Multiple sequence alignment - TraesCS7B01G170100
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7B01G170100
chr7B
100.000
3280
0
0
1
3280
241579458
241576179
0.000000e+00
6058.0
1
TraesCS7B01G170100
chr7B
79.583
240
28
14
3054
3278
669974333
669974100
5.670000e-33
152.0
2
TraesCS7B01G170100
chr7D
96.500
2686
77
12
1
2679
262353253
262355928
0.000000e+00
4423.0
3
TraesCS7B01G170100
chr7D
95.148
371
15
2
2676
3043
262358036
262358406
1.700000e-162
582.0
4
TraesCS7B01G170100
chr7A
92.942
2777
127
31
1
2764
285424175
285426895
0.000000e+00
3978.0
5
TraesCS7B01G170100
chr7A
91.549
142
11
1
2766
2907
285426999
285427139
9.290000e-46
195.0
6
TraesCS7B01G170100
chr7A
83.708
178
18
8
3051
3222
290923740
290923912
1.220000e-34
158.0
7
TraesCS7B01G170100
chr4A
84.905
1941
172
40
715
2601
5832700
5834573
0.000000e+00
1849.0
8
TraesCS7B01G170100
chr4A
90.728
151
11
3
2905
3052
410364836
410364986
7.180000e-47
198.0
9
TraesCS7B01G170100
chr4D
89.514
391
40
1
966
1355
464178039
464177649
8.180000e-136
494.0
10
TraesCS7B01G170100
chr4D
83.936
249
31
5
2364
2604
464177594
464177347
2.550000e-56
230.0
11
TraesCS7B01G170100
chr4B
82.879
514
49
14
2118
2604
580010882
580010381
3.030000e-115
425.0
12
TraesCS7B01G170100
chr4B
79.498
239
33
12
3051
3278
483504920
483504687
4.380000e-34
156.0
13
TraesCS7B01G170100
chr4B
85.542
83
9
2
2370
2452
580037727
580037648
2.100000e-12
84.2
14
TraesCS7B01G170100
chr1B
94.170
223
13
0
3056
3278
21814665
21814887
1.130000e-89
340.0
15
TraesCS7B01G170100
chr1B
92.982
228
15
1
3051
3278
231347894
231347668
6.780000e-87
331.0
16
TraesCS7B01G170100
chr5B
91.946
149
10
2
2906
3052
13204144
13203996
1.190000e-49
207.0
17
TraesCS7B01G170100
chr5A
91.503
153
10
3
2903
3052
692261428
692261580
1.190000e-49
207.0
18
TraesCS7B01G170100
chr5A
89.542
153
13
3
2903
3052
386169519
386169671
1.200000e-44
191.0
19
TraesCS7B01G170100
chr5A
80.672
238
28
13
3051
3278
432002955
432002726
5.630000e-38
169.0
20
TraesCS7B01G170100
chr2D
90.667
150
13
1
2904
3052
79687754
79687903
7.180000e-47
198.0
21
TraesCS7B01G170100
chr2D
90.728
151
11
2
2905
3052
602714076
602713926
7.180000e-47
198.0
22
TraesCS7B01G170100
chr2B
90.667
150
11
3
2906
3052
426906884
426907033
2.580000e-46
196.0
23
TraesCS7B01G170100
chr1A
90.000
150
13
2
2905
3052
534256567
534256418
3.340000e-45
193.0
24
TraesCS7B01G170100
chr1A
92.453
53
2
1
33
83
448929591
448929643
1.260000e-09
75.0
25
TraesCS7B01G170100
chr3D
80.751
213
25
11
3056
3256
519675229
519675437
5.670000e-33
152.0
26
TraesCS7B01G170100
chr3A
79.149
235
33
14
3056
3278
469050583
469050813
7.330000e-32
148.0
27
TraesCS7B01G170100
chr6D
78.243
239
38
14
3051
3278
374816105
374815870
1.230000e-29
141.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7B01G170100
chr7B
241576179
241579458
3279
True
6058.0
6058
100.0000
1
3280
1
chr7B.!!$R1
3279
1
TraesCS7B01G170100
chr7D
262353253
262358406
5153
False
2502.5
4423
95.8240
1
3043
2
chr7D.!!$F1
3042
2
TraesCS7B01G170100
chr7A
285424175
285427139
2964
False
2086.5
3978
92.2455
1
2907
2
chr7A.!!$F2
2906
3
TraesCS7B01G170100
chr4A
5832700
5834573
1873
False
1849.0
1849
84.9050
715
2601
1
chr4A.!!$F1
1886
4
TraesCS7B01G170100
chr4D
464177347
464178039
692
True
362.0
494
86.7250
966
2604
2
chr4D.!!$R1
1638
5
TraesCS7B01G170100
chr4B
580010381
580010882
501
True
425.0
425
82.8790
2118
2604
1
chr4B.!!$R2
486
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
246
254
0.109226
AGACTCTACGCTGGTTTCGC
60.109
55.0
0.00
0.0
0.00
4.70
F
470
480
0.251165
TACAAAGTTCTGCCAGGGCC
60.251
55.0
8.02
0.0
41.09
5.80
F
615
626
1.104630
AAGGTCTACCGCAGTAGCTC
58.895
55.0
1.96
0.0
44.87
4.09
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1870
1894
0.973632
ACGATCACTACCAGGCACAA
59.026
50.000
0.00
0.00
0.00
3.33
R
1892
1922
2.997897
ACACCTCCGCCTCCTCAC
60.998
66.667
0.00
0.00
0.00
3.51
R
2399
2468
5.700373
TGTCGACATCATCAAGATTTGTTGA
59.300
36.000
15.76
5.36
41.89
3.18
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
21
23
4.489679
AAATTTTGTCAGAAGCTCGACC
57.510
40.909
8.05
0.00
0.00
4.79
126
133
3.603532
ACTCGGATGTAGTACACTCGAA
58.396
45.455
22.00
11.79
36.17
3.71
246
254
0.109226
AGACTCTACGCTGGTTTCGC
60.109
55.000
0.00
0.00
0.00
4.70
252
260
4.090588
CGCTGGTTTCGCCCCCTA
62.091
66.667
0.00
0.00
36.04
3.53
273
281
2.514824
GGCGGACATTGGAGCTCC
60.515
66.667
26.78
26.78
0.00
4.70
284
292
0.832135
TGGAGCTCCAAGGTCTTCGT
60.832
55.000
33.41
0.00
44.35
3.85
303
311
2.288091
CGTAGATAGGAGGACGACGAGA
60.288
54.545
0.00
0.00
37.50
4.04
317
326
3.793144
GAGAAGGCGCCGCACTTG
61.793
66.667
23.20
0.00
0.00
3.16
470
480
0.251165
TACAAAGTTCTGCCAGGGCC
60.251
55.000
8.02
0.00
41.09
5.80
516
527
5.277825
CGCAAGTTTTATTCAACAGTTCCA
58.722
37.500
0.00
0.00
0.00
3.53
544
555
1.202177
CGTTGCCTTGAATTCGATGGG
60.202
52.381
0.04
0.00
0.00
4.00
553
564
4.802051
TTCGATGGGCAGCCAGGC
62.802
66.667
15.19
1.84
43.27
4.85
578
589
2.359900
CATCTTTTCTTAGGCCTGCGT
58.640
47.619
17.99
0.00
0.00
5.24
580
591
3.688694
TCTTTTCTTAGGCCTGCGTTA
57.311
42.857
17.99
0.00
0.00
3.18
615
626
1.104630
AAGGTCTACCGCAGTAGCTC
58.895
55.000
1.96
0.00
44.87
4.09
776
791
4.184629
CCTTCTGATCGTAGGGTTTCTTG
58.815
47.826
0.78
0.00
0.00
3.02
1089
1110
2.417787
CCAGATGTTCGAGATGCTCACA
60.418
50.000
0.00
0.00
0.00
3.58
1320
1344
2.636412
CCTCGACTTCCTGCCGTCA
61.636
63.158
0.00
0.00
0.00
4.35
1323
1347
2.435059
GACTTCCTGCCGTCAGCC
60.435
66.667
0.00
0.00
42.71
4.85
1442
1466
4.907946
GCGATGCTACTACGCGTA
57.092
55.556
19.40
19.40
42.65
4.42
1863
1887
1.194781
AGAAGCTGGTGACGGTGGAT
61.195
55.000
0.00
0.00
39.64
3.41
1866
1890
2.436646
CTGGTGACGGTGGATGGC
60.437
66.667
0.00
0.00
0.00
4.40
1870
1894
1.302511
GTGACGGTGGATGGCAAGT
60.303
57.895
0.00
0.00
0.00
3.16
1892
1922
1.144057
GCCTGGTAGTGATCGTGGG
59.856
63.158
0.00
0.00
0.00
4.61
2126
2171
4.443063
TCGTTACAATCTCCATTATTCGCG
59.557
41.667
0.00
0.00
0.00
5.87
2130
2175
2.802247
CAATCTCCATTATTCGCGAGCA
59.198
45.455
9.59
0.00
0.00
4.26
2399
2468
6.102897
TCTCTTTTTCGTGAGAGAAGGAAT
57.897
37.500
0.86
0.00
43.90
3.01
2465
2544
6.483307
TCTTTGATTATCACCAATTAGCTCCG
59.517
38.462
0.00
0.00
0.00
4.63
2638
2721
2.512485
TGCTCGGTTCGTTAAACTCA
57.488
45.000
0.00
0.00
38.02
3.41
2653
2736
8.946085
TCGTTAAACTCATGATCATTAAAGCTT
58.054
29.630
5.16
0.00
0.00
3.74
2704
4898
3.987868
TCATTAAGTTGAGTGCTCACGTC
59.012
43.478
0.79
0.00
39.66
4.34
2708
4902
2.231529
AGTTGAGTGCTCACGTCTACT
58.768
47.619
0.79
0.00
39.66
2.57
2804
5100
2.071688
AGCTGAGTAGAACTGCAACG
57.928
50.000
0.00
0.00
35.29
4.10
2944
5241
9.651718
CCTTTTAGTTCGCATATAAGATTTGTC
57.348
33.333
0.00
0.00
0.00
3.18
2959
5256
2.708216
TTGTCTGAAGTCAAGCCACA
57.292
45.000
0.00
0.00
0.00
4.17
2967
5264
5.470098
TCTGAAGTCAAGCCACATAAAGTTC
59.530
40.000
0.00
0.00
0.00
3.01
2975
5272
3.059188
AGCCACATAAAGTTCGACAAACG
60.059
43.478
0.00
0.00
43.02
3.60
3043
5342
6.170675
AGATGCGTCATGACTTAAGTTTTC
57.829
37.500
22.95
8.71
0.00
2.29
3044
5343
5.700832
AGATGCGTCATGACTTAAGTTTTCA
59.299
36.000
22.95
3.68
0.00
2.69
3045
5344
5.940192
TGCGTCATGACTTAAGTTTTCAT
57.060
34.783
22.95
6.03
0.00
2.57
3046
5345
7.549134
AGATGCGTCATGACTTAAGTTTTCATA
59.451
33.333
22.95
0.00
0.00
2.15
3047
5346
7.609760
TGCGTCATGACTTAAGTTTTCATAT
57.390
32.000
22.95
0.00
0.00
1.78
3048
5347
8.039603
TGCGTCATGACTTAAGTTTTCATATT
57.960
30.769
22.95
0.00
0.00
1.28
3049
5348
7.962373
TGCGTCATGACTTAAGTTTTCATATTG
59.038
33.333
22.95
3.02
0.00
1.90
3050
5349
7.962918
GCGTCATGACTTAAGTTTTCATATTGT
59.037
33.333
22.95
0.00
0.00
2.71
3054
5353
9.702726
CATGACTTAAGTTTTCATATTGTACCG
57.297
33.333
10.02
0.00
0.00
4.02
3055
5354
9.661563
ATGACTTAAGTTTTCATATTGTACCGA
57.338
29.630
10.02
0.00
0.00
4.69
3056
5355
9.491675
TGACTTAAGTTTTCATATTGTACCGAA
57.508
29.630
10.02
0.00
0.00
4.30
3063
5362
8.635328
AGTTTTCATATTGTACCGAAAAAGGTT
58.365
29.630
0.00
0.00
43.00
3.50
3064
5363
9.251792
GTTTTCATATTGTACCGAAAAAGGTTT
57.748
29.630
0.00
0.00
43.00
3.27
3065
5364
9.819267
TTTTCATATTGTACCGAAAAAGGTTTT
57.181
25.926
0.00
0.00
43.00
2.43
3066
5365
9.465985
TTTCATATTGTACCGAAAAAGGTTTTC
57.534
29.630
3.82
3.82
43.00
2.29
3068
5367
3.337301
TGTACCGAAAAAGGTTTTCGC
57.663
42.857
23.61
14.26
46.89
4.70
3069
5368
2.033174
TGTACCGAAAAAGGTTTTCGCC
59.967
45.455
23.61
15.90
46.89
5.54
3070
5369
0.386476
ACCGAAAAAGGTTTTCGCCC
59.614
50.000
23.61
0.00
46.89
6.13
3071
5370
0.319211
CCGAAAAAGGTTTTCGCCCC
60.319
55.000
23.61
0.00
46.89
5.80
3072
5371
0.386113
CGAAAAAGGTTTTCGCCCCA
59.614
50.000
19.26
0.00
43.52
4.96
3073
5372
1.860676
GAAAAAGGTTTTCGCCCCAC
58.139
50.000
0.00
0.00
0.00
4.61
3074
5373
1.411246
GAAAAAGGTTTTCGCCCCACT
59.589
47.619
0.00
0.00
0.00
4.00
3075
5374
1.491668
AAAAGGTTTTCGCCCCACTT
58.508
45.000
0.00
0.00
0.00
3.16
3076
5375
1.491668
AAAGGTTTTCGCCCCACTTT
58.508
45.000
0.00
0.00
0.00
2.66
3077
5376
2.368311
AAGGTTTTCGCCCCACTTTA
57.632
45.000
0.00
0.00
0.00
1.85
3078
5377
2.597578
AGGTTTTCGCCCCACTTTAT
57.402
45.000
0.00
0.00
0.00
1.40
3079
5378
3.724732
AGGTTTTCGCCCCACTTTATA
57.275
42.857
0.00
0.00
0.00
0.98
3080
5379
4.036941
AGGTTTTCGCCCCACTTTATAA
57.963
40.909
0.00
0.00
0.00
0.98
3081
5380
4.409187
AGGTTTTCGCCCCACTTTATAAA
58.591
39.130
0.00
0.00
0.00
1.40
3082
5381
5.020795
AGGTTTTCGCCCCACTTTATAAAT
58.979
37.500
0.00
0.00
0.00
1.40
3083
5382
6.189133
AGGTTTTCGCCCCACTTTATAAATA
58.811
36.000
0.00
0.00
0.00
1.40
3084
5383
6.664384
AGGTTTTCGCCCCACTTTATAAATAA
59.336
34.615
0.00
0.00
0.00
1.40
3085
5384
7.178805
AGGTTTTCGCCCCACTTTATAAATAAA
59.821
33.333
0.00
0.00
0.00
1.40
3098
5397
4.632538
ATAAATAAAGCAACCACCGAGC
57.367
40.909
0.00
0.00
0.00
5.03
3099
5398
1.904287
AATAAAGCAACCACCGAGCA
58.096
45.000
0.00
0.00
0.00
4.26
3100
5399
1.165270
ATAAAGCAACCACCGAGCAC
58.835
50.000
0.00
0.00
0.00
4.40
3101
5400
0.179043
TAAAGCAACCACCGAGCACA
60.179
50.000
0.00
0.00
0.00
4.57
3102
5401
1.034838
AAAGCAACCACCGAGCACAA
61.035
50.000
0.00
0.00
0.00
3.33
3103
5402
1.724582
AAGCAACCACCGAGCACAAC
61.725
55.000
0.00
0.00
0.00
3.32
3104
5403
2.631428
CAACCACCGAGCACAACG
59.369
61.111
0.00
0.00
0.00
4.10
3105
5404
2.177580
CAACCACCGAGCACAACGT
61.178
57.895
0.00
0.00
0.00
3.99
3106
5405
1.450669
AACCACCGAGCACAACGTT
60.451
52.632
0.00
0.00
0.00
3.99
3107
5406
1.433837
AACCACCGAGCACAACGTTC
61.434
55.000
0.00
0.00
0.00
3.95
3108
5407
1.885388
CCACCGAGCACAACGTTCA
60.885
57.895
0.00
0.00
0.00
3.18
3109
5408
1.275657
CACCGAGCACAACGTTCAC
59.724
57.895
0.00
0.00
0.00
3.18
3110
5409
1.153529
ACCGAGCACAACGTTCACA
60.154
52.632
0.00
0.00
0.00
3.58
3111
5410
0.741574
ACCGAGCACAACGTTCACAA
60.742
50.000
0.00
0.00
0.00
3.33
3112
5411
0.042188
CCGAGCACAACGTTCACAAG
60.042
55.000
0.00
0.00
0.00
3.16
3113
5412
0.042188
CGAGCACAACGTTCACAAGG
60.042
55.000
0.00
0.00
0.00
3.61
3114
5413
1.014352
GAGCACAACGTTCACAAGGT
58.986
50.000
0.00
0.00
0.00
3.50
3115
5414
2.206750
GAGCACAACGTTCACAAGGTA
58.793
47.619
0.00
0.00
0.00
3.08
3116
5415
2.806244
GAGCACAACGTTCACAAGGTAT
59.194
45.455
0.00
0.00
0.00
2.73
3117
5416
2.806244
AGCACAACGTTCACAAGGTATC
59.194
45.455
0.00
0.00
0.00
2.24
3118
5417
2.546368
GCACAACGTTCACAAGGTATCA
59.454
45.455
0.00
0.00
0.00
2.15
3119
5418
3.188460
GCACAACGTTCACAAGGTATCAT
59.812
43.478
0.00
0.00
0.00
2.45
3120
5419
4.390603
GCACAACGTTCACAAGGTATCATA
59.609
41.667
0.00
0.00
0.00
2.15
3121
5420
5.670341
GCACAACGTTCACAAGGTATCATAC
60.670
44.000
0.00
0.00
0.00
2.39
3122
5421
5.407084
CACAACGTTCACAAGGTATCATACA
59.593
40.000
0.00
0.00
0.00
2.29
3123
5422
5.992829
ACAACGTTCACAAGGTATCATACAA
59.007
36.000
0.00
0.00
0.00
2.41
3124
5423
6.483974
ACAACGTTCACAAGGTATCATACAAA
59.516
34.615
0.00
0.00
0.00
2.83
3125
5424
7.012515
ACAACGTTCACAAGGTATCATACAAAA
59.987
33.333
0.00
0.00
0.00
2.44
3126
5425
6.894828
ACGTTCACAAGGTATCATACAAAAC
58.105
36.000
0.00
0.00
0.00
2.43
3127
5426
6.072893
ACGTTCACAAGGTATCATACAAAACC
60.073
38.462
0.00
0.00
0.00
3.27
3128
5427
6.617879
GTTCACAAGGTATCATACAAAACCC
58.382
40.000
0.00
0.00
32.10
4.11
3129
5428
5.882040
TCACAAGGTATCATACAAAACCCA
58.118
37.500
0.00
0.00
32.10
4.51
3130
5429
5.708230
TCACAAGGTATCATACAAAACCCAC
59.292
40.000
0.00
0.00
32.10
4.61
3131
5430
5.475220
CACAAGGTATCATACAAAACCCACA
59.525
40.000
0.00
0.00
32.10
4.17
3132
5431
6.015856
CACAAGGTATCATACAAAACCCACAA
60.016
38.462
0.00
0.00
32.10
3.33
3133
5432
6.551601
ACAAGGTATCATACAAAACCCACAAA
59.448
34.615
0.00
0.00
32.10
2.83
3134
5433
6.584185
AGGTATCATACAAAACCCACAAAC
57.416
37.500
0.00
0.00
32.10
2.93
3135
5434
6.071984
AGGTATCATACAAAACCCACAAACA
58.928
36.000
0.00
0.00
32.10
2.83
3136
5435
6.015772
AGGTATCATACAAAACCCACAAACAC
60.016
38.462
0.00
0.00
32.10
3.32
3137
5436
5.860941
ATCATACAAAACCCACAAACACA
57.139
34.783
0.00
0.00
0.00
3.72
3138
5437
5.000012
TCATACAAAACCCACAAACACAC
58.000
39.130
0.00
0.00
0.00
3.82
3139
5438
4.462834
TCATACAAAACCCACAAACACACA
59.537
37.500
0.00
0.00
0.00
3.72
3140
5439
3.033368
ACAAAACCCACAAACACACAC
57.967
42.857
0.00
0.00
0.00
3.82
3141
5440
2.365617
ACAAAACCCACAAACACACACA
59.634
40.909
0.00
0.00
0.00
3.72
3142
5441
3.181465
ACAAAACCCACAAACACACACAA
60.181
39.130
0.00
0.00
0.00
3.33
3143
5442
2.734276
AACCCACAAACACACACAAC
57.266
45.000
0.00
0.00
0.00
3.32
3144
5443
0.523966
ACCCACAAACACACACAACG
59.476
50.000
0.00
0.00
0.00
4.10
3145
5444
0.800300
CCCACAAACACACACAACGC
60.800
55.000
0.00
0.00
0.00
4.84
3146
5445
0.170116
CCACAAACACACACAACGCT
59.830
50.000
0.00
0.00
0.00
5.07
3147
5446
1.398739
CCACAAACACACACAACGCTA
59.601
47.619
0.00
0.00
0.00
4.26
3148
5447
2.436670
CACAAACACACACAACGCTAC
58.563
47.619
0.00
0.00
0.00
3.58
3149
5448
1.399089
ACAAACACACACAACGCTACC
59.601
47.619
0.00
0.00
0.00
3.18
3150
5449
0.653636
AAACACACACAACGCTACCG
59.346
50.000
0.00
0.00
41.14
4.02
3151
5450
1.768112
AACACACACAACGCTACCGC
61.768
55.000
0.00
0.00
38.22
5.68
3152
5451
2.107343
ACACACAACGCTACCGCA
59.893
55.556
0.00
0.00
38.22
5.69
3153
5452
1.954146
ACACACAACGCTACCGCAG
60.954
57.895
0.00
0.00
38.22
5.18
3167
5466
4.947147
GCAGGCACCGGTCCAACA
62.947
66.667
20.68
0.00
0.00
3.33
3168
5467
2.978010
CAGGCACCGGTCCAACAC
60.978
66.667
20.68
2.94
0.00
3.32
3169
5468
3.484806
AGGCACCGGTCCAACACA
61.485
61.111
20.68
0.00
0.00
3.72
3170
5469
3.284449
GGCACCGGTCCAACACAC
61.284
66.667
2.59
0.00
0.00
3.82
3171
5470
3.284449
GCACCGGTCCAACACACC
61.284
66.667
2.59
0.00
0.00
4.16
3172
5471
2.593436
CACCGGTCCAACACACCC
60.593
66.667
2.59
0.00
0.00
4.61
3173
5472
2.770904
ACCGGTCCAACACACCCT
60.771
61.111
0.00
0.00
0.00
4.34
3174
5473
2.032071
CCGGTCCAACACACCCTC
59.968
66.667
0.00
0.00
0.00
4.30
3175
5474
2.813726
CCGGTCCAACACACCCTCA
61.814
63.158
0.00
0.00
0.00
3.86
3176
5475
1.597027
CGGTCCAACACACCCTCAC
60.597
63.158
0.00
0.00
0.00
3.51
3177
5476
1.529796
GGTCCAACACACCCTCACA
59.470
57.895
0.00
0.00
0.00
3.58
3178
5477
0.106918
GGTCCAACACACCCTCACAA
60.107
55.000
0.00
0.00
0.00
3.33
3179
5478
1.683629
GGTCCAACACACCCTCACAAA
60.684
52.381
0.00
0.00
0.00
2.83
3180
5479
1.404035
GTCCAACACACCCTCACAAAC
59.596
52.381
0.00
0.00
0.00
2.93
3181
5480
1.004862
TCCAACACACCCTCACAAACA
59.995
47.619
0.00
0.00
0.00
2.83
3182
5481
2.031120
CCAACACACCCTCACAAACAT
58.969
47.619
0.00
0.00
0.00
2.71
3183
5482
3.117851
TCCAACACACCCTCACAAACATA
60.118
43.478
0.00
0.00
0.00
2.29
3184
5483
3.634448
CCAACACACCCTCACAAACATAA
59.366
43.478
0.00
0.00
0.00
1.90
3185
5484
4.261572
CCAACACACCCTCACAAACATAAG
60.262
45.833
0.00
0.00
0.00
1.73
3186
5485
3.486383
ACACACCCTCACAAACATAAGG
58.514
45.455
0.00
0.00
0.00
2.69
3187
5486
3.117663
ACACACCCTCACAAACATAAGGT
60.118
43.478
0.00
0.00
0.00
3.50
3188
5487
3.888930
CACACCCTCACAAACATAAGGTT
59.111
43.478
0.00
0.00
42.98
3.50
3189
5488
4.023193
CACACCCTCACAAACATAAGGTTC
60.023
45.833
0.00
0.00
39.29
3.62
3190
5489
4.141287
CACCCTCACAAACATAAGGTTCA
58.859
43.478
0.00
0.00
39.29
3.18
3191
5490
4.216257
CACCCTCACAAACATAAGGTTCAG
59.784
45.833
0.00
0.00
39.29
3.02
3192
5491
3.191371
CCCTCACAAACATAAGGTTCAGC
59.809
47.826
0.00
0.00
39.29
4.26
3193
5492
4.074970
CCTCACAAACATAAGGTTCAGCT
58.925
43.478
0.00
0.00
39.29
4.24
3194
5493
4.083110
CCTCACAAACATAAGGTTCAGCTG
60.083
45.833
7.63
7.63
39.29
4.24
3195
5494
4.460263
TCACAAACATAAGGTTCAGCTGT
58.540
39.130
14.67
0.00
39.29
4.40
3196
5495
4.275689
TCACAAACATAAGGTTCAGCTGTG
59.724
41.667
14.67
5.09
42.10
3.66
3197
5496
3.569701
ACAAACATAAGGTTCAGCTGTGG
59.430
43.478
14.67
0.00
39.29
4.17
3198
5497
2.496899
ACATAAGGTTCAGCTGTGGG
57.503
50.000
14.67
0.00
0.00
4.61
3199
5498
1.098050
CATAAGGTTCAGCTGTGGGC
58.902
55.000
14.67
2.49
42.19
5.36
3200
5499
0.698238
ATAAGGTTCAGCTGTGGGCA
59.302
50.000
14.67
0.00
44.79
5.36
3201
5500
0.250727
TAAGGTTCAGCTGTGGGCAC
60.251
55.000
14.67
4.12
44.79
5.01
3202
5501
2.203337
GGTTCAGCTGTGGGCACA
60.203
61.111
14.67
0.00
44.79
4.57
3203
5502
1.827789
GGTTCAGCTGTGGGCACAA
60.828
57.895
14.67
0.00
44.79
3.33
3204
5503
1.360192
GTTCAGCTGTGGGCACAAC
59.640
57.895
14.67
5.00
44.79
3.32
3205
5504
1.077140
TTCAGCTGTGGGCACAACA
60.077
52.632
14.67
0.00
44.79
3.33
3206
5505
0.467844
TTCAGCTGTGGGCACAACAT
60.468
50.000
14.67
0.00
44.79
2.71
3207
5506
0.399833
TCAGCTGTGGGCACAACATA
59.600
50.000
14.67
0.00
44.79
2.29
3208
5507
1.202867
TCAGCTGTGGGCACAACATAA
60.203
47.619
14.67
0.00
44.79
1.90
3209
5508
1.068333
CAGCTGTGGGCACAACATAAC
60.068
52.381
5.25
0.00
44.79
1.89
3210
5509
0.958091
GCTGTGGGCACAACATAACA
59.042
50.000
0.00
0.00
41.33
2.41
3211
5510
1.339610
GCTGTGGGCACAACATAACAA
59.660
47.619
0.00
0.00
41.33
2.83
3212
5511
2.607771
GCTGTGGGCACAACATAACAAG
60.608
50.000
0.00
0.00
41.33
3.16
3213
5512
1.339610
TGTGGGCACAACATAACAAGC
59.660
47.619
0.00
0.00
38.56
4.01
3214
5513
1.613437
GTGGGCACAACATAACAAGCT
59.387
47.619
0.00
0.00
0.00
3.74
3215
5514
1.612950
TGGGCACAACATAACAAGCTG
59.387
47.619
0.00
0.00
0.00
4.24
3216
5515
1.885887
GGGCACAACATAACAAGCTGA
59.114
47.619
0.00
0.00
0.00
4.26
3217
5516
2.295909
GGGCACAACATAACAAGCTGAA
59.704
45.455
0.00
0.00
0.00
3.02
3218
5517
3.308530
GGCACAACATAACAAGCTGAAC
58.691
45.455
0.00
0.00
0.00
3.18
3219
5518
3.243367
GGCACAACATAACAAGCTGAACA
60.243
43.478
0.00
0.00
0.00
3.18
3220
5519
3.730715
GCACAACATAACAAGCTGAACAC
59.269
43.478
0.00
0.00
0.00
3.32
3221
5520
4.733230
GCACAACATAACAAGCTGAACACA
60.733
41.667
0.00
0.00
0.00
3.72
3222
5521
5.522456
CACAACATAACAAGCTGAACACAT
58.478
37.500
0.00
0.00
0.00
3.21
3223
5522
5.400188
CACAACATAACAAGCTGAACACATG
59.600
40.000
0.00
0.00
0.00
3.21
3224
5523
4.164822
ACATAACAAGCTGAACACATGC
57.835
40.909
0.00
0.00
0.00
4.06
3225
5524
2.967459
TAACAAGCTGAACACATGCG
57.033
45.000
0.00
0.00
0.00
4.73
3226
5525
0.318107
AACAAGCTGAACACATGCGC
60.318
50.000
0.00
0.00
0.00
6.09
3227
5526
1.283487
CAAGCTGAACACATGCGCA
59.717
52.632
14.96
14.96
0.00
6.09
3228
5527
1.000233
CAAGCTGAACACATGCGCAC
61.000
55.000
14.90
0.00
0.00
5.34
3229
5528
1.446516
AAGCTGAACACATGCGCACA
61.447
50.000
14.90
3.62
0.00
4.57
3230
5529
1.008652
GCTGAACACATGCGCACAA
60.009
52.632
14.90
0.00
0.00
3.33
3231
5530
1.000233
GCTGAACACATGCGCACAAG
61.000
55.000
14.90
8.75
0.00
3.16
3232
5531
0.587768
CTGAACACATGCGCACAAGA
59.412
50.000
14.90
0.00
0.00
3.02
3233
5532
0.307453
TGAACACATGCGCACAAGAC
59.693
50.000
14.90
3.62
0.00
3.01
3234
5533
0.307453
GAACACATGCGCACAAGACA
59.693
50.000
14.90
0.00
0.00
3.41
3235
5534
0.737804
AACACATGCGCACAAGACAA
59.262
45.000
14.90
0.00
0.00
3.18
3236
5535
0.029300
ACACATGCGCACAAGACAAC
59.971
50.000
14.90
0.00
0.00
3.32
3237
5536
0.029167
CACATGCGCACAAGACAACA
59.971
50.000
14.90
0.00
0.00
3.33
3238
5537
0.029300
ACATGCGCACAAGACAACAC
59.971
50.000
14.90
0.00
0.00
3.32
3239
5538
0.029167
CATGCGCACAAGACAACACA
59.971
50.000
14.90
0.00
0.00
3.72
3240
5539
0.953727
ATGCGCACAAGACAACACAT
59.046
45.000
14.90
0.00
0.00
3.21
3241
5540
1.587547
TGCGCACAAGACAACACATA
58.412
45.000
5.66
0.00
0.00
2.29
3242
5541
1.943340
TGCGCACAAGACAACACATAA
59.057
42.857
5.66
0.00
0.00
1.90
3243
5542
2.356069
TGCGCACAAGACAACACATAAA
59.644
40.909
5.66
0.00
0.00
1.40
3244
5543
2.719046
GCGCACAAGACAACACATAAAC
59.281
45.455
0.30
0.00
0.00
2.01
3245
5544
2.964123
CGCACAAGACAACACATAAACG
59.036
45.455
0.00
0.00
0.00
3.60
3246
5545
3.296628
GCACAAGACAACACATAAACGG
58.703
45.455
0.00
0.00
0.00
4.44
3247
5546
3.296628
CACAAGACAACACATAAACGGC
58.703
45.455
0.00
0.00
0.00
5.68
3248
5547
2.032377
ACAAGACAACACATAAACGGCG
60.032
45.455
4.80
4.80
0.00
6.46
3249
5548
2.157834
AGACAACACATAAACGGCGA
57.842
45.000
16.62
0.00
0.00
5.54
3250
5549
2.695359
AGACAACACATAAACGGCGAT
58.305
42.857
16.62
0.00
0.00
4.58
3251
5550
2.415168
AGACAACACATAAACGGCGATG
59.585
45.455
16.62
9.99
0.00
3.84
3252
5551
1.466950
ACAACACATAAACGGCGATGG
59.533
47.619
16.62
4.09
0.00
3.51
3253
5552
0.450184
AACACATAAACGGCGATGGC
59.550
50.000
16.62
0.00
38.90
4.40
3270
5569
3.480133
CGGCGGGGAAGGGAAGAT
61.480
66.667
0.00
0.00
0.00
2.40
3271
5570
2.511403
GGCGGGGAAGGGAAGATC
59.489
66.667
0.00
0.00
0.00
2.75
3272
5571
2.073101
GGCGGGGAAGGGAAGATCT
61.073
63.158
0.00
0.00
0.00
2.75
3273
5572
0.763223
GGCGGGGAAGGGAAGATCTA
60.763
60.000
0.00
0.00
0.00
1.98
3274
5573
1.129058
GCGGGGAAGGGAAGATCTAA
58.871
55.000
0.00
0.00
0.00
2.10
3275
5574
1.700186
GCGGGGAAGGGAAGATCTAAT
59.300
52.381
0.00
0.00
0.00
1.73
3276
5575
2.289756
GCGGGGAAGGGAAGATCTAATC
60.290
54.545
0.00
0.00
0.00
1.75
3277
5576
2.303311
CGGGGAAGGGAAGATCTAATCC
59.697
54.545
5.02
5.02
34.85
3.01
3278
5577
3.327439
GGGGAAGGGAAGATCTAATCCA
58.673
50.000
14.18
0.00
37.46
3.41
3279
5578
3.329225
GGGGAAGGGAAGATCTAATCCAG
59.671
52.174
14.18
0.00
37.46
3.86
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
8
9
3.616956
ATCAAATGGTCGAGCTTCTGA
57.383
42.857
16.64
12.33
0.00
3.27
9
10
4.872691
ACTTATCAAATGGTCGAGCTTCTG
59.127
41.667
16.64
6.83
0.00
3.02
100
104
2.928116
GTGTACTACATCCGAGTTTGCC
59.072
50.000
0.00
0.00
0.00
4.52
126
133
2.507407
AACGGAATGTGGTGGCTATT
57.493
45.000
0.00
0.00
0.00
1.73
160
167
8.967664
TGTGTACTACTTTTCTTTGGTAATGT
57.032
30.769
0.00
0.00
0.00
2.71
161
168
9.878599
CTTGTGTACTACTTTTCTTTGGTAATG
57.121
33.333
0.00
0.00
0.00
1.90
162
169
9.623000
ACTTGTGTACTACTTTTCTTTGGTAAT
57.377
29.630
0.00
0.00
0.00
1.89
224
232
2.408704
CGAAACCAGCGTAGAGTCTTTG
59.591
50.000
0.00
0.00
0.00
2.77
252
260
1.153086
GCTCCAATGTCCGCCTCAT
60.153
57.895
0.00
0.00
0.00
2.90
273
281
4.276431
GTCCTCCTATCTACGAAGACCTTG
59.724
50.000
0.00
0.00
33.57
3.61
284
292
3.244146
CCTTCTCGTCGTCCTCCTATCTA
60.244
52.174
0.00
0.00
0.00
1.98
470
480
4.382147
GCTGTCTAGTTTAGGACTTCAGGG
60.382
50.000
0.00
0.00
39.86
4.45
474
484
3.180613
GCGCTGTCTAGTTTAGGACTTC
58.819
50.000
0.00
0.00
39.86
3.01
544
555
2.203181
GATGGAGAGCCTGGCTGC
60.203
66.667
28.82
17.41
39.88
5.25
553
564
4.450053
CAGGCCTAAGAAAAGATGGAGAG
58.550
47.826
3.98
0.00
0.00
3.20
776
791
3.802685
CCAACGATCTCCCTCGAAAATAC
59.197
47.826
0.00
0.00
41.12
1.89
1810
1834
1.274728
CCTGTCTGTTCTGTCCTCCAG
59.725
57.143
0.00
0.00
42.97
3.86
1866
1890
2.254546
TCACTACCAGGCACAACTTG
57.745
50.000
0.00
0.00
0.00
3.16
1870
1894
0.973632
ACGATCACTACCAGGCACAA
59.026
50.000
0.00
0.00
0.00
3.33
1892
1922
2.997897
ACACCTCCGCCTCCTCAC
60.998
66.667
0.00
0.00
0.00
3.51
2130
2175
7.107639
ACAAGTGCAAAATTAGTACCACTTT
57.892
32.000
7.02
0.00
40.39
2.66
2399
2468
5.700373
TGTCGACATCATCAAGATTTGTTGA
59.300
36.000
15.76
5.36
41.89
3.18
2465
2544
7.174253
TGACCTGAAGTGGTGTTAATAAATGAC
59.826
37.037
0.00
0.00
41.00
3.06
2638
2721
6.949352
ATCGAACCAAGCTTTAATGATCAT
57.051
33.333
1.18
1.18
0.00
2.45
2804
5100
6.821160
TGAAAGTTTCAATTTTGGGAAAGGTC
59.179
34.615
15.92
0.00
36.59
3.85
2852
5148
5.047872
CCATGAAGTCATCCATGTTCAAACA
60.048
40.000
0.00
0.00
38.69
2.83
2944
5241
5.615544
CGAACTTTATGTGGCTTGACTTCAG
60.616
44.000
0.00
0.00
0.00
3.02
3043
5342
7.487180
CGAAAACCTTTTTCGGTACAATATG
57.513
36.000
20.78
0.00
45.17
1.78
3054
5353
1.411246
AGTGGGGCGAAAACCTTTTTC
59.589
47.619
1.93
1.93
0.00
2.29
3055
5354
1.491668
AGTGGGGCGAAAACCTTTTT
58.508
45.000
0.00
0.00
0.00
1.94
3056
5355
1.491668
AAGTGGGGCGAAAACCTTTT
58.508
45.000
0.00
0.00
0.00
2.27
3057
5356
1.491668
AAAGTGGGGCGAAAACCTTT
58.508
45.000
0.00
0.00
0.00
3.11
3058
5357
2.368311
TAAAGTGGGGCGAAAACCTT
57.632
45.000
0.00
0.00
0.00
3.50
3059
5358
2.597578
ATAAAGTGGGGCGAAAACCT
57.402
45.000
0.00
0.00
0.00
3.50
3060
5359
4.787260
TTTATAAAGTGGGGCGAAAACC
57.213
40.909
0.00
0.00
0.00
3.27
3061
5360
7.009815
GCTTTATTTATAAAGTGGGGCGAAAAC
59.990
37.037
18.51
0.69
46.78
2.43
3062
5361
7.036829
GCTTTATTTATAAAGTGGGGCGAAAA
58.963
34.615
18.51
0.00
46.78
2.29
3063
5362
6.153000
TGCTTTATTTATAAAGTGGGGCGAAA
59.847
34.615
18.51
0.00
46.78
3.46
3064
5363
5.652891
TGCTTTATTTATAAAGTGGGGCGAA
59.347
36.000
18.51
0.00
46.78
4.70
3065
5364
5.194432
TGCTTTATTTATAAAGTGGGGCGA
58.806
37.500
18.51
0.76
46.78
5.54
3066
5365
5.508200
TGCTTTATTTATAAAGTGGGGCG
57.492
39.130
18.51
0.00
46.78
6.13
3067
5366
6.046593
GGTTGCTTTATTTATAAAGTGGGGC
58.953
40.000
18.51
9.14
46.78
5.80
3068
5367
7.039270
GTGGTTGCTTTATTTATAAAGTGGGG
58.961
38.462
18.51
0.99
46.78
4.96
3069
5368
7.039270
GGTGGTTGCTTTATTTATAAAGTGGG
58.961
38.462
18.51
1.28
46.78
4.61
3070
5369
6.750039
CGGTGGTTGCTTTATTTATAAAGTGG
59.250
38.462
18.51
1.56
46.78
4.00
3071
5370
7.531716
TCGGTGGTTGCTTTATTTATAAAGTG
58.468
34.615
18.51
2.11
46.78
3.16
3072
5371
7.627726
GCTCGGTGGTTGCTTTATTTATAAAGT
60.628
37.037
18.51
0.00
46.78
2.66
3074
5373
6.151312
TGCTCGGTGGTTGCTTTATTTATAAA
59.849
34.615
0.00
0.00
0.00
1.40
3075
5374
5.648526
TGCTCGGTGGTTGCTTTATTTATAA
59.351
36.000
0.00
0.00
0.00
0.98
3076
5375
5.065474
GTGCTCGGTGGTTGCTTTATTTATA
59.935
40.000
0.00
0.00
0.00
0.98
3077
5376
4.013728
TGCTCGGTGGTTGCTTTATTTAT
58.986
39.130
0.00
0.00
0.00
1.40
3078
5377
3.189702
GTGCTCGGTGGTTGCTTTATTTA
59.810
43.478
0.00
0.00
0.00
1.40
3079
5378
2.030274
GTGCTCGGTGGTTGCTTTATTT
60.030
45.455
0.00
0.00
0.00
1.40
3080
5379
1.539827
GTGCTCGGTGGTTGCTTTATT
59.460
47.619
0.00
0.00
0.00
1.40
3081
5380
1.165270
GTGCTCGGTGGTTGCTTTAT
58.835
50.000
0.00
0.00
0.00
1.40
3082
5381
0.179043
TGTGCTCGGTGGTTGCTTTA
60.179
50.000
0.00
0.00
0.00
1.85
3083
5382
1.034838
TTGTGCTCGGTGGTTGCTTT
61.035
50.000
0.00
0.00
0.00
3.51
3084
5383
1.453015
TTGTGCTCGGTGGTTGCTT
60.453
52.632
0.00
0.00
0.00
3.91
3085
5384
2.186826
GTTGTGCTCGGTGGTTGCT
61.187
57.895
0.00
0.00
0.00
3.91
3086
5385
2.331451
GTTGTGCTCGGTGGTTGC
59.669
61.111
0.00
0.00
0.00
4.17
3087
5386
1.711060
AACGTTGTGCTCGGTGGTTG
61.711
55.000
0.00
0.00
0.00
3.77
3088
5387
1.433837
GAACGTTGTGCTCGGTGGTT
61.434
55.000
5.00
0.00
0.00
3.67
3089
5388
1.885850
GAACGTTGTGCTCGGTGGT
60.886
57.895
5.00
0.00
0.00
4.16
3090
5389
1.885388
TGAACGTTGTGCTCGGTGG
60.885
57.895
5.00
0.00
0.00
4.61
3091
5390
1.275657
GTGAACGTTGTGCTCGGTG
59.724
57.895
5.00
0.00
0.00
4.94
3092
5391
0.741574
TTGTGAACGTTGTGCTCGGT
60.742
50.000
5.00
0.00
0.00
4.69
3093
5392
0.042188
CTTGTGAACGTTGTGCTCGG
60.042
55.000
5.00
0.00
0.00
4.63
3094
5393
0.042188
CCTTGTGAACGTTGTGCTCG
60.042
55.000
5.00
0.00
0.00
5.03
3095
5394
1.014352
ACCTTGTGAACGTTGTGCTC
58.986
50.000
5.00
0.00
0.00
4.26
3096
5395
2.319136
TACCTTGTGAACGTTGTGCT
57.681
45.000
5.00
0.00
0.00
4.40
3097
5396
2.546368
TGATACCTTGTGAACGTTGTGC
59.454
45.455
5.00
0.00
0.00
4.57
3098
5397
5.407084
TGTATGATACCTTGTGAACGTTGTG
59.593
40.000
5.00
0.00
0.00
3.33
3099
5398
5.543714
TGTATGATACCTTGTGAACGTTGT
58.456
37.500
5.00
0.00
0.00
3.32
3100
5399
6.474819
TTGTATGATACCTTGTGAACGTTG
57.525
37.500
5.00
0.00
0.00
4.10
3101
5400
7.357303
GTTTTGTATGATACCTTGTGAACGTT
58.643
34.615
0.00
0.00
0.00
3.99
3102
5401
6.072893
GGTTTTGTATGATACCTTGTGAACGT
60.073
38.462
0.00
0.00
0.00
3.99
3103
5402
6.311723
GGTTTTGTATGATACCTTGTGAACG
58.688
40.000
0.00
0.00
0.00
3.95
3104
5403
6.207810
TGGGTTTTGTATGATACCTTGTGAAC
59.792
38.462
0.00
0.00
0.00
3.18
3105
5404
6.207810
GTGGGTTTTGTATGATACCTTGTGAA
59.792
38.462
0.00
0.00
0.00
3.18
3106
5405
5.708230
GTGGGTTTTGTATGATACCTTGTGA
59.292
40.000
0.00
0.00
0.00
3.58
3107
5406
5.475220
TGTGGGTTTTGTATGATACCTTGTG
59.525
40.000
0.00
0.00
0.00
3.33
3108
5407
5.636123
TGTGGGTTTTGTATGATACCTTGT
58.364
37.500
0.00
0.00
0.00
3.16
3109
5408
6.582677
TTGTGGGTTTTGTATGATACCTTG
57.417
37.500
0.00
0.00
0.00
3.61
3110
5409
6.551601
TGTTTGTGGGTTTTGTATGATACCTT
59.448
34.615
0.00
0.00
0.00
3.50
3111
5410
6.015772
GTGTTTGTGGGTTTTGTATGATACCT
60.016
38.462
0.00
0.00
0.00
3.08
3112
5411
6.153756
GTGTTTGTGGGTTTTGTATGATACC
58.846
40.000
0.00
0.00
0.00
2.73
3113
5412
6.639279
GTGTGTTTGTGGGTTTTGTATGATAC
59.361
38.462
0.00
0.00
0.00
2.24
3114
5413
6.321435
TGTGTGTTTGTGGGTTTTGTATGATA
59.679
34.615
0.00
0.00
0.00
2.15
3115
5414
5.127845
TGTGTGTTTGTGGGTTTTGTATGAT
59.872
36.000
0.00
0.00
0.00
2.45
3116
5415
4.462834
TGTGTGTTTGTGGGTTTTGTATGA
59.537
37.500
0.00
0.00
0.00
2.15
3117
5416
4.564769
GTGTGTGTTTGTGGGTTTTGTATG
59.435
41.667
0.00
0.00
0.00
2.39
3118
5417
4.220821
TGTGTGTGTTTGTGGGTTTTGTAT
59.779
37.500
0.00
0.00
0.00
2.29
3119
5418
3.572682
TGTGTGTGTTTGTGGGTTTTGTA
59.427
39.130
0.00
0.00
0.00
2.41
3120
5419
2.365617
TGTGTGTGTTTGTGGGTTTTGT
59.634
40.909
0.00
0.00
0.00
2.83
3121
5420
3.032017
TGTGTGTGTTTGTGGGTTTTG
57.968
42.857
0.00
0.00
0.00
2.44
3122
5421
3.394719
GTTGTGTGTGTTTGTGGGTTTT
58.605
40.909
0.00
0.00
0.00
2.43
3123
5422
2.608261
CGTTGTGTGTGTTTGTGGGTTT
60.608
45.455
0.00
0.00
0.00
3.27
3124
5423
1.068194
CGTTGTGTGTGTTTGTGGGTT
60.068
47.619
0.00
0.00
0.00
4.11
3125
5424
0.523966
CGTTGTGTGTGTTTGTGGGT
59.476
50.000
0.00
0.00
0.00
4.51
3126
5425
0.800300
GCGTTGTGTGTGTTTGTGGG
60.800
55.000
0.00
0.00
0.00
4.61
3127
5426
0.170116
AGCGTTGTGTGTGTTTGTGG
59.830
50.000
0.00
0.00
0.00
4.17
3128
5427
2.436670
GTAGCGTTGTGTGTGTTTGTG
58.563
47.619
0.00
0.00
0.00
3.33
3129
5428
1.399089
GGTAGCGTTGTGTGTGTTTGT
59.601
47.619
0.00
0.00
0.00
2.83
3130
5429
1.593551
CGGTAGCGTTGTGTGTGTTTG
60.594
52.381
6.07
0.00
0.00
2.93
3131
5430
0.653636
CGGTAGCGTTGTGTGTGTTT
59.346
50.000
6.07
0.00
0.00
2.83
3132
5431
1.768112
GCGGTAGCGTTGTGTGTGTT
61.768
55.000
16.63
0.00
0.00
3.32
3133
5432
2.241880
GCGGTAGCGTTGTGTGTGT
61.242
57.895
16.63
0.00
0.00
3.72
3134
5433
2.549282
GCGGTAGCGTTGTGTGTG
59.451
61.111
16.63
0.00
0.00
3.82
3145
5444
4.814294
GACCGGTGCCTGCGGTAG
62.814
72.222
14.63
0.00
36.01
3.18
3150
5449
4.947147
TGTTGGACCGGTGCCTGC
62.947
66.667
24.47
13.57
0.00
4.85
3151
5450
2.978010
GTGTTGGACCGGTGCCTG
60.978
66.667
24.47
0.00
0.00
4.85
3152
5451
3.484806
TGTGTTGGACCGGTGCCT
61.485
61.111
24.47
0.00
0.00
4.75
3153
5452
3.284449
GTGTGTTGGACCGGTGCC
61.284
66.667
24.47
18.61
0.00
5.01
3154
5453
3.284449
GGTGTGTTGGACCGGTGC
61.284
66.667
20.69
20.69
0.00
5.01
3155
5454
2.593436
GGGTGTGTTGGACCGGTG
60.593
66.667
14.63
0.00
33.89
4.94
3156
5455
2.770904
AGGGTGTGTTGGACCGGT
60.771
61.111
6.92
6.92
33.89
5.28
3157
5456
2.032071
GAGGGTGTGTTGGACCGG
59.968
66.667
0.00
0.00
33.89
5.28
3158
5457
1.597027
GTGAGGGTGTGTTGGACCG
60.597
63.158
0.00
0.00
33.89
4.79
3159
5458
0.106918
TTGTGAGGGTGTGTTGGACC
60.107
55.000
0.00
0.00
0.00
4.46
3160
5459
1.404035
GTTTGTGAGGGTGTGTTGGAC
59.596
52.381
0.00
0.00
0.00
4.02
3161
5460
1.004862
TGTTTGTGAGGGTGTGTTGGA
59.995
47.619
0.00
0.00
0.00
3.53
3162
5461
1.468985
TGTTTGTGAGGGTGTGTTGG
58.531
50.000
0.00
0.00
0.00
3.77
3163
5462
4.261572
CCTTATGTTTGTGAGGGTGTGTTG
60.262
45.833
0.00
0.00
0.00
3.33
3164
5463
3.888930
CCTTATGTTTGTGAGGGTGTGTT
59.111
43.478
0.00
0.00
0.00
3.32
3165
5464
3.117663
ACCTTATGTTTGTGAGGGTGTGT
60.118
43.478
0.00
0.00
33.51
3.72
3166
5465
3.486383
ACCTTATGTTTGTGAGGGTGTG
58.514
45.455
0.00
0.00
33.51
3.82
3167
5466
3.876309
ACCTTATGTTTGTGAGGGTGT
57.124
42.857
0.00
0.00
33.51
4.16
3168
5467
4.141287
TGAACCTTATGTTTGTGAGGGTG
58.859
43.478
0.00
0.00
37.29
4.61
3169
5468
4.398319
CTGAACCTTATGTTTGTGAGGGT
58.602
43.478
0.00
0.00
37.29
4.34
3170
5469
3.191371
GCTGAACCTTATGTTTGTGAGGG
59.809
47.826
0.00
0.00
37.29
4.30
3171
5470
4.074970
AGCTGAACCTTATGTTTGTGAGG
58.925
43.478
0.00
0.00
37.29
3.86
3172
5471
4.516698
ACAGCTGAACCTTATGTTTGTGAG
59.483
41.667
23.35
0.00
37.29
3.51
3173
5472
4.275689
CACAGCTGAACCTTATGTTTGTGA
59.724
41.667
23.35
0.00
41.37
3.58
3174
5473
4.539870
CACAGCTGAACCTTATGTTTGTG
58.460
43.478
23.35
0.00
37.29
3.33
3175
5474
3.569701
CCACAGCTGAACCTTATGTTTGT
59.430
43.478
23.35
0.00
37.29
2.83
3176
5475
3.057315
CCCACAGCTGAACCTTATGTTTG
60.057
47.826
23.35
2.92
37.29
2.93
3177
5476
3.157087
CCCACAGCTGAACCTTATGTTT
58.843
45.455
23.35
0.00
37.29
2.83
3178
5477
2.795329
CCCACAGCTGAACCTTATGTT
58.205
47.619
23.35
0.00
40.81
2.71
3179
5478
1.614317
GCCCACAGCTGAACCTTATGT
60.614
52.381
23.35
0.00
38.99
2.29
3180
5479
1.098050
GCCCACAGCTGAACCTTATG
58.902
55.000
23.35
5.94
38.99
1.90
3181
5480
0.698238
TGCCCACAGCTGAACCTTAT
59.302
50.000
23.35
0.00
44.23
1.73
3182
5481
0.250727
GTGCCCACAGCTGAACCTTA
60.251
55.000
23.35
0.00
44.23
2.69
3183
5482
1.529244
GTGCCCACAGCTGAACCTT
60.529
57.895
23.35
0.00
44.23
3.50
3184
5483
2.113986
GTGCCCACAGCTGAACCT
59.886
61.111
23.35
0.00
44.23
3.50
3185
5484
1.827789
TTGTGCCCACAGCTGAACC
60.828
57.895
23.35
6.11
42.94
3.62
3186
5485
1.360192
GTTGTGCCCACAGCTGAAC
59.640
57.895
23.35
8.64
42.94
3.18
3187
5486
0.467844
ATGTTGTGCCCACAGCTGAA
60.468
50.000
23.35
0.00
42.94
3.02
3188
5487
0.399833
TATGTTGTGCCCACAGCTGA
59.600
50.000
23.35
0.00
42.94
4.26
3189
5488
1.068333
GTTATGTTGTGCCCACAGCTG
60.068
52.381
13.48
13.48
42.94
4.24
3190
5489
1.247567
GTTATGTTGTGCCCACAGCT
58.752
50.000
14.73
5.13
42.94
4.24
3191
5490
0.958091
TGTTATGTTGTGCCCACAGC
59.042
50.000
8.11
8.11
42.94
4.40
3192
5491
2.607771
GCTTGTTATGTTGTGCCCACAG
60.608
50.000
1.02
0.00
42.94
3.66
3193
5492
1.339610
GCTTGTTATGTTGTGCCCACA
59.660
47.619
0.00
0.00
39.98
4.17
3194
5493
1.613437
AGCTTGTTATGTTGTGCCCAC
59.387
47.619
0.00
0.00
0.00
4.61
3195
5494
1.612950
CAGCTTGTTATGTTGTGCCCA
59.387
47.619
0.00
0.00
0.00
5.36
3196
5495
1.885887
TCAGCTTGTTATGTTGTGCCC
59.114
47.619
0.00
0.00
0.00
5.36
3197
5496
3.243367
TGTTCAGCTTGTTATGTTGTGCC
60.243
43.478
0.00
0.00
0.00
5.01
3198
5497
3.730715
GTGTTCAGCTTGTTATGTTGTGC
59.269
43.478
0.00
0.00
0.00
4.57
3199
5498
4.919206
TGTGTTCAGCTTGTTATGTTGTG
58.081
39.130
0.00
0.00
0.00
3.33
3200
5499
5.522456
CATGTGTTCAGCTTGTTATGTTGT
58.478
37.500
0.00
0.00
0.00
3.32
3201
5500
4.383649
GCATGTGTTCAGCTTGTTATGTTG
59.616
41.667
0.00
0.00
0.00
3.33
3202
5501
4.549458
GCATGTGTTCAGCTTGTTATGTT
58.451
39.130
0.00
0.00
0.00
2.71
3203
5502
3.365264
CGCATGTGTTCAGCTTGTTATGT
60.365
43.478
0.00
0.00
0.00
2.29
3204
5503
3.165890
CGCATGTGTTCAGCTTGTTATG
58.834
45.455
0.00
0.00
0.00
1.90
3205
5504
2.414559
GCGCATGTGTTCAGCTTGTTAT
60.415
45.455
0.30
0.00
0.00
1.89
3206
5505
1.069296
GCGCATGTGTTCAGCTTGTTA
60.069
47.619
0.30
0.00
0.00
2.41
3207
5506
0.318107
GCGCATGTGTTCAGCTTGTT
60.318
50.000
0.30
0.00
0.00
2.83
3208
5507
1.283793
GCGCATGTGTTCAGCTTGT
59.716
52.632
0.30
0.00
0.00
3.16
3209
5508
1.000233
GTGCGCATGTGTTCAGCTTG
61.000
55.000
15.91
0.00
0.00
4.01
3210
5509
1.283793
GTGCGCATGTGTTCAGCTT
59.716
52.632
15.91
0.00
0.00
3.74
3211
5510
1.446516
TTGTGCGCATGTGTTCAGCT
61.447
50.000
15.91
0.00
0.00
4.24
3212
5511
1.000233
CTTGTGCGCATGTGTTCAGC
61.000
55.000
15.91
0.00
0.00
4.26
3213
5512
0.587768
TCTTGTGCGCATGTGTTCAG
59.412
50.000
15.91
2.17
0.00
3.02
3214
5513
0.307453
GTCTTGTGCGCATGTGTTCA
59.693
50.000
15.91
1.77
0.00
3.18
3215
5514
0.307453
TGTCTTGTGCGCATGTGTTC
59.693
50.000
15.91
0.00
0.00
3.18
3216
5515
0.737804
TTGTCTTGTGCGCATGTGTT
59.262
45.000
15.91
0.00
0.00
3.32
3217
5516
0.029300
GTTGTCTTGTGCGCATGTGT
59.971
50.000
15.91
0.00
0.00
3.72
3218
5517
0.029167
TGTTGTCTTGTGCGCATGTG
59.971
50.000
15.91
6.77
0.00
3.21
3219
5518
0.029300
GTGTTGTCTTGTGCGCATGT
59.971
50.000
15.91
0.00
0.00
3.21
3220
5519
0.029167
TGTGTTGTCTTGTGCGCATG
59.971
50.000
15.91
7.59
0.00
4.06
3221
5520
0.953727
ATGTGTTGTCTTGTGCGCAT
59.046
45.000
15.91
0.00
0.00
4.73
3222
5521
1.587547
TATGTGTTGTCTTGTGCGCA
58.412
45.000
5.66
5.66
0.00
6.09
3223
5522
2.679355
TTATGTGTTGTCTTGTGCGC
57.321
45.000
0.00
0.00
0.00
6.09
3224
5523
2.964123
CGTTTATGTGTTGTCTTGTGCG
59.036
45.455
0.00
0.00
0.00
5.34
3225
5524
3.296628
CCGTTTATGTGTTGTCTTGTGC
58.703
45.455
0.00
0.00
0.00
4.57
3226
5525
3.296628
GCCGTTTATGTGTTGTCTTGTG
58.703
45.455
0.00
0.00
0.00
3.33
3227
5526
2.032377
CGCCGTTTATGTGTTGTCTTGT
60.032
45.455
0.00
0.00
0.00
3.16
3228
5527
2.222213
TCGCCGTTTATGTGTTGTCTTG
59.778
45.455
0.00
0.00
0.00
3.02
3229
5528
2.485903
TCGCCGTTTATGTGTTGTCTT
58.514
42.857
0.00
0.00
0.00
3.01
3230
5529
2.157834
TCGCCGTTTATGTGTTGTCT
57.842
45.000
0.00
0.00
0.00
3.41
3231
5530
2.475519
CCATCGCCGTTTATGTGTTGTC
60.476
50.000
0.00
0.00
0.00
3.18
3232
5531
1.466950
CCATCGCCGTTTATGTGTTGT
59.533
47.619
0.00
0.00
0.00
3.32
3233
5532
1.793714
GCCATCGCCGTTTATGTGTTG
60.794
52.381
0.00
0.00
0.00
3.33
3234
5533
0.450184
GCCATCGCCGTTTATGTGTT
59.550
50.000
0.00
0.00
0.00
3.32
3235
5534
1.701545
CGCCATCGCCGTTTATGTGT
61.702
55.000
0.00
0.00
0.00
3.72
3236
5535
1.011242
CGCCATCGCCGTTTATGTG
60.011
57.895
0.00
0.00
0.00
3.21
3237
5536
2.177580
CCGCCATCGCCGTTTATGT
61.178
57.895
0.00
0.00
0.00
2.29
3238
5537
2.631428
CCGCCATCGCCGTTTATG
59.369
61.111
0.00
0.00
0.00
1.90
3239
5538
3.276846
GCCGCCATCGCCGTTTAT
61.277
61.111
0.00
0.00
0.00
1.40
3253
5552
3.462199
GATCTTCCCTTCCCCGCCG
62.462
68.421
0.00
0.00
0.00
6.46
3254
5553
0.763223
TAGATCTTCCCTTCCCCGCC
60.763
60.000
0.00
0.00
0.00
6.13
3255
5554
1.129058
TTAGATCTTCCCTTCCCCGC
58.871
55.000
0.00
0.00
0.00
6.13
3256
5555
2.303311
GGATTAGATCTTCCCTTCCCCG
59.697
54.545
0.00
0.00
0.00
5.73
3257
5556
3.327439
TGGATTAGATCTTCCCTTCCCC
58.673
50.000
10.39
0.00
0.00
4.81
3258
5557
4.632327
CTGGATTAGATCTTCCCTTCCC
57.368
50.000
10.39
0.43
0.00
3.97
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.