Multiple sequence alignment - TraesCS7B01G169500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G169500 chr7B 100.000 3922 0 0 1 3922 240333707 240329786 0.000000e+00 7243.0
1 TraesCS7B01G169500 chr7B 92.138 318 20 3 1 316 264654458 264654772 1.000000e-120 444.0
2 TraesCS7B01G169500 chr7A 94.988 2434 80 16 752 3170 284526117 284528523 0.000000e+00 3781.0
3 TraesCS7B01G169500 chr7A 89.231 65 7 0 2425 2489 706035830 706035766 9.030000e-12 82.4
4 TraesCS7B01G169500 chr7D 96.132 2249 70 6 920 3158 261116261 261114020 0.000000e+00 3655.0
5 TraesCS7B01G169500 chr7D 82.745 765 104 12 3183 3922 129820505 129821266 0.000000e+00 656.0
6 TraesCS7B01G169500 chr7D 88.000 475 51 5 317 791 261116921 261116453 1.230000e-154 556.0
7 TraesCS7B01G169500 chr7D 79.817 763 110 20 3189 3922 115136813 115136066 2.090000e-142 516.0
8 TraesCS7B01G169500 chr7D 96.795 156 5 0 779 934 261116433 261116278 1.080000e-65 261.0
9 TraesCS7B01G169500 chr2B 84.706 765 80 12 3183 3922 26326970 26327722 0.000000e+00 730.0
10 TraesCS7B01G169500 chr2B 82.924 773 99 19 3172 3922 190056546 190057307 0.000000e+00 665.0
11 TraesCS7B01G169500 chr2B 84.195 677 78 9 3270 3922 695779175 695779846 7.150000e-177 630.0
12 TraesCS7B01G169500 chr2B 82.850 414 60 8 317 720 110624891 110624479 1.040000e-95 361.0
13 TraesCS7B01G169500 chr1A 83.620 757 97 14 3189 3920 435396417 435395663 0.000000e+00 686.0
14 TraesCS7B01G169500 chr1A 75.457 383 76 11 351 720 436220011 436219634 1.870000e-38 171.0
15 TraesCS7B01G169500 chr3A 82.399 767 109 8 3182 3922 628309267 628308501 0.000000e+00 645.0
16 TraesCS7B01G169500 chr6B 88.355 541 51 7 3390 3922 142222381 142222917 1.190000e-179 640.0
17 TraesCS7B01G169500 chr5B 82.213 759 101 20 3189 3922 674886942 674886193 1.200000e-174 623.0
18 TraesCS7B01G169500 chr5B 92.381 315 22 2 1 314 73059783 73060096 7.730000e-122 448.0
19 TraesCS7B01G169500 chr5B 90.566 318 28 2 1 317 649938490 649938174 1.690000e-113 420.0
20 TraesCS7B01G169500 chr1B 81.997 761 95 21 3183 3922 141723687 141724426 3.350000e-170 608.0
21 TraesCS7B01G169500 chr1B 91.798 317 24 2 1 316 687722931 687722616 1.290000e-119 440.0
22 TraesCS7B01G169500 chr1B 91.139 316 26 2 2 316 463100898 463101212 1.010000e-115 427.0
23 TraesCS7B01G169500 chr3B 84.509 581 67 11 3353 3922 795811668 795811100 1.590000e-153 553.0
24 TraesCS7B01G169500 chr2A 81.633 588 83 11 3349 3922 715901124 715901700 7.680000e-127 464.0
25 TraesCS7B01G169500 chr4B 92.381 315 22 2 1 314 414766270 414765957 7.730000e-122 448.0
26 TraesCS7B01G169500 chr4B 91.746 315 24 2 1 314 134744090 134744403 1.670000e-118 436.0
27 TraesCS7B01G169500 chr4B 91.509 318 24 3 1 317 414789219 414788904 6.020000e-118 435.0
28 TraesCS7B01G169500 chr4B 91.054 313 26 2 6 317 134731120 134731431 4.690000e-114 422.0
29 TraesCS7B01G169500 chr2D 83.659 410 59 7 317 720 73137308 73136901 2.860000e-101 379.0
30 TraesCS7B01G169500 chr2D 75.243 412 72 19 317 720 344443934 344444323 6.740000e-38 169.0
31 TraesCS7B01G169500 chr6D 73.743 358 74 14 325 670 445719121 445719470 5.320000e-24 122.0
32 TraesCS7B01G169500 chrUn 89.831 59 6 0 2431 2489 293161373 293161315 4.200000e-10 76.8
33 TraesCS7B01G169500 chrUn 86.765 68 9 0 2422 2489 409868750 409868817 4.200000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G169500 chr7B 240329786 240333707 3921 True 7243.000000 7243 100.000000 1 3922 1 chr7B.!!$R1 3921
1 TraesCS7B01G169500 chr7A 284526117 284528523 2406 False 3781.000000 3781 94.988000 752 3170 1 chr7A.!!$F1 2418
2 TraesCS7B01G169500 chr7D 261114020 261116921 2901 True 1490.666667 3655 93.642333 317 3158 3 chr7D.!!$R2 2841
3 TraesCS7B01G169500 chr7D 129820505 129821266 761 False 656.000000 656 82.745000 3183 3922 1 chr7D.!!$F1 739
4 TraesCS7B01G169500 chr7D 115136066 115136813 747 True 516.000000 516 79.817000 3189 3922 1 chr7D.!!$R1 733
5 TraesCS7B01G169500 chr2B 26326970 26327722 752 False 730.000000 730 84.706000 3183 3922 1 chr2B.!!$F1 739
6 TraesCS7B01G169500 chr2B 190056546 190057307 761 False 665.000000 665 82.924000 3172 3922 1 chr2B.!!$F2 750
7 TraesCS7B01G169500 chr2B 695779175 695779846 671 False 630.000000 630 84.195000 3270 3922 1 chr2B.!!$F3 652
8 TraesCS7B01G169500 chr1A 435395663 435396417 754 True 686.000000 686 83.620000 3189 3920 1 chr1A.!!$R1 731
9 TraesCS7B01G169500 chr3A 628308501 628309267 766 True 645.000000 645 82.399000 3182 3922 1 chr3A.!!$R1 740
10 TraesCS7B01G169500 chr6B 142222381 142222917 536 False 640.000000 640 88.355000 3390 3922 1 chr6B.!!$F1 532
11 TraesCS7B01G169500 chr5B 674886193 674886942 749 True 623.000000 623 82.213000 3189 3922 1 chr5B.!!$R2 733
12 TraesCS7B01G169500 chr1B 141723687 141724426 739 False 608.000000 608 81.997000 3183 3922 1 chr1B.!!$F1 739
13 TraesCS7B01G169500 chr3B 795811100 795811668 568 True 553.000000 553 84.509000 3353 3922 1 chr3B.!!$R1 569
14 TraesCS7B01G169500 chr2A 715901124 715901700 576 False 464.000000 464 81.633000 3349 3922 1 chr2A.!!$F1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
453 454 0.034896 GTTGGATCCGGTGACAGTGT 59.965 55.0 7.39 0.0 0.0 3.55 F
1031 1104 0.322546 AGTGTCCCTCGCATTTTCCC 60.323 55.0 0.00 0.0 0.0 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2291 2372 0.041576 TGTTCGACGTCGTCTCTGTG 60.042 55.000 34.4 7.16 40.80 3.66 R
2977 3058 1.207329 AGCACGAGAGGGGAAATGTAC 59.793 52.381 0.0 0.00 32.68 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.497437 TCTTTTGTTTCTTAAGTTAACCCGC 58.503 36.000 15.61 0.00 0.00 6.13
26 27 4.834357 TTGTTTCTTAAGTTAACCCGCC 57.166 40.909 15.61 0.00 0.00 6.13
27 28 2.807392 TGTTTCTTAAGTTAACCCGCCG 59.193 45.455 15.61 0.00 0.00 6.46
28 29 1.441738 TTCTTAAGTTAACCCGCCGC 58.558 50.000 0.88 0.00 0.00 6.53
29 30 0.391528 TCTTAAGTTAACCCGCCGCC 60.392 55.000 0.88 0.00 0.00 6.13
30 31 1.698714 CTTAAGTTAACCCGCCGCCG 61.699 60.000 0.88 0.00 0.00 6.46
42 43 4.016706 CCGCCGGGTCTCACCTTT 62.017 66.667 2.18 0.00 38.64 3.11
43 44 2.652095 CCGCCGGGTCTCACCTTTA 61.652 63.158 2.18 0.00 38.64 1.85
44 45 1.520666 CGCCGGGTCTCACCTTTAT 59.479 57.895 2.18 0.00 38.64 1.40
45 46 0.748450 CGCCGGGTCTCACCTTTATA 59.252 55.000 2.18 0.00 38.64 0.98
46 47 1.343465 CGCCGGGTCTCACCTTTATAT 59.657 52.381 2.18 0.00 38.64 0.86
47 48 2.559668 CGCCGGGTCTCACCTTTATATA 59.440 50.000 2.18 0.00 38.64 0.86
48 49 3.613432 CGCCGGGTCTCACCTTTATATAC 60.613 52.174 2.18 0.00 38.64 1.47
49 50 3.322828 GCCGGGTCTCACCTTTATATACA 59.677 47.826 2.18 0.00 38.64 2.29
50 51 4.798593 GCCGGGTCTCACCTTTATATACAC 60.799 50.000 2.18 0.00 38.64 2.90
51 52 4.342951 CCGGGTCTCACCTTTATATACACA 59.657 45.833 0.00 0.00 38.64 3.72
52 53 5.509163 CCGGGTCTCACCTTTATATACACAG 60.509 48.000 0.00 0.00 38.64 3.66
53 54 5.509163 CGGGTCTCACCTTTATATACACAGG 60.509 48.000 0.00 1.66 38.64 4.00
54 55 5.365895 GGGTCTCACCTTTATATACACAGGT 59.634 44.000 2.70 2.70 40.50 4.00
55 56 6.126854 GGGTCTCACCTTTATATACACAGGTT 60.127 42.308 5.14 0.00 37.56 3.50
56 57 6.761714 GGTCTCACCTTTATATACACAGGTTG 59.238 42.308 5.14 3.19 37.56 3.77
57 58 7.364408 GGTCTCACCTTTATATACACAGGTTGA 60.364 40.741 5.14 4.88 37.56 3.18
58 59 7.707035 GTCTCACCTTTATATACACAGGTTGAG 59.293 40.741 16.78 16.78 37.56 3.02
59 60 6.884832 TCACCTTTATATACACAGGTTGAGG 58.115 40.000 5.14 0.00 37.56 3.86
60 61 5.527582 CACCTTTATATACACAGGTTGAGGC 59.472 44.000 5.14 0.00 37.56 4.70
61 62 5.063880 CCTTTATATACACAGGTTGAGGCC 58.936 45.833 0.00 0.00 0.00 5.19
62 63 5.163195 CCTTTATATACACAGGTTGAGGCCT 60.163 44.000 3.86 3.86 39.99 5.19
63 64 6.042781 CCTTTATATACACAGGTTGAGGCCTA 59.957 42.308 4.42 0.00 37.04 3.93
64 65 4.957684 ATATACACAGGTTGAGGCCTAC 57.042 45.455 4.42 0.00 37.04 3.18
65 66 0.892755 TACACAGGTTGAGGCCTACG 59.107 55.000 4.42 0.00 37.04 3.51
66 67 1.079127 CACAGGTTGAGGCCTACGG 60.079 63.158 4.42 0.00 37.04 4.02
77 78 3.644774 GCCTACGGCTTACAGAGTC 57.355 57.895 0.00 0.00 46.69 3.36
78 79 0.102663 GCCTACGGCTTACAGAGTCC 59.897 60.000 0.00 0.00 46.69 3.85
79 80 0.745468 CCTACGGCTTACAGAGTCCC 59.255 60.000 0.00 0.00 0.00 4.46
80 81 0.381089 CTACGGCTTACAGAGTCCCG 59.619 60.000 2.20 2.20 0.00 5.14
81 82 1.033746 TACGGCTTACAGAGTCCCGG 61.034 60.000 0.00 0.00 0.00 5.73
82 83 2.348888 CGGCTTACAGAGTCCCGGT 61.349 63.158 0.00 0.00 0.00 5.28
83 84 1.516423 GGCTTACAGAGTCCCGGTC 59.484 63.158 0.00 0.00 0.00 4.79
84 85 1.139095 GCTTACAGAGTCCCGGTCG 59.861 63.158 0.00 0.00 0.00 4.79
85 86 1.807886 CTTACAGAGTCCCGGTCGG 59.192 63.158 0.00 1.86 0.00 4.79
86 87 2.280823 CTTACAGAGTCCCGGTCGGC 62.281 65.000 0.00 0.00 0.00 5.54
87 88 2.776370 TTACAGAGTCCCGGTCGGCT 62.776 60.000 0.00 0.00 0.00 5.52
88 89 3.827898 CAGAGTCCCGGTCGGCTC 61.828 72.222 0.00 1.80 35.92 4.70
89 90 4.361971 AGAGTCCCGGTCGGCTCA 62.362 66.667 13.81 0.00 37.29 4.26
90 91 4.131088 GAGTCCCGGTCGGCTCAC 62.131 72.222 7.38 0.55 35.81 3.51
91 92 4.988716 AGTCCCGGTCGGCTCACA 62.989 66.667 0.00 0.00 0.00 3.58
92 93 4.736896 GTCCCGGTCGGCTCACAC 62.737 72.222 0.00 0.00 0.00 3.82
94 95 4.308458 CCCGGTCGGCTCACACAA 62.308 66.667 0.00 0.00 0.00 3.33
95 96 3.041940 CCGGTCGGCTCACACAAC 61.042 66.667 0.00 0.00 0.00 3.32
96 97 3.403057 CGGTCGGCTCACACAACG 61.403 66.667 0.00 0.00 0.00 4.10
97 98 2.279918 GGTCGGCTCACACAACGT 60.280 61.111 0.00 0.00 0.00 3.99
106 107 4.438346 ACACAACGTGACCAGCTC 57.562 55.556 0.24 0.00 36.96 4.09
107 108 1.591594 ACACAACGTGACCAGCTCG 60.592 57.895 0.24 0.00 36.96 5.03
108 109 2.029073 ACAACGTGACCAGCTCGG 59.971 61.111 0.00 1.16 37.78 4.63
120 121 2.489971 CCAGCTCGGTTTCTAACAACA 58.510 47.619 0.00 0.00 0.00 3.33
121 122 2.223377 CCAGCTCGGTTTCTAACAACAC 59.777 50.000 0.00 0.00 0.00 3.32
122 123 3.131396 CAGCTCGGTTTCTAACAACACT 58.869 45.455 0.00 0.00 0.00 3.55
123 124 3.560068 CAGCTCGGTTTCTAACAACACTT 59.440 43.478 0.00 0.00 0.00 3.16
124 125 3.560068 AGCTCGGTTTCTAACAACACTTG 59.440 43.478 0.00 0.00 0.00 3.16
125 126 3.848554 GCTCGGTTTCTAACAACACTTGC 60.849 47.826 0.00 0.00 0.00 4.01
126 127 2.614983 TCGGTTTCTAACAACACTTGCC 59.385 45.455 0.00 0.00 0.00 4.52
127 128 2.616842 CGGTTTCTAACAACACTTGCCT 59.383 45.455 0.00 0.00 0.00 4.75
128 129 3.066203 CGGTTTCTAACAACACTTGCCTT 59.934 43.478 0.00 0.00 0.00 4.35
129 130 4.359706 GGTTTCTAACAACACTTGCCTTG 58.640 43.478 0.00 0.00 0.00 3.61
130 131 3.708563 TTCTAACAACACTTGCCTTGC 57.291 42.857 0.00 0.00 0.00 4.01
131 132 2.649190 TCTAACAACACTTGCCTTGCA 58.351 42.857 0.00 0.00 36.47 4.08
132 133 3.221771 TCTAACAACACTTGCCTTGCAT 58.778 40.909 0.00 0.00 38.76 3.96
133 134 4.393834 TCTAACAACACTTGCCTTGCATA 58.606 39.130 0.00 0.00 38.76 3.14
134 135 4.824537 TCTAACAACACTTGCCTTGCATAA 59.175 37.500 0.00 0.00 38.76 1.90
135 136 3.369546 ACAACACTTGCCTTGCATAAC 57.630 42.857 0.00 0.00 38.76 1.89
136 137 2.692557 ACAACACTTGCCTTGCATAACA 59.307 40.909 0.00 0.00 38.76 2.41
137 138 3.131933 ACAACACTTGCCTTGCATAACAA 59.868 39.130 0.00 0.00 38.76 2.83
152 153 6.261859 TGCATAACAAGTTAAACATATGGCG 58.738 36.000 7.80 0.00 0.00 5.69
153 154 5.685511 GCATAACAAGTTAAACATATGGCGG 59.314 40.000 7.80 0.00 0.00 6.13
154 155 3.775661 ACAAGTTAAACATATGGCGGC 57.224 42.857 7.80 0.00 0.00 6.53
155 156 3.352648 ACAAGTTAAACATATGGCGGCT 58.647 40.909 11.43 0.00 0.00 5.52
156 157 3.761752 ACAAGTTAAACATATGGCGGCTT 59.238 39.130 11.43 6.56 0.00 4.35
157 158 4.944930 ACAAGTTAAACATATGGCGGCTTA 59.055 37.500 11.43 9.02 0.00 3.09
158 159 5.592688 ACAAGTTAAACATATGGCGGCTTAT 59.407 36.000 11.43 11.23 0.00 1.73
159 160 5.941948 AGTTAAACATATGGCGGCTTATC 57.058 39.130 11.43 1.00 0.00 1.75
160 161 4.760204 AGTTAAACATATGGCGGCTTATCC 59.240 41.667 11.43 0.00 0.00 2.59
161 162 2.200373 AACATATGGCGGCTTATCCC 57.800 50.000 11.43 0.00 0.00 3.85
162 163 1.362224 ACATATGGCGGCTTATCCCT 58.638 50.000 11.43 0.00 0.00 4.20
163 164 1.705186 ACATATGGCGGCTTATCCCTT 59.295 47.619 11.43 0.00 0.00 3.95
164 165 2.108250 ACATATGGCGGCTTATCCCTTT 59.892 45.455 11.43 0.00 0.00 3.11
165 166 2.270352 TATGGCGGCTTATCCCTTTG 57.730 50.000 11.43 0.00 0.00 2.77
166 167 0.468029 ATGGCGGCTTATCCCTTTGG 60.468 55.000 11.43 0.00 0.00 3.28
167 168 1.828224 GGCGGCTTATCCCTTTGGG 60.828 63.158 0.00 0.00 46.11 4.12
168 169 2.490148 GCGGCTTATCCCTTTGGGC 61.490 63.158 0.00 0.00 43.94 5.36
169 170 1.828224 CGGCTTATCCCTTTGGGCC 60.828 63.158 0.00 0.00 43.94 5.80
170 171 1.457643 GGCTTATCCCTTTGGGCCC 60.458 63.158 17.59 17.59 43.94 5.80
171 172 1.620818 GCTTATCCCTTTGGGCCCT 59.379 57.895 25.70 2.29 43.94 5.19
172 173 0.850784 GCTTATCCCTTTGGGCCCTA 59.149 55.000 25.70 14.07 43.94 3.53
173 174 1.216930 GCTTATCCCTTTGGGCCCTAA 59.783 52.381 25.70 21.62 43.94 2.69
174 175 2.753168 GCTTATCCCTTTGGGCCCTAAG 60.753 54.545 32.14 32.14 43.94 2.18
175 176 2.296943 TATCCCTTTGGGCCCTAAGT 57.703 50.000 34.60 23.31 43.94 2.24
176 177 0.927029 ATCCCTTTGGGCCCTAAGTC 59.073 55.000 34.60 6.36 43.94 3.01
177 178 1.077716 CCCTTTGGGCCCTAAGTCG 60.078 63.158 34.60 24.02 35.35 4.18
178 179 1.749258 CCTTTGGGCCCTAAGTCGC 60.749 63.158 34.60 4.88 0.00 5.19
179 180 1.749258 CTTTGGGCCCTAAGTCGCC 60.749 63.158 31.13 0.25 44.92 5.54
180 181 2.198304 CTTTGGGCCCTAAGTCGCCT 62.198 60.000 31.13 0.00 45.01 5.52
181 182 2.193087 TTTGGGCCCTAAGTCGCCTC 62.193 60.000 25.70 0.00 45.01 4.70
182 183 3.862991 GGGCCCTAAGTCGCCTCC 61.863 72.222 17.04 0.00 45.01 4.30
183 184 4.222847 GGCCCTAAGTCGCCTCCG 62.223 72.222 0.00 0.00 42.21 4.63
184 185 4.222847 GCCCTAAGTCGCCTCCGG 62.223 72.222 0.00 0.00 34.56 5.14
185 186 3.537874 CCCTAAGTCGCCTCCGGG 61.538 72.222 0.00 0.00 34.56 5.73
186 187 2.758737 CCTAAGTCGCCTCCGGGT 60.759 66.667 0.00 0.00 34.56 5.28
187 188 2.783288 CCTAAGTCGCCTCCGGGTC 61.783 68.421 0.00 0.00 34.56 4.46
188 189 1.753463 CTAAGTCGCCTCCGGGTCT 60.753 63.158 0.00 0.00 34.56 3.85
189 190 1.304713 TAAGTCGCCTCCGGGTCTT 60.305 57.895 0.00 0.00 34.56 3.01
190 191 1.601419 TAAGTCGCCTCCGGGTCTTG 61.601 60.000 0.00 0.00 34.56 3.02
191 192 4.452733 GTCGCCTCCGGGTCTTGG 62.453 72.222 0.00 0.00 34.56 3.61
196 197 3.330720 CTCCGGGTCTTGGGCCTT 61.331 66.667 4.53 0.00 0.00 4.35
197 198 3.327404 TCCGGGTCTTGGGCCTTC 61.327 66.667 4.53 0.00 0.00 3.46
198 199 3.646715 CCGGGTCTTGGGCCTTCA 61.647 66.667 4.53 0.00 0.00 3.02
199 200 2.434331 CGGGTCTTGGGCCTTCAA 59.566 61.111 4.53 0.00 0.00 2.69
200 201 1.000896 CGGGTCTTGGGCCTTCAAT 60.001 57.895 4.53 0.00 0.00 2.57
201 202 0.254747 CGGGTCTTGGGCCTTCAATA 59.745 55.000 4.53 0.00 0.00 1.90
202 203 1.340600 CGGGTCTTGGGCCTTCAATAA 60.341 52.381 4.53 0.00 0.00 1.40
203 204 2.379005 GGGTCTTGGGCCTTCAATAAG 58.621 52.381 4.53 0.00 0.00 1.73
204 205 1.751351 GGTCTTGGGCCTTCAATAAGC 59.249 52.381 4.53 0.00 0.00 3.09
205 206 2.621668 GGTCTTGGGCCTTCAATAAGCT 60.622 50.000 4.53 0.00 0.00 3.74
206 207 3.092301 GTCTTGGGCCTTCAATAAGCTT 58.908 45.455 4.53 3.48 0.00 3.74
207 208 3.091545 TCTTGGGCCTTCAATAAGCTTG 58.908 45.455 9.86 0.00 0.00 4.01
208 209 1.185315 TGGGCCTTCAATAAGCTTGC 58.815 50.000 9.86 1.18 0.00 4.01
209 210 1.272648 TGGGCCTTCAATAAGCTTGCT 60.273 47.619 9.86 0.00 0.00 3.91
210 211 1.827344 GGGCCTTCAATAAGCTTGCTT 59.173 47.619 9.86 12.65 0.00 3.91
211 212 2.159184 GGGCCTTCAATAAGCTTGCTTC 60.159 50.000 9.86 0.00 0.00 3.86
212 213 2.493278 GGCCTTCAATAAGCTTGCTTCA 59.507 45.455 9.86 0.00 0.00 3.02
213 214 3.056607 GGCCTTCAATAAGCTTGCTTCAA 60.057 43.478 9.86 0.00 0.00 2.69
214 215 4.171754 GCCTTCAATAAGCTTGCTTCAAG 58.828 43.478 9.86 4.83 43.57 3.02
215 216 4.082571 GCCTTCAATAAGCTTGCTTCAAGA 60.083 41.667 9.86 5.47 43.42 3.02
216 217 5.565439 GCCTTCAATAAGCTTGCTTCAAGAA 60.565 40.000 9.86 11.96 43.42 2.52
217 218 5.860716 CCTTCAATAAGCTTGCTTCAAGAAC 59.139 40.000 9.86 0.00 43.42 3.01
218 219 5.376854 TCAATAAGCTTGCTTCAAGAACC 57.623 39.130 9.86 0.00 43.42 3.62
219 220 4.083324 TCAATAAGCTTGCTTCAAGAACCG 60.083 41.667 9.86 0.00 43.42 4.44
220 221 0.312102 AAGCTTGCTTCAAGAACCGC 59.688 50.000 10.44 0.00 43.42 5.68
221 222 1.081175 GCTTGCTTCAAGAACCGCC 60.081 57.895 10.44 0.00 43.42 6.13
222 223 1.795170 GCTTGCTTCAAGAACCGCCA 61.795 55.000 10.44 0.00 43.42 5.69
223 224 0.883833 CTTGCTTCAAGAACCGCCAT 59.116 50.000 0.50 0.00 43.42 4.40
224 225 0.881118 TTGCTTCAAGAACCGCCATC 59.119 50.000 0.00 0.00 0.00 3.51
225 226 0.036732 TGCTTCAAGAACCGCCATCT 59.963 50.000 0.00 0.00 0.00 2.90
226 227 1.168714 GCTTCAAGAACCGCCATCTT 58.831 50.000 0.00 0.00 37.62 2.40
227 228 1.131315 GCTTCAAGAACCGCCATCTTC 59.869 52.381 0.00 0.00 34.99 2.87
228 229 2.426522 CTTCAAGAACCGCCATCTTCA 58.573 47.619 0.00 0.00 34.99 3.02
229 230 1.808411 TCAAGAACCGCCATCTTCAC 58.192 50.000 0.00 0.00 34.99 3.18
230 231 1.071542 TCAAGAACCGCCATCTTCACA 59.928 47.619 0.00 0.00 34.99 3.58
231 232 2.086869 CAAGAACCGCCATCTTCACAT 58.913 47.619 0.00 0.00 34.99 3.21
232 233 2.029838 AGAACCGCCATCTTCACATC 57.970 50.000 0.00 0.00 0.00 3.06
233 234 1.556911 AGAACCGCCATCTTCACATCT 59.443 47.619 0.00 0.00 0.00 2.90
234 235 2.026822 AGAACCGCCATCTTCACATCTT 60.027 45.455 0.00 0.00 0.00 2.40
235 236 1.742761 ACCGCCATCTTCACATCTTG 58.257 50.000 0.00 0.00 0.00 3.02
236 237 1.019673 CCGCCATCTTCACATCTTGG 58.980 55.000 0.00 0.00 0.00 3.61
237 238 1.019673 CGCCATCTTCACATCTTGGG 58.980 55.000 0.00 0.00 0.00 4.12
238 239 0.743097 GCCATCTTCACATCTTGGGC 59.257 55.000 0.00 0.00 0.00 5.36
239 240 1.684248 GCCATCTTCACATCTTGGGCT 60.684 52.381 0.00 0.00 37.22 5.19
240 241 2.731572 CCATCTTCACATCTTGGGCTT 58.268 47.619 0.00 0.00 0.00 4.35
241 242 2.686915 CCATCTTCACATCTTGGGCTTC 59.313 50.000 0.00 0.00 0.00 3.86
242 243 3.618351 CATCTTCACATCTTGGGCTTCT 58.382 45.455 0.00 0.00 0.00 2.85
243 244 3.795688 TCTTCACATCTTGGGCTTCTT 57.204 42.857 0.00 0.00 0.00 2.52
244 245 3.679389 TCTTCACATCTTGGGCTTCTTC 58.321 45.455 0.00 0.00 0.00 2.87
245 246 3.072915 TCTTCACATCTTGGGCTTCTTCA 59.927 43.478 0.00 0.00 0.00 3.02
246 247 3.726557 TCACATCTTGGGCTTCTTCAT 57.273 42.857 0.00 0.00 0.00 2.57
247 248 3.614092 TCACATCTTGGGCTTCTTCATC 58.386 45.455 0.00 0.00 0.00 2.92
248 249 3.265221 TCACATCTTGGGCTTCTTCATCT 59.735 43.478 0.00 0.00 0.00 2.90
249 250 4.015084 CACATCTTGGGCTTCTTCATCTT 58.985 43.478 0.00 0.00 0.00 2.40
250 251 4.015084 ACATCTTGGGCTTCTTCATCTTG 58.985 43.478 0.00 0.00 0.00 3.02
251 252 4.263639 ACATCTTGGGCTTCTTCATCTTGA 60.264 41.667 0.00 0.00 0.00 3.02
252 253 3.947868 TCTTGGGCTTCTTCATCTTGAG 58.052 45.455 0.00 0.00 0.00 3.02
253 254 3.328931 TCTTGGGCTTCTTCATCTTGAGT 59.671 43.478 0.00 0.00 0.00 3.41
254 255 3.340814 TGGGCTTCTTCATCTTGAGTC 57.659 47.619 0.00 0.00 0.00 3.36
255 256 2.275318 GGGCTTCTTCATCTTGAGTCG 58.725 52.381 0.00 0.00 0.00 4.18
256 257 1.663135 GGCTTCTTCATCTTGAGTCGC 59.337 52.381 0.00 0.00 0.00 5.19
257 258 1.663135 GCTTCTTCATCTTGAGTCGCC 59.337 52.381 0.00 0.00 0.00 5.54
258 259 2.275318 CTTCTTCATCTTGAGTCGCCC 58.725 52.381 0.00 0.00 0.00 6.13
259 260 0.173481 TCTTCATCTTGAGTCGCCCG 59.827 55.000 0.00 0.00 0.00 6.13
260 261 0.108615 CTTCATCTTGAGTCGCCCGT 60.109 55.000 0.00 0.00 0.00 5.28
261 262 1.134367 CTTCATCTTGAGTCGCCCGTA 59.866 52.381 0.00 0.00 0.00 4.02
262 263 0.738975 TCATCTTGAGTCGCCCGTAG 59.261 55.000 0.00 0.00 0.00 3.51
263 264 0.872021 CATCTTGAGTCGCCCGTAGC 60.872 60.000 0.00 0.00 38.52 3.58
264 265 1.320344 ATCTTGAGTCGCCCGTAGCA 61.320 55.000 0.00 0.00 44.04 3.49
265 266 1.141881 CTTGAGTCGCCCGTAGCAT 59.858 57.895 0.00 0.00 44.04 3.79
266 267 1.148157 CTTGAGTCGCCCGTAGCATG 61.148 60.000 0.00 0.00 44.04 4.06
267 268 1.600511 TTGAGTCGCCCGTAGCATGA 61.601 55.000 0.00 0.00 44.04 3.07
268 269 1.589196 GAGTCGCCCGTAGCATGAC 60.589 63.158 0.00 0.00 44.04 3.06
269 270 2.585247 GTCGCCCGTAGCATGACC 60.585 66.667 0.00 0.00 44.04 4.02
270 271 3.845259 TCGCCCGTAGCATGACCC 61.845 66.667 0.00 0.00 44.04 4.46
272 273 3.845259 GCCCGTAGCATGACCCGA 61.845 66.667 0.00 0.00 42.97 5.14
273 274 2.106332 CCCGTAGCATGACCCGAC 59.894 66.667 0.00 0.00 0.00 4.79
274 275 2.106332 CCGTAGCATGACCCGACC 59.894 66.667 0.00 0.00 0.00 4.79
275 276 2.106332 CGTAGCATGACCCGACCC 59.894 66.667 0.00 0.00 0.00 4.46
276 277 2.504519 GTAGCATGACCCGACCCC 59.495 66.667 0.00 0.00 0.00 4.95
277 278 2.766651 TAGCATGACCCGACCCCC 60.767 66.667 0.00 0.00 0.00 5.40
278 279 3.326385 TAGCATGACCCGACCCCCT 62.326 63.158 0.00 0.00 0.00 4.79
279 280 4.176752 GCATGACCCGACCCCCTC 62.177 72.222 0.00 0.00 0.00 4.30
280 281 3.480133 CATGACCCGACCCCCTCC 61.480 72.222 0.00 0.00 0.00 4.30
281 282 3.695825 ATGACCCGACCCCCTCCT 61.696 66.667 0.00 0.00 0.00 3.69
282 283 4.715130 TGACCCGACCCCCTCCTG 62.715 72.222 0.00 0.00 0.00 3.86
293 294 2.445845 CCTCCTGGGCGGGTCATA 60.446 66.667 0.00 0.00 0.00 2.15
294 295 2.808206 CCTCCTGGGCGGGTCATAC 61.808 68.421 0.00 0.00 0.00 2.39
295 296 3.151710 TCCTGGGCGGGTCATACG 61.152 66.667 0.00 0.00 0.00 3.06
296 297 3.467226 CCTGGGCGGGTCATACGT 61.467 66.667 0.00 0.00 0.00 3.57
297 298 2.129146 CCTGGGCGGGTCATACGTA 61.129 63.158 0.00 0.00 0.00 3.57
298 299 1.362717 CTGGGCGGGTCATACGTAG 59.637 63.158 0.08 0.00 0.00 3.51
338 339 2.498885 GACCCGAGTTGGTTATACCTGT 59.501 50.000 0.00 0.00 39.24 4.00
344 345 4.570772 CGAGTTGGTTATACCTGTCAATGG 59.429 45.833 0.00 0.00 39.58 3.16
368 369 6.292008 GGCGATATTAAGTCGTTACCTTGTTC 60.292 42.308 12.74 0.00 40.98 3.18
387 388 4.023536 TGTTCAAGGTATTGCTCGGTTTTC 60.024 41.667 0.00 0.00 36.30 2.29
390 391 2.987232 AGGTATTGCTCGGTTTTCCTC 58.013 47.619 0.00 0.00 37.95 3.71
392 393 2.613691 GTATTGCTCGGTTTTCCTCGA 58.386 47.619 0.00 0.00 37.95 4.04
404 405 4.755123 GGTTTTCCTCGAACTGATTCTTCA 59.245 41.667 0.00 0.00 36.94 3.02
405 406 5.334182 GGTTTTCCTCGAACTGATTCTTCAC 60.334 44.000 0.00 0.00 36.94 3.18
418 419 4.690748 TGATTCTTCACGGTGAAAAGCTAG 59.309 41.667 22.60 11.26 35.73 3.42
442 443 3.091545 TCTTGCTTTGATGGTTGGATCC 58.908 45.455 4.20 4.20 0.00 3.36
443 444 1.462616 TGCTTTGATGGTTGGATCCG 58.537 50.000 7.39 0.00 0.00 4.18
444 445 0.740737 GCTTTGATGGTTGGATCCGG 59.259 55.000 7.39 0.00 0.00 5.14
448 449 0.251916 TGATGGTTGGATCCGGTGAC 59.748 55.000 7.39 3.15 0.00 3.67
453 454 0.034896 GTTGGATCCGGTGACAGTGT 59.965 55.000 7.39 0.00 0.00 3.55
455 456 1.153823 GGATCCGGTGACAGTGTCG 60.154 63.158 18.17 7.30 34.95 4.35
460 461 1.299850 CGGTGACAGTGTCGCTTGA 60.300 57.895 30.25 6.47 42.03 3.02
503 504 1.953559 TGTTGTTGAAGAGCTTCGCT 58.046 45.000 5.82 0.00 43.88 4.93
520 521 1.671850 CGCTGTCCGTGTGGTCTTATT 60.672 52.381 0.00 0.00 36.30 1.40
527 528 3.942748 TCCGTGTGGTCTTATTAAATGGC 59.057 43.478 0.00 0.00 36.30 4.40
539 540 1.388547 TAAATGGCTGGTGCGGATTC 58.611 50.000 0.00 0.00 40.82 2.52
583 584 6.515832 TGATTGCAGATCTTATCGCTTTAGA 58.484 36.000 0.00 0.00 32.64 2.10
586 587 5.284864 TGCAGATCTTATCGCTTTAGAGTG 58.715 41.667 0.00 0.00 32.64 3.51
597 598 4.621460 TCGCTTTAGAGTGTTTTCTCATCG 59.379 41.667 0.00 0.00 36.97 3.84
609 610 6.697455 GTGTTTTCTCATCGTCTATGCATAGA 59.303 38.462 28.69 28.69 37.07 1.98
616 617 6.524734 TCATCGTCTATGCATAGATTTGGTT 58.475 36.000 33.20 17.48 41.09 3.67
698 699 5.592054 CATTCTAGTTATGCAGAGACCGAA 58.408 41.667 0.00 0.00 0.00 4.30
701 702 7.526142 TTCTAGTTATGCAGAGACCGAATAT 57.474 36.000 0.00 0.00 0.00 1.28
702 703 6.914259 TCTAGTTATGCAGAGACCGAATATG 58.086 40.000 0.00 0.00 0.00 1.78
704 705 5.292765 AGTTATGCAGAGACCGAATATGTG 58.707 41.667 0.00 0.00 0.00 3.21
705 706 1.939974 TGCAGAGACCGAATATGTGC 58.060 50.000 0.00 0.00 39.21 4.57
706 707 1.482182 TGCAGAGACCGAATATGTGCT 59.518 47.619 5.31 0.00 39.48 4.40
707 708 2.131183 GCAGAGACCGAATATGTGCTC 58.869 52.381 0.00 0.00 35.95 4.26
708 709 2.389059 CAGAGACCGAATATGTGCTCG 58.611 52.381 0.00 0.00 34.83 5.03
709 710 2.025155 AGAGACCGAATATGTGCTCGT 58.975 47.619 0.00 0.00 33.17 4.18
710 711 2.427453 AGAGACCGAATATGTGCTCGTT 59.573 45.455 0.00 0.00 33.17 3.85
711 712 2.535984 GAGACCGAATATGTGCTCGTTG 59.464 50.000 0.00 0.00 33.17 4.10
728 729 5.277345 GCTCGTTGTGTTTGTAATTCTGAGT 60.277 40.000 0.00 0.00 0.00 3.41
740 741 9.638239 TTTGTAATTCTGAGTCAATAAAATGCC 57.362 29.630 0.00 0.00 0.00 4.40
742 743 5.859205 ATTCTGAGTCAATAAAATGCCCC 57.141 39.130 0.00 0.00 0.00 5.80
759 760 4.086457 TGCCCCCTTTATCAAAAGAAGTC 58.914 43.478 0.00 0.00 44.14 3.01
763 764 5.007682 CCCCTTTATCAAAAGAAGTCGGAA 58.992 41.667 0.00 0.00 44.14 4.30
771 772 2.474410 AAGAAGTCGGAATGGTCCAC 57.526 50.000 0.00 0.00 45.26 4.02
775 776 3.195825 AGAAGTCGGAATGGTCCACTAAG 59.804 47.826 0.00 0.00 45.26 2.18
872 912 2.226315 TGGCTGCTCCAGTCCACAT 61.226 57.895 0.00 0.00 40.72 3.21
891 931 0.911769 TCCGAAGATGCCAATCTGGT 59.088 50.000 0.00 0.00 42.60 4.00
996 1069 4.201812 GCAGAGCAAACGATAAGTATTGCA 60.202 41.667 11.37 0.00 43.10 4.08
1031 1104 0.322546 AGTGTCCCTCGCATTTTCCC 60.323 55.000 0.00 0.00 0.00 3.97
1035 1108 1.819632 CCCTCGCATTTTCCCTCCG 60.820 63.158 0.00 0.00 0.00 4.63
1041 1114 1.450312 CATTTTCCCTCCGCGAGCT 60.450 57.895 8.23 0.00 0.00 4.09
1114 1187 3.192922 GTCCACACGCGGCCATAC 61.193 66.667 12.47 0.00 0.00 2.39
1172 1245 1.450669 GCCTCGCCCGTAAATCCAA 60.451 57.895 0.00 0.00 0.00 3.53
1210 1283 1.084370 CATCGCCGTCTGTTTCTCCC 61.084 60.000 0.00 0.00 0.00 4.30
1324 1397 1.180456 TTTCCTCTACGTCGCCACCA 61.180 55.000 0.00 0.00 0.00 4.17
1599 1672 1.828660 CTCCATCTCCTACGGCGGT 60.829 63.158 13.24 1.39 0.00 5.68
2291 2372 1.152546 GGATATGGTGGTTGGGGGC 60.153 63.158 0.00 0.00 0.00 5.80
2349 2430 1.379527 GGAGATGCTACAAAACCGGG 58.620 55.000 6.32 0.00 0.00 5.73
2368 2449 1.883084 GGATACTGCGGAAGGTGCG 60.883 63.158 0.00 0.00 34.24 5.34
2393 2474 4.657824 CTCGACGCGGTGGTTGGT 62.658 66.667 12.47 0.00 0.00 3.67
2972 3053 0.723981 GTGCTCGAATCAGTTCAGCC 59.276 55.000 0.00 1.22 37.53 4.85
2977 3058 0.725686 CGAATCAGTTCAGCCTGCAG 59.274 55.000 6.78 6.78 33.86 4.41
3019 3100 3.748568 TGTTGGTCCAAACAAAAGTTTGC 59.251 39.130 5.69 3.64 41.52 3.68
3058 3139 4.442375 TGTCTGCTTCTTCTGTAGTAGC 57.558 45.455 6.07 6.07 44.85 3.58
3170 3251 3.007074 TGCAATAGTACCGAACTTGGACA 59.993 43.478 0.00 0.00 39.80 4.02
3171 3252 4.189231 GCAATAGTACCGAACTTGGACAT 58.811 43.478 0.00 0.00 39.80 3.06
3172 3253 4.034048 GCAATAGTACCGAACTTGGACATG 59.966 45.833 0.00 0.00 39.80 3.21
3173 3254 5.175859 CAATAGTACCGAACTTGGACATGT 58.824 41.667 0.00 0.00 39.80 3.21
3174 3255 3.040147 AGTACCGAACTTGGACATGTG 57.960 47.619 1.15 0.00 33.35 3.21
3175 3256 2.631062 AGTACCGAACTTGGACATGTGA 59.369 45.455 1.15 0.00 33.35 3.58
3176 3257 2.169832 ACCGAACTTGGACATGTGAG 57.830 50.000 1.15 0.58 0.00 3.51
3177 3258 1.416401 ACCGAACTTGGACATGTGAGT 59.584 47.619 1.15 1.30 0.00 3.41
3178 3259 1.800586 CCGAACTTGGACATGTGAGTG 59.199 52.381 1.15 0.00 0.00 3.51
3179 3260 2.547855 CCGAACTTGGACATGTGAGTGA 60.548 50.000 1.15 0.00 0.00 3.41
3180 3261 2.476619 CGAACTTGGACATGTGAGTGAC 59.523 50.000 1.15 2.72 0.00 3.67
3181 3262 2.550830 ACTTGGACATGTGAGTGACC 57.449 50.000 1.15 0.00 35.02 4.02
3184 3265 2.549064 TGGACATGTGAGTGACCTTG 57.451 50.000 1.15 0.00 35.40 3.61
3187 3268 2.224523 GGACATGTGAGTGACCTTGGAA 60.225 50.000 1.15 0.00 32.31 3.53
3204 3285 1.475034 GGAACATCTCCAATAGCCGCA 60.475 52.381 0.00 0.00 44.67 5.69
3263 3346 3.454941 GCATGAAGTTTTCACGCGT 57.545 47.368 5.58 5.58 39.18 6.01
3294 3377 1.353804 GAAAAACAGCCGCACGTGA 59.646 52.632 22.23 0.00 0.00 4.35
3347 3432 0.108329 AGTCGCACGGTAGATTTGGG 60.108 55.000 0.00 0.00 0.00 4.12
3351 3446 1.078708 CACGGTAGATTTGGGCGGT 60.079 57.895 0.00 0.00 0.00 5.68
3414 3516 3.799755 ACGCGCGCATTTCCCTTC 61.800 61.111 32.58 0.00 0.00 3.46
3455 3567 0.459934 CGCTTCCTCTGCTTCCTCAG 60.460 60.000 0.00 0.00 35.46 3.35
3673 3791 0.110867 TCACGCGCAAATGAACTTCG 60.111 50.000 5.73 0.00 0.00 3.79
3740 3858 2.697751 CTCCTCTGATAACAGACCAGGG 59.302 54.545 0.00 0.00 46.55 4.45
3805 3923 3.069980 GAGGACGAGCGAGCCATGT 62.070 63.158 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.143340 GCGGGTTAACTTAAGAAACAAAAGAT 58.857 34.615 10.09 0.00 0.00 2.40
1 2 6.459985 GGCGGGTTAACTTAAGAAACAAAAGA 60.460 38.462 10.09 0.00 0.00 2.52
2 3 5.688621 GGCGGGTTAACTTAAGAAACAAAAG 59.311 40.000 10.09 6.84 0.00 2.27
3 4 5.590145 GGCGGGTTAACTTAAGAAACAAAA 58.410 37.500 10.09 0.00 0.00 2.44
4 5 4.261114 CGGCGGGTTAACTTAAGAAACAAA 60.261 41.667 10.09 0.00 0.00 2.83
5 6 3.250521 CGGCGGGTTAACTTAAGAAACAA 59.749 43.478 10.09 0.00 0.00 2.83
6 7 2.807392 CGGCGGGTTAACTTAAGAAACA 59.193 45.455 10.09 0.00 0.00 2.83
7 8 2.413239 GCGGCGGGTTAACTTAAGAAAC 60.413 50.000 10.09 12.34 0.00 2.78
8 9 1.805943 GCGGCGGGTTAACTTAAGAAA 59.194 47.619 10.09 0.05 0.00 2.52
9 10 1.441738 GCGGCGGGTTAACTTAAGAA 58.558 50.000 10.09 0.00 0.00 2.52
10 11 0.391528 GGCGGCGGGTTAACTTAAGA 60.392 55.000 10.09 0.00 0.00 2.10
11 12 1.698714 CGGCGGCGGGTTAACTTAAG 61.699 60.000 25.36 0.00 0.00 1.85
12 13 1.741032 CGGCGGCGGGTTAACTTAA 60.741 57.895 25.36 0.00 0.00 1.85
13 14 2.125592 CGGCGGCGGGTTAACTTA 60.126 61.111 25.36 0.00 0.00 2.24
25 26 1.968050 ATAAAGGTGAGACCCGGCGG 61.968 60.000 21.46 21.46 39.75 6.13
26 27 0.748450 TATAAAGGTGAGACCCGGCG 59.252 55.000 0.00 0.00 39.75 6.46
27 28 3.322828 TGTATATAAAGGTGAGACCCGGC 59.677 47.826 0.00 0.00 39.75 6.13
28 29 4.342951 TGTGTATATAAAGGTGAGACCCGG 59.657 45.833 0.00 0.00 39.75 5.73
29 30 5.509163 CCTGTGTATATAAAGGTGAGACCCG 60.509 48.000 0.00 0.00 39.75 5.28
30 31 5.365895 ACCTGTGTATATAAAGGTGAGACCC 59.634 44.000 10.43 0.00 41.52 4.46
31 32 6.481434 ACCTGTGTATATAAAGGTGAGACC 57.519 41.667 10.43 0.00 41.52 3.85
32 33 7.553334 TCAACCTGTGTATATAAAGGTGAGAC 58.447 38.462 11.85 0.00 42.25 3.36
33 34 7.147724 CCTCAACCTGTGTATATAAAGGTGAGA 60.148 40.741 24.27 18.49 42.25 3.27
34 35 6.986817 CCTCAACCTGTGTATATAAAGGTGAG 59.013 42.308 19.96 19.96 42.25 3.51
35 36 6.631766 GCCTCAACCTGTGTATATAAAGGTGA 60.632 42.308 11.85 10.26 42.25 4.02
36 37 5.527582 GCCTCAACCTGTGTATATAAAGGTG 59.472 44.000 11.85 6.94 42.25 4.00
37 38 5.397559 GGCCTCAACCTGTGTATATAAAGGT 60.398 44.000 5.53 5.53 45.01 3.50
38 39 5.063880 GGCCTCAACCTGTGTATATAAAGG 58.936 45.833 4.18 4.18 35.82 3.11
39 40 5.930135 AGGCCTCAACCTGTGTATATAAAG 58.070 41.667 0.00 0.00 39.13 1.85
40 41 5.968676 AGGCCTCAACCTGTGTATATAAA 57.031 39.130 0.00 0.00 39.13 1.40
41 42 5.010314 CGTAGGCCTCAACCTGTGTATATAA 59.990 44.000 9.68 0.00 41.34 0.98
42 43 4.521639 CGTAGGCCTCAACCTGTGTATATA 59.478 45.833 9.68 0.00 41.34 0.86
43 44 3.321111 CGTAGGCCTCAACCTGTGTATAT 59.679 47.826 9.68 0.00 41.34 0.86
44 45 2.691526 CGTAGGCCTCAACCTGTGTATA 59.308 50.000 9.68 0.00 41.34 1.47
45 46 1.480954 CGTAGGCCTCAACCTGTGTAT 59.519 52.381 9.68 0.00 41.34 2.29
46 47 0.892755 CGTAGGCCTCAACCTGTGTA 59.107 55.000 9.68 0.00 41.34 2.90
47 48 1.671742 CGTAGGCCTCAACCTGTGT 59.328 57.895 9.68 0.00 41.34 3.72
48 49 1.079127 CCGTAGGCCTCAACCTGTG 60.079 63.158 9.68 0.00 46.14 3.66
49 50 3.388841 CCGTAGGCCTCAACCTGT 58.611 61.111 9.68 0.00 46.14 4.00
61 62 0.381089 CGGGACTCTGTAAGCCGTAG 59.619 60.000 0.00 0.00 0.00 3.51
62 63 1.033746 CCGGGACTCTGTAAGCCGTA 61.034 60.000 0.00 0.00 30.96 4.02
63 64 2.348888 CCGGGACTCTGTAAGCCGT 61.349 63.158 0.00 0.00 30.96 5.68
64 65 2.280823 GACCGGGACTCTGTAAGCCG 62.281 65.000 6.32 0.00 32.26 5.52
65 66 1.516423 GACCGGGACTCTGTAAGCC 59.484 63.158 6.32 0.00 0.00 4.35
66 67 1.139095 CGACCGGGACTCTGTAAGC 59.861 63.158 6.32 0.00 0.00 3.09
67 68 1.807886 CCGACCGGGACTCTGTAAG 59.192 63.158 6.32 0.00 38.47 2.34
68 69 2.345760 GCCGACCGGGACTCTGTAA 61.346 63.158 6.32 0.00 38.47 2.41
69 70 2.753043 GCCGACCGGGACTCTGTA 60.753 66.667 6.32 0.00 38.47 2.74
70 71 4.680537 AGCCGACCGGGACTCTGT 62.681 66.667 6.32 0.00 38.47 3.41
71 72 3.827898 GAGCCGACCGGGACTCTG 61.828 72.222 6.32 0.00 38.47 3.35
72 73 4.361971 TGAGCCGACCGGGACTCT 62.362 66.667 6.32 0.00 38.79 3.24
73 74 4.131088 GTGAGCCGACCGGGACTC 62.131 72.222 6.32 7.38 38.60 3.36
74 75 4.988716 TGTGAGCCGACCGGGACT 62.989 66.667 6.32 0.00 38.47 3.85
75 76 4.736896 GTGTGAGCCGACCGGGAC 62.737 72.222 6.32 0.00 38.47 4.46
77 78 4.308458 TTGTGTGAGCCGACCGGG 62.308 66.667 6.32 0.00 39.58 5.73
78 79 3.041940 GTTGTGTGAGCCGACCGG 61.042 66.667 0.00 0.00 38.57 5.28
79 80 3.403057 CGTTGTGTGAGCCGACCG 61.403 66.667 0.00 0.00 0.00 4.79
80 81 2.279918 ACGTTGTGTGAGCCGACC 60.280 61.111 0.00 0.00 0.00 4.79
89 90 1.591594 CGAGCTGGTCACGTTGTGT 60.592 57.895 7.70 0.00 34.79 3.72
90 91 2.310233 CCGAGCTGGTCACGTTGTG 61.310 63.158 7.70 0.00 34.45 3.33
91 92 2.029073 CCGAGCTGGTCACGTTGT 59.971 61.111 7.70 0.00 0.00 3.32
100 101 2.223377 GTGTTGTTAGAAACCGAGCTGG 59.777 50.000 0.00 0.00 46.41 4.85
101 102 3.131396 AGTGTTGTTAGAAACCGAGCTG 58.869 45.455 0.00 0.00 0.00 4.24
102 103 3.470645 AGTGTTGTTAGAAACCGAGCT 57.529 42.857 0.00 0.00 0.00 4.09
103 104 3.848554 GCAAGTGTTGTTAGAAACCGAGC 60.849 47.826 0.00 0.00 0.00 5.03
104 105 3.303791 GGCAAGTGTTGTTAGAAACCGAG 60.304 47.826 0.00 0.00 0.00 4.63
105 106 2.614983 GGCAAGTGTTGTTAGAAACCGA 59.385 45.455 0.00 0.00 0.00 4.69
106 107 2.616842 AGGCAAGTGTTGTTAGAAACCG 59.383 45.455 0.00 0.00 0.00 4.44
107 108 4.359706 CAAGGCAAGTGTTGTTAGAAACC 58.640 43.478 0.00 0.00 0.00 3.27
108 109 3.796717 GCAAGGCAAGTGTTGTTAGAAAC 59.203 43.478 0.00 0.00 0.00 2.78
109 110 3.445450 TGCAAGGCAAGTGTTGTTAGAAA 59.555 39.130 0.00 0.00 34.76 2.52
110 111 3.020274 TGCAAGGCAAGTGTTGTTAGAA 58.980 40.909 0.00 0.00 34.76 2.10
111 112 2.649190 TGCAAGGCAAGTGTTGTTAGA 58.351 42.857 0.00 0.00 34.76 2.10
112 113 3.648339 ATGCAAGGCAAGTGTTGTTAG 57.352 42.857 0.00 0.00 43.62 2.34
113 114 4.339530 TGTTATGCAAGGCAAGTGTTGTTA 59.660 37.500 0.00 0.00 43.62 2.41
114 115 3.131933 TGTTATGCAAGGCAAGTGTTGTT 59.868 39.130 0.00 0.00 43.62 2.83
115 116 2.692557 TGTTATGCAAGGCAAGTGTTGT 59.307 40.909 0.00 0.00 43.62 3.32
116 117 3.367992 TGTTATGCAAGGCAAGTGTTG 57.632 42.857 0.00 0.00 43.62 3.33
127 128 6.749578 CGCCATATGTTTAACTTGTTATGCAA 59.250 34.615 1.24 0.00 35.50 4.08
128 129 6.261859 CGCCATATGTTTAACTTGTTATGCA 58.738 36.000 1.24 0.00 0.00 3.96
129 130 5.685511 CCGCCATATGTTTAACTTGTTATGC 59.314 40.000 1.24 0.00 0.00 3.14
130 131 5.685511 GCCGCCATATGTTTAACTTGTTATG 59.314 40.000 1.24 0.14 0.00 1.90
131 132 5.592688 AGCCGCCATATGTTTAACTTGTTAT 59.407 36.000 1.24 0.00 0.00 1.89
132 133 4.944930 AGCCGCCATATGTTTAACTTGTTA 59.055 37.500 1.24 0.00 0.00 2.41
133 134 3.761752 AGCCGCCATATGTTTAACTTGTT 59.238 39.130 1.24 0.00 0.00 2.83
134 135 3.352648 AGCCGCCATATGTTTAACTTGT 58.647 40.909 1.24 0.00 0.00 3.16
135 136 4.370364 AAGCCGCCATATGTTTAACTTG 57.630 40.909 1.24 0.00 0.00 3.16
136 137 5.240844 GGATAAGCCGCCATATGTTTAACTT 59.759 40.000 1.24 1.87 0.00 2.66
137 138 4.760204 GGATAAGCCGCCATATGTTTAACT 59.240 41.667 1.24 0.00 0.00 2.24
138 139 4.082949 GGGATAAGCCGCCATATGTTTAAC 60.083 45.833 1.24 0.00 37.63 2.01
139 140 4.076394 GGGATAAGCCGCCATATGTTTAA 58.924 43.478 1.24 0.00 37.63 1.52
140 141 3.329520 AGGGATAAGCCGCCATATGTTTA 59.670 43.478 1.24 0.00 37.63 2.01
141 142 2.108250 AGGGATAAGCCGCCATATGTTT 59.892 45.455 1.24 0.00 37.63 2.83
142 143 1.705186 AGGGATAAGCCGCCATATGTT 59.295 47.619 1.24 0.00 37.63 2.71
143 144 1.362224 AGGGATAAGCCGCCATATGT 58.638 50.000 1.24 0.00 37.63 2.29
144 145 2.489329 CAAAGGGATAAGCCGCCATATG 59.511 50.000 0.00 0.00 37.63 1.78
145 146 2.555227 CCAAAGGGATAAGCCGCCATAT 60.555 50.000 0.00 0.00 37.63 1.78
146 147 1.202879 CCAAAGGGATAAGCCGCCATA 60.203 52.381 0.00 0.00 37.63 2.74
147 148 0.468029 CCAAAGGGATAAGCCGCCAT 60.468 55.000 0.00 0.00 37.63 4.40
148 149 1.077068 CCAAAGGGATAAGCCGCCA 60.077 57.895 0.00 0.00 37.63 5.69
149 150 3.841870 CCAAAGGGATAAGCCGCC 58.158 61.111 0.00 0.00 37.63 6.13
160 161 1.749258 GCGACTTAGGGCCCAAAGG 60.749 63.158 27.56 14.87 0.00 3.11
161 162 1.749258 GGCGACTTAGGGCCCAAAG 60.749 63.158 27.56 13.25 43.64 2.77
162 163 2.353573 GGCGACTTAGGGCCCAAA 59.646 61.111 27.56 9.05 43.64 3.28
167 168 4.222847 CCGGAGGCGACTTAGGGC 62.223 72.222 0.00 0.00 46.14 5.19
179 180 3.330720 AAGGCCCAAGACCCGGAG 61.331 66.667 0.73 0.00 0.00 4.63
180 181 3.327404 GAAGGCCCAAGACCCGGA 61.327 66.667 0.73 0.00 0.00 5.14
181 182 2.499303 ATTGAAGGCCCAAGACCCGG 62.499 60.000 0.00 0.00 0.00 5.73
182 183 0.254747 TATTGAAGGCCCAAGACCCG 59.745 55.000 0.00 0.00 0.00 5.28
183 184 2.379005 CTTATTGAAGGCCCAAGACCC 58.621 52.381 0.00 0.00 0.00 4.46
184 185 1.751351 GCTTATTGAAGGCCCAAGACC 59.249 52.381 0.00 0.00 32.84 3.85
185 186 2.728007 AGCTTATTGAAGGCCCAAGAC 58.272 47.619 0.00 0.00 32.84 3.01
186 187 3.091545 CAAGCTTATTGAAGGCCCAAGA 58.908 45.455 0.00 0.00 32.84 3.02
187 188 2.417787 GCAAGCTTATTGAAGGCCCAAG 60.418 50.000 0.00 0.00 32.84 3.61
188 189 1.550072 GCAAGCTTATTGAAGGCCCAA 59.450 47.619 0.00 0.00 32.84 4.12
189 190 1.185315 GCAAGCTTATTGAAGGCCCA 58.815 50.000 0.00 0.00 32.84 5.36
190 191 1.478631 AGCAAGCTTATTGAAGGCCC 58.521 50.000 0.00 0.00 32.84 5.80
191 192 2.493278 TGAAGCAAGCTTATTGAAGGCC 59.507 45.455 7.37 0.00 36.26 5.19
192 193 3.855689 TGAAGCAAGCTTATTGAAGGC 57.144 42.857 7.37 0.00 36.26 4.35
193 194 5.633830 TCTTGAAGCAAGCTTATTGAAGG 57.366 39.130 17.05 0.00 40.84 3.46
194 195 5.860716 GGTTCTTGAAGCAAGCTTATTGAAG 59.139 40.000 7.37 13.30 40.84 3.02
195 196 5.562696 CGGTTCTTGAAGCAAGCTTATTGAA 60.563 40.000 7.37 8.99 40.84 2.69
196 197 4.083324 CGGTTCTTGAAGCAAGCTTATTGA 60.083 41.667 7.37 3.52 40.84 2.57
197 198 4.161333 CGGTTCTTGAAGCAAGCTTATTG 58.839 43.478 7.37 1.22 40.84 1.90
198 199 3.366374 GCGGTTCTTGAAGCAAGCTTATT 60.366 43.478 7.37 0.00 40.84 1.40
199 200 2.162408 GCGGTTCTTGAAGCAAGCTTAT 59.838 45.455 7.37 0.00 40.84 1.73
200 201 1.535462 GCGGTTCTTGAAGCAAGCTTA 59.465 47.619 7.37 0.00 40.84 3.09
201 202 0.312102 GCGGTTCTTGAAGCAAGCTT 59.688 50.000 7.07 7.07 40.84 3.74
202 203 1.518903 GGCGGTTCTTGAAGCAAGCT 61.519 55.000 12.15 0.00 40.84 3.74
203 204 1.081175 GGCGGTTCTTGAAGCAAGC 60.081 57.895 12.15 8.17 40.84 4.01
204 205 0.883833 ATGGCGGTTCTTGAAGCAAG 59.116 50.000 12.15 0.84 42.25 4.01
205 206 0.881118 GATGGCGGTTCTTGAAGCAA 59.119 50.000 12.15 0.00 0.00 3.91
206 207 0.036732 AGATGGCGGTTCTTGAAGCA 59.963 50.000 12.15 0.00 0.00 3.91
207 208 1.131315 GAAGATGGCGGTTCTTGAAGC 59.869 52.381 2.80 2.80 33.65 3.86
208 209 2.160417 GTGAAGATGGCGGTTCTTGAAG 59.840 50.000 2.40 0.00 33.65 3.02
209 210 2.151202 GTGAAGATGGCGGTTCTTGAA 58.849 47.619 2.40 0.00 33.65 2.69
210 211 1.071542 TGTGAAGATGGCGGTTCTTGA 59.928 47.619 2.40 0.00 33.65 3.02
211 212 1.522668 TGTGAAGATGGCGGTTCTTG 58.477 50.000 2.40 0.00 33.65 3.02
212 213 2.026822 AGATGTGAAGATGGCGGTTCTT 60.027 45.455 0.00 0.00 36.16 2.52
213 214 1.556911 AGATGTGAAGATGGCGGTTCT 59.443 47.619 0.00 0.00 0.00 3.01
214 215 2.029838 AGATGTGAAGATGGCGGTTC 57.970 50.000 0.00 0.00 0.00 3.62
215 216 2.086869 CAAGATGTGAAGATGGCGGTT 58.913 47.619 0.00 0.00 0.00 4.44
216 217 1.679944 CCAAGATGTGAAGATGGCGGT 60.680 52.381 0.00 0.00 0.00 5.68
217 218 1.019673 CCAAGATGTGAAGATGGCGG 58.980 55.000 0.00 0.00 0.00 6.13
218 219 1.019673 CCCAAGATGTGAAGATGGCG 58.980 55.000 0.00 0.00 0.00 5.69
219 220 0.743097 GCCCAAGATGTGAAGATGGC 59.257 55.000 0.00 0.00 0.00 4.40
220 221 2.431954 AGCCCAAGATGTGAAGATGG 57.568 50.000 0.00 0.00 0.00 3.51
221 222 3.618351 AGAAGCCCAAGATGTGAAGATG 58.382 45.455 0.00 0.00 0.00 2.90
222 223 4.263639 TGAAGAAGCCCAAGATGTGAAGAT 60.264 41.667 0.00 0.00 0.00 2.40
223 224 3.072915 TGAAGAAGCCCAAGATGTGAAGA 59.927 43.478 0.00 0.00 0.00 2.87
224 225 3.415212 TGAAGAAGCCCAAGATGTGAAG 58.585 45.455 0.00 0.00 0.00 3.02
225 226 3.507162 TGAAGAAGCCCAAGATGTGAA 57.493 42.857 0.00 0.00 0.00 3.18
226 227 3.265221 AGATGAAGAAGCCCAAGATGTGA 59.735 43.478 0.00 0.00 0.00 3.58
227 228 3.618351 AGATGAAGAAGCCCAAGATGTG 58.382 45.455 0.00 0.00 0.00 3.21
228 229 4.015084 CAAGATGAAGAAGCCCAAGATGT 58.985 43.478 0.00 0.00 0.00 3.06
229 230 4.267536 TCAAGATGAAGAAGCCCAAGATG 58.732 43.478 0.00 0.00 0.00 2.90
230 231 4.018597 ACTCAAGATGAAGAAGCCCAAGAT 60.019 41.667 0.00 0.00 0.00 2.40
231 232 3.328931 ACTCAAGATGAAGAAGCCCAAGA 59.671 43.478 0.00 0.00 0.00 3.02
232 233 3.683802 ACTCAAGATGAAGAAGCCCAAG 58.316 45.455 0.00 0.00 0.00 3.61
233 234 3.679389 GACTCAAGATGAAGAAGCCCAA 58.321 45.455 0.00 0.00 0.00 4.12
234 235 2.354103 CGACTCAAGATGAAGAAGCCCA 60.354 50.000 0.00 0.00 0.00 5.36
235 236 2.275318 CGACTCAAGATGAAGAAGCCC 58.725 52.381 0.00 0.00 0.00 5.19
236 237 1.663135 GCGACTCAAGATGAAGAAGCC 59.337 52.381 0.00 0.00 0.00 4.35
237 238 1.663135 GGCGACTCAAGATGAAGAAGC 59.337 52.381 0.00 0.00 0.00 3.86
238 239 2.275318 GGGCGACTCAAGATGAAGAAG 58.725 52.381 0.00 0.00 0.00 2.85
239 240 1.404181 CGGGCGACTCAAGATGAAGAA 60.404 52.381 0.00 0.00 0.00 2.52
240 241 0.173481 CGGGCGACTCAAGATGAAGA 59.827 55.000 0.00 0.00 0.00 2.87
241 242 0.108615 ACGGGCGACTCAAGATGAAG 60.109 55.000 0.00 0.00 0.00 3.02
242 243 1.134367 CTACGGGCGACTCAAGATGAA 59.866 52.381 0.00 0.00 0.00 2.57
243 244 0.738975 CTACGGGCGACTCAAGATGA 59.261 55.000 0.00 0.00 0.00 2.92
244 245 0.872021 GCTACGGGCGACTCAAGATG 60.872 60.000 0.00 0.00 0.00 2.90
245 246 1.320344 TGCTACGGGCGACTCAAGAT 61.320 55.000 0.00 0.00 45.43 2.40
246 247 1.320344 ATGCTACGGGCGACTCAAGA 61.320 55.000 0.00 0.00 45.43 3.02
247 248 1.141881 ATGCTACGGGCGACTCAAG 59.858 57.895 0.00 0.00 45.43 3.02
248 249 1.153647 CATGCTACGGGCGACTCAA 60.154 57.895 0.00 0.00 45.43 3.02
249 250 2.049767 TCATGCTACGGGCGACTCA 61.050 57.895 0.00 0.00 45.43 3.41
250 251 1.589196 GTCATGCTACGGGCGACTC 60.589 63.158 0.00 0.00 45.43 3.36
251 252 2.494918 GTCATGCTACGGGCGACT 59.505 61.111 0.00 0.00 45.43 4.18
252 253 2.585247 GGTCATGCTACGGGCGAC 60.585 66.667 0.00 0.00 45.43 5.19
253 254 3.845259 GGGTCATGCTACGGGCGA 61.845 66.667 0.00 0.00 45.43 5.54
255 256 3.845259 TCGGGTCATGCTACGGGC 61.845 66.667 0.00 0.00 42.22 6.13
256 257 2.106332 GTCGGGTCATGCTACGGG 59.894 66.667 0.00 0.00 0.00 5.28
257 258 2.106332 GGTCGGGTCATGCTACGG 59.894 66.667 0.00 0.00 0.00 4.02
258 259 2.106332 GGGTCGGGTCATGCTACG 59.894 66.667 0.00 0.00 0.00 3.51
259 260 2.504519 GGGGTCGGGTCATGCTAC 59.495 66.667 0.00 0.00 0.00 3.58
260 261 2.766651 GGGGGTCGGGTCATGCTA 60.767 66.667 0.00 0.00 0.00 3.49
261 262 4.741239 AGGGGGTCGGGTCATGCT 62.741 66.667 0.00 0.00 0.00 3.79
262 263 4.176752 GAGGGGGTCGGGTCATGC 62.177 72.222 0.00 0.00 0.00 4.06
263 264 3.480133 GGAGGGGGTCGGGTCATG 61.480 72.222 0.00 0.00 0.00 3.07
264 265 3.695825 AGGAGGGGGTCGGGTCAT 61.696 66.667 0.00 0.00 0.00 3.06
265 266 4.715130 CAGGAGGGGGTCGGGTCA 62.715 72.222 0.00 0.00 0.00 4.02
276 277 2.445845 TATGACCCGCCCAGGAGG 60.446 66.667 0.00 0.00 45.00 4.30
277 278 2.822399 GTATGACCCGCCCAGGAG 59.178 66.667 0.00 0.00 45.00 3.69
278 279 2.570774 TACGTATGACCCGCCCAGGA 62.571 60.000 0.00 0.00 45.00 3.86
279 280 2.083835 CTACGTATGACCCGCCCAGG 62.084 65.000 0.00 0.00 40.63 4.45
280 281 1.362717 CTACGTATGACCCGCCCAG 59.637 63.158 0.00 0.00 0.00 4.45
281 282 0.106769 TACTACGTATGACCCGCCCA 60.107 55.000 0.00 0.00 0.00 5.36
282 283 0.595095 CTACTACGTATGACCCGCCC 59.405 60.000 0.00 0.00 0.00 6.13
283 284 1.312815 ACTACTACGTATGACCCGCC 58.687 55.000 0.00 0.00 0.00 6.13
284 285 4.756084 ATAACTACTACGTATGACCCGC 57.244 45.455 0.00 0.00 0.00 6.13
285 286 7.414540 GGGAATATAACTACTACGTATGACCCG 60.415 44.444 0.00 0.00 0.00 5.28
286 287 7.394359 TGGGAATATAACTACTACGTATGACCC 59.606 40.741 0.00 0.00 0.00 4.46
287 288 8.340618 TGGGAATATAACTACTACGTATGACC 57.659 38.462 0.00 0.00 0.00 4.02
288 289 9.617975 GTTGGGAATATAACTACTACGTATGAC 57.382 37.037 0.00 0.00 0.00 3.06
289 290 9.353431 TGTTGGGAATATAACTACTACGTATGA 57.647 33.333 0.00 0.00 0.00 2.15
292 293 9.353431 TCATGTTGGGAATATAACTACTACGTA 57.647 33.333 0.00 0.00 0.00 3.57
293 294 8.139989 GTCATGTTGGGAATATAACTACTACGT 58.860 37.037 0.00 0.00 0.00 3.57
294 295 7.597743 GGTCATGTTGGGAATATAACTACTACG 59.402 40.741 0.00 0.00 0.00 3.51
295 296 7.876582 GGGTCATGTTGGGAATATAACTACTAC 59.123 40.741 0.00 0.00 0.00 2.73
296 297 7.256048 CGGGTCATGTTGGGAATATAACTACTA 60.256 40.741 0.00 0.00 0.00 1.82
297 298 6.463897 CGGGTCATGTTGGGAATATAACTACT 60.464 42.308 0.00 0.00 0.00 2.57
298 299 5.699458 CGGGTCATGTTGGGAATATAACTAC 59.301 44.000 0.00 0.00 0.00 2.73
299 300 5.603395 TCGGGTCATGTTGGGAATATAACTA 59.397 40.000 0.00 0.00 0.00 2.24
300 301 4.410883 TCGGGTCATGTTGGGAATATAACT 59.589 41.667 0.00 0.00 0.00 2.24
301 302 4.710324 TCGGGTCATGTTGGGAATATAAC 58.290 43.478 0.00 0.00 0.00 1.89
302 303 4.410883 ACTCGGGTCATGTTGGGAATATAA 59.589 41.667 0.00 0.00 0.00 0.98
303 304 3.971305 ACTCGGGTCATGTTGGGAATATA 59.029 43.478 0.00 0.00 0.00 0.86
304 305 2.777692 ACTCGGGTCATGTTGGGAATAT 59.222 45.455 0.00 0.00 0.00 1.28
305 306 2.193127 ACTCGGGTCATGTTGGGAATA 58.807 47.619 0.00 0.00 0.00 1.75
306 307 0.991920 ACTCGGGTCATGTTGGGAAT 59.008 50.000 0.00 0.00 0.00 3.01
307 308 0.768622 AACTCGGGTCATGTTGGGAA 59.231 50.000 0.00 0.00 0.00 3.97
308 309 0.036164 CAACTCGGGTCATGTTGGGA 59.964 55.000 0.00 0.00 37.85 4.37
309 310 2.555123 CAACTCGGGTCATGTTGGG 58.445 57.895 0.00 0.00 37.85 4.12
311 312 1.604604 AACCAACTCGGGTCATGTTG 58.395 50.000 0.00 0.00 41.32 3.33
312 313 3.713826 ATAACCAACTCGGGTCATGTT 57.286 42.857 0.00 0.00 41.32 2.71
313 314 3.118519 GGTATAACCAACTCGGGTCATGT 60.119 47.826 0.00 0.00 41.32 3.21
314 315 3.134081 AGGTATAACCAACTCGGGTCATG 59.866 47.826 0.00 0.00 41.95 3.07
315 316 3.134081 CAGGTATAACCAACTCGGGTCAT 59.866 47.826 0.00 0.00 41.95 3.06
338 339 5.693104 GGTAACGACTTAATATCGCCATTGA 59.307 40.000 8.71 0.00 43.46 2.57
344 345 6.254157 TGAACAAGGTAACGACTTAATATCGC 59.746 38.462 8.71 0.00 43.46 4.58
368 369 3.081804 AGGAAAACCGAGCAATACCTTG 58.918 45.455 0.00 0.00 35.36 3.61
373 374 2.997986 GTTCGAGGAAAACCGAGCAATA 59.002 45.455 0.00 0.00 36.32 1.90
387 388 2.263077 CCGTGAAGAATCAGTTCGAGG 58.737 52.381 0.00 0.00 39.38 4.63
390 391 2.672714 TCACCGTGAAGAATCAGTTCG 58.327 47.619 0.00 0.00 39.38 3.95
392 393 4.261197 GCTTTTCACCGTGAAGAATCAGTT 60.261 41.667 13.51 0.00 37.70 3.16
404 405 3.437049 GCAAGAATCTAGCTTTTCACCGT 59.563 43.478 0.00 0.00 0.00 4.83
405 406 3.686726 AGCAAGAATCTAGCTTTTCACCG 59.313 43.478 0.00 0.00 34.37 4.94
418 419 4.789012 TCCAACCATCAAAGCAAGAATC 57.211 40.909 0.00 0.00 0.00 2.52
431 432 0.253044 CTGTCACCGGATCCAACCAT 59.747 55.000 9.46 0.00 0.00 3.55
442 443 1.278172 CTCAAGCGACACTGTCACCG 61.278 60.000 9.84 0.00 32.09 4.94
443 444 1.560860 GCTCAAGCGACACTGTCACC 61.561 60.000 9.84 0.00 32.09 4.02
444 445 0.875908 TGCTCAAGCGACACTGTCAC 60.876 55.000 9.84 0.00 45.83 3.67
448 449 1.150827 TCAATGCTCAAGCGACACTG 58.849 50.000 0.00 0.00 45.83 3.66
460 461 1.409802 CCTTCAGGAGGCATCAATGCT 60.410 52.381 14.20 1.37 45.14 3.79
473 474 1.021202 TCAACAACAACGCCTTCAGG 58.979 50.000 0.00 0.00 38.53 3.86
503 504 4.938832 CCATTTAATAAGACCACACGGACA 59.061 41.667 0.00 0.00 35.59 4.02
520 521 1.388547 GAATCCGCACCAGCCATTTA 58.611 50.000 0.00 0.00 37.52 1.40
527 528 0.673644 AAAGACCGAATCCGCACCAG 60.674 55.000 0.00 0.00 0.00 4.00
539 540 1.873591 AGCAAGCTACAACAAAGACCG 59.126 47.619 0.00 0.00 0.00 4.79
575 576 4.386049 ACGATGAGAAAACACTCTAAAGCG 59.614 41.667 0.00 0.00 37.73 4.68
583 584 4.820897 TGCATAGACGATGAGAAAACACT 58.179 39.130 0.00 0.00 37.82 3.55
586 587 7.881643 ATCTATGCATAGACGATGAGAAAAC 57.118 36.000 33.31 0.00 41.77 2.43
616 617 9.767684 CGTCAACAAATAGCAAAGACATATAAA 57.232 29.630 0.00 0.00 0.00 1.40
654 655 8.575589 AGAATGCACATAAACAATACAAACTCA 58.424 29.630 0.00 0.00 0.00 3.41
675 676 5.188327 TCGGTCTCTGCATAACTAGAATG 57.812 43.478 0.00 0.90 0.00 2.67
698 699 5.933187 TTACAAACACAACGAGCACATAT 57.067 34.783 0.00 0.00 0.00 1.78
701 702 4.334203 AGAATTACAAACACAACGAGCACA 59.666 37.500 0.00 0.00 0.00 4.57
702 703 4.670621 CAGAATTACAAACACAACGAGCAC 59.329 41.667 0.00 0.00 0.00 4.40
704 705 5.090652 TCAGAATTACAAACACAACGAGC 57.909 39.130 0.00 0.00 0.00 5.03
705 706 6.019075 TGACTCAGAATTACAAACACAACGAG 60.019 38.462 0.00 0.00 0.00 4.18
706 707 5.813157 TGACTCAGAATTACAAACACAACGA 59.187 36.000 0.00 0.00 0.00 3.85
707 708 6.043327 TGACTCAGAATTACAAACACAACG 57.957 37.500 0.00 0.00 0.00 4.10
708 709 9.944663 TTATTGACTCAGAATTACAAACACAAC 57.055 29.630 0.00 0.00 0.00 3.32
728 729 7.502060 TTTGATAAAGGGGGCATTTTATTGA 57.498 32.000 0.00 0.00 31.50 2.57
738 739 3.128764 CGACTTCTTTTGATAAAGGGGGC 59.871 47.826 0.00 0.00 40.93 5.80
740 741 4.585879 TCCGACTTCTTTTGATAAAGGGG 58.414 43.478 0.00 0.00 40.93 4.79
742 743 6.151144 ACCATTCCGACTTCTTTTGATAAAGG 59.849 38.462 0.00 0.00 40.93 3.11
759 760 3.007635 GGAAACTTAGTGGACCATTCCG 58.992 50.000 6.54 0.00 46.37 4.30
763 764 1.280998 CGGGGAAACTTAGTGGACCAT 59.719 52.381 0.00 0.00 0.00 3.55
771 772 0.036671 AACCGAGCGGGGAAACTTAG 60.037 55.000 14.07 0.00 41.60 2.18
775 776 1.456296 AAATAACCGAGCGGGGAAAC 58.544 50.000 14.07 0.00 41.60 2.78
831 871 2.892425 GGGATGCCTCGCTTGTCG 60.892 66.667 0.00 0.00 40.15 4.35
872 912 0.911769 ACCAGATTGGCATCTTCGGA 59.088 50.000 0.00 0.00 42.67 4.55
891 931 0.389391 GGGCTTCCGATCGAGATTGA 59.611 55.000 18.66 1.16 0.00 2.57
996 1069 1.272490 ACACTCGTCGTTGACATCCAT 59.728 47.619 4.02 0.00 32.09 3.41
1114 1187 1.094785 CTCCAATAGGCGTTGGTTGG 58.905 55.000 19.50 11.89 46.92 3.77
1134 1207 1.136110 CGGTGTTTTCCACTTGGCTTT 59.864 47.619 0.00 0.00 43.94 3.51
1158 1231 0.944386 CCTGATTGGATTTACGGGCG 59.056 55.000 0.00 0.00 38.35 6.13
1172 1245 3.469970 TGCGTGGCGGATCCTGAT 61.470 61.111 10.75 0.00 35.26 2.90
1197 1270 1.613925 TGAGACAGGGAGAAACAGACG 59.386 52.381 0.00 0.00 0.00 4.18
1210 1283 2.303175 GGTAGCTAGGGACTGAGACAG 58.697 57.143 0.00 0.00 41.52 3.51
1398 1471 4.753662 TCCGGGTCGAGGGACAGG 62.754 72.222 0.00 0.00 45.28 4.00
1444 1517 0.696501 AAGATGGGGCCGTACTTGTT 59.303 50.000 0.00 0.00 0.00 2.83
1920 1993 1.120530 AGAAGTCTGACACGTTGGGT 58.879 50.000 10.88 0.00 0.00 4.51
2241 2322 2.548057 ACAGGACACATGCACGTAAAAG 59.452 45.455 0.00 0.00 0.00 2.27
2291 2372 0.041576 TGTTCGACGTCGTCTCTGTG 60.042 55.000 34.40 7.16 40.80 3.66
2349 2430 1.523938 GCACCTTCCGCAGTATCCC 60.524 63.158 0.00 0.00 0.00 3.85
2368 2449 4.493747 CCGCGTCGAGTTCCTCCC 62.494 72.222 4.92 0.00 0.00 4.30
2393 2474 1.739667 CTCCACCACGCCATCGATA 59.260 57.895 0.00 0.00 39.41 2.92
2972 3053 2.739932 CGAGAGGGGAAATGTACTGCAG 60.740 54.545 13.48 13.48 0.00 4.41
2977 3058 1.207329 AGCACGAGAGGGGAAATGTAC 59.793 52.381 0.00 0.00 32.68 2.90
3019 3100 5.625311 GCAGACAATTGAAACCGTAGAAAAG 59.375 40.000 13.59 0.00 0.00 2.27
3032 3113 5.858381 ACTACAGAAGAAGCAGACAATTGA 58.142 37.500 13.59 0.00 0.00 2.57
3059 3140 0.320247 GCTGTCTGCACACTGCTAGT 60.320 55.000 15.08 0.00 45.31 2.57
3060 3141 2.453843 GCTGTCTGCACACTGCTAG 58.546 57.895 15.08 0.00 45.31 3.42
3170 3251 3.328931 AGATGTTCCAAGGTCACTCACAT 59.671 43.478 0.00 0.00 0.00 3.21
3171 3252 2.705658 AGATGTTCCAAGGTCACTCACA 59.294 45.455 0.00 0.00 0.00 3.58
3172 3253 3.330267 GAGATGTTCCAAGGTCACTCAC 58.670 50.000 0.00 0.00 0.00 3.51
3173 3254 2.303022 GGAGATGTTCCAAGGTCACTCA 59.697 50.000 0.00 0.00 46.01 3.41
3174 3255 2.979240 GGAGATGTTCCAAGGTCACTC 58.021 52.381 0.00 0.00 46.01 3.51
3184 3265 1.230324 GCGGCTATTGGAGATGTTCC 58.770 55.000 0.00 0.00 46.98 3.62
3187 3268 0.179045 GGTGCGGCTATTGGAGATGT 60.179 55.000 0.00 0.00 0.00 3.06
3247 3330 3.617669 CTGAAACGCGTGAAAACTTCAT 58.382 40.909 14.98 0.00 42.47 2.57
3248 3331 2.789779 GCTGAAACGCGTGAAAACTTCA 60.790 45.455 14.98 16.85 37.33 3.02
3263 3346 2.357637 CTGTTTTTCACCTCCGCTGAAA 59.642 45.455 0.00 0.00 36.14 2.69
3277 3360 1.231221 TATCACGTGCGGCTGTTTTT 58.769 45.000 11.67 0.00 0.00 1.94
3284 3367 1.910819 CAAATGTTTATCACGTGCGGC 59.089 47.619 11.67 0.00 0.00 6.53
3294 3377 1.616620 CTGCGCGCACAAATGTTTAT 58.383 45.000 33.09 0.00 0.00 1.40
3318 3402 1.202568 CGTGCGACTGACAGCTTTG 59.797 57.895 1.25 0.00 0.00 2.77
3414 3516 1.163554 GAGAAAGCAGTGGAAGCAGG 58.836 55.000 0.00 0.00 0.00 4.85
3573 3685 3.296709 GAGGCCGAGGCGAAAGTCA 62.297 63.158 8.14 0.00 43.06 3.41
3663 3781 2.701073 AGACGTCGTCGAAGTTCATT 57.299 45.000 19.11 0.00 37.67 2.57
3740 3858 4.736896 GACGGTGGTCCTCACGGC 62.737 72.222 0.00 0.00 46.60 5.68
3853 3971 1.376037 CCGTCCTCTTTGCCCAGAC 60.376 63.158 0.00 0.00 0.00 3.51
3861 3979 2.358737 CGCCTTGCCGTCCTCTTT 60.359 61.111 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.