Multiple sequence alignment - TraesCS7B01G169000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G169000 chr7B 100.000 2174 0 0 1 2174 237916795 237914622 0.000000e+00 4015.0
1 TraesCS7B01G169000 chr7B 93.617 47 2 1 1811 1857 444536688 444536643 3.870000e-08 69.4
2 TraesCS7B01G169000 chr4B 98.997 897 3 2 1 891 169589675 169590571 0.000000e+00 1602.0
3 TraesCS7B01G169000 chr4B 98.991 892 8 1 1 891 169584209 169585100 0.000000e+00 1596.0
4 TraesCS7B01G169000 chr4B 99.652 287 1 0 1888 2174 104565031 104565317 1.910000e-145 525.0
5 TraesCS7B01G169000 chr3B 98.990 891 9 0 1 891 118757121 118756231 0.000000e+00 1596.0
6 TraesCS7B01G169000 chr3B 98.989 890 9 0 1 890 674479106 674478217 0.000000e+00 1594.0
7 TraesCS7B01G169000 chr3B 98.879 892 8 2 1 891 327914782 327915672 0.000000e+00 1591.0
8 TraesCS7B01G169000 chr3B 99.373 319 2 0 1856 2174 666507402 666507720 1.450000e-161 579.0
9 TraesCS7B01G169000 chr3B 98.233 283 4 1 982 1264 712992079 712991798 5.390000e-136 494.0
10 TraesCS7B01G169000 chr4A 98.878 891 10 0 1 891 684047342 684046452 0.000000e+00 1591.0
11 TraesCS7B01G169000 chr2B 98.878 891 10 0 1 891 699101898 699101008 0.000000e+00 1591.0
12 TraesCS7B01G169000 chr2B 98.765 891 11 0 1 891 699094696 699093806 0.000000e+00 1585.0
13 TraesCS7B01G169000 chr2B 90.545 275 25 1 1901 2174 38430920 38430646 1.590000e-96 363.0
14 TraesCS7B01G169000 chr1A 98.879 892 8 2 1 891 242690376 242691266 0.000000e+00 1591.0
15 TraesCS7B01G169000 chr7A 90.748 508 20 7 1262 1742 280844779 280844272 0.000000e+00 652.0
16 TraesCS7B01G169000 chr7A 98.561 278 4 0 982 1259 407300755 407300478 1.940000e-135 492.0
17 TraesCS7B01G169000 chr7A 93.907 279 16 1 1897 2174 26553425 26553147 9.280000e-114 420.0
18 TraesCS7B01G169000 chr7A 80.741 270 36 9 1003 1259 125267977 125267711 1.700000e-46 196.0
19 TraesCS7B01G169000 chr7A 94.565 92 5 0 891 982 280844859 280844768 2.250000e-30 143.0
20 TraesCS7B01G169000 chr7A 100.000 53 0 0 1774 1826 280844272 280844220 4.940000e-17 99.0
21 TraesCS7B01G169000 chr5A 98.214 336 4 2 1841 2174 626086910 626087245 8.650000e-164 586.0
22 TraesCS7B01G169000 chr5A 98.208 279 5 0 1896 2174 364682519 364682797 2.510000e-134 488.0
23 TraesCS7B01G169000 chr5A 92.115 279 21 1 1897 2174 580518816 580519094 2.020000e-105 392.0
24 TraesCS7B01G169000 chr5A 80.515 272 37 9 1003 1261 464181236 464180968 6.120000e-46 195.0
25 TraesCS7B01G169000 chr5B 99.355 310 2 0 1865 2174 631459601 631459910 1.460000e-156 562.0
26 TraesCS7B01G169000 chr3A 98.201 278 5 0 982 1259 647445480 647445203 9.020000e-134 486.0
27 TraesCS7B01G169000 chr3A 79.545 264 40 8 1005 1258 75415815 75415556 2.220000e-40 176.0
28 TraesCS7B01G169000 chr1B 98.201 278 5 0 982 1259 91000680 91000957 9.020000e-134 486.0
29 TraesCS7B01G169000 chr6B 94.056 286 15 2 1889 2174 440553626 440553909 1.190000e-117 433.0
30 TraesCS7B01G169000 chr7D 96.035 227 9 0 1599 1825 258976220 258975994 9.480000e-99 370.0
31 TraesCS7B01G169000 chr7D 96.685 181 6 0 1259 1439 258976630 258976450 3.510000e-78 302.0
32 TraesCS7B01G169000 chr7D 81.579 266 37 7 1003 1257 480009555 480009291 2.190000e-50 209.0
33 TraesCS7B01G169000 chr7D 95.122 123 2 1 1485 1603 258976452 258976330 7.920000e-45 191.0
34 TraesCS7B01G169000 chr2D 80.586 273 37 9 1003 1262 540062493 540062224 1.700000e-46 196.0
35 TraesCS7B01G169000 chr1D 97.297 37 1 0 1821 1857 265173755 265173719 1.800000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G169000 chr7B 237914622 237916795 2173 True 4015.000000 4015 100.000000 1 2174 1 chr7B.!!$R1 2173
1 TraesCS7B01G169000 chr4B 169589675 169590571 896 False 1602.000000 1602 98.997000 1 891 1 chr4B.!!$F3 890
2 TraesCS7B01G169000 chr4B 169584209 169585100 891 False 1596.000000 1596 98.991000 1 891 1 chr4B.!!$F2 890
3 TraesCS7B01G169000 chr3B 118756231 118757121 890 True 1596.000000 1596 98.990000 1 891 1 chr3B.!!$R1 890
4 TraesCS7B01G169000 chr3B 674478217 674479106 889 True 1594.000000 1594 98.989000 1 890 1 chr3B.!!$R2 889
5 TraesCS7B01G169000 chr3B 327914782 327915672 890 False 1591.000000 1591 98.879000 1 891 1 chr3B.!!$F1 890
6 TraesCS7B01G169000 chr4A 684046452 684047342 890 True 1591.000000 1591 98.878000 1 891 1 chr4A.!!$R1 890
7 TraesCS7B01G169000 chr2B 699101008 699101898 890 True 1591.000000 1591 98.878000 1 891 1 chr2B.!!$R3 890
8 TraesCS7B01G169000 chr2B 699093806 699094696 890 True 1585.000000 1585 98.765000 1 891 1 chr2B.!!$R2 890
9 TraesCS7B01G169000 chr1A 242690376 242691266 890 False 1591.000000 1591 98.879000 1 891 1 chr1A.!!$F1 890
10 TraesCS7B01G169000 chr7A 280844220 280844859 639 True 298.000000 652 95.104333 891 1826 3 chr7A.!!$R4 935
11 TraesCS7B01G169000 chr7D 258975994 258976630 636 True 287.666667 370 95.947333 1259 1825 3 chr7D.!!$R2 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
531 534 1.905512 GTCCAAGTCGGTAGCCCAT 59.094 57.895 0.0 0.0 35.57 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1461 1469 0.795085 CGCTTGCTGGTTCTGAAGAG 59.205 55.0 0.0 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
531 534 1.905512 GTCCAAGTCGGTAGCCCAT 59.094 57.895 0.00 0.00 35.57 4.00
911 919 6.204882 AGCAAAAACTAAGACATACAGTGGAC 59.795 38.462 0.00 0.00 0.00 4.02
918 926 9.959721 AACTAAGACATACAGTGGACATTTTAT 57.040 29.630 0.00 0.00 0.00 1.40
951 959 7.925993 ACTATATATACAAGCGAGAGAGATGC 58.074 38.462 0.00 0.00 0.00 3.91
964 972 5.261209 AGAGAGATGCATGACTAAGTCAC 57.739 43.478 2.46 0.00 45.65 3.67
967 975 6.605194 AGAGAGATGCATGACTAAGTCACTTA 59.395 38.462 2.46 0.00 45.65 2.24
968 976 7.287466 AGAGAGATGCATGACTAAGTCACTTAT 59.713 37.037 2.46 0.00 45.65 1.73
969 977 8.470657 AGAGATGCATGACTAAGTCACTTATA 57.529 34.615 2.46 0.00 45.65 0.98
970 978 9.087871 AGAGATGCATGACTAAGTCACTTATAT 57.912 33.333 2.46 0.00 45.65 0.86
971 979 9.703892 GAGATGCATGACTAAGTCACTTATATT 57.296 33.333 2.46 0.00 45.65 1.28
986 994 9.903682 GTCACTTATATTAGTAAACCTATCGCA 57.096 33.333 0.00 0.00 0.00 5.10
988 996 9.909644 CACTTATATTAGTAAACCTATCGCAGT 57.090 33.333 0.00 0.00 0.00 4.40
990 998 9.275231 CTTATATTAGTAAACCTATCGCAGTCG 57.725 37.037 0.00 0.00 0.00 4.18
991 999 2.205307 AGTAAACCTATCGCAGTCGC 57.795 50.000 0.00 0.00 35.26 5.19
1009 1017 4.959596 GCCGGCCGATGCTCTCTC 62.960 72.222 30.73 0.00 37.74 3.20
1010 1018 3.222855 CCGGCCGATGCTCTCTCT 61.223 66.667 30.73 0.00 37.74 3.10
1011 1019 2.790791 CCGGCCGATGCTCTCTCTT 61.791 63.158 30.73 0.00 37.74 2.85
1012 1020 1.456196 CCGGCCGATGCTCTCTCTTA 61.456 60.000 30.73 0.00 37.74 2.10
1013 1021 0.600557 CGGCCGATGCTCTCTCTTAT 59.399 55.000 24.07 0.00 37.74 1.73
1014 1022 1.668337 CGGCCGATGCTCTCTCTTATG 60.668 57.143 24.07 0.00 37.74 1.90
1015 1023 1.615883 GGCCGATGCTCTCTCTTATGA 59.384 52.381 0.00 0.00 37.74 2.15
1016 1024 2.233431 GGCCGATGCTCTCTCTTATGAT 59.767 50.000 0.00 0.00 37.74 2.45
1017 1025 3.252400 GCCGATGCTCTCTCTTATGATG 58.748 50.000 0.00 0.00 33.53 3.07
1018 1026 3.252400 CCGATGCTCTCTCTTATGATGC 58.748 50.000 0.00 0.00 0.00 3.91
1019 1027 3.056678 CCGATGCTCTCTCTTATGATGCT 60.057 47.826 0.00 0.00 0.00 3.79
1020 1028 4.157472 CCGATGCTCTCTCTTATGATGCTA 59.843 45.833 0.00 0.00 0.00 3.49
1021 1029 5.334319 CGATGCTCTCTCTTATGATGCTAG 58.666 45.833 0.00 0.00 0.00 3.42
1022 1030 5.106197 CGATGCTCTCTCTTATGATGCTAGT 60.106 44.000 0.00 0.00 0.00 2.57
1023 1031 5.703978 TGCTCTCTCTTATGATGCTAGTC 57.296 43.478 0.00 0.00 0.00 2.59
1024 1032 5.384336 TGCTCTCTCTTATGATGCTAGTCT 58.616 41.667 0.00 0.00 0.00 3.24
1025 1033 5.473162 TGCTCTCTCTTATGATGCTAGTCTC 59.527 44.000 0.00 0.00 0.00 3.36
1026 1034 5.473162 GCTCTCTCTTATGATGCTAGTCTCA 59.527 44.000 0.00 0.00 0.00 3.27
1027 1035 6.151648 GCTCTCTCTTATGATGCTAGTCTCAT 59.848 42.308 12.07 12.07 36.19 2.90
1028 1036 7.451501 TCTCTCTTATGATGCTAGTCTCATG 57.548 40.000 15.40 0.00 34.14 3.07
1029 1037 6.433716 TCTCTCTTATGATGCTAGTCTCATGG 59.566 42.308 15.40 10.14 34.14 3.66
1030 1038 5.479724 TCTCTTATGATGCTAGTCTCATGGG 59.520 44.000 15.40 0.00 34.14 4.00
1031 1039 5.397360 TCTTATGATGCTAGTCTCATGGGA 58.603 41.667 15.40 0.00 34.14 4.37
1032 1040 5.840693 TCTTATGATGCTAGTCTCATGGGAA 59.159 40.000 15.40 5.41 34.14 3.97
1033 1041 6.327365 TCTTATGATGCTAGTCTCATGGGAAA 59.673 38.462 15.40 0.00 34.14 3.13
1034 1042 5.579753 ATGATGCTAGTCTCATGGGAAAT 57.420 39.130 0.00 0.00 31.04 2.17
1035 1043 4.965814 TGATGCTAGTCTCATGGGAAATC 58.034 43.478 0.00 0.00 0.00 2.17
1036 1044 4.657504 TGATGCTAGTCTCATGGGAAATCT 59.342 41.667 0.00 0.00 0.00 2.40
1037 1045 4.412796 TGCTAGTCTCATGGGAAATCTG 57.587 45.455 0.00 0.00 0.00 2.90
1038 1046 3.135348 TGCTAGTCTCATGGGAAATCTGG 59.865 47.826 0.00 0.00 0.00 3.86
1039 1047 3.389329 GCTAGTCTCATGGGAAATCTGGA 59.611 47.826 0.00 0.00 0.00 3.86
1040 1048 4.141620 GCTAGTCTCATGGGAAATCTGGAA 60.142 45.833 0.00 0.00 0.00 3.53
1041 1049 4.934797 AGTCTCATGGGAAATCTGGAAA 57.065 40.909 0.00 0.00 0.00 3.13
1042 1050 4.853007 AGTCTCATGGGAAATCTGGAAAG 58.147 43.478 0.00 0.00 0.00 2.62
1043 1051 4.537688 AGTCTCATGGGAAATCTGGAAAGA 59.462 41.667 0.00 0.00 0.00 2.52
1044 1052 5.014544 AGTCTCATGGGAAATCTGGAAAGAA 59.985 40.000 0.00 0.00 0.00 2.52
1045 1053 5.711976 GTCTCATGGGAAATCTGGAAAGAAA 59.288 40.000 0.00 0.00 0.00 2.52
1046 1054 5.948162 TCTCATGGGAAATCTGGAAAGAAAG 59.052 40.000 0.00 0.00 0.00 2.62
1047 1055 5.018809 TCATGGGAAATCTGGAAAGAAAGG 58.981 41.667 0.00 0.00 0.00 3.11
1048 1056 4.740154 TGGGAAATCTGGAAAGAAAGGA 57.260 40.909 0.00 0.00 0.00 3.36
1049 1057 5.073437 TGGGAAATCTGGAAAGAAAGGAA 57.927 39.130 0.00 0.00 0.00 3.36
1050 1058 5.654370 TGGGAAATCTGGAAAGAAAGGAAT 58.346 37.500 0.00 0.00 0.00 3.01
1051 1059 5.481473 TGGGAAATCTGGAAAGAAAGGAATG 59.519 40.000 0.00 0.00 0.00 2.67
1052 1060 5.105187 GGGAAATCTGGAAAGAAAGGAATGG 60.105 44.000 0.00 0.00 0.00 3.16
1053 1061 5.481824 GGAAATCTGGAAAGAAAGGAATGGT 59.518 40.000 0.00 0.00 0.00 3.55
1054 1062 6.350528 GGAAATCTGGAAAGAAAGGAATGGTC 60.351 42.308 0.00 0.00 0.00 4.02
1055 1063 3.674997 TCTGGAAAGAAAGGAATGGTCG 58.325 45.455 0.00 0.00 0.00 4.79
1056 1064 3.072476 TCTGGAAAGAAAGGAATGGTCGT 59.928 43.478 0.00 0.00 0.00 4.34
1057 1065 3.146066 TGGAAAGAAAGGAATGGTCGTG 58.854 45.455 0.00 0.00 0.00 4.35
1058 1066 3.146847 GGAAAGAAAGGAATGGTCGTGT 58.853 45.455 0.00 0.00 0.00 4.49
1059 1067 3.188667 GGAAAGAAAGGAATGGTCGTGTC 59.811 47.826 0.00 0.00 0.00 3.67
1060 1068 3.771577 AAGAAAGGAATGGTCGTGTCT 57.228 42.857 0.00 0.00 37.75 3.41
1061 1069 3.771577 AGAAAGGAATGGTCGTGTCTT 57.228 42.857 0.00 0.00 33.27 3.01
1062 1070 4.086706 AGAAAGGAATGGTCGTGTCTTT 57.913 40.909 0.00 0.00 33.27 2.52
1063 1071 5.223449 AGAAAGGAATGGTCGTGTCTTTA 57.777 39.130 0.00 0.00 33.27 1.85
1064 1072 5.238583 AGAAAGGAATGGTCGTGTCTTTAG 58.761 41.667 0.00 0.00 33.27 1.85
1065 1073 3.611766 AGGAATGGTCGTGTCTTTAGG 57.388 47.619 0.00 0.00 0.00 2.69
1066 1074 2.236395 AGGAATGGTCGTGTCTTTAGGG 59.764 50.000 0.00 0.00 0.00 3.53
1067 1075 2.629051 GAATGGTCGTGTCTTTAGGGG 58.371 52.381 0.00 0.00 0.00 4.79
1068 1076 0.252197 ATGGTCGTGTCTTTAGGGGC 59.748 55.000 0.00 0.00 0.00 5.80
1069 1077 1.122632 TGGTCGTGTCTTTAGGGGCA 61.123 55.000 0.00 0.00 0.00 5.36
1070 1078 0.672711 GGTCGTGTCTTTAGGGGCAC 60.673 60.000 0.00 0.00 0.00 5.01
1090 1098 3.697747 CGGTGCCGGTGGAGGTTA 61.698 66.667 1.90 0.00 35.56 2.85
1091 1099 2.995547 GGTGCCGGTGGAGGTTAT 59.004 61.111 1.90 0.00 0.00 1.89
1092 1100 1.301954 GGTGCCGGTGGAGGTTATT 59.698 57.895 1.90 0.00 0.00 1.40
1093 1101 1.029947 GGTGCCGGTGGAGGTTATTG 61.030 60.000 1.90 0.00 0.00 1.90
1094 1102 0.322187 GTGCCGGTGGAGGTTATTGT 60.322 55.000 1.90 0.00 0.00 2.71
1095 1103 0.402504 TGCCGGTGGAGGTTATTGTT 59.597 50.000 1.90 0.00 0.00 2.83
1096 1104 0.808755 GCCGGTGGAGGTTATTGTTG 59.191 55.000 1.90 0.00 0.00 3.33
1097 1105 0.808755 CCGGTGGAGGTTATTGTTGC 59.191 55.000 0.00 0.00 0.00 4.17
1098 1106 1.613255 CCGGTGGAGGTTATTGTTGCT 60.613 52.381 0.00 0.00 0.00 3.91
1099 1107 2.355310 CCGGTGGAGGTTATTGTTGCTA 60.355 50.000 0.00 0.00 0.00 3.49
1100 1108 3.340034 CGGTGGAGGTTATTGTTGCTAA 58.660 45.455 0.00 0.00 0.00 3.09
1101 1109 3.754323 CGGTGGAGGTTATTGTTGCTAAA 59.246 43.478 0.00 0.00 0.00 1.85
1102 1110 4.216687 CGGTGGAGGTTATTGTTGCTAAAA 59.783 41.667 0.00 0.00 0.00 1.52
1103 1111 5.105917 CGGTGGAGGTTATTGTTGCTAAAAT 60.106 40.000 0.00 0.00 0.00 1.82
1104 1112 6.571537 CGGTGGAGGTTATTGTTGCTAAAATT 60.572 38.462 0.00 0.00 0.00 1.82
1105 1113 7.362229 CGGTGGAGGTTATTGTTGCTAAAATTA 60.362 37.037 0.00 0.00 0.00 1.40
1106 1114 8.308207 GGTGGAGGTTATTGTTGCTAAAATTAA 58.692 33.333 0.00 0.00 0.00 1.40
1107 1115 9.699703 GTGGAGGTTATTGTTGCTAAAATTAAA 57.300 29.630 0.00 0.00 0.00 1.52
1108 1116 9.921637 TGGAGGTTATTGTTGCTAAAATTAAAG 57.078 29.630 0.00 0.00 0.00 1.85
1125 1133 9.965824 AAAATTAAAGATGAGTACAAGTTGTGG 57.034 29.630 18.90 0.00 0.00 4.17
1126 1134 8.691661 AATTAAAGATGAGTACAAGTTGTGGT 57.308 30.769 18.90 5.21 0.00 4.16
1127 1135 7.490962 TTAAAGATGAGTACAAGTTGTGGTG 57.509 36.000 18.90 0.00 0.00 4.17
1128 1136 4.689612 AGATGAGTACAAGTTGTGGTGT 57.310 40.909 18.90 0.00 0.00 4.16
1129 1137 5.036117 AGATGAGTACAAGTTGTGGTGTT 57.964 39.130 18.90 0.75 0.00 3.32
1130 1138 5.437060 AGATGAGTACAAGTTGTGGTGTTT 58.563 37.500 18.90 0.00 0.00 2.83
1131 1139 5.527582 AGATGAGTACAAGTTGTGGTGTTTC 59.472 40.000 18.90 8.32 0.00 2.78
1132 1140 3.619483 TGAGTACAAGTTGTGGTGTTTCG 59.381 43.478 18.90 0.00 0.00 3.46
1133 1141 2.353579 AGTACAAGTTGTGGTGTTTCGC 59.646 45.455 18.90 0.00 0.00 4.70
1134 1142 0.098025 ACAAGTTGTGGTGTTTCGCG 59.902 50.000 7.96 0.00 0.00 5.87
1135 1143 0.591236 CAAGTTGTGGTGTTTCGCGG 60.591 55.000 6.13 0.00 0.00 6.46
1136 1144 1.720694 AAGTTGTGGTGTTTCGCGGG 61.721 55.000 6.13 0.00 0.00 6.13
1137 1145 2.902846 TTGTGGTGTTTCGCGGGG 60.903 61.111 6.13 0.00 0.00 5.73
1138 1146 4.939368 TGTGGTGTTTCGCGGGGG 62.939 66.667 6.13 0.00 0.00 5.40
1141 1149 4.397832 GGTGTTTCGCGGGGGCTA 62.398 66.667 6.13 0.00 0.00 3.93
1142 1150 2.358984 GTGTTTCGCGGGGGCTAA 60.359 61.111 6.13 0.00 0.00 3.09
1143 1151 2.046700 TGTTTCGCGGGGGCTAAG 60.047 61.111 6.13 0.00 0.00 2.18
1144 1152 2.046604 GTTTCGCGGGGGCTAAGT 60.047 61.111 6.13 0.00 0.00 2.24
1145 1153 2.046700 TTTCGCGGGGGCTAAGTG 60.047 61.111 6.13 0.00 0.00 3.16
1146 1154 4.770874 TTCGCGGGGGCTAAGTGC 62.771 66.667 6.13 0.00 41.94 4.40
1148 1156 4.778143 CGCGGGGGCTAAGTGCTT 62.778 66.667 0.00 0.00 42.39 3.91
1149 1157 3.134127 GCGGGGGCTAAGTGCTTG 61.134 66.667 0.00 0.00 42.39 4.01
1150 1158 2.668632 CGGGGGCTAAGTGCTTGA 59.331 61.111 0.00 0.00 42.39 3.02
1151 1159 1.450312 CGGGGGCTAAGTGCTTGAG 60.450 63.158 0.00 0.00 42.39 3.02
1152 1160 1.685820 GGGGGCTAAGTGCTTGAGT 59.314 57.895 0.00 0.00 42.39 3.41
1153 1161 0.909623 GGGGGCTAAGTGCTTGAGTA 59.090 55.000 0.00 0.00 42.39 2.59
1154 1162 1.280998 GGGGGCTAAGTGCTTGAGTAA 59.719 52.381 0.00 0.00 42.39 2.24
1155 1163 2.092375 GGGGGCTAAGTGCTTGAGTAAT 60.092 50.000 0.00 0.00 42.39 1.89
1156 1164 2.945668 GGGGCTAAGTGCTTGAGTAATG 59.054 50.000 0.00 0.00 42.39 1.90
1157 1165 3.610911 GGGCTAAGTGCTTGAGTAATGT 58.389 45.455 0.00 0.00 42.39 2.71
1158 1166 4.383770 GGGGCTAAGTGCTTGAGTAATGTA 60.384 45.833 0.00 0.00 42.39 2.29
1159 1167 5.183228 GGGCTAAGTGCTTGAGTAATGTAA 58.817 41.667 0.00 0.00 42.39 2.41
1160 1168 5.823045 GGGCTAAGTGCTTGAGTAATGTAAT 59.177 40.000 0.00 0.00 42.39 1.89
1161 1169 6.238484 GGGCTAAGTGCTTGAGTAATGTAATG 60.238 42.308 0.00 0.00 42.39 1.90
1162 1170 6.195165 GCTAAGTGCTTGAGTAATGTAATGC 58.805 40.000 0.00 0.00 38.95 3.56
1163 1171 5.567138 AAGTGCTTGAGTAATGTAATGCC 57.433 39.130 0.00 0.00 0.00 4.40
1164 1172 3.623060 AGTGCTTGAGTAATGTAATGCCG 59.377 43.478 0.00 0.00 0.00 5.69
1165 1173 2.354510 TGCTTGAGTAATGTAATGCCGC 59.645 45.455 0.00 0.00 0.00 6.53
1166 1174 2.599848 GCTTGAGTAATGTAATGCCGCG 60.600 50.000 0.00 0.00 0.00 6.46
1167 1175 2.588027 TGAGTAATGTAATGCCGCGA 57.412 45.000 8.23 0.00 0.00 5.87
1168 1176 2.469826 TGAGTAATGTAATGCCGCGAG 58.530 47.619 8.23 0.00 0.00 5.03
1169 1177 2.100087 TGAGTAATGTAATGCCGCGAGA 59.900 45.455 8.23 0.00 0.00 4.04
1170 1178 2.726760 GAGTAATGTAATGCCGCGAGAG 59.273 50.000 8.23 0.00 0.00 3.20
1171 1179 2.100916 AGTAATGTAATGCCGCGAGAGT 59.899 45.455 8.23 0.00 0.00 3.24
1172 1180 2.882927 AATGTAATGCCGCGAGAGTA 57.117 45.000 8.23 0.00 0.00 2.59
1173 1181 2.882927 ATGTAATGCCGCGAGAGTAA 57.117 45.000 8.23 0.00 0.00 2.24
1174 1182 2.882927 TGTAATGCCGCGAGAGTAAT 57.117 45.000 8.23 0.00 0.00 1.89
1175 1183 2.469826 TGTAATGCCGCGAGAGTAATG 58.530 47.619 8.23 0.00 0.00 1.90
1176 1184 1.192534 GTAATGCCGCGAGAGTAATGC 59.807 52.381 8.23 0.00 0.00 3.56
1181 1189 2.359792 CGCGAGAGTAATGCGTTGT 58.640 52.632 0.00 0.00 46.29 3.32
1182 1190 1.541475 CGCGAGAGTAATGCGTTGTA 58.459 50.000 0.00 0.00 46.29 2.41
1183 1191 1.915350 CGCGAGAGTAATGCGTTGTAA 59.085 47.619 0.00 0.00 46.29 2.41
1184 1192 2.534349 CGCGAGAGTAATGCGTTGTAAT 59.466 45.455 0.00 0.00 46.29 1.89
1185 1193 3.000078 CGCGAGAGTAATGCGTTGTAATT 60.000 43.478 0.00 0.00 46.29 1.40
1186 1194 4.506217 GCGAGAGTAATGCGTTGTAATTC 58.494 43.478 0.08 0.00 0.00 2.17
1187 1195 4.737598 CGAGAGTAATGCGTTGTAATTCG 58.262 43.478 0.08 1.22 0.00 3.34
1188 1196 4.317139 CGAGAGTAATGCGTTGTAATTCGG 60.317 45.833 0.08 0.00 0.00 4.30
1189 1197 3.308866 AGAGTAATGCGTTGTAATTCGGC 59.691 43.478 0.08 0.00 0.00 5.54
1190 1198 2.353579 AGTAATGCGTTGTAATTCGGCC 59.646 45.455 0.08 0.00 0.00 6.13
1191 1199 1.459450 AATGCGTTGTAATTCGGCCT 58.541 45.000 0.00 0.00 0.00 5.19
1192 1200 1.459450 ATGCGTTGTAATTCGGCCTT 58.541 45.000 0.00 0.00 0.00 4.35
1193 1201 1.240256 TGCGTTGTAATTCGGCCTTT 58.760 45.000 0.00 0.00 0.00 3.11
1194 1202 1.068885 TGCGTTGTAATTCGGCCTTTG 60.069 47.619 0.00 0.00 0.00 2.77
1195 1203 1.731098 GCGTTGTAATTCGGCCTTTGG 60.731 52.381 0.00 0.00 0.00 3.28
1207 1215 2.743636 GCCTTTGGCCTTAAACCTTC 57.256 50.000 3.32 0.00 44.06 3.46
1208 1216 2.248248 GCCTTTGGCCTTAAACCTTCT 58.752 47.619 3.32 0.00 44.06 2.85
1209 1217 2.632996 GCCTTTGGCCTTAAACCTTCTT 59.367 45.455 3.32 0.00 44.06 2.52
1210 1218 3.306088 GCCTTTGGCCTTAAACCTTCTTC 60.306 47.826 3.32 0.00 44.06 2.87
1211 1219 4.152647 CCTTTGGCCTTAAACCTTCTTCT 58.847 43.478 3.32 0.00 0.00 2.85
1212 1220 4.588951 CCTTTGGCCTTAAACCTTCTTCTT 59.411 41.667 3.32 0.00 0.00 2.52
1213 1221 5.773176 CCTTTGGCCTTAAACCTTCTTCTTA 59.227 40.000 3.32 0.00 0.00 2.10
1214 1222 6.437477 CCTTTGGCCTTAAACCTTCTTCTTAT 59.563 38.462 3.32 0.00 0.00 1.73
1215 1223 7.039011 CCTTTGGCCTTAAACCTTCTTCTTATT 60.039 37.037 3.32 0.00 0.00 1.40
1216 1224 7.462571 TTGGCCTTAAACCTTCTTCTTATTC 57.537 36.000 3.32 0.00 0.00 1.75
1217 1225 6.548321 TGGCCTTAAACCTTCTTCTTATTCA 58.452 36.000 3.32 0.00 0.00 2.57
1218 1226 7.007723 TGGCCTTAAACCTTCTTCTTATTCAA 58.992 34.615 3.32 0.00 0.00 2.69
1219 1227 7.673926 TGGCCTTAAACCTTCTTCTTATTCAAT 59.326 33.333 3.32 0.00 0.00 2.57
1220 1228 7.976175 GGCCTTAAACCTTCTTCTTATTCAATG 59.024 37.037 0.00 0.00 0.00 2.82
1221 1229 8.739972 GCCTTAAACCTTCTTCTTATTCAATGA 58.260 33.333 0.00 0.00 0.00 2.57
1226 1234 9.971922 AAACCTTCTTCTTATTCAATGAAAGTG 57.028 29.630 0.00 0.00 0.00 3.16
1227 1235 8.115490 ACCTTCTTCTTATTCAATGAAAGTGG 57.885 34.615 0.00 3.07 29.44 4.00
1228 1236 7.031975 CCTTCTTCTTATTCAATGAAAGTGGC 58.968 38.462 0.00 0.00 29.44 5.01
1229 1237 7.309377 CCTTCTTCTTATTCAATGAAAGTGGCA 60.309 37.037 0.00 0.00 29.44 4.92
1230 1238 7.523293 TCTTCTTATTCAATGAAAGTGGCAA 57.477 32.000 0.00 0.00 29.44 4.52
1231 1239 7.596494 TCTTCTTATTCAATGAAAGTGGCAAG 58.404 34.615 0.00 0.00 29.44 4.01
1232 1240 6.899393 TCTTATTCAATGAAAGTGGCAAGT 57.101 33.333 0.00 0.00 29.44 3.16
1233 1241 6.913170 TCTTATTCAATGAAAGTGGCAAGTC 58.087 36.000 0.00 0.00 29.44 3.01
1234 1242 6.716628 TCTTATTCAATGAAAGTGGCAAGTCT 59.283 34.615 0.00 0.00 29.44 3.24
1235 1243 5.796424 ATTCAATGAAAGTGGCAAGTCTT 57.204 34.783 0.00 0.00 29.44 3.01
1236 1244 5.596836 TTCAATGAAAGTGGCAAGTCTTT 57.403 34.783 1.63 1.63 36.72 2.52
1237 1245 5.596836 TCAATGAAAGTGGCAAGTCTTTT 57.403 34.783 3.47 0.00 34.60 2.27
1238 1246 5.350633 TCAATGAAAGTGGCAAGTCTTTTG 58.649 37.500 3.47 0.00 34.60 2.44
1239 1247 3.163630 TGAAAGTGGCAAGTCTTTTGC 57.836 42.857 3.39 3.39 44.22 3.68
1244 1252 4.198087 GCAAGTCTTTTGCCCCCT 57.802 55.556 0.54 0.00 39.38 4.79
1245 1253 2.440946 GCAAGTCTTTTGCCCCCTT 58.559 52.632 0.54 0.00 39.38 3.95
1246 1254 0.758734 GCAAGTCTTTTGCCCCCTTT 59.241 50.000 0.54 0.00 39.38 3.11
1247 1255 1.270305 GCAAGTCTTTTGCCCCCTTTC 60.270 52.381 0.54 0.00 39.38 2.62
1248 1256 2.038659 CAAGTCTTTTGCCCCCTTTCA 58.961 47.619 0.00 0.00 0.00 2.69
1249 1257 2.433970 CAAGTCTTTTGCCCCCTTTCAA 59.566 45.455 0.00 0.00 0.00 2.69
1250 1258 2.758130 AGTCTTTTGCCCCCTTTCAAA 58.242 42.857 0.00 0.00 0.00 2.69
1251 1259 3.111484 AGTCTTTTGCCCCCTTTCAAAA 58.889 40.909 0.00 0.00 39.13 2.44
1252 1260 3.521531 AGTCTTTTGCCCCCTTTCAAAAA 59.478 39.130 0.00 0.00 40.36 1.94
1302 1310 4.974399 TCTGCTAAGAGGATACGAGATCA 58.026 43.478 0.00 0.00 46.39 2.92
1451 1459 4.916831 GCTCATGTCACTCTCGATCAATAG 59.083 45.833 0.00 0.00 0.00 1.73
1458 1466 4.884164 TCACTCTCGATCAATAGAGCAGAA 59.116 41.667 13.82 0.00 42.50 3.02
1461 1469 6.019961 CACTCTCGATCAATAGAGCAGAAAAC 60.020 42.308 13.82 0.00 42.50 2.43
1485 1493 0.674581 CAGAACCAGCAAGCGATCCA 60.675 55.000 0.00 0.00 0.00 3.41
1486 1494 0.674895 AGAACCAGCAAGCGATCCAC 60.675 55.000 0.00 0.00 0.00 4.02
1576 1589 0.886043 AAAAACTGGCCCGACCGTAC 60.886 55.000 0.00 0.00 43.94 3.67
1654 1807 1.131638 AGGCCGACATCCATACATGT 58.868 50.000 2.69 2.69 39.84 3.21
1682 1835 6.198966 GCGAATTAATTTGGACCAATCATCAC 59.801 38.462 15.74 0.00 0.00 3.06
1718 1871 5.191727 TGTTCTACATGGATGGGTCATTT 57.808 39.130 0.00 0.00 0.00 2.32
1765 1918 3.926527 TGATACGCTGATCAGTTGTTGTC 59.073 43.478 23.38 19.90 32.05 3.18
1772 1925 5.501413 CGCTGATCAGTTGTTGTCATCATAC 60.501 44.000 23.38 0.63 0.00 2.39
1826 1979 2.841442 ACTTCAGTCACACTAAGGCC 57.159 50.000 0.00 0.00 0.00 5.19
1827 1980 2.330216 ACTTCAGTCACACTAAGGCCT 58.670 47.619 0.00 0.00 0.00 5.19
1828 1981 3.507411 ACTTCAGTCACACTAAGGCCTA 58.493 45.455 5.16 0.00 0.00 3.93
1829 1982 3.901844 ACTTCAGTCACACTAAGGCCTAA 59.098 43.478 5.16 0.00 0.00 2.69
1830 1983 4.532521 ACTTCAGTCACACTAAGGCCTAAT 59.467 41.667 5.16 0.00 0.00 1.73
1831 1984 5.013183 ACTTCAGTCACACTAAGGCCTAATT 59.987 40.000 5.16 0.00 0.00 1.40
1832 1985 5.499004 TCAGTCACACTAAGGCCTAATTT 57.501 39.130 5.16 0.00 0.00 1.82
1833 1986 5.245531 TCAGTCACACTAAGGCCTAATTTG 58.754 41.667 5.16 3.60 0.00 2.32
1834 1987 4.396166 CAGTCACACTAAGGCCTAATTTGG 59.604 45.833 5.16 1.04 0.00 3.28
1835 1988 4.042934 AGTCACACTAAGGCCTAATTTGGT 59.957 41.667 5.16 0.00 0.00 3.67
1836 1989 4.765339 GTCACACTAAGGCCTAATTTGGTT 59.235 41.667 5.16 0.00 0.00 3.67
1837 1990 4.764823 TCACACTAAGGCCTAATTTGGTTG 59.235 41.667 5.16 0.50 0.00 3.77
1838 1991 3.509967 ACACTAAGGCCTAATTTGGTTGC 59.490 43.478 5.16 0.00 0.00 4.17
1839 1992 3.509575 CACTAAGGCCTAATTTGGTTGCA 59.490 43.478 5.16 0.00 0.00 4.08
1840 1993 4.021544 CACTAAGGCCTAATTTGGTTGCAA 60.022 41.667 5.16 0.00 0.00 4.08
1841 1994 4.591072 ACTAAGGCCTAATTTGGTTGCAAA 59.409 37.500 5.16 0.00 0.00 3.68
1842 1995 3.683365 AGGCCTAATTTGGTTGCAAAG 57.317 42.857 1.29 0.00 0.00 2.77
1843 1996 2.302733 AGGCCTAATTTGGTTGCAAAGG 59.697 45.455 1.29 3.39 0.00 3.11
1844 1997 2.615240 GGCCTAATTTGGTTGCAAAGGG 60.615 50.000 11.95 3.09 0.00 3.95
1845 1998 2.301583 GCCTAATTTGGTTGCAAAGGGA 59.698 45.455 11.95 0.00 0.00 4.20
1846 1999 3.244387 GCCTAATTTGGTTGCAAAGGGAA 60.244 43.478 11.95 1.65 0.00 3.97
1847 2000 4.745172 GCCTAATTTGGTTGCAAAGGGAAA 60.745 41.667 11.95 4.97 0.00 3.13
1848 2001 4.996758 CCTAATTTGGTTGCAAAGGGAAAG 59.003 41.667 0.00 0.00 0.00 2.62
1849 2002 2.323968 TTTGGTTGCAAAGGGAAAGC 57.676 45.000 0.00 0.00 0.00 3.51
1850 2003 1.198713 TTGGTTGCAAAGGGAAAGCA 58.801 45.000 0.00 0.00 36.32 3.91
1851 2004 1.422531 TGGTTGCAAAGGGAAAGCAT 58.577 45.000 0.00 0.00 38.19 3.79
1852 2005 1.344114 TGGTTGCAAAGGGAAAGCATC 59.656 47.619 0.00 0.00 38.19 3.91
1865 2018 5.151297 GGAAAGCATCCCAGAAATTTTCA 57.849 39.130 11.53 0.00 43.00 2.69
1866 2019 5.173664 GGAAAGCATCCCAGAAATTTTCAG 58.826 41.667 11.53 3.42 43.00 3.02
1867 2020 4.813750 AAGCATCCCAGAAATTTTCAGG 57.186 40.909 12.38 12.38 36.21 3.86
1868 2021 4.051661 AGCATCCCAGAAATTTTCAGGA 57.948 40.909 19.10 18.52 38.51 3.86
1869 2022 4.021916 AGCATCCCAGAAATTTTCAGGAG 58.978 43.478 19.10 13.74 38.51 3.69
1870 2023 3.131755 GCATCCCAGAAATTTTCAGGAGG 59.868 47.826 19.10 19.65 38.51 4.30
1871 2024 2.807676 TCCCAGAAATTTTCAGGAGGC 58.192 47.619 19.10 0.00 38.51 4.70
1872 2025 1.827344 CCCAGAAATTTTCAGGAGGCC 59.173 52.381 19.10 0.00 38.51 5.19
1873 2026 1.827344 CCAGAAATTTTCAGGAGGCCC 59.173 52.381 13.75 0.00 38.51 5.80
1874 2027 1.827344 CAGAAATTTTCAGGAGGCCCC 59.173 52.381 11.53 0.00 0.00 5.80
1876 2029 2.103373 GAAATTTTCAGGAGGCCCCTC 58.897 52.381 9.65 5.75 45.60 4.30
1877 2030 1.387119 AATTTTCAGGAGGCCCCTCT 58.613 50.000 13.65 0.00 45.60 3.69
1878 2031 0.922626 ATTTTCAGGAGGCCCCTCTC 59.077 55.000 13.65 4.79 45.60 3.20
1886 2039 4.404098 GGCCCCTCTCCGCGAAAA 62.404 66.667 8.23 0.00 0.00 2.29
1887 2040 2.359478 GCCCCTCTCCGCGAAAAA 60.359 61.111 8.23 0.00 0.00 1.94
1903 2056 2.439245 AAAAACGCTCCCTCCCCC 59.561 61.111 0.00 0.00 0.00 5.40
1969 2122 3.775654 CGGCCCACTCCCTCTCAC 61.776 72.222 0.00 0.00 0.00 3.51
1970 2123 3.403558 GGCCCACTCCCTCTCACC 61.404 72.222 0.00 0.00 0.00 4.02
1971 2124 3.403558 GCCCACTCCCTCTCACCC 61.404 72.222 0.00 0.00 0.00 4.61
1972 2125 2.689034 CCCACTCCCTCTCACCCC 60.689 72.222 0.00 0.00 0.00 4.95
1973 2126 2.689034 CCACTCCCTCTCACCCCC 60.689 72.222 0.00 0.00 0.00 5.40
1974 2127 2.122729 CACTCCCTCTCACCCCCA 59.877 66.667 0.00 0.00 0.00 4.96
1975 2128 1.307343 CACTCCCTCTCACCCCCAT 60.307 63.158 0.00 0.00 0.00 4.00
1976 2129 1.003573 ACTCCCTCTCACCCCCATC 59.996 63.158 0.00 0.00 0.00 3.51
1977 2130 1.768077 CTCCCTCTCACCCCCATCC 60.768 68.421 0.00 0.00 0.00 3.51
1978 2131 3.164269 CCCTCTCACCCCCATCCG 61.164 72.222 0.00 0.00 0.00 4.18
1979 2132 3.866582 CCTCTCACCCCCATCCGC 61.867 72.222 0.00 0.00 0.00 5.54
1980 2133 2.765807 CTCTCACCCCCATCCGCT 60.766 66.667 0.00 0.00 0.00 5.52
1981 2134 2.285368 TCTCACCCCCATCCGCTT 60.285 61.111 0.00 0.00 0.00 4.68
1982 2135 2.190578 CTCACCCCCATCCGCTTC 59.809 66.667 0.00 0.00 0.00 3.86
1983 2136 3.740128 CTCACCCCCATCCGCTTCG 62.740 68.421 0.00 0.00 0.00 3.79
2033 2186 4.802051 CGTGCCCCAGGGATGGTG 62.802 72.222 7.25 0.00 37.50 4.17
2034 2187 4.447342 GTGCCCCAGGGATGGTGG 62.447 72.222 7.25 0.00 37.50 4.61
2053 2206 4.660938 GGCGGGGCTCCTTTGTGT 62.661 66.667 0.00 0.00 0.00 3.72
2054 2207 3.056328 GCGGGGCTCCTTTGTGTC 61.056 66.667 0.00 0.00 0.00 3.67
2055 2208 2.742372 CGGGGCTCCTTTGTGTCG 60.742 66.667 0.00 0.00 0.00 4.35
2056 2209 2.359975 GGGGCTCCTTTGTGTCGG 60.360 66.667 0.00 0.00 0.00 4.79
2057 2210 3.056328 GGGCTCCTTTGTGTCGGC 61.056 66.667 0.00 0.00 0.00 5.54
2058 2211 3.423154 GGCTCCTTTGTGTCGGCG 61.423 66.667 0.00 0.00 0.00 6.46
2059 2212 4.090057 GCTCCTTTGTGTCGGCGC 62.090 66.667 0.00 0.00 0.00 6.53
2060 2213 2.357517 CTCCTTTGTGTCGGCGCT 60.358 61.111 7.64 0.00 0.00 5.92
2061 2214 2.357034 TCCTTTGTGTCGGCGCTC 60.357 61.111 7.64 0.00 0.00 5.03
2062 2215 3.777925 CCTTTGTGTCGGCGCTCG 61.778 66.667 7.64 9.90 40.90 5.03
2063 2216 4.430423 CTTTGTGTCGGCGCTCGC 62.430 66.667 7.64 5.60 39.05 5.03
2079 2232 4.321966 GCCAGCTAGCGGGGATCC 62.322 72.222 31.31 13.82 0.00 3.36
2080 2233 2.844362 CCAGCTAGCGGGGATCCA 60.844 66.667 24.69 0.00 0.00 3.41
2081 2234 2.219875 CCAGCTAGCGGGGATCCAT 61.220 63.158 24.69 0.00 0.00 3.41
2082 2235 1.294780 CAGCTAGCGGGGATCCATC 59.705 63.158 15.23 4.07 0.00 3.51
2083 2236 1.915769 AGCTAGCGGGGATCCATCC 60.916 63.158 15.23 5.45 46.41 3.51
2092 2245 4.286320 GATCCATCCGACGGCGCT 62.286 66.667 4.27 0.00 35.83 5.92
2093 2246 4.592192 ATCCATCCGACGGCGCTG 62.592 66.667 16.39 16.39 35.83 5.18
2100 2253 3.918220 CGACGGCGCTGCAAGATC 61.918 66.667 18.15 4.78 34.07 2.75
2101 2254 3.567797 GACGGCGCTGCAAGATCC 61.568 66.667 18.15 0.00 34.07 3.36
2105 2258 3.869272 GCGCTGCAAGATCCGGTG 61.869 66.667 0.00 0.00 34.07 4.94
2106 2259 2.434884 CGCTGCAAGATCCGGTGT 60.435 61.111 0.00 0.00 34.07 4.16
2107 2260 2.743752 CGCTGCAAGATCCGGTGTG 61.744 63.158 0.00 0.00 34.07 3.82
2108 2261 2.401766 GCTGCAAGATCCGGTGTGG 61.402 63.158 0.00 0.00 34.07 4.17
2109 2262 1.003355 CTGCAAGATCCGGTGTGGT 60.003 57.895 0.00 0.00 35.49 4.16
2110 2263 1.300971 CTGCAAGATCCGGTGTGGTG 61.301 60.000 0.00 0.00 35.49 4.17
2111 2264 2.040544 GCAAGATCCGGTGTGGTGG 61.041 63.158 0.00 0.00 39.52 4.61
2112 2265 2.040544 CAAGATCCGGTGTGGTGGC 61.041 63.158 0.00 0.00 39.52 5.01
2113 2266 3.268103 AAGATCCGGTGTGGTGGCC 62.268 63.158 0.00 0.00 39.52 5.36
2114 2267 4.796495 GATCCGGTGTGGTGGCCC 62.796 72.222 0.00 0.00 39.52 5.80
2118 2271 3.953775 CGGTGTGGTGGCCCTCTT 61.954 66.667 0.00 0.00 0.00 2.85
2119 2272 2.034221 GGTGTGGTGGCCCTCTTC 59.966 66.667 0.00 0.00 0.00 2.87
2120 2273 2.358737 GTGTGGTGGCCCTCTTCG 60.359 66.667 0.00 0.00 0.00 3.79
2121 2274 4.329545 TGTGGTGGCCCTCTTCGC 62.330 66.667 0.00 0.00 0.00 4.70
2151 2304 4.554036 GTGGATCCGGGGCTGCTC 62.554 72.222 7.39 0.00 0.00 4.26
2153 2306 4.247380 GGATCCGGGGCTGCTCAG 62.247 72.222 0.00 0.00 0.00 3.35
2154 2307 4.247380 GATCCGGGGCTGCTCAGG 62.247 72.222 12.89 12.89 0.00 3.86
2161 2314 4.925861 GGCTGCTCAGGCCGGATC 62.926 72.222 5.05 2.27 46.99 3.36
2162 2315 4.925861 GCTGCTCAGGCCGGATCC 62.926 72.222 5.05 0.00 37.74 3.36
2163 2316 4.598894 CTGCTCAGGCCGGATCCG 62.599 72.222 27.65 27.65 37.74 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
964 972 9.275231 CGACTGCGATAGGTTTACTAATATAAG 57.725 37.037 0.00 0.00 40.82 1.73
967 975 6.091437 GCGACTGCGATAGGTTTACTAATAT 58.909 40.000 0.00 0.00 40.82 1.28
968 976 5.455392 GCGACTGCGATAGGTTTACTAATA 58.545 41.667 0.00 0.00 40.82 0.98
969 977 4.296690 GCGACTGCGATAGGTTTACTAAT 58.703 43.478 0.00 0.00 40.82 1.73
970 978 3.699067 GCGACTGCGATAGGTTTACTAA 58.301 45.455 0.00 0.00 40.82 2.24
971 979 3.344904 GCGACTGCGATAGGTTTACTA 57.655 47.619 0.00 0.00 40.82 1.82
972 980 2.205307 GCGACTGCGATAGGTTTACT 57.795 50.000 0.00 0.00 40.82 2.24
992 1000 4.959596 GAGAGAGCATCGGCCGGC 62.960 72.222 27.83 21.18 42.67 6.13
993 1001 1.456196 TAAGAGAGAGCATCGGCCGG 61.456 60.000 27.83 11.74 42.67 6.13
994 1002 0.600557 ATAAGAGAGAGCATCGGCCG 59.399 55.000 22.12 22.12 42.67 6.13
995 1003 1.615883 TCATAAGAGAGAGCATCGGCC 59.384 52.381 0.00 0.00 42.67 6.13
996 1004 3.252400 CATCATAAGAGAGAGCATCGGC 58.748 50.000 0.00 0.00 42.67 5.54
997 1005 3.056678 AGCATCATAAGAGAGAGCATCGG 60.057 47.826 0.00 0.00 42.67 4.18
998 1006 4.177165 AGCATCATAAGAGAGAGCATCG 57.823 45.455 0.00 0.00 42.67 3.84
999 1007 6.151648 AGACTAGCATCATAAGAGAGAGCATC 59.848 42.308 0.00 0.00 0.00 3.91
1000 1008 6.012113 AGACTAGCATCATAAGAGAGAGCAT 58.988 40.000 0.00 0.00 0.00 3.79
1001 1009 5.384336 AGACTAGCATCATAAGAGAGAGCA 58.616 41.667 0.00 0.00 0.00 4.26
1002 1010 5.473162 TGAGACTAGCATCATAAGAGAGAGC 59.527 44.000 0.00 0.00 0.00 4.09
1003 1011 7.362315 CCATGAGACTAGCATCATAAGAGAGAG 60.362 44.444 9.33 0.00 34.42 3.20
1004 1012 6.433716 CCATGAGACTAGCATCATAAGAGAGA 59.566 42.308 9.33 0.00 34.42 3.10
1005 1013 6.350361 CCCATGAGACTAGCATCATAAGAGAG 60.350 46.154 9.33 0.00 34.42 3.20
1006 1014 5.479724 CCCATGAGACTAGCATCATAAGAGA 59.520 44.000 9.33 0.00 34.42 3.10
1007 1015 5.479724 TCCCATGAGACTAGCATCATAAGAG 59.520 44.000 9.33 0.00 34.42 2.85
1008 1016 5.397360 TCCCATGAGACTAGCATCATAAGA 58.603 41.667 9.33 7.16 34.42 2.10
1009 1017 5.735285 TCCCATGAGACTAGCATCATAAG 57.265 43.478 9.33 5.39 34.42 1.73
1010 1018 6.499106 TTTCCCATGAGACTAGCATCATAA 57.501 37.500 9.33 0.44 34.42 1.90
1011 1019 6.499699 AGATTTCCCATGAGACTAGCATCATA 59.500 38.462 9.33 0.00 34.42 2.15
1012 1020 5.310068 AGATTTCCCATGAGACTAGCATCAT 59.690 40.000 0.00 4.78 36.60 2.45
1013 1021 4.657504 AGATTTCCCATGAGACTAGCATCA 59.342 41.667 0.00 0.35 0.00 3.07
1014 1022 4.996122 CAGATTTCCCATGAGACTAGCATC 59.004 45.833 0.00 0.00 0.00 3.91
1015 1023 4.202440 CCAGATTTCCCATGAGACTAGCAT 60.202 45.833 0.00 0.00 0.00 3.79
1016 1024 3.135348 CCAGATTTCCCATGAGACTAGCA 59.865 47.826 0.00 0.00 0.00 3.49
1017 1025 3.389329 TCCAGATTTCCCATGAGACTAGC 59.611 47.826 0.00 0.00 0.00 3.42
1018 1026 5.620738 TTCCAGATTTCCCATGAGACTAG 57.379 43.478 0.00 0.00 0.00 2.57
1019 1027 5.726308 TCTTTCCAGATTTCCCATGAGACTA 59.274 40.000 0.00 0.00 0.00 2.59
1020 1028 4.537688 TCTTTCCAGATTTCCCATGAGACT 59.462 41.667 0.00 0.00 0.00 3.24
1021 1029 4.848357 TCTTTCCAGATTTCCCATGAGAC 58.152 43.478 0.00 0.00 0.00 3.36
1022 1030 5.519183 TTCTTTCCAGATTTCCCATGAGA 57.481 39.130 0.00 0.00 0.00 3.27
1023 1031 5.126707 CCTTTCTTTCCAGATTTCCCATGAG 59.873 44.000 0.00 0.00 0.00 2.90
1024 1032 5.018809 CCTTTCTTTCCAGATTTCCCATGA 58.981 41.667 0.00 0.00 0.00 3.07
1025 1033 5.018809 TCCTTTCTTTCCAGATTTCCCATG 58.981 41.667 0.00 0.00 0.00 3.66
1026 1034 5.275263 TCCTTTCTTTCCAGATTTCCCAT 57.725 39.130 0.00 0.00 0.00 4.00
1027 1035 4.740154 TCCTTTCTTTCCAGATTTCCCA 57.260 40.909 0.00 0.00 0.00 4.37
1028 1036 5.105187 CCATTCCTTTCTTTCCAGATTTCCC 60.105 44.000 0.00 0.00 0.00 3.97
1029 1037 5.481824 ACCATTCCTTTCTTTCCAGATTTCC 59.518 40.000 0.00 0.00 0.00 3.13
1030 1038 6.596309 ACCATTCCTTTCTTTCCAGATTTC 57.404 37.500 0.00 0.00 0.00 2.17
1031 1039 5.183904 CGACCATTCCTTTCTTTCCAGATTT 59.816 40.000 0.00 0.00 0.00 2.17
1032 1040 4.702131 CGACCATTCCTTTCTTTCCAGATT 59.298 41.667 0.00 0.00 0.00 2.40
1033 1041 4.263506 ACGACCATTCCTTTCTTTCCAGAT 60.264 41.667 0.00 0.00 0.00 2.90
1034 1042 3.072476 ACGACCATTCCTTTCTTTCCAGA 59.928 43.478 0.00 0.00 0.00 3.86
1035 1043 3.189287 CACGACCATTCCTTTCTTTCCAG 59.811 47.826 0.00 0.00 0.00 3.86
1036 1044 3.146066 CACGACCATTCCTTTCTTTCCA 58.854 45.455 0.00 0.00 0.00 3.53
1037 1045 3.146847 ACACGACCATTCCTTTCTTTCC 58.853 45.455 0.00 0.00 0.00 3.13
1038 1046 4.065789 AGACACGACCATTCCTTTCTTTC 58.934 43.478 0.00 0.00 0.00 2.62
1039 1047 4.086706 AGACACGACCATTCCTTTCTTT 57.913 40.909 0.00 0.00 0.00 2.52
1040 1048 3.771577 AGACACGACCATTCCTTTCTT 57.228 42.857 0.00 0.00 0.00 2.52
1041 1049 3.771577 AAGACACGACCATTCCTTTCT 57.228 42.857 0.00 0.00 0.00 2.52
1042 1050 4.392138 CCTAAAGACACGACCATTCCTTTC 59.608 45.833 0.00 0.00 0.00 2.62
1043 1051 4.324267 CCTAAAGACACGACCATTCCTTT 58.676 43.478 0.00 0.00 0.00 3.11
1044 1052 3.307480 CCCTAAAGACACGACCATTCCTT 60.307 47.826 0.00 0.00 0.00 3.36
1045 1053 2.236395 CCCTAAAGACACGACCATTCCT 59.764 50.000 0.00 0.00 0.00 3.36
1046 1054 2.629051 CCCTAAAGACACGACCATTCC 58.371 52.381 0.00 0.00 0.00 3.01
1047 1055 2.629051 CCCCTAAAGACACGACCATTC 58.371 52.381 0.00 0.00 0.00 2.67
1048 1056 1.339727 GCCCCTAAAGACACGACCATT 60.340 52.381 0.00 0.00 0.00 3.16
1049 1057 0.252197 GCCCCTAAAGACACGACCAT 59.748 55.000 0.00 0.00 0.00 3.55
1050 1058 1.122632 TGCCCCTAAAGACACGACCA 61.123 55.000 0.00 0.00 0.00 4.02
1051 1059 0.672711 GTGCCCCTAAAGACACGACC 60.673 60.000 0.00 0.00 0.00 4.79
1052 1060 0.672711 GGTGCCCCTAAAGACACGAC 60.673 60.000 0.00 0.00 33.81 4.34
1053 1061 1.675219 GGTGCCCCTAAAGACACGA 59.325 57.895 0.00 0.00 33.81 4.35
1054 1062 1.740296 CGGTGCCCCTAAAGACACG 60.740 63.158 0.00 0.00 33.81 4.49
1055 1063 2.038837 GCGGTGCCCCTAAAGACAC 61.039 63.158 0.00 0.00 0.00 3.67
1056 1064 2.349755 GCGGTGCCCCTAAAGACA 59.650 61.111 0.00 0.00 0.00 3.41
1057 1065 2.818274 CGCGGTGCCCCTAAAGAC 60.818 66.667 0.00 0.00 0.00 3.01
1058 1066 4.090588 CCGCGGTGCCCCTAAAGA 62.091 66.667 19.50 0.00 0.00 2.52
1059 1067 4.404098 ACCGCGGTGCCCCTAAAG 62.404 66.667 33.75 0.00 0.00 1.85
1060 1068 4.708386 CACCGCGGTGCCCCTAAA 62.708 66.667 42.21 0.00 39.39 1.85
1073 1081 2.530958 AATAACCTCCACCGGCACCG 62.531 60.000 0.00 1.02 39.44 4.94
1074 1082 1.029947 CAATAACCTCCACCGGCACC 61.030 60.000 0.00 0.00 0.00 5.01
1075 1083 0.322187 ACAATAACCTCCACCGGCAC 60.322 55.000 0.00 0.00 0.00 5.01
1076 1084 0.402504 AACAATAACCTCCACCGGCA 59.597 50.000 0.00 0.00 0.00 5.69
1077 1085 0.808755 CAACAATAACCTCCACCGGC 59.191 55.000 0.00 0.00 0.00 6.13
1078 1086 0.808755 GCAACAATAACCTCCACCGG 59.191 55.000 0.00 0.00 0.00 5.28
1079 1087 1.821216 AGCAACAATAACCTCCACCG 58.179 50.000 0.00 0.00 0.00 4.94
1080 1088 5.715434 TTTTAGCAACAATAACCTCCACC 57.285 39.130 0.00 0.00 0.00 4.61
1081 1089 9.699703 TTTAATTTTAGCAACAATAACCTCCAC 57.300 29.630 0.00 0.00 0.00 4.02
1082 1090 9.921637 CTTTAATTTTAGCAACAATAACCTCCA 57.078 29.630 0.00 0.00 0.00 3.86
1099 1107 9.965824 CCACAACTTGTACTCATCTTTAATTTT 57.034 29.630 0.00 0.00 0.00 1.82
1100 1108 9.131791 ACCACAACTTGTACTCATCTTTAATTT 57.868 29.630 0.00 0.00 0.00 1.82
1101 1109 8.567948 CACCACAACTTGTACTCATCTTTAATT 58.432 33.333 0.00 0.00 0.00 1.40
1102 1110 7.719633 ACACCACAACTTGTACTCATCTTTAAT 59.280 33.333 0.00 0.00 0.00 1.40
1103 1111 7.051623 ACACCACAACTTGTACTCATCTTTAA 58.948 34.615 0.00 0.00 0.00 1.52
1104 1112 6.588204 ACACCACAACTTGTACTCATCTTTA 58.412 36.000 0.00 0.00 0.00 1.85
1105 1113 5.437060 ACACCACAACTTGTACTCATCTTT 58.563 37.500 0.00 0.00 0.00 2.52
1106 1114 5.036117 ACACCACAACTTGTACTCATCTT 57.964 39.130 0.00 0.00 0.00 2.40
1107 1115 4.689612 ACACCACAACTTGTACTCATCT 57.310 40.909 0.00 0.00 0.00 2.90
1108 1116 5.558273 CGAAACACCACAACTTGTACTCATC 60.558 44.000 0.00 0.00 0.00 2.92
1109 1117 4.272504 CGAAACACCACAACTTGTACTCAT 59.727 41.667 0.00 0.00 0.00 2.90
1110 1118 3.619483 CGAAACACCACAACTTGTACTCA 59.381 43.478 0.00 0.00 0.00 3.41
1111 1119 3.545426 GCGAAACACCACAACTTGTACTC 60.545 47.826 0.00 0.00 0.00 2.59
1112 1120 2.353579 GCGAAACACCACAACTTGTACT 59.646 45.455 0.00 0.00 0.00 2.73
1113 1121 2.711885 GCGAAACACCACAACTTGTAC 58.288 47.619 0.00 0.00 0.00 2.90
1114 1122 1.328069 CGCGAAACACCACAACTTGTA 59.672 47.619 0.00 0.00 0.00 2.41
1115 1123 0.098025 CGCGAAACACCACAACTTGT 59.902 50.000 0.00 0.00 0.00 3.16
1116 1124 0.591236 CCGCGAAACACCACAACTTG 60.591 55.000 8.23 0.00 0.00 3.16
1117 1125 1.720694 CCCGCGAAACACCACAACTT 61.721 55.000 8.23 0.00 0.00 2.66
1118 1126 2.184167 CCCGCGAAACACCACAACT 61.184 57.895 8.23 0.00 0.00 3.16
1119 1127 2.330041 CCCGCGAAACACCACAAC 59.670 61.111 8.23 0.00 0.00 3.32
1120 1128 2.902846 CCCCGCGAAACACCACAA 60.903 61.111 8.23 0.00 0.00 3.33
1121 1129 4.939368 CCCCCGCGAAACACCACA 62.939 66.667 8.23 0.00 0.00 4.17
1124 1132 3.905437 TTAGCCCCCGCGAAACACC 62.905 63.158 8.23 0.00 41.18 4.16
1125 1133 2.358984 TTAGCCCCCGCGAAACAC 60.359 61.111 8.23 0.00 41.18 3.32
1126 1134 2.046700 CTTAGCCCCCGCGAAACA 60.047 61.111 8.23 0.00 41.18 2.83
1127 1135 2.046604 ACTTAGCCCCCGCGAAAC 60.047 61.111 8.23 0.00 41.18 2.78
1128 1136 2.046700 CACTTAGCCCCCGCGAAA 60.047 61.111 8.23 0.00 41.18 3.46
1129 1137 4.770874 GCACTTAGCCCCCGCGAA 62.771 66.667 8.23 0.00 41.18 4.70
1138 1146 6.195165 GCATTACATTACTCAAGCACTTAGC 58.805 40.000 0.00 0.00 46.19 3.09
1139 1147 6.510157 CGGCATTACATTACTCAAGCACTTAG 60.510 42.308 0.00 0.00 0.00 2.18
1140 1148 5.293324 CGGCATTACATTACTCAAGCACTTA 59.707 40.000 0.00 0.00 0.00 2.24
1141 1149 4.094887 CGGCATTACATTACTCAAGCACTT 59.905 41.667 0.00 0.00 0.00 3.16
1142 1150 3.623060 CGGCATTACATTACTCAAGCACT 59.377 43.478 0.00 0.00 0.00 4.40
1143 1151 3.788797 GCGGCATTACATTACTCAAGCAC 60.789 47.826 0.00 0.00 0.00 4.40
1144 1152 2.354510 GCGGCATTACATTACTCAAGCA 59.645 45.455 0.00 0.00 0.00 3.91
1145 1153 2.599848 CGCGGCATTACATTACTCAAGC 60.600 50.000 0.00 0.00 0.00 4.01
1146 1154 2.863740 TCGCGGCATTACATTACTCAAG 59.136 45.455 6.13 0.00 0.00 3.02
1147 1155 2.863740 CTCGCGGCATTACATTACTCAA 59.136 45.455 6.13 0.00 0.00 3.02
1148 1156 2.100087 TCTCGCGGCATTACATTACTCA 59.900 45.455 6.13 0.00 0.00 3.41
1149 1157 2.726760 CTCTCGCGGCATTACATTACTC 59.273 50.000 6.13 0.00 0.00 2.59
1150 1158 2.100916 ACTCTCGCGGCATTACATTACT 59.899 45.455 6.13 0.00 0.00 2.24
1151 1159 2.470821 ACTCTCGCGGCATTACATTAC 58.529 47.619 6.13 0.00 0.00 1.89
1152 1160 2.882927 ACTCTCGCGGCATTACATTA 57.117 45.000 6.13 0.00 0.00 1.90
1153 1161 2.882927 TACTCTCGCGGCATTACATT 57.117 45.000 6.13 0.00 0.00 2.71
1154 1162 2.882927 TTACTCTCGCGGCATTACAT 57.117 45.000 6.13 0.00 0.00 2.29
1155 1163 2.469826 CATTACTCTCGCGGCATTACA 58.530 47.619 6.13 0.00 0.00 2.41
1156 1164 1.192534 GCATTACTCTCGCGGCATTAC 59.807 52.381 6.13 0.00 0.00 1.89
1157 1165 1.497991 GCATTACTCTCGCGGCATTA 58.502 50.000 6.13 0.00 0.00 1.90
1158 1166 1.490693 CGCATTACTCTCGCGGCATT 61.491 55.000 6.13 0.00 45.08 3.56
1159 1167 1.951130 CGCATTACTCTCGCGGCAT 60.951 57.895 6.13 0.00 45.08 4.40
1160 1168 2.582226 CGCATTACTCTCGCGGCA 60.582 61.111 6.13 0.00 45.08 5.69
1164 1172 4.506217 GAATTACAACGCATTACTCTCGC 58.494 43.478 0.00 0.00 0.00 5.03
1165 1173 4.317139 CCGAATTACAACGCATTACTCTCG 60.317 45.833 0.00 0.00 0.00 4.04
1166 1174 4.550255 GCCGAATTACAACGCATTACTCTC 60.550 45.833 0.00 0.00 0.00 3.20
1167 1175 3.308866 GCCGAATTACAACGCATTACTCT 59.691 43.478 0.00 0.00 0.00 3.24
1168 1176 3.545426 GGCCGAATTACAACGCATTACTC 60.545 47.826 0.00 0.00 0.00 2.59
1169 1177 2.353579 GGCCGAATTACAACGCATTACT 59.646 45.455 0.00 0.00 0.00 2.24
1170 1178 2.353579 AGGCCGAATTACAACGCATTAC 59.646 45.455 0.00 0.00 0.00 1.89
1171 1179 2.634600 AGGCCGAATTACAACGCATTA 58.365 42.857 0.00 0.00 0.00 1.90
1172 1180 1.459450 AGGCCGAATTACAACGCATT 58.541 45.000 0.00 0.00 0.00 3.56
1173 1181 1.459450 AAGGCCGAATTACAACGCAT 58.541 45.000 0.00 0.00 0.00 4.73
1174 1182 1.068885 CAAAGGCCGAATTACAACGCA 60.069 47.619 0.00 0.00 0.00 5.24
1175 1183 1.613270 CAAAGGCCGAATTACAACGC 58.387 50.000 0.00 0.00 0.00 4.84
1176 1184 1.731098 GCCAAAGGCCGAATTACAACG 60.731 52.381 0.00 0.00 44.06 4.10
1177 1185 1.990799 GCCAAAGGCCGAATTACAAC 58.009 50.000 0.00 0.00 44.06 3.32
1189 1197 4.152647 AGAAGAAGGTTTAAGGCCAAAGG 58.847 43.478 5.01 0.00 0.00 3.11
1190 1198 5.791336 AAGAAGAAGGTTTAAGGCCAAAG 57.209 39.130 5.01 0.00 0.00 2.77
1191 1199 7.507616 TGAATAAGAAGAAGGTTTAAGGCCAAA 59.492 33.333 5.01 0.00 0.00 3.28
1192 1200 7.007723 TGAATAAGAAGAAGGTTTAAGGCCAA 58.992 34.615 5.01 0.00 0.00 4.52
1193 1201 6.548321 TGAATAAGAAGAAGGTTTAAGGCCA 58.452 36.000 5.01 0.00 0.00 5.36
1194 1202 7.462571 TTGAATAAGAAGAAGGTTTAAGGCC 57.537 36.000 0.00 0.00 0.00 5.19
1195 1203 8.739972 TCATTGAATAAGAAGAAGGTTTAAGGC 58.260 33.333 0.00 0.00 0.00 4.35
1200 1208 9.971922 CACTTTCATTGAATAAGAAGAAGGTTT 57.028 29.630 0.00 0.00 0.00 3.27
1201 1209 8.579863 CCACTTTCATTGAATAAGAAGAAGGTT 58.420 33.333 0.00 0.00 0.00 3.50
1202 1210 7.309438 GCCACTTTCATTGAATAAGAAGAAGGT 60.309 37.037 0.00 0.00 0.00 3.50
1203 1211 7.031975 GCCACTTTCATTGAATAAGAAGAAGG 58.968 38.462 0.00 4.11 0.00 3.46
1204 1212 7.596494 TGCCACTTTCATTGAATAAGAAGAAG 58.404 34.615 0.00 0.00 0.00 2.85
1205 1213 7.523293 TGCCACTTTCATTGAATAAGAAGAA 57.477 32.000 0.00 0.00 0.00 2.52
1206 1214 7.231317 ACTTGCCACTTTCATTGAATAAGAAGA 59.769 33.333 0.00 0.00 0.00 2.87
1207 1215 7.373493 ACTTGCCACTTTCATTGAATAAGAAG 58.627 34.615 0.00 0.00 0.00 2.85
1208 1216 7.231317 AGACTTGCCACTTTCATTGAATAAGAA 59.769 33.333 0.00 0.00 0.00 2.52
1209 1217 6.716628 AGACTTGCCACTTTCATTGAATAAGA 59.283 34.615 0.00 0.00 0.00 2.10
1210 1218 6.917533 AGACTTGCCACTTTCATTGAATAAG 58.082 36.000 0.00 0.00 0.00 1.73
1211 1219 6.899393 AGACTTGCCACTTTCATTGAATAA 57.101 33.333 0.00 0.00 0.00 1.40
1212 1220 6.899393 AAGACTTGCCACTTTCATTGAATA 57.101 33.333 0.00 0.00 0.00 1.75
1213 1221 5.796424 AAGACTTGCCACTTTCATTGAAT 57.204 34.783 0.00 0.00 0.00 2.57
1214 1222 5.596836 AAAGACTTGCCACTTTCATTGAA 57.403 34.783 0.00 0.00 31.89 2.69
1215 1223 5.350633 CAAAAGACTTGCCACTTTCATTGA 58.649 37.500 0.00 0.00 35.66 2.57
1216 1224 4.025480 GCAAAAGACTTGCCACTTTCATTG 60.025 41.667 0.00 0.00 39.38 2.82
1217 1225 4.122046 GCAAAAGACTTGCCACTTTCATT 58.878 39.130 0.00 0.00 39.38 2.57
1218 1226 3.721035 GCAAAAGACTTGCCACTTTCAT 58.279 40.909 0.00 0.00 39.38 2.57
1219 1227 3.163630 GCAAAAGACTTGCCACTTTCA 57.836 42.857 0.00 0.00 39.38 2.69
1227 1235 0.758734 AAAGGGGGCAAAAGACTTGC 59.241 50.000 0.78 0.78 44.22 4.01
1228 1236 2.038659 TGAAAGGGGGCAAAAGACTTG 58.961 47.619 0.00 0.00 0.00 3.16
1229 1237 2.470057 TGAAAGGGGGCAAAAGACTT 57.530 45.000 0.00 0.00 0.00 3.01
1230 1238 2.470057 TTGAAAGGGGGCAAAAGACT 57.530 45.000 0.00 0.00 0.00 3.24
1231 1239 3.552132 TTTTGAAAGGGGGCAAAAGAC 57.448 42.857 0.00 0.00 38.60 3.01
1272 1280 6.544197 TCGTATCCTCTTAGCAGATATGGATC 59.456 42.308 0.00 0.00 34.73 3.36
1329 1337 1.213013 GTCTCGTCGCTGTCATGGT 59.787 57.895 0.00 0.00 0.00 3.55
1451 1459 4.130118 TGGTTCTGAAGAGTTTTCTGCTC 58.870 43.478 0.00 0.00 32.79 4.26
1458 1466 2.620585 GCTTGCTGGTTCTGAAGAGTTT 59.379 45.455 0.00 0.00 0.00 2.66
1461 1469 0.795085 CGCTTGCTGGTTCTGAAGAG 59.205 55.000 0.00 0.00 0.00 2.85
1485 1493 4.513406 TTAACCACAGTCCCTTTCTTGT 57.487 40.909 0.00 0.00 0.00 3.16
1486 1494 7.230712 AGTTAATTAACCACAGTCCCTTTCTTG 59.769 37.037 21.92 0.00 36.88 3.02
1606 1759 9.825972 AATTAATCATCAACTGTGTTCGTAAAG 57.174 29.630 0.00 0.00 0.00 1.85
1654 1807 4.855715 TTGGTCCAAATTAATTCGCACA 57.144 36.364 0.40 0.00 0.00 4.57
1682 1835 6.128172 CCATGTAGAACAGTTAAAGCTGAAGG 60.128 42.308 0.49 0.00 39.62 3.46
1765 1918 7.571983 GCCAGAAAATTATCGACTGGTATGATG 60.572 40.741 15.10 0.00 46.55 3.07
1826 1979 4.452114 GCTTTCCCTTTGCAACCAAATTAG 59.548 41.667 0.00 0.00 39.98 1.73
1827 1980 4.141620 TGCTTTCCCTTTGCAACCAAATTA 60.142 37.500 0.00 0.00 39.98 1.40
1828 1981 3.213506 GCTTTCCCTTTGCAACCAAATT 58.786 40.909 0.00 0.00 39.98 1.82
1829 1982 2.172293 TGCTTTCCCTTTGCAACCAAAT 59.828 40.909 0.00 0.00 39.98 2.32
1830 1983 1.556911 TGCTTTCCCTTTGCAACCAAA 59.443 42.857 0.00 0.00 38.56 3.28
1831 1984 1.198713 TGCTTTCCCTTTGCAACCAA 58.801 45.000 0.00 0.00 33.48 3.67
1832 1985 1.344114 GATGCTTTCCCTTTGCAACCA 59.656 47.619 0.00 0.00 40.24 3.67
1833 1986 1.338105 GGATGCTTTCCCTTTGCAACC 60.338 52.381 0.00 0.00 41.14 3.77
1834 1987 2.084610 GGATGCTTTCCCTTTGCAAC 57.915 50.000 0.00 0.00 40.24 4.17
1843 1996 5.151297 TGAAAATTTCTGGGATGCTTTCC 57.849 39.130 7.29 0.00 44.62 3.13
1844 1997 5.047092 TCCTGAAAATTTCTGGGATGCTTTC 60.047 40.000 24.84 0.00 45.68 2.62
1845 1998 4.840115 TCCTGAAAATTTCTGGGATGCTTT 59.160 37.500 24.84 0.00 45.68 3.51
1846 1999 4.419282 TCCTGAAAATTTCTGGGATGCTT 58.581 39.130 24.84 0.00 45.68 3.91
1847 2000 4.021916 CTCCTGAAAATTTCTGGGATGCT 58.978 43.478 24.84 0.00 45.68 3.79
1848 2001 3.131755 CCTCCTGAAAATTTCTGGGATGC 59.868 47.826 24.84 0.00 45.68 3.91
1849 2002 3.131755 GCCTCCTGAAAATTTCTGGGATG 59.868 47.826 24.84 18.75 45.68 3.51
1850 2003 3.369175 GCCTCCTGAAAATTTCTGGGAT 58.631 45.455 24.84 0.00 45.68 3.85
1851 2004 2.557452 GGCCTCCTGAAAATTTCTGGGA 60.557 50.000 24.84 19.97 45.68 4.37
1852 2005 1.827344 GGCCTCCTGAAAATTTCTGGG 59.173 52.381 24.84 17.53 45.68 4.45
1853 2006 1.827344 GGGCCTCCTGAAAATTTCTGG 59.173 52.381 21.14 21.14 46.64 3.86
1854 2007 1.827344 GGGGCCTCCTGAAAATTTCTG 59.173 52.381 0.84 6.46 0.00 3.02
1855 2008 1.718801 AGGGGCCTCCTGAAAATTTCT 59.281 47.619 11.62 0.00 46.07 2.52
1856 2009 2.238084 AGGGGCCTCCTGAAAATTTC 57.762 50.000 11.62 0.00 46.07 2.17
1869 2022 3.912745 TTTTTCGCGGAGAGGGGCC 62.913 63.158 6.13 0.00 0.00 5.80
1870 2023 2.359478 TTTTTCGCGGAGAGGGGC 60.359 61.111 6.13 0.00 0.00 5.80
1886 2039 2.439245 GGGGGAGGGAGCGTTTTT 59.561 61.111 0.00 0.00 0.00 1.94
1952 2105 3.775654 GTGAGAGGGAGTGGGCCG 61.776 72.222 0.00 0.00 0.00 6.13
1953 2106 3.403558 GGTGAGAGGGAGTGGGCC 61.404 72.222 0.00 0.00 0.00 5.80
1954 2107 3.403558 GGGTGAGAGGGAGTGGGC 61.404 72.222 0.00 0.00 0.00 5.36
1955 2108 2.689034 GGGGTGAGAGGGAGTGGG 60.689 72.222 0.00 0.00 0.00 4.61
1956 2109 2.689034 GGGGGTGAGAGGGAGTGG 60.689 72.222 0.00 0.00 0.00 4.00
1957 2110 1.307343 ATGGGGGTGAGAGGGAGTG 60.307 63.158 0.00 0.00 0.00 3.51
1958 2111 1.003573 GATGGGGGTGAGAGGGAGT 59.996 63.158 0.00 0.00 0.00 3.85
1959 2112 1.768077 GGATGGGGGTGAGAGGGAG 60.768 68.421 0.00 0.00 0.00 4.30
1960 2113 2.372688 GGATGGGGGTGAGAGGGA 59.627 66.667 0.00 0.00 0.00 4.20
1961 2114 3.164269 CGGATGGGGGTGAGAGGG 61.164 72.222 0.00 0.00 0.00 4.30
1962 2115 3.866582 GCGGATGGGGGTGAGAGG 61.867 72.222 0.00 0.00 0.00 3.69
1963 2116 2.317149 GAAGCGGATGGGGGTGAGAG 62.317 65.000 0.00 0.00 0.00 3.20
1964 2117 2.285368 AAGCGGATGGGGGTGAGA 60.285 61.111 0.00 0.00 0.00 3.27
1965 2118 2.190578 GAAGCGGATGGGGGTGAG 59.809 66.667 0.00 0.00 0.00 3.51
1966 2119 3.781307 CGAAGCGGATGGGGGTGA 61.781 66.667 0.00 0.00 0.00 4.02
1993 2146 4.856607 CTTCGCCGGCGTCCTCTC 62.857 72.222 44.16 4.88 40.74 3.20
2017 2170 4.447342 CCACCATCCCTGGGGCAC 62.447 72.222 14.00 0.00 45.45 5.01
2036 2189 4.660938 ACACAAAGGAGCCCCGCC 62.661 66.667 0.00 0.00 37.58 6.13
2037 2190 3.056328 GACACAAAGGAGCCCCGC 61.056 66.667 0.00 0.00 37.58 6.13
2038 2191 2.742372 CGACACAAAGGAGCCCCG 60.742 66.667 0.00 0.00 37.58 5.73
2039 2192 2.359975 CCGACACAAAGGAGCCCC 60.360 66.667 0.00 0.00 0.00 5.80
2040 2193 3.056328 GCCGACACAAAGGAGCCC 61.056 66.667 0.00 0.00 0.00 5.19
2041 2194 3.423154 CGCCGACACAAAGGAGCC 61.423 66.667 0.00 0.00 0.00 4.70
2042 2195 4.090057 GCGCCGACACAAAGGAGC 62.090 66.667 0.00 0.00 45.27 4.70
2043 2196 2.357517 AGCGCCGACACAAAGGAG 60.358 61.111 2.29 0.00 0.00 3.69
2044 2197 2.357034 GAGCGCCGACACAAAGGA 60.357 61.111 2.29 0.00 0.00 3.36
2045 2198 3.777925 CGAGCGCCGACACAAAGG 61.778 66.667 2.29 0.00 41.76 3.11
2046 2199 4.430423 GCGAGCGCCGACACAAAG 62.430 66.667 20.06 0.00 41.76 2.77
2062 2215 4.321966 GGATCCCCGCTAGCTGGC 62.322 72.222 19.11 12.81 0.00 4.85
2063 2216 2.177594 GATGGATCCCCGCTAGCTGG 62.178 65.000 17.73 17.73 34.29 4.85
2064 2217 1.294780 GATGGATCCCCGCTAGCTG 59.705 63.158 13.93 6.10 34.29 4.24
2065 2218 1.915769 GGATGGATCCCCGCTAGCT 60.916 63.158 13.93 0.00 41.20 3.32
2066 2219 2.665603 GGATGGATCCCCGCTAGC 59.334 66.667 9.90 4.06 41.20 3.42
2067 2220 1.606601 TCGGATGGATCCCCGCTAG 60.607 63.158 21.04 4.05 44.24 3.42
2068 2221 1.906824 GTCGGATGGATCCCCGCTA 60.907 63.158 21.04 5.79 44.24 4.26
2069 2222 3.234730 GTCGGATGGATCCCCGCT 61.235 66.667 21.04 0.00 44.24 5.52
2070 2223 4.664677 CGTCGGATGGATCCCCGC 62.665 72.222 21.04 15.60 44.24 6.13
2071 2224 3.991051 CCGTCGGATGGATCCCCG 61.991 72.222 20.11 20.11 44.24 5.73
2072 2225 4.315941 GCCGTCGGATGGATCCCC 62.316 72.222 20.37 2.76 44.24 4.81
2073 2226 4.664677 CGCCGTCGGATGGATCCC 62.665 72.222 20.37 1.12 44.24 3.85
2075 2228 4.286320 AGCGCCGTCGGATGGATC 62.286 66.667 20.37 9.84 35.95 3.36
2076 2229 4.592192 CAGCGCCGTCGGATGGAT 62.592 66.667 20.37 0.00 35.95 3.41
2083 2236 3.918220 GATCTTGCAGCGCCGTCG 61.918 66.667 2.29 0.00 39.07 5.12
2084 2237 3.567797 GGATCTTGCAGCGCCGTC 61.568 66.667 2.29 0.00 0.00 4.79
2088 2241 3.869272 CACCGGATCTTGCAGCGC 61.869 66.667 9.46 0.00 0.00 5.92
2089 2242 2.434884 ACACCGGATCTTGCAGCG 60.435 61.111 9.46 0.00 0.00 5.18
2090 2243 2.401766 CCACACCGGATCTTGCAGC 61.402 63.158 9.46 0.00 36.56 5.25
2091 2244 1.003355 ACCACACCGGATCTTGCAG 60.003 57.895 9.46 0.00 38.63 4.41
2092 2245 1.302431 CACCACACCGGATCTTGCA 60.302 57.895 9.46 0.00 38.63 4.08
2093 2246 2.040544 CCACCACACCGGATCTTGC 61.041 63.158 9.46 0.00 38.63 4.01
2094 2247 2.040544 GCCACCACACCGGATCTTG 61.041 63.158 9.46 0.00 38.63 3.02
2095 2248 2.351276 GCCACCACACCGGATCTT 59.649 61.111 9.46 0.00 38.63 2.40
2096 2249 3.717294 GGCCACCACACCGGATCT 61.717 66.667 9.46 0.00 38.63 2.75
2097 2250 4.796495 GGGCCACCACACCGGATC 62.796 72.222 9.46 0.00 38.63 3.36
2101 2254 3.901797 GAAGAGGGCCACCACACCG 62.902 68.421 6.18 0.00 40.13 4.94
2102 2255 2.034221 GAAGAGGGCCACCACACC 59.966 66.667 6.18 0.00 40.13 4.16
2103 2256 2.358737 CGAAGAGGGCCACCACAC 60.359 66.667 6.18 0.00 40.13 3.82
2104 2257 4.329545 GCGAAGAGGGCCACCACA 62.330 66.667 6.18 0.00 40.13 4.17
2134 2287 4.554036 GAGCAGCCCCGGATCCAC 62.554 72.222 13.41 0.00 0.00 4.02
2136 2289 4.247380 CTGAGCAGCCCCGGATCC 62.247 72.222 0.73 0.00 0.00 3.36
2137 2290 4.247380 CCTGAGCAGCCCCGGATC 62.247 72.222 0.73 0.00 0.00 3.36
2145 2298 4.925861 GGATCCGGCCTGAGCAGC 62.926 72.222 14.65 0.00 42.56 5.25
2146 2299 4.598894 CGGATCCGGCCTGAGCAG 62.599 72.222 26.95 6.46 42.56 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.