Multiple sequence alignment - TraesCS7B01G170300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G170300 chr7B 100.000 4279 0 0 1 4279 242357833 242353555 0.000000e+00 7902.0
1 TraesCS7B01G170300 chr7B 82.558 258 25 6 407 649 365650042 365649790 4.340000e-50 209.0
2 TraesCS7B01G170300 chr7A 94.808 3602 129 19 1 3567 285055583 285059161 0.000000e+00 5563.0
3 TraesCS7B01G170300 chr7A 90.455 440 37 4 3633 4072 285059168 285059602 3.710000e-160 575.0
4 TraesCS7B01G170300 chr7D 96.343 3035 79 15 670 3685 262023523 262026544 0.000000e+00 4961.0
5 TraesCS7B01G170300 chr7D 80.800 250 33 6 407 641 114375345 114375096 9.450000e-42 182.0
6 TraesCS7B01G170300 chr7D 91.011 89 8 0 3690 3778 262026579 262026667 2.090000e-23 121.0
7 TraesCS7B01G170300 chr7D 92.754 69 5 0 3764 3832 262034310 262034378 2.720000e-17 100.0
8 TraesCS7B01G170300 chr5A 83.691 932 135 11 1158 2076 537353531 537354458 0.000000e+00 863.0
9 TraesCS7B01G170300 chr5A 88.235 85 9 1 45 129 441077264 441077181 2.720000e-17 100.0
10 TraesCS7B01G170300 chr5D 83.584 932 136 11 1158 2076 423858810 423859737 0.000000e+00 857.0
11 TraesCS7B01G170300 chr5D 90.323 248 24 0 131 378 127559623 127559870 4.130000e-85 326.0
12 TraesCS7B01G170300 chr5D 87.402 254 31 1 131 383 102758201 102757948 1.510000e-74 291.0
13 TraesCS7B01G170300 chr5D 82.258 248 26 5 407 639 70520173 70519929 9.390000e-47 198.0
14 TraesCS7B01G170300 chr5D 89.655 145 15 0 407 551 409115732 409115876 7.310000e-43 185.0
15 TraesCS7B01G170300 chr5B 83.262 938 142 12 1158 2086 511695296 511696227 0.000000e+00 848.0
16 TraesCS7B01G170300 chr5B 81.395 258 28 6 407 649 217039498 217039246 4.370000e-45 193.0
17 TraesCS7B01G170300 chr2A 90.102 293 28 1 3987 4278 116432285 116432577 3.120000e-101 379.0
18 TraesCS7B01G170300 chr2A 87.109 256 33 0 131 386 401524693 401524948 1.510000e-74 291.0
19 TraesCS7B01G170300 chr2A 87.109 256 33 0 131 386 403512599 403512854 1.510000e-74 291.0
20 TraesCS7B01G170300 chr2A 86.585 164 20 1 407 568 187904356 187904519 3.400000e-41 180.0
21 TraesCS7B01G170300 chr2D 89.420 293 30 1 3987 4278 115089440 115089732 6.760000e-98 368.0
22 TraesCS7B01G170300 chr2D 90.789 152 14 0 408 559 427987722 427987873 2.020000e-48 204.0
23 TraesCS7B01G170300 chr2B 88.737 293 32 1 3987 4278 165502938 165503230 1.460000e-94 357.0
24 TraesCS7B01G170300 chr2B 91.489 47 2 2 563 608 242229412 242229457 3.570000e-06 63.9
25 TraesCS7B01G170300 chr3B 88.281 256 30 0 131 386 214451464 214451209 1.490000e-79 307.0
26 TraesCS7B01G170300 chr3B 89.855 69 5 1 63 129 295944992 295944924 2.120000e-13 87.9
27 TraesCS7B01G170300 chr1D 87.500 256 32 0 131 386 373057166 373057421 3.240000e-76 296.0
28 TraesCS7B01G170300 chrUn 87.402 254 31 1 131 383 313787021 313787274 1.510000e-74 291.0
29 TraesCS7B01G170300 chr3D 87.352 253 32 0 131 383 269194144 269193892 1.510000e-74 291.0
30 TraesCS7B01G170300 chr3D 88.281 128 14 1 3 130 475506800 475506926 7.410000e-33 152.0
31 TraesCS7B01G170300 chr3D 91.489 47 2 2 563 608 147277759 147277804 3.570000e-06 63.9
32 TraesCS7B01G170300 chr6B 88.889 162 17 1 408 568 169490342 169490503 9.390000e-47 198.0
33 TraesCS7B01G170300 chr4B 83.740 123 17 3 3 124 289383000 289382880 3.500000e-21 113.0
34 TraesCS7B01G170300 chr4D 97.297 37 1 0 572 608 292176516 292176480 3.570000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G170300 chr7B 242353555 242357833 4278 True 7902 7902 100.0000 1 4279 1 chr7B.!!$R1 4278
1 TraesCS7B01G170300 chr7A 285055583 285059602 4019 False 3069 5563 92.6315 1 4072 2 chr7A.!!$F1 4071
2 TraesCS7B01G170300 chr7D 262023523 262026667 3144 False 2541 4961 93.6770 670 3778 2 chr7D.!!$F2 3108
3 TraesCS7B01G170300 chr5A 537353531 537354458 927 False 863 863 83.6910 1158 2076 1 chr5A.!!$F1 918
4 TraesCS7B01G170300 chr5D 423858810 423859737 927 False 857 857 83.5840 1158 2076 1 chr5D.!!$F3 918
5 TraesCS7B01G170300 chr5B 511695296 511696227 931 False 848 848 83.2620 1158 2086 1 chr5B.!!$F1 928

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.107410 TTGCACACGTCCCAGAGTTT 60.107 50.0 0.00 0.0 0.00 2.66 F
157 158 0.107703 CTCAGGCGGCTTATGAACCA 60.108 55.0 9.66 0.0 0.00 3.67 F
174 175 0.663153 CCAGCTTAAGGCCGCAATAC 59.337 55.0 4.29 0.0 43.05 1.89 F
334 335 0.667487 CACACGACCGAGTTGAGCAT 60.667 55.0 0.00 0.0 0.00 3.79 F
1120 1126 0.744414 CCATTGCTCCGTTGACCGAT 60.744 55.0 0.00 0.0 39.56 4.18 F
2489 2534 1.007336 CCGACGTGCAGTACAACTCC 61.007 60.0 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1063 1069 0.034337 TTTCTTGGTCTCCGGTTCCG 59.966 55.0 0.00 4.08 0.00 4.30 R
1691 1706 0.037882 CGATGATGAGCCTGCCGTAT 60.038 55.0 0.00 0.00 0.00 3.06 R
1811 1826 0.101399 CCATTAGCTCGACGCACTCT 59.899 55.0 9.09 0.00 42.61 3.24 R
2124 2139 0.682855 CTGTTGGTGGTGGTGGTGTT 60.683 55.0 0.00 0.00 0.00 3.32 R
2789 2834 0.669625 GGTCCACGTGCAGGTAGTTC 60.670 60.0 12.40 3.48 0.00 3.01 R
4086 4166 0.037447 TGGTTGGATTGACGCATGGA 59.963 50.0 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.179100 TCGATGAAGCTAGGCTGTGC 60.179 55.000 0.00 1.10 39.62 4.57
40 41 1.903877 ATGAAGCTAGGCTGTGCGGT 61.904 55.000 0.00 0.00 39.62 5.68
41 42 2.046892 AAGCTAGGCTGTGCGGTG 60.047 61.111 0.00 0.00 39.62 4.94
74 75 3.823304 GGCTTGAGTTGGTTGAGATCTTT 59.177 43.478 0.00 0.00 0.00 2.52
75 76 4.320788 GGCTTGAGTTGGTTGAGATCTTTG 60.321 45.833 0.00 0.00 0.00 2.77
82 83 1.873591 GGTTGAGATCTTTGCACACGT 59.126 47.619 0.00 0.00 0.00 4.49
92 93 0.107410 TTGCACACGTCCCAGAGTTT 60.107 50.000 0.00 0.00 0.00 2.66
107 108 4.445735 CCAGAGTTTGAACCTTCTTGGGTA 60.446 45.833 0.00 0.00 38.87 3.69
111 112 2.107950 TGAACCTTCTTGGGTATGCG 57.892 50.000 0.00 0.00 38.87 4.73
139 140 4.222588 CCTGAATCTGACAACCTTCTCTCT 59.777 45.833 0.00 0.00 0.00 3.10
147 148 1.893919 AACCTTCTCTCTCAGGCGGC 61.894 60.000 0.00 0.00 32.79 6.53
157 158 0.107703 CTCAGGCGGCTTATGAACCA 60.108 55.000 9.66 0.00 0.00 3.67
162 163 1.663695 GCGGCTTATGAACCAGCTTA 58.336 50.000 0.00 0.00 36.20 3.09
174 175 0.663153 CCAGCTTAAGGCCGCAATAC 59.337 55.000 4.29 0.00 43.05 1.89
207 208 2.139917 GCTGGACGTCATTAACACACA 58.860 47.619 18.91 1.46 0.00 3.72
210 211 1.458064 GGACGTCATTAACACACACCG 59.542 52.381 18.91 0.00 0.00 4.94
211 212 2.396601 GACGTCATTAACACACACCGA 58.603 47.619 11.55 0.00 0.00 4.69
261 262 1.017387 CTCCGGGTTAGCTTCAATGC 58.983 55.000 0.00 0.00 0.00 3.56
277 278 1.488705 ATGCCCCGTTCTGAGACCAA 61.489 55.000 0.00 0.00 0.00 3.67
307 308 1.001378 CAGTTTACCTGCAAGCACACC 60.001 52.381 0.00 0.00 33.59 4.16
318 319 2.681706 CAAGCACACCAAAAACACACA 58.318 42.857 0.00 0.00 0.00 3.72
319 320 2.362169 AGCACACCAAAAACACACAC 57.638 45.000 0.00 0.00 0.00 3.82
321 322 1.401670 GCACACCAAAAACACACACGA 60.402 47.619 0.00 0.00 0.00 4.35
325 326 0.727970 CCAAAAACACACACGACCGA 59.272 50.000 0.00 0.00 0.00 4.69
329 330 1.003851 AAACACACACGACCGAGTTG 58.996 50.000 0.00 0.00 0.00 3.16
333 334 1.299850 CACACGACCGAGTTGAGCA 60.300 57.895 0.00 0.00 0.00 4.26
334 335 0.667487 CACACGACCGAGTTGAGCAT 60.667 55.000 0.00 0.00 0.00 3.79
374 375 8.296713 CGGAGATTATCAAAAGTTTCCTTCAAA 58.703 33.333 0.00 0.00 0.00 2.69
386 387 8.697507 AAGTTTCCTTCAAATCATCAAGTAGT 57.302 30.769 0.00 0.00 0.00 2.73
412 413 1.012486 GTCGAAGGTGCCGGTAACAG 61.012 60.000 11.20 0.39 0.00 3.16
426 427 3.181475 CGGTAACAGAGATGCCACATACT 60.181 47.826 0.00 0.00 0.00 2.12
427 428 4.680708 CGGTAACAGAGATGCCACATACTT 60.681 45.833 0.00 0.00 0.00 2.24
456 457 4.218200 TGGTGATGTGGCAAAGAGTTAATG 59.782 41.667 0.00 0.00 0.00 1.90
461 462 5.947228 TGTGGCAAAGAGTTAATGAGAAG 57.053 39.130 0.00 0.00 0.00 2.85
513 514 3.811497 TCATCAGATAGCGCTTTCCAATG 59.189 43.478 18.68 21.55 0.00 2.82
518 519 2.634982 TAGCGCTTTCCAATGCAAAG 57.365 45.000 18.68 0.00 34.47 2.77
520 521 0.785979 GCGCTTTCCAATGCAAAGTG 59.214 50.000 5.88 5.88 42.06 3.16
527 528 5.105997 GCTTTCCAATGCAAAGTGAGTCTAT 60.106 40.000 0.00 0.00 33.96 1.98
568 569 9.444668 AGACATCTATATTACCATGCCTATGAT 57.555 33.333 0.00 0.00 36.36 2.45
702 707 4.081761 CGAGATTGTGTGCGTTTGAATAC 58.918 43.478 0.00 0.00 0.00 1.89
747 752 2.751259 TGACTCAAATGAGCAATCAGGC 59.249 45.455 10.28 0.00 45.79 4.85
1120 1126 0.744414 CCATTGCTCCGTTGACCGAT 60.744 55.000 0.00 0.00 39.56 4.18
1331 1337 1.814586 CGACCTCTACGAGCGTCCT 60.815 63.158 0.00 0.00 31.20 3.85
1604 1619 2.948889 TCCTCTTCCTCATCTGGGAA 57.051 50.000 0.00 0.00 40.14 3.97
1871 1886 3.338249 CGCCTTCTCCAAGATTCTCAAA 58.662 45.455 0.00 0.00 0.00 2.69
1988 2003 3.069980 GATCCGCCTGCTCGTGTCT 62.070 63.158 0.00 0.00 0.00 3.41
2096 2111 1.631072 CAGCGGCAAATACTCGTCG 59.369 57.895 1.45 0.00 0.00 5.12
2118 2133 2.183478 TCAGGACACATTTGATGCGT 57.817 45.000 0.00 0.00 0.00 5.24
2124 2139 1.337728 ACACATTTGATGCGTCGGAGA 60.338 47.619 0.58 0.00 0.00 3.71
2130 2145 1.080093 GATGCGTCGGAGAACACCA 60.080 57.895 0.00 0.00 39.69 4.17
2132 2147 2.737376 GCGTCGGAGAACACCACC 60.737 66.667 0.00 0.00 39.69 4.61
2133 2148 2.732016 CGTCGGAGAACACCACCA 59.268 61.111 0.00 0.00 39.69 4.17
2134 2149 1.663702 CGTCGGAGAACACCACCAC 60.664 63.158 0.00 0.00 39.69 4.16
2135 2150 1.301479 GTCGGAGAACACCACCACC 60.301 63.158 0.00 0.00 39.69 4.61
2136 2151 1.762858 TCGGAGAACACCACCACCA 60.763 57.895 0.00 0.00 0.00 4.17
2145 2160 2.123939 CCACCACCACCAACAGCA 60.124 61.111 0.00 0.00 0.00 4.41
2317 2362 4.838486 GACGAGCACGCGAGGGAG 62.838 72.222 15.93 3.32 43.96 4.30
2471 2516 4.803908 CTGGAGAAAGGCGCCCCC 62.804 72.222 26.15 16.98 35.27 5.40
2489 2534 1.007336 CCGACGTGCAGTACAACTCC 61.007 60.000 0.00 0.00 0.00 3.85
2532 2577 1.301244 CGTGTGGCTGAGCAGAACT 60.301 57.895 6.82 0.00 0.00 3.01
2567 2612 3.033764 GCGTTCAAGCCGACGTCA 61.034 61.111 17.16 0.00 41.10 4.35
2648 2693 1.704070 GATCTCCTGATCCCCTGCATT 59.296 52.381 0.00 0.00 42.35 3.56
2657 2702 1.038681 TCCCCTGCATTACGTCGCTA 61.039 55.000 0.00 0.00 0.00 4.26
2789 2834 2.357517 AAGTTCGCCTGCACGGAG 60.358 61.111 6.40 3.42 33.16 4.63
2798 2843 0.108615 CCTGCACGGAGAACTACCTG 60.109 60.000 0.00 0.00 33.16 4.00
3023 3068 2.881074 CAGGACACGTTGATCGAGAAT 58.119 47.619 0.00 0.00 42.86 2.40
3450 3495 5.826208 ACTTGTAACTTGTACCTTTCTTGGG 59.174 40.000 0.00 0.00 0.00 4.12
3608 3658 6.205464 CCATTACGAGTATCTCATTTGCCAAT 59.795 38.462 0.00 0.00 0.00 3.16
3619 3669 5.356190 TCTCATTTGCCAATCTGATCAACTC 59.644 40.000 0.00 0.00 0.00 3.01
3626 3676 6.761312 TGCCAATCTGATCAACTCAAAAATT 58.239 32.000 0.00 0.00 32.14 1.82
3756 3836 9.730420 ACAACGCCAAGCTTTATAAATTATTAG 57.270 29.630 0.00 0.00 0.00 1.73
3780 3860 5.022282 GCCACAACAATAAGGCCAATTAT 57.978 39.130 5.01 0.00 41.25 1.28
3785 3865 7.221838 CCACAACAATAAGGCCAATTATTTACG 59.778 37.037 5.01 0.00 33.98 3.18
3861 3941 5.385509 GAGCATCTCTAATAGACAGACCC 57.614 47.826 0.00 0.00 36.93 4.46
3869 3949 2.273538 ATAGACAGACCCTATCGCGT 57.726 50.000 5.77 0.00 0.00 6.01
3874 3954 1.379443 AGACCCTATCGCGTGGACA 60.379 57.895 5.77 0.00 0.00 4.02
3890 3970 5.019498 CGTGGACACTTAAAATCGTTATGC 58.981 41.667 0.56 0.00 0.00 3.14
3896 3976 0.938713 TAAAATCGTTATGCGGGCCG 59.061 50.000 24.35 24.35 41.72 6.13
3902 3982 1.363145 CGTTATGCGGGCCGAGAAAA 61.363 55.000 33.44 14.64 36.85 2.29
3903 3983 0.806241 GTTATGCGGGCCGAGAAAAA 59.194 50.000 33.44 12.71 0.00 1.94
3904 3984 0.806241 TTATGCGGGCCGAGAAAAAC 59.194 50.000 33.44 10.67 0.00 2.43
3917 3997 4.201940 CCGAGAAAAACGTGTTTTAAGGGT 60.202 41.667 4.94 0.00 41.45 4.34
3924 4004 7.908827 AAAACGTGTTTTAAGGGTCAATTTT 57.091 28.000 8.86 0.00 40.61 1.82
3930 4010 6.645003 GTGTTTTAAGGGTCAATTTTAGCTGG 59.355 38.462 0.00 0.00 0.00 4.85
3934 4014 0.824109 GGTCAATTTTAGCTGGGGCC 59.176 55.000 0.00 0.00 39.73 5.80
3935 4015 0.455815 GTCAATTTTAGCTGGGGCCG 59.544 55.000 0.00 0.00 39.73 6.13
3940 4020 0.608035 TTTTAGCTGGGGCCGAACAG 60.608 55.000 14.37 14.37 39.73 3.16
3942 4022 1.271840 TTAGCTGGGGCCGAACAGAT 61.272 55.000 20.81 17.66 39.73 2.90
3943 4023 1.271840 TAGCTGGGGCCGAACAGATT 61.272 55.000 20.81 11.99 39.73 2.40
3946 4026 2.196997 CTGGGGCCGAACAGATTCCA 62.197 60.000 13.68 3.42 36.86 3.53
3957 4037 6.204688 GCCGAACAGATTCCATATAATCAACA 59.795 38.462 1.95 0.00 38.16 3.33
3959 4039 7.283633 CGAACAGATTCCATATAATCAACACG 58.716 38.462 1.95 0.00 38.16 4.49
3997 4077 4.806892 TCTAAATATACCCACCACCTCGA 58.193 43.478 0.00 0.00 0.00 4.04
4007 4087 2.408241 CCACCTCGACTCCCTCGAC 61.408 68.421 0.00 0.00 46.75 4.20
4038 4118 2.190578 CGCCACCAATCCTCCCTC 59.809 66.667 0.00 0.00 0.00 4.30
4072 4152 3.432588 ACCGTGCCTCTCTCGACG 61.433 66.667 0.00 0.00 33.89 5.12
4073 4153 3.432588 CCGTGCCTCTCTCGACGT 61.433 66.667 0.00 0.00 33.89 4.34
4074 4154 2.202362 CGTGCCTCTCTCGACGTG 60.202 66.667 0.00 0.00 33.89 4.49
4075 4155 2.505118 GTGCCTCTCTCGACGTGC 60.505 66.667 0.00 0.00 0.00 5.34
4076 4156 3.749064 TGCCTCTCTCGACGTGCC 61.749 66.667 0.00 0.00 0.00 5.01
4077 4157 3.444805 GCCTCTCTCGACGTGCCT 61.445 66.667 0.00 0.00 0.00 4.75
4078 4158 2.795297 CCTCTCTCGACGTGCCTC 59.205 66.667 0.00 0.00 0.00 4.70
4079 4159 1.747367 CCTCTCTCGACGTGCCTCT 60.747 63.158 0.00 0.00 0.00 3.69
4080 4160 1.427419 CTCTCTCGACGTGCCTCTG 59.573 63.158 0.00 0.00 0.00 3.35
4081 4161 1.302383 CTCTCTCGACGTGCCTCTGT 61.302 60.000 0.00 0.00 0.00 3.41
4082 4162 1.135731 CTCTCGACGTGCCTCTGTC 59.864 63.158 0.00 0.00 0.00 3.51
4086 4166 4.057428 GACGTGCCTCTGTCGCCT 62.057 66.667 0.00 0.00 0.00 5.52
4087 4167 3.973267 GACGTGCCTCTGTCGCCTC 62.973 68.421 0.00 0.00 0.00 4.70
4088 4168 4.803426 CGTGCCTCTGTCGCCTCC 62.803 72.222 0.00 0.00 0.00 4.30
4089 4169 3.695606 GTGCCTCTGTCGCCTCCA 61.696 66.667 0.00 0.00 0.00 3.86
4090 4170 2.685017 TGCCTCTGTCGCCTCCAT 60.685 61.111 0.00 0.00 0.00 3.41
4091 4171 2.202987 GCCTCTGTCGCCTCCATG 60.203 66.667 0.00 0.00 0.00 3.66
4092 4172 2.202987 CCTCTGTCGCCTCCATGC 60.203 66.667 0.00 0.00 0.00 4.06
4100 4180 3.425422 GCCTCCATGCGTCAATCC 58.575 61.111 0.00 0.00 0.00 3.01
4101 4181 1.451927 GCCTCCATGCGTCAATCCA 60.452 57.895 0.00 0.00 0.00 3.41
4102 4182 1.031571 GCCTCCATGCGTCAATCCAA 61.032 55.000 0.00 0.00 0.00 3.53
4103 4183 0.734889 CCTCCATGCGTCAATCCAAC 59.265 55.000 0.00 0.00 0.00 3.77
4104 4184 0.734889 CTCCATGCGTCAATCCAACC 59.265 55.000 0.00 0.00 0.00 3.77
4105 4185 0.037447 TCCATGCGTCAATCCAACCA 59.963 50.000 0.00 0.00 0.00 3.67
4106 4186 0.171007 CCATGCGTCAATCCAACCAC 59.829 55.000 0.00 0.00 0.00 4.16
4107 4187 1.167851 CATGCGTCAATCCAACCACT 58.832 50.000 0.00 0.00 0.00 4.00
4108 4188 1.135603 CATGCGTCAATCCAACCACTG 60.136 52.381 0.00 0.00 0.00 3.66
4109 4189 1.210155 GCGTCAATCCAACCACTGC 59.790 57.895 0.00 0.00 0.00 4.40
4110 4190 1.875963 CGTCAATCCAACCACTGCC 59.124 57.895 0.00 0.00 0.00 4.85
4111 4191 1.875963 GTCAATCCAACCACTGCCG 59.124 57.895 0.00 0.00 0.00 5.69
4112 4192 1.971167 TCAATCCAACCACTGCCGC 60.971 57.895 0.00 0.00 0.00 6.53
4113 4193 2.676471 AATCCAACCACTGCCGCC 60.676 61.111 0.00 0.00 0.00 6.13
4114 4194 4.740822 ATCCAACCACTGCCGCCC 62.741 66.667 0.00 0.00 0.00 6.13
4117 4197 4.974721 CAACCACTGCCGCCCCTT 62.975 66.667 0.00 0.00 0.00 3.95
4118 4198 4.660938 AACCACTGCCGCCCCTTC 62.661 66.667 0.00 0.00 0.00 3.46
4138 4218 3.319198 TCCGCTGGACTGGGGTTC 61.319 66.667 11.09 0.00 40.43 3.62
4139 4219 4.410400 CCGCTGGACTGGGGTTCC 62.410 72.222 4.46 0.00 35.60 3.62
4140 4220 3.636231 CGCTGGACTGGGGTTCCA 61.636 66.667 0.00 0.00 41.58 3.53
4141 4221 2.034221 GCTGGACTGGGGTTCCAC 59.966 66.667 0.00 0.00 38.32 4.02
4142 4222 2.347490 CTGGACTGGGGTTCCACG 59.653 66.667 0.00 0.00 38.32 4.94
4143 4223 3.901797 CTGGACTGGGGTTCCACGC 62.902 68.421 0.00 0.00 38.32 5.34
4173 4253 3.673484 CCCGCACCACCAGCAAAG 61.673 66.667 0.00 0.00 0.00 2.77
4174 4254 4.347453 CCGCACCACCAGCAAAGC 62.347 66.667 0.00 0.00 0.00 3.51
4175 4255 4.347453 CGCACCACCAGCAAAGCC 62.347 66.667 0.00 0.00 0.00 4.35
4176 4256 3.225798 GCACCACCAGCAAAGCCA 61.226 61.111 0.00 0.00 0.00 4.75
4177 4257 2.730094 CACCACCAGCAAAGCCAC 59.270 61.111 0.00 0.00 0.00 5.01
4178 4258 2.521708 ACCACCAGCAAAGCCACC 60.522 61.111 0.00 0.00 0.00 4.61
4179 4259 3.673484 CCACCAGCAAAGCCACCG 61.673 66.667 0.00 0.00 0.00 4.94
4180 4260 2.906897 CACCAGCAAAGCCACCGT 60.907 61.111 0.00 0.00 0.00 4.83
4181 4261 2.594592 ACCAGCAAAGCCACCGTC 60.595 61.111 0.00 0.00 0.00 4.79
4182 4262 2.594303 CCAGCAAAGCCACCGTCA 60.594 61.111 0.00 0.00 0.00 4.35
4183 4263 2.192861 CCAGCAAAGCCACCGTCAA 61.193 57.895 0.00 0.00 0.00 3.18
4184 4264 1.008538 CAGCAAAGCCACCGTCAAC 60.009 57.895 0.00 0.00 0.00 3.18
4185 4265 1.152963 AGCAAAGCCACCGTCAACT 60.153 52.632 0.00 0.00 0.00 3.16
4186 4266 1.008538 GCAAAGCCACCGTCAACTG 60.009 57.895 0.00 0.00 0.00 3.16
4187 4267 1.008538 CAAAGCCACCGTCAACTGC 60.009 57.895 0.00 0.00 0.00 4.40
4188 4268 1.453015 AAAGCCACCGTCAACTGCA 60.453 52.632 0.00 0.00 0.00 4.41
4189 4269 1.034838 AAAGCCACCGTCAACTGCAA 61.035 50.000 0.00 0.00 0.00 4.08
4190 4270 0.823356 AAGCCACCGTCAACTGCAAT 60.823 50.000 0.00 0.00 0.00 3.56
4191 4271 1.210155 GCCACCGTCAACTGCAATC 59.790 57.895 0.00 0.00 0.00 2.67
4192 4272 1.497278 CCACCGTCAACTGCAATCG 59.503 57.895 0.00 0.00 0.00 3.34
4193 4273 1.497278 CACCGTCAACTGCAATCGG 59.503 57.895 11.26 11.26 45.53 4.18
4194 4274 2.325082 ACCGTCAACTGCAATCGGC 61.325 57.895 12.29 0.00 44.17 5.54
4203 4283 3.737172 GCAATCGGCACCGCAGTT 61.737 61.111 3.66 0.00 43.97 3.16
4204 4284 2.480555 CAATCGGCACCGCAGTTC 59.519 61.111 3.66 0.00 39.59 3.01
4205 4285 3.118454 AATCGGCACCGCAGTTCG 61.118 61.111 3.66 0.00 39.59 3.95
4212 4292 4.373116 ACCGCAGTTCGCCGTGAT 62.373 61.111 0.00 0.00 37.30 3.06
4213 4293 3.554692 CCGCAGTTCGCCGTGATC 61.555 66.667 0.00 0.00 37.30 2.92
4214 4294 3.554692 CGCAGTTCGCCGTGATCC 61.555 66.667 0.00 0.00 37.30 3.36
4215 4295 2.125512 GCAGTTCGCCGTGATCCT 60.126 61.111 0.00 0.00 32.94 3.24
4216 4296 2.167861 GCAGTTCGCCGTGATCCTC 61.168 63.158 0.00 0.00 32.94 3.71
4217 4297 1.513158 CAGTTCGCCGTGATCCTCT 59.487 57.895 0.00 0.00 0.00 3.69
4218 4298 0.108615 CAGTTCGCCGTGATCCTCTT 60.109 55.000 0.00 0.00 0.00 2.85
4219 4299 0.173708 AGTTCGCCGTGATCCTCTTC 59.826 55.000 0.00 0.00 0.00 2.87
4220 4300 0.806492 GTTCGCCGTGATCCTCTTCC 60.806 60.000 0.00 0.00 0.00 3.46
4221 4301 0.970937 TTCGCCGTGATCCTCTTCCT 60.971 55.000 0.00 0.00 0.00 3.36
4222 4302 1.066587 CGCCGTGATCCTCTTCCTC 59.933 63.158 0.00 0.00 0.00 3.71
4223 4303 1.066587 GCCGTGATCCTCTTCCTCG 59.933 63.158 0.00 0.00 0.00 4.63
4224 4304 1.066587 CCGTGATCCTCTTCCTCGC 59.933 63.158 0.00 0.00 0.00 5.03
4225 4305 1.667154 CCGTGATCCTCTTCCTCGCA 61.667 60.000 0.00 0.00 0.00 5.10
4226 4306 0.248825 CGTGATCCTCTTCCTCGCAG 60.249 60.000 0.00 0.00 0.00 5.18
4227 4307 0.103937 GTGATCCTCTTCCTCGCAGG 59.896 60.000 0.00 0.00 36.46 4.85
4228 4308 1.068921 GATCCTCTTCCTCGCAGGC 59.931 63.158 0.00 0.00 34.61 4.85
4229 4309 2.376228 GATCCTCTTCCTCGCAGGCC 62.376 65.000 0.00 0.00 34.61 5.19
4230 4310 4.168291 CCTCTTCCTCGCAGGCCC 62.168 72.222 0.00 0.00 34.61 5.80
4231 4311 4.168291 CTCTTCCTCGCAGGCCCC 62.168 72.222 0.00 0.00 34.61 5.80
4233 4313 4.033776 CTTCCTCGCAGGCCCCAA 62.034 66.667 0.00 0.00 34.61 4.12
4234 4314 4.344865 TTCCTCGCAGGCCCCAAC 62.345 66.667 0.00 0.00 34.61 3.77
4266 4346 3.554692 CGCCACGGAGATTGACGC 61.555 66.667 0.00 0.00 0.00 5.19
4267 4347 3.554692 GCCACGGAGATTGACGCG 61.555 66.667 3.53 3.53 0.00 6.01
4268 4348 3.554692 CCACGGAGATTGACGCGC 61.555 66.667 5.73 0.00 0.00 6.86
4269 4349 2.507102 CACGGAGATTGACGCGCT 60.507 61.111 5.73 0.00 0.00 5.92
4270 4350 2.202623 ACGGAGATTGACGCGCTC 60.203 61.111 5.73 3.72 0.00 5.03
4271 4351 3.315521 CGGAGATTGACGCGCTCG 61.316 66.667 5.73 0.00 42.43 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.073216 AGCTTCATCGAGTTCGCGTG 61.073 55.000 5.77 0.00 39.60 5.34
22 23 2.265739 CCGCACAGCCTAGCTTCA 59.734 61.111 0.00 0.00 36.40 3.02
74 75 0.813610 CAAACTCTGGGACGTGTGCA 60.814 55.000 0.00 0.00 0.00 4.57
75 76 0.531974 TCAAACTCTGGGACGTGTGC 60.532 55.000 0.00 0.00 0.00 4.57
82 83 3.435026 CCAAGAAGGTTCAAACTCTGGGA 60.435 47.826 1.10 0.00 29.82 4.37
92 93 1.339631 CCGCATACCCAAGAAGGTTCA 60.340 52.381 0.00 0.00 41.58 3.18
107 108 1.147824 CAGATTCAGGGCTCCGCAT 59.852 57.895 0.00 0.00 0.00 4.73
111 112 1.680249 GGTTGTCAGATTCAGGGCTCC 60.680 57.143 0.00 0.00 0.00 4.70
124 125 1.620819 GCCTGAGAGAGAAGGTTGTCA 59.379 52.381 0.00 0.00 35.86 3.58
139 140 0.107703 CTGGTTCATAAGCCGCCTGA 60.108 55.000 0.00 0.00 0.00 3.86
147 148 2.614057 CGGCCTTAAGCTGGTTCATAAG 59.386 50.000 0.00 0.00 44.85 1.73
157 158 0.177141 TCGTATTGCGGCCTTAAGCT 59.823 50.000 0.00 0.00 43.05 3.74
207 208 3.228453 TCACTTCACTTCCTAAGTCGGT 58.772 45.455 0.00 0.00 40.46 4.69
210 211 3.935828 GCCATCACTTCACTTCCTAAGTC 59.064 47.826 0.00 0.00 40.46 3.01
211 212 3.307762 GGCCATCACTTCACTTCCTAAGT 60.308 47.826 0.00 0.00 44.06 2.24
261 262 1.975660 TTTTTGGTCTCAGAACGGGG 58.024 50.000 0.00 0.00 0.00 5.73
289 290 1.028905 TGGTGTGCTTGCAGGTAAAC 58.971 50.000 0.00 0.00 0.00 2.01
307 308 1.395608 ACTCGGTCGTGTGTGTTTTTG 59.604 47.619 0.00 0.00 0.00 2.44
318 319 0.532573 ATGATGCTCAACTCGGTCGT 59.467 50.000 0.00 0.00 0.00 4.34
319 320 1.202348 AGATGATGCTCAACTCGGTCG 60.202 52.381 0.00 0.00 0.00 4.79
321 322 2.027745 ACAAGATGATGCTCAACTCGGT 60.028 45.455 0.00 0.00 27.51 4.69
325 326 4.383552 GGGTCTACAAGATGATGCTCAACT 60.384 45.833 0.00 0.00 30.32 3.16
329 330 2.546795 CCGGGTCTACAAGATGATGCTC 60.547 54.545 0.00 0.00 0.00 4.26
333 334 3.314307 TCTCCGGGTCTACAAGATGAT 57.686 47.619 0.00 0.00 0.00 2.45
334 335 2.820728 TCTCCGGGTCTACAAGATGA 57.179 50.000 0.00 0.00 0.00 2.92
386 387 2.434185 GCACCTTCGACGCCATCA 60.434 61.111 0.00 0.00 0.00 3.07
412 413 6.974622 CACCATTTTTAAGTATGTGGCATCTC 59.025 38.462 0.00 0.00 0.00 2.75
426 427 6.166984 TCTTTGCCACATCACCATTTTTAA 57.833 33.333 0.00 0.00 0.00 1.52
427 428 5.304101 ACTCTTTGCCACATCACCATTTTTA 59.696 36.000 0.00 0.00 0.00 1.52
487 488 5.798132 TGGAAAGCGCTATCTGATGATAAT 58.202 37.500 12.05 0.00 35.04 1.28
497 498 2.849880 TTGCATTGGAAAGCGCTATC 57.150 45.000 12.05 3.70 0.00 2.08
538 539 8.155620 AGGCATGGTAATATAGATGTCTTCAT 57.844 34.615 0.00 0.00 36.95 2.57
573 574 7.821595 TGCACATGTTACTAGTGTATGTTAC 57.178 36.000 5.39 8.23 35.75 2.50
625 626 8.122481 TCCATTCCATATTAGGCTAGTCATAGA 58.878 37.037 0.00 0.00 0.00 1.98
702 707 4.946157 AGAATTTTCAGTCCACTATGCAGG 59.054 41.667 0.00 0.00 0.00 4.85
1063 1069 0.034337 TTTCTTGGTCTCCGGTTCCG 59.966 55.000 0.00 4.08 0.00 4.30
1120 1126 2.041922 CCCCCTCCTGATCACCGA 60.042 66.667 0.00 0.00 0.00 4.69
1460 1466 0.687354 AGTTGTCGAGCTGGTTGGAT 59.313 50.000 0.00 0.00 0.00 3.41
1604 1619 1.313091 TGTAGAGCACGGCGATCTGT 61.313 55.000 16.62 10.89 0.00 3.41
1691 1706 0.037882 CGATGATGAGCCTGCCGTAT 60.038 55.000 0.00 0.00 0.00 3.06
1811 1826 0.101399 CCATTAGCTCGACGCACTCT 59.899 55.000 9.09 0.00 42.61 3.24
1871 1886 3.706373 ACCTTCATGGGCGCGTCT 61.706 61.111 11.94 0.00 41.11 4.18
1922 1937 4.548513 TTGGGGTGGTTGGTGGCC 62.549 66.667 0.00 0.00 0.00 5.36
2057 2072 2.862541 CCCTTCTTGTCCATGACAACA 58.137 47.619 5.59 0.00 45.88 3.33
2118 2133 1.762858 TGGTGGTGGTGTTCTCCGA 60.763 57.895 0.00 0.00 0.00 4.55
2124 2139 0.682855 CTGTTGGTGGTGGTGGTGTT 60.683 55.000 0.00 0.00 0.00 3.32
2130 2145 0.823356 GACATGCTGTTGGTGGTGGT 60.823 55.000 0.00 0.00 0.00 4.16
2132 2147 1.575922 CGACATGCTGTTGGTGGTG 59.424 57.895 0.00 0.00 0.00 4.17
2133 2148 1.600636 CCGACATGCTGTTGGTGGT 60.601 57.895 12.16 0.00 45.03 4.16
2134 2149 3.266964 CCGACATGCTGTTGGTGG 58.733 61.111 12.16 0.00 45.03 4.61
2210 2255 3.052082 CCACTTGAGCTGGTGCCG 61.052 66.667 0.00 0.00 40.80 5.69
2317 2362 2.033174 GTCTCTTCGTCCTCGTAATCCC 59.967 54.545 0.00 0.00 38.33 3.85
2318 2363 2.033174 GGTCTCTTCGTCCTCGTAATCC 59.967 54.545 0.00 0.00 38.33 3.01
2321 2366 2.189594 TGGTCTCTTCGTCCTCGTAA 57.810 50.000 0.00 0.00 38.33 3.18
2471 2516 1.334992 CGGAGTTGTACTGCACGTCG 61.335 60.000 0.00 0.00 36.23 5.12
2522 2567 1.251527 GGAGGTCCGAGTTCTGCTCA 61.252 60.000 0.00 0.00 44.33 4.26
2648 2693 2.439701 AGGCAGCCTAGCGACGTA 60.440 61.111 14.18 0.00 34.64 3.57
2657 2702 2.659610 GTTCTCGACAGGCAGCCT 59.340 61.111 8.70 8.70 0.00 4.58
2789 2834 0.669625 GGTCCACGTGCAGGTAGTTC 60.670 60.000 12.40 3.48 0.00 3.01
2903 2948 3.178592 TGCGCGATGTAGCACACG 61.179 61.111 12.10 0.00 38.59 4.49
2991 3036 1.302431 TGTCCTGCACCATGAACGG 60.302 57.895 0.00 0.00 0.00 4.44
2995 3040 0.884259 CAACGTGTCCTGCACCATGA 60.884 55.000 0.00 0.00 44.97 3.07
3045 3090 1.001406 GGATTGGTAGAGCTCCATCCG 59.999 57.143 10.93 0.00 34.75 4.18
3450 3495 8.157476 TCAGAATAAGAAGAAATGGCTATACCC 58.843 37.037 0.00 0.00 37.83 3.69
3626 3676 9.252635 ACATAGATATGCAGAGATGATTCAGTA 57.747 33.333 7.44 0.00 37.19 2.74
3756 3836 1.544724 TGGCCTTATTGTTGTGGCTC 58.455 50.000 3.32 0.00 44.36 4.70
3780 3860 7.011576 TGTTTTGTAATCAGTGAGCTTCGTAAA 59.988 33.333 0.00 0.00 0.00 2.01
3785 3865 6.142958 GCTTTGTTTTGTAATCAGTGAGCTTC 59.857 38.462 0.00 0.00 0.00 3.86
3860 3940 2.572191 TTAAGTGTCCACGCGATAGG 57.428 50.000 15.93 12.21 36.20 2.57
3861 3941 4.317139 CGATTTTAAGTGTCCACGCGATAG 60.317 45.833 15.93 1.33 36.20 2.08
3890 3970 1.778027 AACACGTTTTTCTCGGCCCG 61.778 55.000 0.00 0.00 0.00 6.13
3896 3976 5.882553 TGACCCTTAAAACACGTTTTTCTC 58.117 37.500 12.73 3.07 42.22 2.87
3902 3982 6.698329 GCTAAAATTGACCCTTAAAACACGTT 59.302 34.615 0.00 0.00 0.00 3.99
3903 3983 6.040054 AGCTAAAATTGACCCTTAAAACACGT 59.960 34.615 0.00 0.00 0.00 4.49
3904 3984 6.362283 CAGCTAAAATTGACCCTTAAAACACG 59.638 38.462 0.00 0.00 0.00 4.49
3917 3997 0.329931 TCGGCCCCAGCTAAAATTGA 59.670 50.000 0.00 0.00 39.73 2.57
3924 4004 1.271840 AATCTGTTCGGCCCCAGCTA 61.272 55.000 0.00 0.00 39.73 3.32
3930 4010 2.568623 ATATGGAATCTGTTCGGCCC 57.431 50.000 0.00 0.00 35.10 5.80
3934 4014 7.042725 ACGTGTTGATTATATGGAATCTGTTCG 60.043 37.037 0.00 0.00 36.86 3.95
3935 4015 8.142994 ACGTGTTGATTATATGGAATCTGTTC 57.857 34.615 0.00 0.00 36.86 3.18
3969 4049 8.437274 AGGTGGTGGGTATATTTAGAGAATAG 57.563 38.462 0.00 0.00 0.00 1.73
3976 4056 4.587684 AGTCGAGGTGGTGGGTATATTTAG 59.412 45.833 0.00 0.00 0.00 1.85
4020 4100 3.406595 GAGGGAGGATTGGTGGCGG 62.407 68.421 0.00 0.00 0.00 6.13
4072 4152 3.023949 ATGGAGGCGACAGAGGCAC 62.024 63.158 0.00 0.00 39.37 5.01
4073 4153 2.685017 ATGGAGGCGACAGAGGCA 60.685 61.111 0.00 0.00 39.37 4.75
4074 4154 2.202987 CATGGAGGCGACAGAGGC 60.203 66.667 0.00 0.00 0.00 4.70
4075 4155 2.202987 GCATGGAGGCGACAGAGG 60.203 66.667 0.00 0.00 0.00 3.69
4083 4163 1.031571 TTGGATTGACGCATGGAGGC 61.032 55.000 0.00 0.00 0.00 4.70
4084 4164 0.734889 GTTGGATTGACGCATGGAGG 59.265 55.000 0.00 0.00 0.00 4.30
4085 4165 0.734889 GGTTGGATTGACGCATGGAG 59.265 55.000 0.00 0.00 0.00 3.86
4086 4166 0.037447 TGGTTGGATTGACGCATGGA 59.963 50.000 0.00 0.00 0.00 3.41
4087 4167 0.171007 GTGGTTGGATTGACGCATGG 59.829 55.000 0.00 0.00 0.00 3.66
4088 4168 1.135603 CAGTGGTTGGATTGACGCATG 60.136 52.381 0.00 0.00 0.00 4.06
4089 4169 1.167851 CAGTGGTTGGATTGACGCAT 58.832 50.000 0.00 0.00 0.00 4.73
4090 4170 1.514678 GCAGTGGTTGGATTGACGCA 61.515 55.000 0.00 0.00 0.00 5.24
4091 4171 1.210155 GCAGTGGTTGGATTGACGC 59.790 57.895 0.00 0.00 0.00 5.19
4092 4172 1.875963 GGCAGTGGTTGGATTGACG 59.124 57.895 0.00 0.00 0.00 4.35
4093 4173 1.875963 CGGCAGTGGTTGGATTGAC 59.124 57.895 0.00 0.00 0.00 3.18
4094 4174 1.971167 GCGGCAGTGGTTGGATTGA 60.971 57.895 0.00 0.00 0.00 2.57
4095 4175 2.568090 GCGGCAGTGGTTGGATTG 59.432 61.111 0.00 0.00 0.00 2.67
4096 4176 2.676471 GGCGGCAGTGGTTGGATT 60.676 61.111 3.07 0.00 0.00 3.01
4097 4177 4.740822 GGGCGGCAGTGGTTGGAT 62.741 66.667 12.47 0.00 0.00 3.41
4100 4180 4.974721 AAGGGGCGGCAGTGGTTG 62.975 66.667 12.47 0.00 0.00 3.77
4101 4181 4.660938 GAAGGGGCGGCAGTGGTT 62.661 66.667 12.47 0.00 0.00 3.67
4113 4193 4.452733 GTCCAGCGGACGGAAGGG 62.453 72.222 11.11 0.00 43.14 3.95
4121 4201 3.319198 GAACCCCAGTCCAGCGGA 61.319 66.667 0.00 0.00 0.00 5.54
4122 4202 4.410400 GGAACCCCAGTCCAGCGG 62.410 72.222 0.00 0.00 0.00 5.52
4123 4203 3.636231 TGGAACCCCAGTCCAGCG 61.636 66.667 0.00 0.00 37.58 5.18
4124 4204 2.034221 GTGGAACCCCAGTCCAGC 59.966 66.667 0.00 0.00 44.55 4.85
4125 4205 2.347490 CGTGGAACCCCAGTCCAG 59.653 66.667 0.00 0.00 44.55 3.86
4126 4206 3.948719 GCGTGGAACCCCAGTCCA 61.949 66.667 0.00 0.00 44.55 4.02
4127 4207 4.717313 GGCGTGGAACCCCAGTCC 62.717 72.222 0.00 0.00 44.55 3.85
4128 4208 4.717313 GGGCGTGGAACCCCAGTC 62.717 72.222 0.00 0.00 44.06 3.51
4156 4236 3.673484 CTTTGCTGGTGGTGCGGG 61.673 66.667 0.00 0.00 0.00 6.13
4157 4237 4.347453 GCTTTGCTGGTGGTGCGG 62.347 66.667 0.00 0.00 0.00 5.69
4158 4238 4.347453 GGCTTTGCTGGTGGTGCG 62.347 66.667 0.00 0.00 0.00 5.34
4159 4239 3.225798 TGGCTTTGCTGGTGGTGC 61.226 61.111 0.00 0.00 0.00 5.01
4160 4240 2.730094 GTGGCTTTGCTGGTGGTG 59.270 61.111 0.00 0.00 0.00 4.17
4161 4241 2.521708 GGTGGCTTTGCTGGTGGT 60.522 61.111 0.00 0.00 0.00 4.16
4162 4242 3.673484 CGGTGGCTTTGCTGGTGG 61.673 66.667 0.00 0.00 0.00 4.61
4163 4243 2.906897 ACGGTGGCTTTGCTGGTG 60.907 61.111 0.00 0.00 0.00 4.17
4164 4244 2.594592 GACGGTGGCTTTGCTGGT 60.595 61.111 0.00 0.00 0.00 4.00
4165 4245 2.192861 TTGACGGTGGCTTTGCTGG 61.193 57.895 0.00 0.00 0.00 4.85
4166 4246 1.008538 GTTGACGGTGGCTTTGCTG 60.009 57.895 0.00 0.00 0.00 4.41
4167 4247 1.152963 AGTTGACGGTGGCTTTGCT 60.153 52.632 0.00 0.00 0.00 3.91
4168 4248 1.008538 CAGTTGACGGTGGCTTTGC 60.009 57.895 0.00 0.00 0.00 3.68
4169 4249 1.008538 GCAGTTGACGGTGGCTTTG 60.009 57.895 0.00 0.00 0.00 2.77
4170 4250 1.034838 TTGCAGTTGACGGTGGCTTT 61.035 50.000 0.00 0.00 0.00 3.51
4171 4251 0.823356 ATTGCAGTTGACGGTGGCTT 60.823 50.000 0.00 0.00 0.00 4.35
4172 4252 1.228245 ATTGCAGTTGACGGTGGCT 60.228 52.632 0.00 0.00 0.00 4.75
4173 4253 1.210155 GATTGCAGTTGACGGTGGC 59.790 57.895 0.00 0.00 0.00 5.01
4174 4254 1.497278 CGATTGCAGTTGACGGTGG 59.503 57.895 0.00 0.00 0.00 4.61
4175 4255 1.497278 CCGATTGCAGTTGACGGTG 59.503 57.895 0.00 0.00 38.97 4.94
4176 4256 2.325082 GCCGATTGCAGTTGACGGT 61.325 57.895 9.13 0.00 44.48 4.83
4177 4257 2.480555 GCCGATTGCAGTTGACGG 59.519 61.111 3.78 3.78 45.26 4.79
4186 4266 3.667429 GAACTGCGGTGCCGATTGC 62.667 63.158 15.45 0.00 42.83 3.56
4187 4267 2.480555 GAACTGCGGTGCCGATTG 59.519 61.111 15.45 5.70 42.83 2.67
4188 4268 3.118454 CGAACTGCGGTGCCGATT 61.118 61.111 15.45 4.95 42.83 3.34
4198 4278 2.125512 AGGATCACGGCGAACTGC 60.126 61.111 16.62 1.96 45.38 4.40
4199 4279 0.108615 AAGAGGATCACGGCGAACTG 60.109 55.000 16.62 0.57 37.82 3.16
4200 4280 0.173708 GAAGAGGATCACGGCGAACT 59.826 55.000 16.62 3.36 37.82 3.01
4201 4281 0.806492 GGAAGAGGATCACGGCGAAC 60.806 60.000 16.62 1.07 37.82 3.95
4202 4282 0.970937 AGGAAGAGGATCACGGCGAA 60.971 55.000 16.62 0.42 37.82 4.70
4203 4283 1.379977 AGGAAGAGGATCACGGCGA 60.380 57.895 16.62 0.00 37.82 5.54
4204 4284 1.066587 GAGGAAGAGGATCACGGCG 59.933 63.158 4.80 4.80 37.82 6.46
4205 4285 1.066587 CGAGGAAGAGGATCACGGC 59.933 63.158 0.00 0.00 37.82 5.68
4206 4286 1.066587 GCGAGGAAGAGGATCACGG 59.933 63.158 0.00 0.00 37.82 4.94
4207 4287 0.248825 CTGCGAGGAAGAGGATCACG 60.249 60.000 0.00 0.00 37.82 4.35
4208 4288 0.103937 CCTGCGAGGAAGAGGATCAC 59.896 60.000 0.00 0.00 37.67 3.06
4209 4289 1.680522 GCCTGCGAGGAAGAGGATCA 61.681 60.000 6.40 0.00 37.67 2.92
4210 4290 1.068921 GCCTGCGAGGAAGAGGATC 59.931 63.158 6.40 0.00 37.67 3.36
4211 4291 2.439104 GGCCTGCGAGGAAGAGGAT 61.439 63.158 0.00 0.00 37.67 3.24
4212 4292 3.077556 GGCCTGCGAGGAAGAGGA 61.078 66.667 0.00 0.00 37.67 3.71
4213 4293 4.168291 GGGCCTGCGAGGAAGAGG 62.168 72.222 0.84 0.00 37.67 3.69
4214 4294 4.168291 GGGGCCTGCGAGGAAGAG 62.168 72.222 0.84 0.00 37.67 2.85
4216 4296 4.033776 TTGGGGCCTGCGAGGAAG 62.034 66.667 0.84 0.00 37.67 3.46
4217 4297 4.344865 GTTGGGGCCTGCGAGGAA 62.345 66.667 0.84 0.00 37.67 3.36
4249 4329 3.554692 GCGTCAATCTCCGTGGCG 61.555 66.667 0.00 0.00 46.58 5.69
4250 4330 3.554692 CGCGTCAATCTCCGTGGC 61.555 66.667 0.00 0.00 0.00 5.01
4251 4331 3.554692 GCGCGTCAATCTCCGTGG 61.555 66.667 8.43 0.00 35.27 4.94
4252 4332 2.507102 AGCGCGTCAATCTCCGTG 60.507 61.111 8.43 0.00 37.62 4.94
4253 4333 2.202623 GAGCGCGTCAATCTCCGT 60.203 61.111 8.43 0.00 0.00 4.69
4254 4334 3.315521 CGAGCGCGTCAATCTCCG 61.316 66.667 8.43 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.