Multiple sequence alignment - TraesCS7B01G169600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G169600 chr7B 100.000 4265 0 0 1 4265 240487729 240491993 0.000000e+00 7877.0
1 TraesCS7B01G169600 chr7D 90.420 1952 99 40 208 2101 263046628 263044707 0.000000e+00 2488.0
2 TraesCS7B01G169600 chr7D 98.068 880 11 1 2726 3605 263043834 263042961 0.000000e+00 1526.0
3 TraesCS7B01G169600 chr7D 95.928 614 17 3 2099 2705 263044674 263044062 0.000000e+00 989.0
4 TraesCS7B01G169600 chr7D 76.296 135 26 2 340 468 571276306 571276172 2.750000e-07 67.6
5 TraesCS7B01G169600 chr7A 89.832 1190 79 24 138 1296 285795672 285794494 0.000000e+00 1489.0
6 TraesCS7B01G169600 chr7A 95.078 833 38 2 2774 3605 285792707 285791877 0.000000e+00 1308.0
7 TraesCS7B01G169600 chr7A 93.423 593 30 4 2099 2683 285793530 285792939 0.000000e+00 870.0
8 TraesCS7B01G169600 chr7A 95.546 449 13 2 1650 2095 285794010 285793566 0.000000e+00 712.0
9 TraesCS7B01G169600 chr7A 85.924 341 12 14 1345 1657 285794500 285794168 8.840000e-87 331.0
10 TraesCS7B01G169600 chr4D 87.132 544 55 11 3604 4133 280776946 280776404 1.700000e-168 603.0
11 TraesCS7B01G169600 chr4D 91.837 49 4 0 1976 2024 385735002 385735050 7.650000e-08 69.4
12 TraesCS7B01G169600 chr3D 86.264 546 58 10 3604 4133 29164021 29163477 1.030000e-160 577.0
13 TraesCS7B01G169600 chr3D 85.165 546 63 11 3604 4133 66239758 66239215 1.040000e-150 544.0
14 TraesCS7B01G169600 chr5D 85.635 543 63 11 3604 4132 552348769 552348228 1.340000e-154 556.0
15 TraesCS7B01G169600 chr5D 84.375 544 69 10 3604 4133 510610860 510610319 1.760000e-143 520.0
16 TraesCS7B01G169600 chr5D 79.121 182 28 6 273 447 292162919 292163097 2.690000e-22 117.0
17 TraesCS7B01G169600 chr4A 92.737 358 24 2 3786 4141 704194742 704195099 2.270000e-142 516.0
18 TraesCS7B01G169600 chr4A 92.458 358 25 2 3786 4141 704248207 704248564 1.060000e-140 510.0
19 TraesCS7B01G169600 chr4A 92.416 356 25 2 3786 4139 704221513 704221868 1.370000e-139 507.0
20 TraesCS7B01G169600 chr4A 91.667 48 4 0 1976 2023 67170176 67170223 2.750000e-07 67.6
21 TraesCS7B01G169600 chr1A 85.776 464 49 10 3685 4133 347297370 347297831 3.860000e-130 475.0
22 TraesCS7B01G169600 chr1B 87.654 405 36 6 3604 3995 2042503 2042906 3.890000e-125 459.0
23 TraesCS7B01G169600 chr1B 87.500 232 25 2 2736 2963 283124414 283124183 9.090000e-67 265.0
24 TraesCS7B01G169600 chr5A 78.075 561 88 23 3604 4141 639100506 639099958 5.320000e-84 322.0
25 TraesCS7B01G169600 chr2D 88.745 231 21 3 2733 2959 28646515 28646744 1.170000e-70 278.0
26 TraesCS7B01G169600 chr2D 91.667 48 4 0 1975 2022 440590158 440590205 2.750000e-07 67.6
27 TraesCS7B01G169600 chr2D 93.333 45 3 0 1979 2023 440590252 440590208 2.750000e-07 67.6
28 TraesCS7B01G169600 chr2D 90.000 50 5 0 341 390 468804289 468804240 9.900000e-07 65.8
29 TraesCS7B01G169600 chr5B 99.200 125 1 0 2826 2950 546057453 546057329 4.290000e-55 226.0
30 TraesCS7B01G169600 chr5B 98.039 102 2 0 2261 2362 546057554 546057453 1.220000e-40 178.0
31 TraesCS7B01G169600 chr5B 98.958 96 1 0 3136 3231 546057331 546057236 5.670000e-39 172.0
32 TraesCS7B01G169600 chr5B 98.936 94 1 0 1031 1124 546058116 546058023 7.330000e-38 169.0
33 TraesCS7B01G169600 chr5B 98.000 50 1 0 1115 1164 546057601 546057552 2.110000e-13 87.9
34 TraesCS7B01G169600 chr6A 89.441 161 15 1 2802 2960 47888154 47888314 7.230000e-48 202.0
35 TraesCS7B01G169600 chr6A 79.310 116 18 4 334 444 177268421 177268307 4.570000e-10 76.8
36 TraesCS7B01G169600 chr2A 92.453 53 4 0 1975 2027 584051697 584051749 4.570000e-10 76.8
37 TraesCS7B01G169600 chr2A 93.750 48 3 0 360 407 120472080 120472033 5.920000e-09 73.1
38 TraesCS7B01G169600 chr2A 84.932 73 9 2 337 407 726325841 726325913 5.920000e-09 73.1
39 TraesCS7B01G169600 chr3A 78.689 122 19 3 334 449 616277336 616277216 1.640000e-09 75.0
40 TraesCS7B01G169600 chr6B 90.566 53 4 1 1971 2023 567471498 567471549 7.650000e-08 69.4
41 TraesCS7B01G169600 chr2B 91.667 48 4 0 1976 2023 97569865 97569912 2.750000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G169600 chr7B 240487729 240491993 4264 False 7877.000000 7877 100.000000 1 4265 1 chr7B.!!$F1 4264
1 TraesCS7B01G169600 chr7D 263042961 263046628 3667 True 1667.666667 2488 94.805333 208 3605 3 chr7D.!!$R2 3397
2 TraesCS7B01G169600 chr7A 285791877 285795672 3795 True 942.000000 1489 91.960600 138 3605 5 chr7A.!!$R1 3467
3 TraesCS7B01G169600 chr4D 280776404 280776946 542 True 603.000000 603 87.132000 3604 4133 1 chr4D.!!$R1 529
4 TraesCS7B01G169600 chr3D 29163477 29164021 544 True 577.000000 577 86.264000 3604 4133 1 chr3D.!!$R1 529
5 TraesCS7B01G169600 chr3D 66239215 66239758 543 True 544.000000 544 85.165000 3604 4133 1 chr3D.!!$R2 529
6 TraesCS7B01G169600 chr5D 552348228 552348769 541 True 556.000000 556 85.635000 3604 4132 1 chr5D.!!$R2 528
7 TraesCS7B01G169600 chr5D 510610319 510610860 541 True 520.000000 520 84.375000 3604 4133 1 chr5D.!!$R1 529
8 TraesCS7B01G169600 chr5A 639099958 639100506 548 True 322.000000 322 78.075000 3604 4141 1 chr5A.!!$R1 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.250038 CCTGCTAGCGGTGCACATAT 60.250 55.0 21.93 5.64 36.37 1.78 F
1024 1071 0.035915 GCAAGGTCACTTCTCCCCTC 60.036 60.0 0.00 0.00 33.81 4.30 F
1259 1306 0.242825 GGGGTTTTAGCTTTCGTGCC 59.757 55.0 0.00 0.00 0.00 5.01 F
2321 2606 0.532115 GGGGCAATGCATTTCTTCGT 59.468 50.0 9.83 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1415 1463 1.029947 AAAATAAGGTGCTCCCCGCG 61.030 55.000 0.00 0.0 43.27 6.46 R
2706 2992 1.329292 TGCGACACACAAAGTACAAGC 59.671 47.619 0.00 0.0 0.00 4.01 R
2716 3002 2.161410 GGCTGATAAAATGCGACACACA 59.839 45.455 0.00 0.0 0.00 3.72 R
4238 4755 0.261991 TCCTGTCCTCGAGCCCTAAT 59.738 55.000 6.99 0.0 0.00 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.710377 TGTCACAATACATCTGGCACC 58.290 47.619 0.00 0.00 0.00 5.01
27 28 2.017049 GTCACAATACATCTGGCACCC 58.983 52.381 0.00 0.00 0.00 4.61
28 29 1.915489 TCACAATACATCTGGCACCCT 59.085 47.619 0.00 0.00 0.00 4.34
29 30 2.019249 CACAATACATCTGGCACCCTG 58.981 52.381 0.00 0.00 0.00 4.45
30 31 1.027357 CAATACATCTGGCACCCTGC 58.973 55.000 0.00 0.00 44.08 4.85
31 32 0.921896 AATACATCTGGCACCCTGCT 59.078 50.000 0.00 0.00 44.28 4.24
32 33 1.806496 ATACATCTGGCACCCTGCTA 58.194 50.000 0.00 0.00 44.28 3.49
36 37 4.845580 CTGGCACCCTGCTAGCGG 62.846 72.222 17.14 17.14 44.71 5.52
40 41 4.393155 CACCCTGCTAGCGGTGCA 62.393 66.667 23.46 10.46 42.92 4.57
41 42 4.394712 ACCCTGCTAGCGGTGCAC 62.395 66.667 21.93 8.80 36.37 4.57
42 43 4.393155 CCCTGCTAGCGGTGCACA 62.393 66.667 21.93 0.00 36.37 4.57
43 44 2.124983 CCTGCTAGCGGTGCACAT 60.125 61.111 21.93 6.43 36.37 3.21
44 45 1.143838 CCTGCTAGCGGTGCACATA 59.856 57.895 21.93 7.31 36.37 2.29
45 46 0.250038 CCTGCTAGCGGTGCACATAT 60.250 55.000 21.93 5.64 36.37 1.78
46 47 1.586422 CTGCTAGCGGTGCACATATT 58.414 50.000 20.43 3.38 36.37 1.28
47 48 2.547855 CCTGCTAGCGGTGCACATATTA 60.548 50.000 21.93 4.43 36.37 0.98
48 49 2.476619 CTGCTAGCGGTGCACATATTAC 59.523 50.000 20.43 4.16 36.37 1.89
49 50 2.159028 TGCTAGCGGTGCACATATTACA 60.159 45.455 20.43 6.94 35.31 2.41
50 51 3.067106 GCTAGCGGTGCACATATTACAT 58.933 45.455 20.43 0.00 0.00 2.29
51 52 4.242475 GCTAGCGGTGCACATATTACATA 58.758 43.478 20.43 0.00 0.00 2.29
52 53 4.870426 GCTAGCGGTGCACATATTACATAT 59.130 41.667 20.43 0.00 0.00 1.78
53 54 5.351465 GCTAGCGGTGCACATATTACATATT 59.649 40.000 20.43 0.00 0.00 1.28
54 55 6.533723 GCTAGCGGTGCACATATTACATATTA 59.466 38.462 20.43 0.00 0.00 0.98
55 56 6.968131 AGCGGTGCACATATTACATATTAG 57.032 37.500 20.43 0.00 0.00 1.73
56 57 6.464222 AGCGGTGCACATATTACATATTAGT 58.536 36.000 20.43 0.00 0.00 2.24
57 58 6.368791 AGCGGTGCACATATTACATATTAGTG 59.631 38.462 20.43 0.00 0.00 2.74
58 59 6.534059 CGGTGCACATATTACATATTAGTGC 58.466 40.000 20.43 0.00 41.65 4.40
59 60 6.368791 CGGTGCACATATTACATATTAGTGCT 59.631 38.462 20.43 0.00 41.74 4.40
60 61 7.411912 CGGTGCACATATTACATATTAGTGCTC 60.412 40.741 20.43 11.11 41.74 4.26
61 62 7.411912 GGTGCACATATTACATATTAGTGCTCG 60.412 40.741 20.43 0.00 41.74 5.03
62 63 7.328493 GTGCACATATTACATATTAGTGCTCGA 59.672 37.037 13.17 0.00 41.74 4.04
63 64 8.034804 TGCACATATTACATATTAGTGCTCGAT 58.965 33.333 14.55 0.00 41.74 3.59
64 65 8.323854 GCACATATTACATATTAGTGCTCGATG 58.676 37.037 0.00 0.00 39.82 3.84
65 66 9.358872 CACATATTACATATTAGTGCTCGATGT 57.641 33.333 0.00 0.00 35.09 3.06
66 67 9.358872 ACATATTACATATTAGTGCTCGATGTG 57.641 33.333 0.00 5.27 33.05 3.21
67 68 6.712241 ATTACATATTAGTGCTCGATGTGC 57.288 37.500 0.00 0.00 33.05 4.57
68 69 4.327982 ACATATTAGTGCTCGATGTGCT 57.672 40.909 0.00 0.00 29.75 4.40
69 70 4.053983 ACATATTAGTGCTCGATGTGCTG 58.946 43.478 0.00 0.00 29.75 4.41
70 71 1.293924 ATTAGTGCTCGATGTGCTGC 58.706 50.000 0.00 0.00 0.00 5.25
71 72 0.740868 TTAGTGCTCGATGTGCTGCC 60.741 55.000 0.00 0.00 0.00 4.85
72 73 1.887344 TAGTGCTCGATGTGCTGCCA 61.887 55.000 0.00 0.00 0.00 4.92
73 74 2.032376 TGCTCGATGTGCTGCCAA 59.968 55.556 0.00 0.00 0.00 4.52
74 75 1.377594 TGCTCGATGTGCTGCCAAT 60.378 52.632 0.00 0.00 0.00 3.16
75 76 1.063649 GCTCGATGTGCTGCCAATG 59.936 57.895 0.00 0.00 0.00 2.82
76 77 1.725665 CTCGATGTGCTGCCAATGG 59.274 57.895 0.00 0.00 0.00 3.16
86 87 4.932789 GCCAATGGCGAGTCAGTA 57.067 55.556 9.14 0.00 39.62 2.74
87 88 2.384203 GCCAATGGCGAGTCAGTAC 58.616 57.895 9.14 0.00 39.62 2.73
88 89 0.391130 GCCAATGGCGAGTCAGTACA 60.391 55.000 9.14 0.00 39.62 2.90
89 90 1.359848 CCAATGGCGAGTCAGTACAC 58.640 55.000 0.00 0.00 0.00 2.90
90 91 1.337728 CCAATGGCGAGTCAGTACACA 60.338 52.381 0.00 0.00 0.00 3.72
91 92 1.726791 CAATGGCGAGTCAGTACACAC 59.273 52.381 0.00 0.00 0.00 3.82
92 93 1.257743 ATGGCGAGTCAGTACACACT 58.742 50.000 0.00 0.00 34.42 3.55
93 94 1.037493 TGGCGAGTCAGTACACACTT 58.963 50.000 0.00 0.00 30.46 3.16
94 95 1.411246 TGGCGAGTCAGTACACACTTT 59.589 47.619 0.00 0.00 30.46 2.66
95 96 2.159014 TGGCGAGTCAGTACACACTTTT 60.159 45.455 0.00 0.00 30.46 2.27
96 97 2.221055 GGCGAGTCAGTACACACTTTTG 59.779 50.000 0.00 0.00 30.46 2.44
97 98 3.120792 GCGAGTCAGTACACACTTTTGA 58.879 45.455 0.00 0.00 30.46 2.69
98 99 3.741344 GCGAGTCAGTACACACTTTTGAT 59.259 43.478 0.00 0.00 30.46 2.57
99 100 4.211374 GCGAGTCAGTACACACTTTTGATT 59.789 41.667 0.00 0.00 30.46 2.57
100 101 5.277345 GCGAGTCAGTACACACTTTTGATTT 60.277 40.000 0.00 0.00 30.46 2.17
101 102 6.715464 CGAGTCAGTACACACTTTTGATTTT 58.285 36.000 0.00 0.00 30.46 1.82
102 103 7.186804 CGAGTCAGTACACACTTTTGATTTTT 58.813 34.615 0.00 0.00 30.46 1.94
122 123 2.853235 TTTCGAGAAGGGGAAAGACC 57.147 50.000 0.00 0.00 38.08 3.85
131 132 3.009714 GGAAAGACCCCGGCCTCT 61.010 66.667 0.00 0.00 0.00 3.69
132 133 2.269241 GAAAGACCCCGGCCTCTG 59.731 66.667 0.00 0.00 0.00 3.35
133 134 3.978571 GAAAGACCCCGGCCTCTGC 62.979 68.421 0.00 0.00 0.00 4.26
136 137 4.115199 GACCCCGGCCTCTGCAAT 62.115 66.667 0.00 0.00 40.13 3.56
152 153 4.696877 TCTGCAATTACACACTTCTGATGG 59.303 41.667 0.00 0.00 0.00 3.51
170 171 6.652481 TCTGATGGAGAAGAAAAACTAAGCAG 59.348 38.462 0.00 0.00 0.00 4.24
176 177 6.693113 GGAGAAGAAAAACTAAGCAGTGTTTG 59.307 38.462 2.00 0.00 41.43 2.93
177 178 7.158099 AGAAGAAAAACTAAGCAGTGTTTGT 57.842 32.000 2.00 0.00 41.43 2.83
186 188 7.806149 ACTAAGCAGTGTTTGTTGTAAAAAC 57.194 32.000 2.00 0.00 37.90 2.43
188 190 7.868415 ACTAAGCAGTGTTTGTTGTAAAAACAA 59.132 29.630 2.00 0.00 46.11 2.83
193 195 7.275560 GCAGTGTTTGTTGTAAAAACAAGAGAT 59.724 33.333 3.49 0.00 46.11 2.75
241 253 7.616935 AGAAGCATTTGAGATTGGGATTAGAAA 59.383 33.333 0.00 0.00 0.00 2.52
255 271 9.901172 TTGGGATTAGAAAGATACTTTTACCTC 57.099 33.333 0.00 0.00 0.00 3.85
281 297 2.163613 GCGGGGTGGAGACTTTTATTTG 59.836 50.000 0.00 0.00 0.00 2.32
299 315 8.655651 TTTATTTGGCGAGAAAACTTTTGATT 57.344 26.923 0.00 0.00 0.00 2.57
307 323 8.375465 GGCGAGAAAACTTTTGATTTATTCATG 58.625 33.333 0.00 0.00 33.34 3.07
399 416 3.179925 CAAGCATTGGAGCCAGCTA 57.820 52.632 3.99 0.00 43.94 3.32
462 487 4.396166 ACACTGTTGTAGCAGATAATTGGC 59.604 41.667 2.66 0.00 39.62 4.52
489 515 1.039233 CATGCAAGGGCCTTGTAGGG 61.039 60.000 38.72 28.48 42.77 3.53
509 536 1.711824 GCGAACGCACCAAAACATTAC 59.288 47.619 14.26 0.00 41.49 1.89
641 669 2.978010 GTGCCCCGACAACACAGG 60.978 66.667 0.00 0.00 34.43 4.00
677 705 3.097614 CCGGTTCCCTCTCTTCTTAAGA 58.902 50.000 0.00 0.00 35.87 2.10
691 719 8.230486 TCTCTTCTTAAGATTTCATGCGTTTTC 58.770 33.333 5.89 0.00 36.82 2.29
692 720 7.305474 TCTTCTTAAGATTTCATGCGTTTTCC 58.695 34.615 5.89 0.00 31.20 3.13
693 721 6.817765 TCTTAAGATTTCATGCGTTTTCCT 57.182 33.333 0.00 0.00 0.00 3.36
694 722 6.842163 TCTTAAGATTTCATGCGTTTTCCTC 58.158 36.000 0.00 0.00 0.00 3.71
738 773 2.823829 CGGCTAATCGCAAGCACCC 61.824 63.158 5.95 0.00 41.93 4.61
766 803 3.383185 TGTTTTCAACGCCATTTTCCTCT 59.617 39.130 0.00 0.00 0.00 3.69
788 826 5.248248 TCTGGGTGAGATAAACACTTGATGA 59.752 40.000 0.00 0.00 38.20 2.92
830 873 4.065789 CTCGAACTTAGAACTTTTGGGCT 58.934 43.478 0.00 0.00 0.00 5.19
866 909 1.529796 GTCACCACCCACCTCAACA 59.470 57.895 0.00 0.00 0.00 3.33
1023 1070 1.492993 GGCAAGGTCACTTCTCCCCT 61.493 60.000 0.00 0.00 33.81 4.79
1024 1071 0.035915 GCAAGGTCACTTCTCCCCTC 60.036 60.000 0.00 0.00 33.81 4.30
1025 1072 1.352083 CAAGGTCACTTCTCCCCTCA 58.648 55.000 0.00 0.00 33.81 3.86
1026 1073 1.277557 CAAGGTCACTTCTCCCCTCAG 59.722 57.143 0.00 0.00 33.81 3.35
1027 1074 0.907230 AGGTCACTTCTCCCCTCAGC 60.907 60.000 0.00 0.00 0.00 4.26
1028 1075 0.907230 GGTCACTTCTCCCCTCAGCT 60.907 60.000 0.00 0.00 0.00 4.24
1029 1076 0.534873 GTCACTTCTCCCCTCAGCTC 59.465 60.000 0.00 0.00 0.00 4.09
1031 1078 0.906756 CACTTCTCCCCTCAGCTCCA 60.907 60.000 0.00 0.00 0.00 3.86
1032 1079 0.907230 ACTTCTCCCCTCAGCTCCAC 60.907 60.000 0.00 0.00 0.00 4.02
1033 1080 1.613630 TTCTCCCCTCAGCTCCACC 60.614 63.158 0.00 0.00 0.00 4.61
1034 1081 3.465403 CTCCCCTCAGCTCCACCG 61.465 72.222 0.00 0.00 0.00 4.94
1071 1118 4.779733 AGTCCATCCCCCGTCGCT 62.780 66.667 0.00 0.00 0.00 4.93
1259 1306 0.242825 GGGGTTTTAGCTTTCGTGCC 59.757 55.000 0.00 0.00 0.00 5.01
1337 1384 3.057350 CGACGAACGCTGTTTTCTAGTAC 59.943 47.826 0.00 0.00 34.51 2.73
1346 1393 6.377712 ACGCTGTTTTCTAGTACTCCTATTCT 59.622 38.462 0.00 0.00 0.00 2.40
1376 1423 1.062002 CGATGCGCGAATTTAGTGGTT 59.938 47.619 12.10 0.00 44.57 3.67
1395 1442 3.376234 GGTTATTTGGGTTTAGCGACTCC 59.624 47.826 0.00 0.00 0.00 3.85
1451 1499 0.968405 TTTGTGCCCCATTTCAGAGC 59.032 50.000 0.00 0.00 0.00 4.09
1523 1571 4.312443 ACACGGTGTTACTACTTTGATGG 58.688 43.478 8.21 0.00 0.00 3.51
1527 1575 4.753107 CGGTGTTACTACTTTGATGGTTGT 59.247 41.667 0.00 0.00 0.00 3.32
1637 1712 3.742433 CTATGGTGGAACTAGAGCCAG 57.258 52.381 8.28 0.00 36.74 4.85
1764 2007 3.782889 ATTGGAATTTTGGACGCTAGC 57.217 42.857 4.06 4.06 0.00 3.42
1871 2114 1.140312 AGGAGACACTTTCTTGGCCA 58.860 50.000 0.00 0.00 33.22 5.36
2023 2266 4.211389 CGCTGCTTTAGTACAACTTTGTG 58.789 43.478 4.82 0.00 42.31 3.33
2207 2490 6.486253 AAATAGTGAATACAGTGCAGTGTG 57.514 37.500 32.67 12.76 31.46 3.82
2227 2512 5.515270 GTGTGCTTTTCCTTTACACAAGTTC 59.485 40.000 0.00 0.00 42.39 3.01
2321 2606 0.532115 GGGGCAATGCATTTCTTCGT 59.468 50.000 9.83 0.00 0.00 3.85
2370 2655 3.193267 TGTTTGCTGCTCAGTGAGTTTTT 59.807 39.130 21.06 0.00 31.39 1.94
2530 2815 3.244181 GCCCAAAAGTCACATCATTTGGT 60.244 43.478 13.33 0.00 46.60 3.67
2688 2974 5.717119 TCCGATAACTTCTTCCTGTTGTAC 58.283 41.667 0.00 0.00 0.00 2.90
2705 2991 5.163227 TGTTGTACCACCACTTACCAACATA 60.163 40.000 0.00 0.00 0.00 2.29
2706 2992 5.155278 TGTACCACCACTTACCAACATAG 57.845 43.478 0.00 0.00 0.00 2.23
2707 2993 3.067684 ACCACCACTTACCAACATAGC 57.932 47.619 0.00 0.00 0.00 2.97
2708 2994 2.642807 ACCACCACTTACCAACATAGCT 59.357 45.455 0.00 0.00 0.00 3.32
2709 2995 3.073946 ACCACCACTTACCAACATAGCTT 59.926 43.478 0.00 0.00 0.00 3.74
2710 2996 3.440173 CCACCACTTACCAACATAGCTTG 59.560 47.826 0.00 0.00 0.00 4.01
2711 2997 4.072131 CACCACTTACCAACATAGCTTGT 58.928 43.478 0.00 0.00 41.53 3.16
2712 2998 5.242434 CACCACTTACCAACATAGCTTGTA 58.758 41.667 0.00 0.00 37.68 2.41
2713 2999 5.121768 CACCACTTACCAACATAGCTTGTAC 59.878 44.000 0.00 0.00 37.68 2.90
2714 3000 5.012768 ACCACTTACCAACATAGCTTGTACT 59.987 40.000 0.00 0.00 37.68 2.73
2715 3001 5.938125 CCACTTACCAACATAGCTTGTACTT 59.062 40.000 0.00 0.00 37.68 2.24
2716 3002 6.430000 CCACTTACCAACATAGCTTGTACTTT 59.570 38.462 0.00 0.00 37.68 2.66
2717 3003 7.298122 CACTTACCAACATAGCTTGTACTTTG 58.702 38.462 0.00 0.00 37.68 2.77
2718 3004 6.996282 ACTTACCAACATAGCTTGTACTTTGT 59.004 34.615 0.00 0.00 37.68 2.83
2719 3005 5.689383 ACCAACATAGCTTGTACTTTGTG 57.311 39.130 0.00 0.00 37.68 3.33
2720 3006 5.130350 ACCAACATAGCTTGTACTTTGTGT 58.870 37.500 0.00 0.00 37.68 3.72
2721 3007 5.008613 ACCAACATAGCTTGTACTTTGTGTG 59.991 40.000 0.00 0.00 37.68 3.82
2724 3217 4.447724 ACATAGCTTGTACTTTGTGTGTCG 59.552 41.667 0.00 0.00 36.57 4.35
2750 3243 6.554334 TTTTATCAGCCACTAAACAGTGTC 57.446 37.500 0.00 0.00 38.07 3.67
2797 3290 8.306038 CAATTTTGGATGTCCTTCATAACTGAA 58.694 33.333 0.09 0.00 39.07 3.02
3027 3520 3.278574 TGGCCAAATAGTTCAAGGATCG 58.721 45.455 0.61 0.00 0.00 3.69
3093 3586 2.265367 TGGAGGGAAGTTACAGCATGA 58.735 47.619 0.00 0.00 39.69 3.07
3476 3969 2.745884 GCGGCTGTGGTGCATGTA 60.746 61.111 0.00 0.00 34.04 2.29
3503 3997 3.272574 TGCATCTTTTGTGCCCAAAAA 57.727 38.095 8.44 1.11 46.80 1.94
3521 4015 5.263185 CAAAAAGAAGAATATGCGGGTACG 58.737 41.667 0.00 0.00 44.63 3.67
3530 4024 2.813908 GCGGGTACGAGCCAACTG 60.814 66.667 0.00 0.00 44.60 3.16
3563 4057 3.814842 TGTTGTGAATCTGTGATGTGTCC 59.185 43.478 0.00 0.00 0.00 4.02
3564 4058 4.067896 GTTGTGAATCTGTGATGTGTCCT 58.932 43.478 0.00 0.00 0.00 3.85
3565 4059 4.356405 TGTGAATCTGTGATGTGTCCTT 57.644 40.909 0.00 0.00 0.00 3.36
3616 4112 5.417580 TGTTCTATTAGGGTGCCACAAATTC 59.582 40.000 0.00 0.00 0.00 2.17
3619 4115 2.507407 TAGGGTGCCACAAATTCCTC 57.493 50.000 0.00 0.00 0.00 3.71
3625 4121 0.039618 GCCACAAATTCCTCCCTGGA 59.960 55.000 0.00 0.00 44.51 3.86
3651 4147 9.899226 AAAGAAAATGTTTTATACAGTGAGCTC 57.101 29.630 6.82 6.82 40.83 4.09
3722 4220 9.578439 CTTCTGAAAAGAAACAAATCAAGACTT 57.422 29.630 0.00 0.00 0.00 3.01
3730 4228 9.927668 AAGAAACAAATCAAGACTTCTTTTGAA 57.072 25.926 19.17 0.00 36.93 2.69
3770 4268 5.538813 TGCTCTTTTCTACTCTACTGGACAA 59.461 40.000 0.00 0.00 0.00 3.18
3838 4348 2.357327 GCACAATGCAGCTGATGAAA 57.643 45.000 20.43 0.00 44.26 2.69
3880 4390 2.225091 ACCAATCCAAGGTGCTTGATGA 60.225 45.455 0.00 0.00 43.42 2.92
3884 4394 4.996788 ATCCAAGGTGCTTGATGATTTC 57.003 40.909 0.00 0.00 43.42 2.17
3889 4399 2.237143 AGGTGCTTGATGATTTCGGAGA 59.763 45.455 0.00 0.00 0.00 3.71
3894 4404 2.602257 TGATGATTTCGGAGATGCGT 57.398 45.000 0.00 0.00 35.04 5.24
3909 4419 5.268118 AGATGCGTTGTATGAAGAGATGA 57.732 39.130 0.00 0.00 0.00 2.92
3916 4426 1.067212 GTATGAAGAGATGACGGGCGT 59.933 52.381 0.00 0.00 0.00 5.68
3919 4429 2.564553 GAAGAGATGACGGGCGTGCT 62.565 60.000 0.00 0.00 0.00 4.40
3920 4430 2.564553 AAGAGATGACGGGCGTGCTC 62.565 60.000 0.00 0.00 0.00 4.26
3936 4451 1.572085 GCTCTTTCGCTGCTGCTTCA 61.572 55.000 14.03 0.00 36.97 3.02
3946 4461 1.227497 GCTGCTTCATCCCGGAGAG 60.227 63.158 0.73 0.00 0.00 3.20
3956 4471 1.152440 CCCGGAGAGGATGCCTACT 60.152 63.158 0.73 0.00 45.00 2.57
3957 4472 0.112606 CCCGGAGAGGATGCCTACTA 59.887 60.000 0.73 0.00 45.00 1.82
3972 4488 2.224475 CCTACTATCTGCTTGGCATGCT 60.224 50.000 23.54 8.58 38.13 3.79
3973 4489 3.007290 CCTACTATCTGCTTGGCATGCTA 59.993 47.826 23.54 9.16 38.13 3.49
4049 4566 1.338973 TCGTGCTACTCAGGTTTTCGT 59.661 47.619 0.00 0.00 32.68 3.85
4050 4567 2.132762 CGTGCTACTCAGGTTTTCGTT 58.867 47.619 0.00 0.00 0.00 3.85
4066 4583 6.368213 GTTTTCGTTCCATGATACTCGTTTT 58.632 36.000 0.00 0.00 0.00 2.43
4111 4628 3.741245 TCCTGGTAGTGCTAGAACTCT 57.259 47.619 6.66 0.00 0.00 3.24
4133 4650 3.797845 TCTATACCTCTTTCCCTCCTCCA 59.202 47.826 0.00 0.00 0.00 3.86
4134 4651 3.508952 ATACCTCTTTCCCTCCTCCAA 57.491 47.619 0.00 0.00 0.00 3.53
4135 4652 1.363246 ACCTCTTTCCCTCCTCCAAC 58.637 55.000 0.00 0.00 0.00 3.77
4136 4653 1.132365 ACCTCTTTCCCTCCTCCAACT 60.132 52.381 0.00 0.00 0.00 3.16
4137 4654 1.557371 CCTCTTTCCCTCCTCCAACTC 59.443 57.143 0.00 0.00 0.00 3.01
4141 4658 3.336997 TCTTTCCCTCCTCCAACTCTCTA 59.663 47.826 0.00 0.00 0.00 2.43
4143 4660 5.195960 TCTTTCCCTCCTCCAACTCTCTATA 59.804 44.000 0.00 0.00 0.00 1.31
4144 4661 4.456662 TCCCTCCTCCAACTCTCTATAC 57.543 50.000 0.00 0.00 0.00 1.47
4145 4662 3.140519 TCCCTCCTCCAACTCTCTATACC 59.859 52.174 0.00 0.00 0.00 2.73
4146 4663 3.141272 CCCTCCTCCAACTCTCTATACCT 59.859 52.174 0.00 0.00 0.00 3.08
4147 4664 4.403734 CCTCCTCCAACTCTCTATACCTC 58.596 52.174 0.00 0.00 0.00 3.85
4148 4665 4.105697 CCTCCTCCAACTCTCTATACCTCT 59.894 50.000 0.00 0.00 0.00 3.69
4149 4666 5.399727 CCTCCTCCAACTCTCTATACCTCTT 60.400 48.000 0.00 0.00 0.00 2.85
4150 4667 6.093617 TCCTCCAACTCTCTATACCTCTTT 57.906 41.667 0.00 0.00 0.00 2.52
4151 4668 6.130569 TCCTCCAACTCTCTATACCTCTTTC 58.869 44.000 0.00 0.00 0.00 2.62
4152 4669 5.303333 CCTCCAACTCTCTATACCTCTTTCC 59.697 48.000 0.00 0.00 0.00 3.13
4153 4670 5.209659 TCCAACTCTCTATACCTCTTTCCC 58.790 45.833 0.00 0.00 0.00 3.97
4154 4671 5.043281 TCCAACTCTCTATACCTCTTTCCCT 60.043 44.000 0.00 0.00 0.00 4.20
4155 4672 5.303333 CCAACTCTCTATACCTCTTTCCCTC 59.697 48.000 0.00 0.00 0.00 4.30
4156 4673 5.069518 ACTCTCTATACCTCTTTCCCTCC 57.930 47.826 0.00 0.00 0.00 4.30
4157 4674 4.735020 ACTCTCTATACCTCTTTCCCTCCT 59.265 45.833 0.00 0.00 0.00 3.69
4158 4675 5.068215 TCTCTATACCTCTTTCCCTCCTG 57.932 47.826 0.00 0.00 0.00 3.86
4159 4676 4.732443 TCTCTATACCTCTTTCCCTCCTGA 59.268 45.833 0.00 0.00 0.00 3.86
4160 4677 4.805744 TCTATACCTCTTTCCCTCCTGAC 58.194 47.826 0.00 0.00 0.00 3.51
4161 4678 3.786213 ATACCTCTTTCCCTCCTGACT 57.214 47.619 0.00 0.00 0.00 3.41
4162 4679 1.945580 ACCTCTTTCCCTCCTGACTC 58.054 55.000 0.00 0.00 0.00 3.36
4163 4680 1.435168 ACCTCTTTCCCTCCTGACTCT 59.565 52.381 0.00 0.00 0.00 3.24
4164 4681 2.158081 ACCTCTTTCCCTCCTGACTCTT 60.158 50.000 0.00 0.00 0.00 2.85
4165 4682 2.909662 CCTCTTTCCCTCCTGACTCTTT 59.090 50.000 0.00 0.00 0.00 2.52
4166 4683 3.055458 CCTCTTTCCCTCCTGACTCTTTC 60.055 52.174 0.00 0.00 0.00 2.62
4167 4684 2.563179 TCTTTCCCTCCTGACTCTTTCG 59.437 50.000 0.00 0.00 0.00 3.46
4168 4685 2.011122 TTCCCTCCTGACTCTTTCGT 57.989 50.000 0.00 0.00 0.00 3.85
4169 4686 2.011122 TCCCTCCTGACTCTTTCGTT 57.989 50.000 0.00 0.00 0.00 3.85
4170 4687 2.326428 TCCCTCCTGACTCTTTCGTTT 58.674 47.619 0.00 0.00 0.00 3.60
4171 4688 2.037251 TCCCTCCTGACTCTTTCGTTTG 59.963 50.000 0.00 0.00 0.00 2.93
4172 4689 2.037251 CCCTCCTGACTCTTTCGTTTGA 59.963 50.000 0.00 0.00 0.00 2.69
4173 4690 3.494398 CCCTCCTGACTCTTTCGTTTGAA 60.494 47.826 0.00 0.00 0.00 2.69
4174 4691 3.495001 CCTCCTGACTCTTTCGTTTGAAC 59.505 47.826 0.00 0.00 32.71 3.18
4175 4692 4.372656 CTCCTGACTCTTTCGTTTGAACT 58.627 43.478 0.00 0.00 32.71 3.01
4176 4693 4.119862 TCCTGACTCTTTCGTTTGAACTG 58.880 43.478 0.00 0.00 32.71 3.16
4177 4694 3.248602 CCTGACTCTTTCGTTTGAACTGG 59.751 47.826 0.00 0.00 32.71 4.00
4178 4695 3.869065 TGACTCTTTCGTTTGAACTGGT 58.131 40.909 0.00 0.00 32.71 4.00
4179 4696 4.258543 TGACTCTTTCGTTTGAACTGGTT 58.741 39.130 0.00 0.00 32.71 3.67
4180 4697 4.698304 TGACTCTTTCGTTTGAACTGGTTT 59.302 37.500 0.00 0.00 32.71 3.27
4181 4698 5.875910 TGACTCTTTCGTTTGAACTGGTTTA 59.124 36.000 0.00 0.00 32.71 2.01
4182 4699 6.540914 TGACTCTTTCGTTTGAACTGGTTTAT 59.459 34.615 0.00 0.00 32.71 1.40
4183 4700 7.066525 TGACTCTTTCGTTTGAACTGGTTTATT 59.933 33.333 0.00 0.00 32.71 1.40
4184 4701 7.768240 ACTCTTTCGTTTGAACTGGTTTATTT 58.232 30.769 0.00 0.00 32.71 1.40
4185 4702 7.913821 ACTCTTTCGTTTGAACTGGTTTATTTC 59.086 33.333 0.00 0.00 32.71 2.17
4186 4703 7.197703 TCTTTCGTTTGAACTGGTTTATTTCC 58.802 34.615 0.00 0.00 32.71 3.13
4187 4704 5.098218 TCGTTTGAACTGGTTTATTTCCG 57.902 39.130 0.00 0.00 0.00 4.30
4188 4705 4.575645 TCGTTTGAACTGGTTTATTTCCGT 59.424 37.500 0.00 0.00 0.00 4.69
4189 4706 5.066246 TCGTTTGAACTGGTTTATTTCCGTT 59.934 36.000 0.00 0.00 0.00 4.44
4190 4707 5.397240 CGTTTGAACTGGTTTATTTCCGTTC 59.603 40.000 0.00 0.00 38.10 3.95
4191 4708 6.500910 GTTTGAACTGGTTTATTTCCGTTCT 58.499 36.000 14.83 0.00 38.25 3.01
4192 4709 6.702716 TTGAACTGGTTTATTTCCGTTCTT 57.297 33.333 14.83 0.00 38.25 2.52
4193 4710 6.702716 TGAACTGGTTTATTTCCGTTCTTT 57.297 33.333 14.83 0.00 38.25 2.52
4194 4711 6.500041 TGAACTGGTTTATTTCCGTTCTTTG 58.500 36.000 14.83 0.00 38.25 2.77
4195 4712 4.866921 ACTGGTTTATTTCCGTTCTTTGC 58.133 39.130 0.00 0.00 0.00 3.68
4196 4713 4.339814 ACTGGTTTATTTCCGTTCTTTGCA 59.660 37.500 0.00 0.00 0.00 4.08
4197 4714 5.163499 ACTGGTTTATTTCCGTTCTTTGCAA 60.163 36.000 0.00 0.00 0.00 4.08
4198 4715 5.848406 TGGTTTATTTCCGTTCTTTGCAAT 58.152 33.333 0.00 0.00 0.00 3.56
4199 4716 5.694006 TGGTTTATTTCCGTTCTTTGCAATG 59.306 36.000 0.00 2.27 0.00 2.82
4200 4717 5.120053 GGTTTATTTCCGTTCTTTGCAATGG 59.880 40.000 11.99 0.24 34.12 3.16
4201 4718 5.713792 TTATTTCCGTTCTTTGCAATGGA 57.286 34.783 11.99 2.80 39.33 3.41
4202 4719 4.599047 ATTTCCGTTCTTTGCAATGGAA 57.401 36.364 11.99 8.84 45.78 3.53
4204 4721 3.641437 TCCGTTCTTTGCAATGGAAAG 57.359 42.857 19.19 19.19 38.33 2.62
4205 4722 2.295909 TCCGTTCTTTGCAATGGAAAGG 59.704 45.455 26.09 26.09 38.33 3.11
4206 4723 2.295909 CCGTTCTTTGCAATGGAAAGGA 59.704 45.455 27.05 15.01 39.66 3.36
4207 4724 3.568538 CGTTCTTTGCAATGGAAAGGAG 58.431 45.455 23.49 13.10 32.26 3.69
4208 4725 3.004734 CGTTCTTTGCAATGGAAAGGAGT 59.995 43.478 23.49 0.00 32.26 3.85
4209 4726 4.215399 CGTTCTTTGCAATGGAAAGGAGTA 59.785 41.667 23.49 5.03 32.26 2.59
4210 4727 5.278266 CGTTCTTTGCAATGGAAAGGAGTAA 60.278 40.000 23.49 10.36 32.26 2.24
4211 4728 6.512297 GTTCTTTGCAATGGAAAGGAGTAAA 58.488 36.000 23.49 10.04 32.26 2.01
4212 4729 6.331369 TCTTTGCAATGGAAAGGAGTAAAG 57.669 37.500 23.49 0.34 34.58 1.85
4213 4730 4.519540 TTGCAATGGAAAGGAGTAAAGC 57.480 40.909 0.00 0.00 0.00 3.51
4214 4731 2.825532 TGCAATGGAAAGGAGTAAAGCC 59.174 45.455 0.00 0.00 0.00 4.35
4215 4732 3.092301 GCAATGGAAAGGAGTAAAGCCT 58.908 45.455 0.00 0.00 37.35 4.58
4216 4733 3.119352 GCAATGGAAAGGAGTAAAGCCTG 60.119 47.826 0.00 0.00 35.50 4.85
4217 4734 2.879103 TGGAAAGGAGTAAAGCCTGG 57.121 50.000 0.00 0.00 35.50 4.45
4218 4735 2.062636 TGGAAAGGAGTAAAGCCTGGT 58.937 47.619 0.00 0.00 35.50 4.00
4219 4736 2.445525 TGGAAAGGAGTAAAGCCTGGTT 59.554 45.455 0.00 0.00 35.50 3.67
4220 4737 3.082548 GGAAAGGAGTAAAGCCTGGTTC 58.917 50.000 0.00 0.00 35.50 3.62
4221 4738 3.244946 GGAAAGGAGTAAAGCCTGGTTCT 60.245 47.826 0.00 0.00 35.50 3.01
4222 4739 4.019591 GGAAAGGAGTAAAGCCTGGTTCTA 60.020 45.833 0.00 0.00 35.50 2.10
4223 4740 4.828072 AAGGAGTAAAGCCTGGTTCTAG 57.172 45.455 0.00 0.00 35.50 2.43
4224 4741 4.062490 AGGAGTAAAGCCTGGTTCTAGA 57.938 45.455 0.00 0.00 33.59 2.43
4225 4742 4.426704 AGGAGTAAAGCCTGGTTCTAGAA 58.573 43.478 0.00 0.00 33.59 2.10
4226 4743 4.844655 AGGAGTAAAGCCTGGTTCTAGAAA 59.155 41.667 6.78 0.00 33.59 2.52
4227 4744 5.309806 AGGAGTAAAGCCTGGTTCTAGAAAA 59.690 40.000 6.78 0.00 33.59 2.29
4228 4745 6.002082 GGAGTAAAGCCTGGTTCTAGAAAAA 58.998 40.000 6.78 0.00 0.00 1.94
4248 4765 6.927294 AAAAAGATGTTCTATTAGGGCTCG 57.073 37.500 0.00 0.00 0.00 5.03
4249 4766 5.871396 AAAGATGTTCTATTAGGGCTCGA 57.129 39.130 0.00 0.00 0.00 4.04
4250 4767 5.461032 AAGATGTTCTATTAGGGCTCGAG 57.539 43.478 8.45 8.45 0.00 4.04
4251 4768 3.829601 AGATGTTCTATTAGGGCTCGAGG 59.170 47.826 15.58 0.00 0.00 4.63
4252 4769 3.308035 TGTTCTATTAGGGCTCGAGGA 57.692 47.619 15.58 0.00 0.00 3.71
4253 4770 2.957006 TGTTCTATTAGGGCTCGAGGAC 59.043 50.000 15.58 0.00 0.00 3.85
4254 4771 2.957006 GTTCTATTAGGGCTCGAGGACA 59.043 50.000 15.58 0.00 0.00 4.02
4255 4772 2.865079 TCTATTAGGGCTCGAGGACAG 58.135 52.381 15.58 0.00 0.00 3.51
4256 4773 1.889829 CTATTAGGGCTCGAGGACAGG 59.110 57.143 15.58 0.00 0.00 4.00
4257 4774 0.261991 ATTAGGGCTCGAGGACAGGA 59.738 55.000 15.58 0.00 0.00 3.86
4258 4775 0.395862 TTAGGGCTCGAGGACAGGAG 60.396 60.000 15.58 0.00 0.00 3.69
4259 4776 1.279749 TAGGGCTCGAGGACAGGAGA 61.280 60.000 15.58 0.00 31.90 3.71
4260 4777 1.456705 GGGCTCGAGGACAGGAGAT 60.457 63.158 15.58 0.00 31.90 2.75
4261 4778 1.045911 GGGCTCGAGGACAGGAGATT 61.046 60.000 15.58 0.00 31.90 2.40
4262 4779 0.827368 GGCTCGAGGACAGGAGATTT 59.173 55.000 15.58 0.00 31.90 2.17
4263 4780 1.202475 GGCTCGAGGACAGGAGATTTC 60.202 57.143 15.58 0.00 31.90 2.17
4264 4781 1.754226 GCTCGAGGACAGGAGATTTCT 59.246 52.381 15.58 0.00 31.90 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.282021 GGTGCCAGATGTATTGTGACAT 58.718 45.455 0.00 0.00 42.82 3.06
6 7 2.617788 GGGTGCCAGATGTATTGTGACA 60.618 50.000 0.00 0.00 0.00 3.58
7 8 2.017049 GGGTGCCAGATGTATTGTGAC 58.983 52.381 0.00 0.00 0.00 3.67
8 9 1.915489 AGGGTGCCAGATGTATTGTGA 59.085 47.619 0.00 0.00 0.00 3.58
9 10 2.019249 CAGGGTGCCAGATGTATTGTG 58.981 52.381 0.00 0.00 0.00 3.33
10 11 1.683011 GCAGGGTGCCAGATGTATTGT 60.683 52.381 0.00 0.00 37.42 2.71
11 12 1.027357 GCAGGGTGCCAGATGTATTG 58.973 55.000 0.00 0.00 37.42 1.90
12 13 0.921896 AGCAGGGTGCCAGATGTATT 59.078 50.000 0.00 0.00 46.52 1.89
13 14 1.696336 CTAGCAGGGTGCCAGATGTAT 59.304 52.381 0.00 0.00 46.52 2.29
14 15 1.123077 CTAGCAGGGTGCCAGATGTA 58.877 55.000 0.00 0.00 46.52 2.29
15 16 1.910722 CTAGCAGGGTGCCAGATGT 59.089 57.895 0.00 0.00 46.52 3.06
16 17 1.525535 GCTAGCAGGGTGCCAGATG 60.526 63.158 10.63 0.00 46.52 2.90
17 18 2.914289 GCTAGCAGGGTGCCAGAT 59.086 61.111 10.63 0.00 46.52 2.90
18 19 3.774528 CGCTAGCAGGGTGCCAGA 61.775 66.667 16.45 0.00 46.52 3.86
19 20 4.845580 CCGCTAGCAGGGTGCCAG 62.846 72.222 16.45 0.00 46.52 4.85
24 25 4.394712 GTGCACCGCTAGCAGGGT 62.395 66.667 23.40 16.98 43.63 4.34
25 26 2.310327 TATGTGCACCGCTAGCAGGG 62.310 60.000 23.40 16.40 43.63 4.45
26 27 0.250038 ATATGTGCACCGCTAGCAGG 60.250 55.000 15.69 18.39 43.63 4.85
27 28 1.586422 AATATGTGCACCGCTAGCAG 58.414 50.000 15.69 5.85 43.63 4.24
28 29 2.159028 TGTAATATGTGCACCGCTAGCA 60.159 45.455 15.69 4.28 40.19 3.49
29 30 2.479837 TGTAATATGTGCACCGCTAGC 58.520 47.619 15.69 4.06 0.00 3.42
30 31 6.968131 AATATGTAATATGTGCACCGCTAG 57.032 37.500 15.69 0.00 38.94 3.42
31 32 7.544217 CACTAATATGTAATATGTGCACCGCTA 59.456 37.037 15.69 3.82 38.94 4.26
32 33 6.368791 CACTAATATGTAATATGTGCACCGCT 59.631 38.462 15.69 1.34 38.94 5.52
33 34 6.534059 CACTAATATGTAATATGTGCACCGC 58.466 40.000 15.69 0.00 38.94 5.68
39 40 9.358872 ACATCGAGCACTAATATGTAATATGTG 57.641 33.333 0.00 0.00 38.94 3.21
40 41 9.358872 CACATCGAGCACTAATATGTAATATGT 57.641 33.333 0.00 0.00 38.94 2.29
41 42 8.323854 GCACATCGAGCACTAATATGTAATATG 58.676 37.037 0.00 0.00 38.94 1.78
42 43 8.253810 AGCACATCGAGCACTAATATGTAATAT 58.746 33.333 0.00 0.00 42.49 1.28
43 44 7.542130 CAGCACATCGAGCACTAATATGTAATA 59.458 37.037 0.00 0.00 0.00 0.98
44 45 6.367149 CAGCACATCGAGCACTAATATGTAAT 59.633 38.462 0.00 0.00 0.00 1.89
45 46 5.691754 CAGCACATCGAGCACTAATATGTAA 59.308 40.000 0.00 0.00 0.00 2.41
46 47 5.222631 CAGCACATCGAGCACTAATATGTA 58.777 41.667 0.00 0.00 0.00 2.29
47 48 4.053983 CAGCACATCGAGCACTAATATGT 58.946 43.478 0.00 0.00 0.00 2.29
48 49 3.120752 GCAGCACATCGAGCACTAATATG 60.121 47.826 0.00 0.00 0.00 1.78
49 50 3.062763 GCAGCACATCGAGCACTAATAT 58.937 45.455 0.00 0.00 0.00 1.28
50 51 2.473816 GCAGCACATCGAGCACTAATA 58.526 47.619 0.00 0.00 0.00 0.98
51 52 1.293924 GCAGCACATCGAGCACTAAT 58.706 50.000 0.00 0.00 0.00 1.73
52 53 0.740868 GGCAGCACATCGAGCACTAA 60.741 55.000 0.00 0.00 0.00 2.24
53 54 1.153568 GGCAGCACATCGAGCACTA 60.154 57.895 0.00 0.00 0.00 2.74
54 55 2.435586 GGCAGCACATCGAGCACT 60.436 61.111 0.00 0.00 0.00 4.40
55 56 1.651240 ATTGGCAGCACATCGAGCAC 61.651 55.000 0.00 0.00 0.00 4.40
56 57 1.377594 ATTGGCAGCACATCGAGCA 60.378 52.632 0.00 0.00 0.00 4.26
57 58 1.063649 CATTGGCAGCACATCGAGC 59.936 57.895 0.00 0.00 0.00 5.03
58 59 1.725665 CCATTGGCAGCACATCGAG 59.274 57.895 0.00 0.00 0.00 4.04
59 60 3.908189 CCATTGGCAGCACATCGA 58.092 55.556 0.00 0.00 0.00 3.59
69 70 0.391130 TGTACTGACTCGCCATTGGC 60.391 55.000 18.10 18.10 46.75 4.52
70 71 1.337728 TGTGTACTGACTCGCCATTGG 60.338 52.381 0.00 0.00 0.00 3.16
71 72 1.726791 GTGTGTACTGACTCGCCATTG 59.273 52.381 0.00 0.00 0.00 2.82
72 73 1.618837 AGTGTGTACTGACTCGCCATT 59.381 47.619 0.00 0.00 35.34 3.16
73 74 1.257743 AGTGTGTACTGACTCGCCAT 58.742 50.000 0.00 0.00 35.34 4.40
74 75 1.037493 AAGTGTGTACTGACTCGCCA 58.963 50.000 0.00 0.00 37.19 5.69
75 76 2.150397 AAAGTGTGTACTGACTCGCC 57.850 50.000 0.00 0.00 37.19 5.54
76 77 3.120792 TCAAAAGTGTGTACTGACTCGC 58.879 45.455 0.00 0.00 37.19 5.03
77 78 5.907197 AATCAAAAGTGTGTACTGACTCG 57.093 39.130 0.00 0.00 37.19 4.18
101 102 3.483421 GGTCTTTCCCCTTCTCGAAAAA 58.517 45.455 0.00 0.00 0.00 1.94
102 103 3.136009 GGTCTTTCCCCTTCTCGAAAA 57.864 47.619 0.00 0.00 0.00 2.29
103 104 2.853235 GGTCTTTCCCCTTCTCGAAA 57.147 50.000 0.00 0.00 0.00 3.46
114 115 3.009714 AGAGGCCGGGGTCTTTCC 61.010 66.667 2.18 0.00 0.00 3.13
115 116 2.269241 CAGAGGCCGGGGTCTTTC 59.731 66.667 2.18 0.00 0.00 2.62
116 117 4.035102 GCAGAGGCCGGGGTCTTT 62.035 66.667 2.18 0.00 0.00 2.52
119 120 2.265467 TAATTGCAGAGGCCGGGGTC 62.265 60.000 2.18 0.00 40.13 4.46
120 121 2.305607 TAATTGCAGAGGCCGGGGT 61.306 57.895 2.18 0.00 40.13 4.95
121 122 1.823899 GTAATTGCAGAGGCCGGGG 60.824 63.158 2.18 0.00 40.13 5.73
122 123 1.077787 TGTAATTGCAGAGGCCGGG 60.078 57.895 2.18 0.00 40.13 5.73
123 124 0.676466 TGTGTAATTGCAGAGGCCGG 60.676 55.000 0.00 0.00 40.13 6.13
124 125 0.447801 GTGTGTAATTGCAGAGGCCG 59.552 55.000 0.00 0.00 40.13 6.13
125 126 1.826385 AGTGTGTAATTGCAGAGGCC 58.174 50.000 0.00 0.00 40.13 5.19
126 127 3.077359 AGAAGTGTGTAATTGCAGAGGC 58.923 45.455 0.00 0.00 41.68 4.70
127 128 4.318332 TCAGAAGTGTGTAATTGCAGAGG 58.682 43.478 0.00 0.00 0.00 3.69
128 129 5.163784 CCATCAGAAGTGTGTAATTGCAGAG 60.164 44.000 0.00 0.00 0.00 3.35
129 130 4.696877 CCATCAGAAGTGTGTAATTGCAGA 59.303 41.667 0.00 0.00 0.00 4.26
130 131 4.696877 TCCATCAGAAGTGTGTAATTGCAG 59.303 41.667 0.00 0.00 0.00 4.41
131 132 4.650734 TCCATCAGAAGTGTGTAATTGCA 58.349 39.130 0.00 0.00 0.00 4.08
132 133 4.937620 TCTCCATCAGAAGTGTGTAATTGC 59.062 41.667 0.00 0.00 0.00 3.56
152 153 7.251281 ACAAACACTGCTTAGTTTTTCTTCTC 58.749 34.615 0.00 0.00 35.90 2.87
241 253 4.941873 CCCGCAAAAGAGGTAAAAGTATCT 59.058 41.667 0.00 0.00 0.00 1.98
251 263 2.115266 CCACCCCGCAAAAGAGGT 59.885 61.111 0.00 0.00 0.00 3.85
255 271 0.537371 AAGTCTCCACCCCGCAAAAG 60.537 55.000 0.00 0.00 0.00 2.27
281 297 7.867445 TGAATAAATCAAAAGTTTTCTCGCC 57.133 32.000 0.00 0.00 34.30 5.54
358 375 3.353557 AGTTGTCGCTAGATGGTCTACA 58.646 45.455 0.00 0.00 0.00 2.74
399 416 2.813908 GACGATGACGGCGCCTTT 60.814 61.111 26.68 11.62 44.46 3.11
462 487 2.879907 CCCTTGCATGGCGACTTG 59.120 61.111 13.15 0.00 38.46 3.16
471 496 1.307647 CCCTACAAGGCCCTTGCAT 59.692 57.895 23.39 7.62 44.43 3.96
484 510 1.508808 TTTTGGTGCGTTCGCCCTAC 61.509 55.000 14.44 6.21 42.19 3.18
489 515 1.711824 GTAATGTTTTGGTGCGTTCGC 59.288 47.619 10.34 10.34 0.00 4.70
501 528 4.969484 AGAAAGTCTCCACCGTAATGTTT 58.031 39.130 0.00 0.00 0.00 2.83
509 536 3.868757 TGTATGAGAAAGTCTCCACCG 57.131 47.619 2.91 0.00 42.73 4.94
620 648 2.110213 TGTTGTCGGGGCACACTC 59.890 61.111 0.00 0.00 0.00 3.51
641 669 2.551270 CGGCAGTTTCAGTGACGC 59.449 61.111 0.00 0.00 43.74 5.19
677 705 6.279882 TCAAAAAGAGGAAAACGCATGAAAT 58.720 32.000 0.00 0.00 0.00 2.17
691 719 5.242393 TGAAAGCCTGATTCTCAAAAAGAGG 59.758 40.000 0.00 0.00 44.81 3.69
692 720 6.323203 TGAAAGCCTGATTCTCAAAAAGAG 57.677 37.500 0.00 0.00 46.14 2.85
693 721 6.684686 CATGAAAGCCTGATTCTCAAAAAGA 58.315 36.000 0.00 0.00 0.00 2.52
694 722 5.347907 GCATGAAAGCCTGATTCTCAAAAAG 59.652 40.000 0.00 0.00 0.00 2.27
766 803 5.491070 CTCATCAAGTGTTTATCTCACCCA 58.509 41.667 0.00 0.00 36.58 4.51
813 852 6.632900 GCCTATCTAGCCCAAAAGTTCTAAGT 60.633 42.308 0.00 0.00 0.00 2.24
816 855 4.102681 GGCCTATCTAGCCCAAAAGTTCTA 59.897 45.833 0.00 0.00 45.16 2.10
817 856 3.117851 GGCCTATCTAGCCCAAAAGTTCT 60.118 47.826 0.00 0.00 45.16 3.01
866 909 2.694109 GGGCCGAGTAGTAATGACTTCT 59.306 50.000 0.00 0.00 36.13 2.85
1259 1306 3.607987 GCGAGCACGGATCGAACG 61.608 66.667 14.25 10.78 44.55 3.95
1337 1384 2.688446 TCGTACAGTGCCAGAATAGGAG 59.312 50.000 0.00 0.00 0.00 3.69
1346 1393 2.813474 GCGCATCGTACAGTGCCA 60.813 61.111 0.30 0.00 38.08 4.92
1376 1423 3.262405 ACAGGAGTCGCTAAACCCAAATA 59.738 43.478 0.00 0.00 0.00 1.40
1415 1463 1.029947 AAAATAAGGTGCTCCCCGCG 61.030 55.000 0.00 0.00 43.27 6.46
1429 1477 3.195396 GCTCTGAAATGGGGCACAAAATA 59.805 43.478 0.00 0.00 0.00 1.40
1451 1499 2.114616 AGTAGATCTGCCCAAGTCCAG 58.885 52.381 5.18 0.00 0.00 3.86
1523 1571 1.875514 TCTTGCTCATCAGTGCACAAC 59.124 47.619 21.04 0.28 43.25 3.32
1527 1575 3.072211 CTCTTTCTTGCTCATCAGTGCA 58.928 45.455 0.00 0.00 42.00 4.57
1637 1712 7.986562 AGGAAAGAGTTATATTCTTTTTCGGC 58.013 34.615 11.77 2.78 43.07 5.54
1764 2007 3.311106 CATGCAAAGCAACAACCTAGTG 58.689 45.455 0.00 0.00 43.62 2.74
1871 2114 8.807948 ATTACAAATGCACTAACCAACTAGAT 57.192 30.769 0.00 0.00 0.00 1.98
1969 2212 5.557576 TTGGATCAGAGGGAATATGTGAG 57.442 43.478 0.00 0.00 0.00 3.51
1977 2220 6.318648 CGTCAATTAATTTGGATCAGAGGGAA 59.681 38.462 0.00 0.00 35.92 3.97
2207 2490 5.891451 ACAGAACTTGTGTAAAGGAAAAGC 58.109 37.500 0.00 0.00 38.99 3.51
2227 2512 3.996150 ACAAACATCTTGAGGCAACAG 57.004 42.857 0.00 0.00 41.41 3.16
2468 2753 8.460831 TTTGTTCAAAACTAAAGAGAACTTGC 57.539 30.769 0.00 0.00 39.33 4.01
2666 2952 4.868734 GGTACAACAGGAAGAAGTTATCGG 59.131 45.833 0.00 0.00 0.00 4.18
2688 2974 3.350219 AGCTATGTTGGTAAGTGGTGG 57.650 47.619 0.00 0.00 0.00 4.61
2705 2991 1.597663 GCGACACACAAAGTACAAGCT 59.402 47.619 0.00 0.00 0.00 3.74
2706 2992 1.329292 TGCGACACACAAAGTACAAGC 59.671 47.619 0.00 0.00 0.00 4.01
2707 2993 3.878086 ATGCGACACACAAAGTACAAG 57.122 42.857 0.00 0.00 0.00 3.16
2708 2994 4.624336 AAATGCGACACACAAAGTACAA 57.376 36.364 0.00 0.00 0.00 2.41
2709 2995 4.624336 AAAATGCGACACACAAAGTACA 57.376 36.364 0.00 0.00 0.00 2.90
2710 2996 6.367421 TGATAAAATGCGACACACAAAGTAC 58.633 36.000 0.00 0.00 0.00 2.73
2711 2997 6.546972 TGATAAAATGCGACACACAAAGTA 57.453 33.333 0.00 0.00 0.00 2.24
2712 2998 5.431420 TGATAAAATGCGACACACAAAGT 57.569 34.783 0.00 0.00 0.00 2.66
2713 2999 4.321745 GCTGATAAAATGCGACACACAAAG 59.678 41.667 0.00 0.00 0.00 2.77
2714 3000 4.225984 GCTGATAAAATGCGACACACAAA 58.774 39.130 0.00 0.00 0.00 2.83
2715 3001 3.365868 GGCTGATAAAATGCGACACACAA 60.366 43.478 0.00 0.00 0.00 3.33
2716 3002 2.161410 GGCTGATAAAATGCGACACACA 59.839 45.455 0.00 0.00 0.00 3.72
2717 3003 2.161410 TGGCTGATAAAATGCGACACAC 59.839 45.455 0.00 0.00 0.00 3.82
2718 3004 2.161410 GTGGCTGATAAAATGCGACACA 59.839 45.455 0.00 0.00 35.90 3.72
2719 3005 2.420022 AGTGGCTGATAAAATGCGACAC 59.580 45.455 0.00 0.00 37.78 3.67
2720 3006 2.710377 AGTGGCTGATAAAATGCGACA 58.290 42.857 0.00 0.00 37.78 4.35
2721 3007 4.875544 TTAGTGGCTGATAAAATGCGAC 57.124 40.909 0.00 0.00 36.04 5.19
2724 3217 5.954335 ACTGTTTAGTGGCTGATAAAATGC 58.046 37.500 0.00 0.00 35.34 3.56
2750 3243 5.155509 TGTAGCAAGCAACTATAAATGCG 57.844 39.130 0.00 0.00 46.98 4.73
2797 3290 6.899393 TGGCACATATTCAGAAAGAACTTT 57.101 33.333 0.00 0.00 39.49 2.66
3027 3520 7.566858 ACATCGCAAAAATACAACTCATTTC 57.433 32.000 0.00 0.00 0.00 2.17
3093 3586 8.584157 TGTAATTATTTGCTCCAACAAATGAGT 58.416 29.630 11.66 6.40 46.84 3.41
3503 3997 2.288273 GCTCGTACCCGCATATTCTTCT 60.288 50.000 0.00 0.00 0.00 2.85
3530 4024 2.710220 TTCACAACACATGCAGATGC 57.290 45.000 0.00 0.00 42.50 3.91
3543 4037 4.356405 AGGACACATCACAGATTCACAA 57.644 40.909 0.00 0.00 0.00 3.33
3563 4057 7.172190 TGTTCTGCTGATCTCTAACAAGAAAAG 59.828 37.037 0.00 0.00 0.00 2.27
3564 4058 6.992123 TGTTCTGCTGATCTCTAACAAGAAAA 59.008 34.615 0.00 0.00 0.00 2.29
3565 4059 6.524734 TGTTCTGCTGATCTCTAACAAGAAA 58.475 36.000 0.00 0.00 0.00 2.52
3598 4094 3.365472 GAGGAATTTGTGGCACCCTAAT 58.635 45.455 16.26 9.31 0.00 1.73
3616 4112 5.551305 AAAACATTTTCTTTCCAGGGAGG 57.449 39.130 0.00 0.00 39.47 4.30
3619 4115 8.585018 ACTGTATAAAACATTTTCTTTCCAGGG 58.415 33.333 0.00 0.00 37.50 4.45
3625 4121 9.899226 GAGCTCACTGTATAAAACATTTTCTTT 57.101 29.630 9.40 0.00 37.50 2.52
3633 4129 4.893608 TGCTGAGCTCACTGTATAAAACA 58.106 39.130 13.74 0.00 36.42 2.83
3647 4143 1.150081 AACAAGTGGCTGCTGAGCT 59.850 52.632 5.83 0.00 45.44 4.09
3661 4157 1.753847 GCCAGCCATATAGCCCAACAA 60.754 52.381 0.00 0.00 0.00 2.83
3670 4166 1.298157 GATTGCGCGCCAGCCATATA 61.298 55.000 30.77 2.53 41.18 0.86
3760 4258 1.550524 TGCTGTAGCCTTGTCCAGTAG 59.449 52.381 0.80 0.00 41.18 2.57
3770 4268 0.617249 AGCTCTCCTTGCTGTAGCCT 60.617 55.000 0.80 0.00 39.56 4.58
3880 4390 3.792401 TCATACAACGCATCTCCGAAAT 58.208 40.909 0.00 0.00 0.00 2.17
3884 4394 2.791560 CTCTTCATACAACGCATCTCCG 59.208 50.000 0.00 0.00 0.00 4.63
3889 4399 3.798878 CGTCATCTCTTCATACAACGCAT 59.201 43.478 0.00 0.00 0.00 4.73
3894 4404 2.481276 CGCCCGTCATCTCTTCATACAA 60.481 50.000 0.00 0.00 0.00 2.41
3926 4436 1.523258 CTCCGGGATGAAGCAGCAG 60.523 63.158 0.00 0.00 0.00 4.24
3936 4451 0.543174 GTAGGCATCCTCTCCGGGAT 60.543 60.000 0.00 0.00 46.02 3.85
3946 4461 2.873649 GCCAAGCAGATAGTAGGCATCC 60.874 54.545 0.00 0.00 41.63 3.51
3951 4466 2.149578 GCATGCCAAGCAGATAGTAGG 58.850 52.381 6.36 0.00 43.65 3.18
3956 4471 2.171237 ACAGTAGCATGCCAAGCAGATA 59.829 45.455 15.66 0.00 43.65 1.98
3957 4472 1.064906 ACAGTAGCATGCCAAGCAGAT 60.065 47.619 15.66 0.00 43.65 2.90
3973 4489 9.561069 AAATCAGACTAAGTATCAAAACACAGT 57.439 29.630 0.00 0.00 0.00 3.55
4009 4526 8.314751 AGCACGACATAAAATCTAGCCTATTAT 58.685 33.333 0.00 0.00 0.00 1.28
4049 4566 5.347635 CGTTCTCAAAACGAGTATCATGGAA 59.652 40.000 4.39 0.00 45.64 3.53
4050 4567 4.862574 CGTTCTCAAAACGAGTATCATGGA 59.137 41.667 4.39 0.00 45.64 3.41
4066 4583 2.094906 CCACCATACTCGTTCGTTCTCA 60.095 50.000 0.00 0.00 0.00 3.27
4069 4586 1.067354 ACCCACCATACTCGTTCGTTC 60.067 52.381 0.00 0.00 0.00 3.95
4070 4587 0.971386 ACCCACCATACTCGTTCGTT 59.029 50.000 0.00 0.00 0.00 3.85
4071 4588 0.971386 AACCCACCATACTCGTTCGT 59.029 50.000 0.00 0.00 0.00 3.85
4075 4592 1.278127 CAGGAAACCCACCATACTCGT 59.722 52.381 0.00 0.00 0.00 4.18
4111 4628 3.797845 TGGAGGAGGGAAAGAGGTATAGA 59.202 47.826 0.00 0.00 0.00 1.98
4133 4650 5.196984 AGGAGGGAAAGAGGTATAGAGAGTT 59.803 44.000 0.00 0.00 0.00 3.01
4134 4651 4.735020 AGGAGGGAAAGAGGTATAGAGAGT 59.265 45.833 0.00 0.00 0.00 3.24
4135 4652 5.076873 CAGGAGGGAAAGAGGTATAGAGAG 58.923 50.000 0.00 0.00 0.00 3.20
4136 4653 4.732443 TCAGGAGGGAAAGAGGTATAGAGA 59.268 45.833 0.00 0.00 0.00 3.10
4137 4654 4.830600 GTCAGGAGGGAAAGAGGTATAGAG 59.169 50.000 0.00 0.00 0.00 2.43
4141 4658 3.273618 AGAGTCAGGAGGGAAAGAGGTAT 59.726 47.826 0.00 0.00 0.00 2.73
4143 4660 1.435168 AGAGTCAGGAGGGAAAGAGGT 59.565 52.381 0.00 0.00 0.00 3.85
4144 4661 2.246091 AGAGTCAGGAGGGAAAGAGG 57.754 55.000 0.00 0.00 0.00 3.69
4145 4662 3.367910 CGAAAGAGTCAGGAGGGAAAGAG 60.368 52.174 0.00 0.00 0.00 2.85
4146 4663 2.563179 CGAAAGAGTCAGGAGGGAAAGA 59.437 50.000 0.00 0.00 0.00 2.52
4147 4664 2.300437 ACGAAAGAGTCAGGAGGGAAAG 59.700 50.000 0.00 0.00 0.00 2.62
4148 4665 2.326428 ACGAAAGAGTCAGGAGGGAAA 58.674 47.619 0.00 0.00 0.00 3.13
4149 4666 2.011122 ACGAAAGAGTCAGGAGGGAA 57.989 50.000 0.00 0.00 0.00 3.97
4150 4667 2.011122 AACGAAAGAGTCAGGAGGGA 57.989 50.000 0.00 0.00 0.00 4.20
4151 4668 2.037251 TCAAACGAAAGAGTCAGGAGGG 59.963 50.000 0.00 0.00 0.00 4.30
4152 4669 3.386768 TCAAACGAAAGAGTCAGGAGG 57.613 47.619 0.00 0.00 0.00 4.30
4153 4670 4.210120 CAGTTCAAACGAAAGAGTCAGGAG 59.790 45.833 0.00 0.00 0.00 3.69
4154 4671 4.119862 CAGTTCAAACGAAAGAGTCAGGA 58.880 43.478 0.00 0.00 0.00 3.86
4155 4672 3.248602 CCAGTTCAAACGAAAGAGTCAGG 59.751 47.826 0.00 0.00 0.00 3.86
4156 4673 3.871594 ACCAGTTCAAACGAAAGAGTCAG 59.128 43.478 0.00 0.00 0.00 3.51
4157 4674 3.869065 ACCAGTTCAAACGAAAGAGTCA 58.131 40.909 0.00 0.00 0.00 3.41
4158 4675 4.877323 AACCAGTTCAAACGAAAGAGTC 57.123 40.909 0.00 0.00 0.00 3.36
4159 4676 6.937436 ATAAACCAGTTCAAACGAAAGAGT 57.063 33.333 0.00 0.00 0.00 3.24
4160 4677 7.378728 GGAAATAAACCAGTTCAAACGAAAGAG 59.621 37.037 0.00 0.00 32.80 2.85
4161 4678 7.197703 GGAAATAAACCAGTTCAAACGAAAGA 58.802 34.615 0.00 0.00 32.80 2.52
4162 4679 6.141685 CGGAAATAAACCAGTTCAAACGAAAG 59.858 38.462 0.00 0.00 32.80 2.62
4163 4680 5.972382 CGGAAATAAACCAGTTCAAACGAAA 59.028 36.000 0.00 0.00 32.80 3.46
4164 4681 5.066246 ACGGAAATAAACCAGTTCAAACGAA 59.934 36.000 0.00 0.00 32.80 3.85
4165 4682 4.575645 ACGGAAATAAACCAGTTCAAACGA 59.424 37.500 0.00 0.00 32.80 3.85
4166 4683 4.851010 ACGGAAATAAACCAGTTCAAACG 58.149 39.130 0.00 0.00 32.80 3.60
4167 4684 6.500910 AGAACGGAAATAAACCAGTTCAAAC 58.499 36.000 4.32 0.00 40.10 2.93
4168 4685 6.702716 AGAACGGAAATAAACCAGTTCAAA 57.297 33.333 4.32 0.00 40.10 2.69
4169 4686 6.702716 AAGAACGGAAATAAACCAGTTCAA 57.297 33.333 4.32 0.00 40.10 2.69
4170 4687 6.500041 CAAAGAACGGAAATAAACCAGTTCA 58.500 36.000 4.32 0.00 40.10 3.18
4171 4688 5.401376 GCAAAGAACGGAAATAAACCAGTTC 59.599 40.000 0.00 0.00 39.11 3.01
4172 4689 5.163499 TGCAAAGAACGGAAATAAACCAGTT 60.163 36.000 0.00 0.00 0.00 3.16
4173 4690 4.339814 TGCAAAGAACGGAAATAAACCAGT 59.660 37.500 0.00 0.00 0.00 4.00
4174 4691 4.865776 TGCAAAGAACGGAAATAAACCAG 58.134 39.130 0.00 0.00 0.00 4.00
4175 4692 4.920640 TGCAAAGAACGGAAATAAACCA 57.079 36.364 0.00 0.00 0.00 3.67
4176 4693 5.120053 CCATTGCAAAGAACGGAAATAAACC 59.880 40.000 1.71 0.00 0.00 3.27
4177 4694 5.923684 TCCATTGCAAAGAACGGAAATAAAC 59.076 36.000 1.71 0.00 0.00 2.01
4178 4695 6.090483 TCCATTGCAAAGAACGGAAATAAA 57.910 33.333 1.71 0.00 0.00 1.40
4179 4696 5.713792 TCCATTGCAAAGAACGGAAATAA 57.286 34.783 1.71 0.00 0.00 1.40
4180 4697 5.713792 TTCCATTGCAAAGAACGGAAATA 57.286 34.783 1.71 0.00 29.82 1.40
4181 4698 4.599047 TTCCATTGCAAAGAACGGAAAT 57.401 36.364 1.71 0.00 29.82 2.17
4182 4699 4.367450 CTTTCCATTGCAAAGAACGGAAA 58.633 39.130 20.04 20.04 39.54 3.13
4183 4700 3.243704 CCTTTCCATTGCAAAGAACGGAA 60.244 43.478 23.23 17.49 32.21 4.30
4184 4701 2.295909 CCTTTCCATTGCAAAGAACGGA 59.704 45.455 23.23 13.69 32.21 4.69
4185 4702 2.295909 TCCTTTCCATTGCAAAGAACGG 59.704 45.455 22.30 22.30 33.34 4.44
4186 4703 3.004734 ACTCCTTTCCATTGCAAAGAACG 59.995 43.478 13.21 11.70 33.34 3.95
4187 4704 4.590850 ACTCCTTTCCATTGCAAAGAAC 57.409 40.909 13.21 0.00 33.34 3.01
4188 4705 6.723298 TTTACTCCTTTCCATTGCAAAGAA 57.277 33.333 1.71 7.23 33.34 2.52
4189 4706 5.278957 GCTTTACTCCTTTCCATTGCAAAGA 60.279 40.000 1.71 0.00 33.34 2.52
4190 4707 4.925646 GCTTTACTCCTTTCCATTGCAAAG 59.074 41.667 1.71 0.00 0.00 2.77
4191 4708 4.262420 GGCTTTACTCCTTTCCATTGCAAA 60.262 41.667 1.71 0.00 0.00 3.68
4192 4709 3.258123 GGCTTTACTCCTTTCCATTGCAA 59.742 43.478 0.00 0.00 0.00 4.08
4193 4710 2.825532 GGCTTTACTCCTTTCCATTGCA 59.174 45.455 0.00 0.00 0.00 4.08
4194 4711 3.092301 AGGCTTTACTCCTTTCCATTGC 58.908 45.455 0.00 0.00 0.00 3.56
4195 4712 3.445096 CCAGGCTTTACTCCTTTCCATTG 59.555 47.826 0.00 0.00 0.00 2.82
4196 4713 3.076032 ACCAGGCTTTACTCCTTTCCATT 59.924 43.478 0.00 0.00 0.00 3.16
4197 4714 2.649816 ACCAGGCTTTACTCCTTTCCAT 59.350 45.455 0.00 0.00 0.00 3.41
4198 4715 2.062636 ACCAGGCTTTACTCCTTTCCA 58.937 47.619 0.00 0.00 0.00 3.53
4199 4716 2.881111 ACCAGGCTTTACTCCTTTCC 57.119 50.000 0.00 0.00 0.00 3.13
4200 4717 4.022413 AGAACCAGGCTTTACTCCTTTC 57.978 45.455 0.00 0.00 0.00 2.62
4201 4718 4.844655 TCTAGAACCAGGCTTTACTCCTTT 59.155 41.667 0.00 0.00 0.00 3.11
4202 4719 4.426704 TCTAGAACCAGGCTTTACTCCTT 58.573 43.478 0.00 0.00 0.00 3.36
4203 4720 4.062490 TCTAGAACCAGGCTTTACTCCT 57.938 45.455 0.00 0.00 0.00 3.69
4204 4721 4.820894 TTCTAGAACCAGGCTTTACTCC 57.179 45.455 0.00 0.00 0.00 3.85
4225 4742 6.650120 TCGAGCCCTAATAGAACATCTTTTT 58.350 36.000 0.00 0.00 0.00 1.94
4226 4743 6.235231 TCGAGCCCTAATAGAACATCTTTT 57.765 37.500 0.00 0.00 0.00 2.27
4227 4744 5.221541 CCTCGAGCCCTAATAGAACATCTTT 60.222 44.000 6.99 0.00 0.00 2.52
4228 4745 4.282195 CCTCGAGCCCTAATAGAACATCTT 59.718 45.833 6.99 0.00 0.00 2.40
4229 4746 3.829601 CCTCGAGCCCTAATAGAACATCT 59.170 47.826 6.99 0.00 0.00 2.90
4230 4747 3.827302 TCCTCGAGCCCTAATAGAACATC 59.173 47.826 6.99 0.00 0.00 3.06
4231 4748 3.574826 GTCCTCGAGCCCTAATAGAACAT 59.425 47.826 6.99 0.00 0.00 2.71
4232 4749 2.957006 GTCCTCGAGCCCTAATAGAACA 59.043 50.000 6.99 0.00 0.00 3.18
4233 4750 2.957006 TGTCCTCGAGCCCTAATAGAAC 59.043 50.000 6.99 0.00 0.00 3.01
4234 4751 3.223435 CTGTCCTCGAGCCCTAATAGAA 58.777 50.000 6.99 0.00 0.00 2.10
4235 4752 2.489255 CCTGTCCTCGAGCCCTAATAGA 60.489 54.545 6.99 0.00 0.00 1.98
4236 4753 1.889829 CCTGTCCTCGAGCCCTAATAG 59.110 57.143 6.99 0.00 0.00 1.73
4237 4754 1.497716 TCCTGTCCTCGAGCCCTAATA 59.502 52.381 6.99 0.00 0.00 0.98
4238 4755 0.261991 TCCTGTCCTCGAGCCCTAAT 59.738 55.000 6.99 0.00 0.00 1.73
4239 4756 0.395862 CTCCTGTCCTCGAGCCCTAA 60.396 60.000 6.99 0.00 0.00 2.69
4240 4757 1.227664 CTCCTGTCCTCGAGCCCTA 59.772 63.158 6.99 0.00 0.00 3.53
4241 4758 1.943730 ATCTCCTGTCCTCGAGCCCT 61.944 60.000 6.99 0.00 0.00 5.19
4242 4759 1.045911 AATCTCCTGTCCTCGAGCCC 61.046 60.000 6.99 0.00 0.00 5.19
4243 4760 0.827368 AAATCTCCTGTCCTCGAGCC 59.173 55.000 6.99 0.00 0.00 4.70
4244 4761 1.754226 AGAAATCTCCTGTCCTCGAGC 59.246 52.381 6.99 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.