCGCGAAATTCCACAAAA 59.614 45.000 8.23 0.00 0.00 2.44
2011 4944 3.424529 GTCACGAAACTACGTTTCTGAGG 59.575 47.826 15.07 4.83 46.55 3.86
2026 4959 6.656314 ATCGCACTTTAATTATGTCACGAA 57.344 33.333 13.01 0.00 0.00 3.85
2029 4962 9.982291 TTAAGAATCGCACTTTAATTATGTCAC 57.018 29.630 0.00 0.00 0.00 3.67
2040 4973 8.997621 TTGAGTAGTATTAAGAATCGCACTTT 57.002 30.769 0.00 0.00 0.00 2.66
2042 4975 8.997621 TTTTGAGTAGTATTAAGAATCGCACT 57.002 30.769 0.00 0.00 0.00 4.40
2086 5026 9.241919 TCCATAAAGTCAGAAGCAATTTGATTA 57.758 29.630 0.00 0.00 0.00 1.75
2139 5079 2.858941 CGAGATGTTGCACAGATGAGAG 59.141 50.000 0.00 0.00 0.00 3.20
2146 5086 2.340337 TCATGACGAGATGTTGCACAG 58.660 47.619 0.00 0.00 0.00 3.66
2174 5114 5.410439 GGGAGTACATTCTTTCGCTTGTTAA 59.590 40.000 0.00 0.00 0.00 2.01
2179 5119 3.983044 AGGGAGTACATTCTTTCGCTT 57.017 42.857 0.00 0.00 29.78 4.68
2180 5120 3.767673 TGTAGGGAGTACATTCTTTCGCT 59.232 43.478 0.00 0.00 36.67 4.93
2181 5121 4.119442 TGTAGGGAGTACATTCTTTCGC 57.881 45.455 0.00 0.00 36.67 4.70
2190 5130 7.504926 AGTAAATCCAAATGTAGGGAGTACA 57.495 36.000 0.00 0.00 45.93 2.90
2191 5131 6.700520 CGAGTAAATCCAAATGTAGGGAGTAC 59.299 42.308 0.00 0.00 36.45 2.73
2192 5132 6.381994 ACGAGTAAATCCAAATGTAGGGAGTA 59.618 38.462 0.00 0.00 36.45 2.59
2193 5133 5.189145 ACGAGTAAATCCAAATGTAGGGAGT 59.811 40.000 0.00 0.00 36.45 3.85
2194 5134 5.671493 ACGAGTAAATCCAAATGTAGGGAG 58.329 41.667 0.00 0.00 36.45 4.30
2195 5135 5.667466 GACGAGTAAATCCAAATGTAGGGA 58.333 41.667 0.00 0.00 37.64 4.20
2196 5136 4.506654 CGACGAGTAAATCCAAATGTAGGG 59.493 45.833 0.00 0.00 0.00 3.53
2197 5137 5.005394 CACGACGAGTAAATCCAAATGTAGG 59.995 44.000 0.00 0.00 0.00 3.18
2198 5138 5.005394 CCACGACGAGTAAATCCAAATGTAG 59.995 44.000 0.00 0.00 0.00 2.74
2199 5139 4.865925 CCACGACGAGTAAATCCAAATGTA 59.134 41.667 0.00 0.00 0.00 2.29
2200 5140 3.682858 CCACGACGAGTAAATCCAAATGT 59.317 43.478 0.00 0.00 0.00 2.71
2201 5141 3.682858 ACCACGACGAGTAAATCCAAATG 59.317 43.478 0.00 0.00 0.00 2.32
2202 5142 3.934068 ACCACGACGAGTAAATCCAAAT 58.066 40.909 0.00 0.00 0.00 2.32
2203 5143 3.389925 ACCACGACGAGTAAATCCAAA 57.610 42.857 0.00 0.00 0.00 3.28
2204 5144 3.389925 AACCACGACGAGTAAATCCAA 57.610 42.857 0.00 0.00 0.00 3.53
2205 5145 3.389925 AAACCACGACGAGTAAATCCA 57.610 42.857 0.00 0.00 0.00 3.41
2206 5146 4.925646 ACTAAAACCACGACGAGTAAATCC 59.074 41.667 0.00 0.00 0.00 3.01
2207 5147 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
2208 5148 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
2209 5149 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
2210 5150 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
2211 5151 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
2212 5152 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
2213 5153 3.800506 AGTTGAACTAAAACCACGACGAG 59.199 43.478 0.00 0.00 0.00 4.18
2214 5154 3.784338 AGTTGAACTAAAACCACGACGA 58.216 40.909 0.00 0.00 0.00 4.20
2215 5155 4.268522 CAAGTTGAACTAAAACCACGACG 58.731 43.478 0.00 0.00 0.00 5.12
2216 5156 4.033019 GCAAGTTGAACTAAAACCACGAC 58.967 43.478 7.16 0.00 0.00 4.34
2217 5157 3.690139 TGCAAGTTGAACTAAAACCACGA 59.310 39.130 7.16 0.00 0.00 4.35
2218 5158 4.022464 TGCAAGTTGAACTAAAACCACG 57.978 40.909 7.16 0.00 0.00 4.94
2219 5159 6.966021 TCTATGCAAGTTGAACTAAAACCAC 58.034 36.000 7.16 0.00 0.00 4.16
2220 5160 7.575414 TTCTATGCAAGTTGAACTAAAACCA 57.425 32.000 7.16 0.00 0.00 3.67
2221 5161 9.476202 AAATTCTATGCAAGTTGAACTAAAACC 57.524 29.630 7.16 0.00 0.00 3.27
2276 5216 4.770874 TTAGGCCGGGCAAGCGTC 62.771 66.667 31.59 1.49 0.00 5.19
2277 5217 4.338710 TTTAGGCCGGGCAAGCGT 62.339 61.111 31.59 11.72 0.00 5.07
2278 5218 3.508840 CTTTAGGCCGGGCAAGCG 61.509 66.667 31.59 11.82 0.00 4.68
2279 5219 1.037579 ATTCTTTAGGCCGGGCAAGC 61.038 55.000 31.59 3.16 0.00 4.01
2280 5220 0.740737 CATTCTTTAGGCCGGGCAAG 59.259 55.000 31.59 24.43 0.00 4.01
2281 5221 0.329931 TCATTCTTTAGGCCGGGCAA 59.670 50.000 31.59 18.85 0.00 4.52
2282 5222 0.107214 CTCATTCTTTAGGCCGGGCA 60.107 55.000 31.59 13.56 0.00 5.36
2283 5223 0.819666 CCTCATTCTTTAGGCCGGGC 60.820 60.000 22.67 22.67 0.00 6.13
2284 5224 3.403936 CCTCATTCTTTAGGCCGGG 57.596 57.895 2.18 0.00 0.00 5.73
2289 5229 3.459969 ACCTAAGGGCCTCATTCTTTAGG 59.540 47.826 19.24 19.24 35.63 2.69
2290 5230 4.779993 ACCTAAGGGCCTCATTCTTTAG 57.220 45.455 6.46 2.46 35.63 1.85
2291 5231 5.104235 GGTTACCTAAGGGCCTCATTCTTTA 60.104 44.000 6.46 0.00 35.63 1.85
2292 5232 4.325109 GGTTACCTAAGGGCCTCATTCTTT 60.325 45.833 6.46 0.00 35.63 2.52
2293 5233 3.202373 GGTTACCTAAGGGCCTCATTCTT 59.798 47.826 6.46 0.00 35.63 2.52
2294 5234 2.778270 GGTTACCTAAGGGCCTCATTCT 59.222 50.000 6.46 0.00 35.63 2.40
2295 5235 2.508300 TGGTTACCTAAGGGCCTCATTC 59.492 50.000 6.46 0.00 35.63 2.67
2296 5236 2.568979 TGGTTACCTAAGGGCCTCATT 58.431 47.619 6.46 0.00 35.63 2.57
2297 5237 2.280308 TGGTTACCTAAGGGCCTCAT 57.720 50.000 6.46 0.00 35.63 2.90
2298 5238 2.047769 TTGGTTACCTAAGGGCCTCA 57.952 50.000 6.46 0.00 35.63 3.86
2299 5239 2.307980 ACTTTGGTTACCTAAGGGCCTC 59.692 50.000 24.57 0.00 39.87 4.70
2300 5240 2.355309 ACTTTGGTTACCTAAGGGCCT 58.645 47.619 24.57 0.00 39.87 5.19
2301 5241 2.893215 ACTTTGGTTACCTAAGGGCC 57.107 50.000 24.57 0.00 39.87 5.80
2302 5242 4.290711 TGTACTTTGGTTACCTAAGGGC 57.709 45.455 24.57 17.74 39.87 5.19
2303 5243 5.878669 GTCATGTACTTTGGTTACCTAAGGG 59.121 44.000 24.57 11.67 39.87 3.95
2304 5244 6.469410 TGTCATGTACTTTGGTTACCTAAGG 58.531 40.000 24.57 11.01 39.87 2.69
2305 5245 7.442969 TGTTGTCATGTACTTTGGTTACCTAAG 59.557 37.037 20.70 20.70 40.99 2.18
2306 5246 7.281098 TGTTGTCATGTACTTTGGTTACCTAA 58.719 34.615 2.07 0.00 0.00 2.69
2307 5247 6.828788 TGTTGTCATGTACTTTGGTTACCTA 58.171 36.000 2.07 0.00 0.00 3.08
2308 5248 5.686753 TGTTGTCATGTACTTTGGTTACCT 58.313 37.500 2.07 0.00 0.00 3.08
2309 5249 6.380095 TTGTTGTCATGTACTTTGGTTACC 57.620 37.500 0.00 0.00 0.00 2.85
2310 5250 8.349983 AGAATTGTTGTCATGTACTTTGGTTAC 58.650 33.333 0.00 0.00 0.00 2.50
2311 5251 8.458573 AGAATTGTTGTCATGTACTTTGGTTA 57.541 30.769 0.00 0.00 0.00 2.85
2312 5252 7.346751 AGAATTGTTGTCATGTACTTTGGTT 57.653 32.000 0.00 0.00 0.00 3.67
2313 5253 6.959639 AGAATTGTTGTCATGTACTTTGGT 57.040 33.333 0.00 0.00 0.00 3.67
2314 5254 8.647143 AAAAGAATTGTTGTCATGTACTTTGG 57.353 30.769 0.00 0.00 0.00 3.28
2315 5255 9.904647 CAAAAAGAATTGTTGTCATGTACTTTG 57.095 29.630 0.00 0.00 0.00 2.77
2316 5256 9.868277 TCAAAAAGAATTGTTGTCATGTACTTT 57.132 25.926 0.00 0.00 0.00 2.66
2317 5257 9.520204 CTCAAAAAGAATTGTTGTCATGTACTT 57.480 29.630 0.00 0.00 0.00 2.24
2318 5258 8.902806 TCTCAAAAAGAATTGTTGTCATGTACT 58.097 29.630 0.00 0.00 0.00 2.73
2319 5259 9.173939 CTCTCAAAAAGAATTGTTGTCATGTAC 57.826 33.333 0.00 0.00 32.23 2.90
2320 5260 9.119418 TCTCTCAAAAAGAATTGTTGTCATGTA 57.881 29.630 0.00 0.00 32.23 2.29
2321 5261 7.999679 TCTCTCAAAAAGAATTGTTGTCATGT 58.000 30.769 0.00 0.00 32.23 3.21
2322 5262 8.861033 TTCTCTCAAAAAGAATTGTTGTCATG 57.139 30.769 0.00 0.00 32.23 3.07
2324 5264 9.304731 CATTTCTCTCAAAAAGAATTGTTGTCA 57.695 29.630 0.00 0.00 33.01 3.58
2325 5265 9.305925 ACATTTCTCTCAAAAAGAATTGTTGTC 57.694 29.630 7.30 0.00 41.20 3.18
2326 5266 9.090692 CACATTTCTCTCAAAAAGAATTGTTGT 57.909 29.630 9.47 0.00 41.67 3.32
2327 5267 8.545420 CCACATTTCTCTCAAAAAGAATTGTTG 58.455 33.333 9.47 4.91 41.67 3.33
2328 5268 7.712205 CCCACATTTCTCTCAAAAAGAATTGTT 59.288 33.333 9.47 0.00 41.67 2.83
2329 5269 7.212274 CCCACATTTCTCTCAAAAAGAATTGT 58.788 34.615 7.30 7.30 43.11 2.71
2330 5270 6.146673 GCCCACATTTCTCTCAAAAAGAATTG 59.853 38.462 0.00 0.00 38.84 2.32
2331 5271 6.042437 AGCCCACATTTCTCTCAAAAAGAATT 59.958 34.615 0.00 0.00 33.01 2.17
2332 5272 5.541484 AGCCCACATTTCTCTCAAAAAGAAT 59.459 36.000 0.00 0.00 33.01 2.40
2333 5273 4.895297 AGCCCACATTTCTCTCAAAAAGAA 59.105 37.500 0.00 0.00 32.23 2.52
2334 5274 4.473444 AGCCCACATTTCTCTCAAAAAGA 58.527 39.130 0.00 0.00 0.00 2.52
2335 5275 4.861102 AGCCCACATTTCTCTCAAAAAG 57.139 40.909 0.00 0.00 0.00 2.27
2336 5276 5.612725 AAAGCCCACATTTCTCTCAAAAA 57.387 34.783 0.00 0.00 0.00 1.94
2337 5277 6.916360 ATAAAGCCCACATTTCTCTCAAAA 57.084 33.333 0.00 0.00 0.00 2.44
2338 5278 6.493115 TCAATAAAGCCCACATTTCTCTCAAA 59.507 34.615 0.00 0.00 0.00 2.69
2339 5279 6.009589 TCAATAAAGCCCACATTTCTCTCAA 58.990 36.000 0.00 0.00 0.00 3.02
2340 5280 5.569355 TCAATAAAGCCCACATTTCTCTCA 58.431 37.500 0.00 0.00 0.00 3.27
2341 5281 6.705863 ATCAATAAAGCCCACATTTCTCTC 57.294 37.500 0.00 0.00 0.00 3.20
2342 5282 7.836183 AGTAATCAATAAAGCCCACATTTCTCT 59.164 33.333 0.00 0.00 0.00 3.10
2343 5283 8.000780 AGTAATCAATAAAGCCCACATTTCTC 57.999 34.615 0.00 0.00 0.00 2.87
2344 5284 7.961326 AGTAATCAATAAAGCCCACATTTCT 57.039 32.000 0.00 0.00 0.00 2.52
2345 5285 9.736023 CTAAGTAATCAATAAAGCCCACATTTC 57.264 33.333 0.00 0.00 0.00 2.17
2346 5286 9.474313 TCTAAGTAATCAATAAAGCCCACATTT 57.526 29.630 0.00 0.00 0.00 2.32
2347 5287 9.474313 TTCTAAGTAATCAATAAAGCCCACATT 57.526 29.630 0.00 0.00 0.00 2.71
2348 5288 8.903820 GTTCTAAGTAATCAATAAAGCCCACAT 58.096 33.333 0.00 0.00 0.00 3.21
2349 5289 7.885922 TGTTCTAAGTAATCAATAAAGCCCACA 59.114 33.333 0.00 0.00 0.00 4.17
2350 5290 8.276252 TGTTCTAAGTAATCAATAAAGCCCAC 57.724 34.615 0.00 0.00 0.00 4.61
2351 5291 8.871629 TTGTTCTAAGTAATCAATAAAGCCCA 57.128 30.769 0.00 0.00 0.00 5.36
2352 5292 9.788960 CTTTGTTCTAAGTAATCAATAAAGCCC 57.211 33.333 0.00 0.00 0.00 5.19
2369 5309 9.751542 CAGAAGACTCTTTCTAACTTTGTTCTA 57.248 33.333 0.00 0.00 35.70 2.10
2370 5310 7.713073 CCAGAAGACTCTTTCTAACTTTGTTCT 59.287 37.037 0.00 0.00 35.70 3.01
2371 5311 7.711339 TCCAGAAGACTCTTTCTAACTTTGTTC 59.289 37.037 0.00 0.00 35.70 3.18
2372 5312 7.565680 TCCAGAAGACTCTTTCTAACTTTGTT 58.434 34.615 0.00 0.00 35.70 2.83
2373 5313 7.125792 TCCAGAAGACTCTTTCTAACTTTGT 57.874 36.000 0.00 0.00 35.70 2.83
2374 5314 8.338986 GTTTCCAGAAGACTCTTTCTAACTTTG 58.661 37.037 0.00 0.00 35.70 2.77
2375 5315 8.047310 TGTTTCCAGAAGACTCTTTCTAACTTT 58.953 33.333 0.00 0.00 35.70 2.66
2376 5316 7.565680 TGTTTCCAGAAGACTCTTTCTAACTT 58.434 34.615 0.00 0.00 35.70 2.66
2377 5317 7.125792 TGTTTCCAGAAGACTCTTTCTAACT 57.874 36.000 0.00 0.00 35.70 2.24
2378 5318 7.971183 ATGTTTCCAGAAGACTCTTTCTAAC 57.029 36.000 0.00 0.00 35.70 2.34
2379 5319 8.432805 AGAATGTTTCCAGAAGACTCTTTCTAA 58.567 33.333 0.00 0.00 35.70 2.10
2380 5320 7.967908 AGAATGTTTCCAGAAGACTCTTTCTA 58.032 34.615 0.00 0.00 35.70 2.10
2381 5321 6.836242 AGAATGTTTCCAGAAGACTCTTTCT 58.164 36.000 0.00 0.00 37.90 2.52
2382 5322 8.091449 TCTAGAATGTTTCCAGAAGACTCTTTC 58.909 37.037 0.00 0.00 0.00 2.62
2383 5323 7.967908 TCTAGAATGTTTCCAGAAGACTCTTT 58.032 34.615 0.00 0.00 0.00 2.52
2384 5324 7.546250 TCTAGAATGTTTCCAGAAGACTCTT 57.454 36.000 0.00 0.00 0.00 2.85
2385 5325 6.350949 GCTCTAGAATGTTTCCAGAAGACTCT 60.351 42.308 0.00 0.00 27.21 3.24
2386 5326 5.810074 GCTCTAGAATGTTTCCAGAAGACTC 59.190 44.000 0.00 0.00 27.21 3.36
2387 5327 5.247110 TGCTCTAGAATGTTTCCAGAAGACT 59.753 40.000 0.00 0.00 27.21 3.24
2388 5328 5.482908 TGCTCTAGAATGTTTCCAGAAGAC 58.517 41.667 0.00 0.00 27.21 3.01
2389 5329 5.481824 TCTGCTCTAGAATGTTTCCAGAAGA 59.518 40.000 0.00 0.00 30.84 2.87
2390 5330 5.728471 TCTGCTCTAGAATGTTTCCAGAAG 58.272 41.667 0.00 0.00 30.84 2.85
2391 5331 5.745312 TCTGCTCTAGAATGTTTCCAGAA 57.255 39.130 0.00 0.00 30.84 3.02
2392 5332 5.745312 TTCTGCTCTAGAATGTTTCCAGA 57.255 39.130 0.00 0.00 40.43 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.