Multiple sequence alignment - TraesCS7B01G168600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G168600 chr7B 100.000 5234 0 0 1 5234 236781298 236786531 0.000000e+00 9666
1 TraesCS7B01G168600 chr7B 100.000 108 0 0 5095 5202 236786123 236786230 3.200000e-47 200
2 TraesCS7B01G168600 chr7B 100.000 108 0 0 4826 4933 236786392 236786499 3.200000e-47 200
3 TraesCS7B01G168600 chr7D 92.485 4418 235 53 606 4972 257513807 257518178 0.000000e+00 6229
4 TraesCS7B01G168600 chr7D 82.986 288 30 10 4696 4972 570232991 570232712 5.240000e-60 243
5 TraesCS7B01G168600 chr7A 91.710 4403 222 46 606 4943 277733646 277729322 0.000000e+00 5976
6 TraesCS7B01G168600 chr7A 90.265 113 9 2 4279 4391 13233010 13232900 4.220000e-31 147
7 TraesCS7B01G168600 chr7A 88.571 105 9 3 4279 4382 13234472 13234370 1.980000e-24 124
8 TraesCS7B01G168600 chr7A 85.455 110 14 2 4280 4388 61571452 61571344 4.280000e-21 113
9 TraesCS7B01G168600 chr6D 87.602 613 68 6 4 611 77714621 77714012 0.000000e+00 704
10 TraesCS7B01G168600 chr2B 87.644 607 70 3 10 611 362030618 362030012 0.000000e+00 701
11 TraesCS7B01G168600 chr2B 81.656 616 106 5 5 614 326283920 326283306 6.050000e-139 505
12 TraesCS7B01G168600 chr5D 86.985 607 74 4 5 606 296633111 296633717 0.000000e+00 678
13 TraesCS7B01G168600 chr5D 86.297 613 77 6 5 611 54217727 54218338 0.000000e+00 660
14 TraesCS7B01G168600 chr1D 85.714 616 83 4 1 611 246017839 246018454 0.000000e+00 645
15 TraesCS7B01G168600 chr1A 83.333 612 97 4 5 611 555367251 555366640 1.270000e-155 560
16 TraesCS7B01G168600 chr6A 83.871 527 80 4 90 611 117469206 117468680 1.010000e-136 497
17 TraesCS7B01G168600 chr6A 83.471 121 14 4 4273 4390 603650227 603650110 1.990000e-19 108
18 TraesCS7B01G168600 chr6B 79.545 616 119 5 5 614 23510797 23510183 2.900000e-117 433
19 TraesCS7B01G168600 chr3D 90.909 110 7 3 4281 4390 574518306 574518200 1.520000e-30 145
20 TraesCS7B01G168600 chr3D 86.607 112 13 2 4279 4390 100547712 100547603 7.120000e-24 122
21 TraesCS7B01G168600 chr1B 83.898 118 13 5 4276 4390 573217772 573217886 1.990000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G168600 chr7B 236781298 236786531 5233 False 3355.333333 9666 100.000 1 5234 3 chr7B.!!$F1 5233
1 TraesCS7B01G168600 chr7D 257513807 257518178 4371 False 6229.000000 6229 92.485 606 4972 1 chr7D.!!$F1 4366
2 TraesCS7B01G168600 chr7A 277729322 277733646 4324 True 5976.000000 5976 91.710 606 4943 1 chr7A.!!$R2 4337
3 TraesCS7B01G168600 chr6D 77714012 77714621 609 True 704.000000 704 87.602 4 611 1 chr6D.!!$R1 607
4 TraesCS7B01G168600 chr2B 362030012 362030618 606 True 701.000000 701 87.644 10 611 1 chr2B.!!$R2 601
5 TraesCS7B01G168600 chr2B 326283306 326283920 614 True 505.000000 505 81.656 5 614 1 chr2B.!!$R1 609
6 TraesCS7B01G168600 chr5D 296633111 296633717 606 False 678.000000 678 86.985 5 606 1 chr5D.!!$F2 601
7 TraesCS7B01G168600 chr5D 54217727 54218338 611 False 660.000000 660 86.297 5 611 1 chr5D.!!$F1 606
8 TraesCS7B01G168600 chr1D 246017839 246018454 615 False 645.000000 645 85.714 1 611 1 chr1D.!!$F1 610
9 TraesCS7B01G168600 chr1A 555366640 555367251 611 True 560.000000 560 83.333 5 611 1 chr1A.!!$R1 606
10 TraesCS7B01G168600 chr6A 117468680 117469206 526 True 497.000000 497 83.871 90 611 1 chr6A.!!$R1 521
11 TraesCS7B01G168600 chr6B 23510183 23510797 614 True 433.000000 433 79.545 5 614 1 chr6B.!!$R1 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 206 0.107017 CCCATGCTCGGATTGAAGGT 60.107 55.0 0.00 0.00 0.00 3.50 F
916 941 0.179084 CGGCCCAGACGAACATATGT 60.179 55.0 1.41 1.41 35.20 2.29 F
1962 2000 0.039472 TGTGTGTGGATCAATGGGGG 59.961 55.0 0.00 0.00 0.00 5.40 F
1984 2022 0.467844 AATGACTGGTGTTGCCTGCA 60.468 50.0 0.00 0.00 39.53 4.41 F
2226 2269 0.907486 CTGGAGGACAAGAGATGGCA 59.093 55.0 0.00 0.00 39.66 4.92 F
4141 4189 1.082117 CGGCGTGACCCAGACAATAC 61.082 60.0 0.00 0.00 33.26 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1438 1473 0.913876 GCAAGCACAAACAACGACAC 59.086 50.000 0.00 0.0 0.00 3.67 R
2460 2503 1.112315 TCCACCACCAACCATTGCAC 61.112 55.000 0.00 0.0 0.00 4.57 R
3369 3413 2.289002 GCACAATCTACCTATGCTGCAC 59.711 50.000 3.57 0.0 33.44 4.57 R
3965 4012 2.267642 CCACCGGCGGAGAATTCA 59.732 61.111 35.78 0.0 0.00 2.57 R
4221 4269 2.159170 GGACAGATGGGAAGACGAAGAG 60.159 54.545 0.00 0.0 0.00 2.85 R
5204 5320 0.028902 GATTTATCGTTGCGGGTGGC 59.971 55.000 0.00 0.0 43.96 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 105 0.745845 AAATCTGCTCGAAGGCGCAT 60.746 50.000 10.83 0.00 34.37 4.73
148 150 6.127619 CCCAACAGGTTAAGGAAGAAATCATC 60.128 42.308 0.00 0.00 0.00 2.92
180 183 3.126171 CGTTATTTCCGATTGCTGACCAA 59.874 43.478 0.00 0.00 37.94 3.67
187 190 0.539438 GATTGCTGACCAACACCCCA 60.539 55.000 0.00 0.00 35.99 4.96
203 206 0.107017 CCCATGCTCGGATTGAAGGT 60.107 55.000 0.00 0.00 0.00 3.50
287 293 4.091549 TCCCTTAGTAATCCACTTGACGT 58.908 43.478 0.00 0.00 38.80 4.34
292 298 0.892755 TAATCCACTTGACGTCGCCT 59.107 50.000 11.62 0.00 0.00 5.52
324 331 6.308566 GCTAGTATTCCTCCTCTTCCTAAGA 58.691 44.000 0.00 0.00 35.87 2.10
328 335 7.366226 AGTATTCCTCCTCTTCCTAAGAATGA 58.634 38.462 0.00 0.00 37.02 2.57
394 401 1.270839 CCGAGAAGGCTTTGGAGTCAA 60.271 52.381 0.00 0.00 0.00 3.18
611 623 4.400961 GCCCACCTCGAAGCAGCT 62.401 66.667 0.00 0.00 0.00 4.24
648 661 3.791245 TGTATGCACGAATACATGCTGA 58.209 40.909 0.00 0.00 42.55 4.26
704 717 4.231718 GAGACTTTATTCGATCTCGCCT 57.768 45.455 0.00 0.00 39.60 5.52
783 807 4.094442 GGCAAACCATTGTGCTACTACTAC 59.906 45.833 0.00 0.00 40.70 2.73
784 808 4.935808 GCAAACCATTGTGCTACTACTACT 59.064 41.667 0.00 0.00 38.85 2.57
785 809 6.103997 GCAAACCATTGTGCTACTACTACTA 58.896 40.000 0.00 0.00 38.85 1.82
869 894 4.137872 GGATCACGGCCCGAACGA 62.138 66.667 11.71 3.25 34.93 3.85
894 919 2.556287 GTTCGGTCGCCAAGCTTG 59.444 61.111 19.93 19.93 0.00 4.01
916 941 0.179084 CGGCCCAGACGAACATATGT 60.179 55.000 1.41 1.41 35.20 2.29
985 1010 9.184523 CTCTCTTTATCTTTCTCTCTCCTACAA 57.815 37.037 0.00 0.00 0.00 2.41
1101 1127 2.649034 CGTGTGACCTGCCTACGT 59.351 61.111 0.00 0.00 0.00 3.57
1260 1286 2.908428 CAGCAGCACCAGCACCAA 60.908 61.111 0.00 0.00 45.49 3.67
1372 1407 4.373116 GTGAGTTCGCGGCCCTCA 62.373 66.667 15.86 15.86 33.03 3.86
1426 1461 5.447818 CCTTTTGTTCTCGCTATGATGGTTC 60.448 44.000 0.00 0.00 0.00 3.62
1438 1473 5.803967 GCTATGATGGTTCTTTTGCTCTTTG 59.196 40.000 0.00 0.00 0.00 2.77
1568 1604 1.361793 TTGTAAACATCGTAGCGGGC 58.638 50.000 0.00 0.00 0.00 6.13
1632 1668 3.764218 AGATCGATACCCGTACCAGAAT 58.236 45.455 0.00 0.00 39.75 2.40
1634 1670 4.587684 AGATCGATACCCGTACCAGAATTT 59.412 41.667 0.00 0.00 39.75 1.82
1641 1677 7.255242 CGATACCCGTACCAGAATTTCTACTTA 60.255 40.741 0.00 0.00 0.00 2.24
1687 1724 5.863935 GGTTGATTTTCTACCACAAATCTGC 59.136 40.000 3.69 0.00 41.06 4.26
1710 1747 5.447818 GCCCAGAGTATTTTCAAGAACGATG 60.448 44.000 0.00 0.00 0.00 3.84
1712 1749 5.352569 CCAGAGTATTTTCAAGAACGATGCT 59.647 40.000 0.00 0.00 0.00 3.79
1724 1761 3.382865 AGAACGATGCTGAGAGATGCTTA 59.617 43.478 0.00 0.00 0.00 3.09
1751 1788 6.526566 ACTTGAAAAACTCGAGTGATACAC 57.473 37.500 20.85 9.47 45.68 2.90
1765 1802 3.000078 GTGATACACGTGGTAAATCTGCG 60.000 47.826 21.57 0.00 35.14 5.18
1814 1852 1.002134 CATCACTTTGCCTCCCCGT 60.002 57.895 0.00 0.00 0.00 5.28
1827 1865 0.620556 TCCCCGTCTCCGTTACTAGT 59.379 55.000 0.00 0.00 0.00 2.57
1960 1998 1.908344 TGTGTGTGTGGATCAATGGG 58.092 50.000 0.00 0.00 0.00 4.00
1962 2000 0.039472 TGTGTGTGGATCAATGGGGG 59.961 55.000 0.00 0.00 0.00 5.40
1984 2022 0.467844 AATGACTGGTGTTGCCTGCA 60.468 50.000 0.00 0.00 39.53 4.41
2035 2073 7.076842 ACAGTTAAATGCTTGTATGTAGCTG 57.923 36.000 2.17 9.78 39.38 4.24
2061 2101 6.147581 TCTAACTTCTAACTGTTAGTGTGCG 58.852 40.000 22.95 16.65 43.41 5.34
2081 2121 4.873827 TGCGTCCATATTTTCTCCTTGTAC 59.126 41.667 0.00 0.00 0.00 2.90
2181 2221 6.088824 GCAAGTGAGATTTACATGAAACCTG 58.911 40.000 0.00 0.00 0.00 4.00
2182 2222 6.294176 GCAAGTGAGATTTACATGAAACCTGT 60.294 38.462 0.00 0.00 0.00 4.00
2226 2269 0.907486 CTGGAGGACAAGAGATGGCA 59.093 55.000 0.00 0.00 39.66 4.92
2295 2338 6.097839 ACAATGAAGCAATTGGAGCATCTTAT 59.902 34.615 7.72 0.00 41.06 1.73
2341 2384 8.225777 GGGTATTGTTAACTTCGTTGTAAAGAG 58.774 37.037 7.22 0.00 0.00 2.85
2370 2413 6.258727 ACATAATTATTCTGAGCACCTTGTCG 59.741 38.462 0.00 0.00 0.00 4.35
2380 2423 3.067106 AGCACCTTGTCGTGATACTTTG 58.933 45.455 0.00 0.00 35.68 2.77
2389 2432 3.252458 GTCGTGATACTTTGGCCTTGTTT 59.748 43.478 3.32 0.00 0.00 2.83
2503 2546 6.699242 ATGAGTGGATATCCTGTTGATGAT 57.301 37.500 22.35 1.89 34.76 2.45
2743 2786 5.178061 TGTCACACCACTGATATTCATCAC 58.822 41.667 0.00 0.00 36.22 3.06
2761 2804 6.484288 TCATCACATAGTTCCATTCCTGTTT 58.516 36.000 0.00 0.00 0.00 2.83
2770 2813 7.781324 AGTTCCATTCCTGTTTGTTAATGAT 57.219 32.000 0.00 0.00 32.29 2.45
2790 2833 4.530553 TGATACTCTTGTTCTTGTGGCCTA 59.469 41.667 3.32 0.00 0.00 3.93
3330 3374 6.523840 TCAAGCTTGCTTTGAAATTGGTAAT 58.476 32.000 21.99 0.00 31.98 1.89
3360 3404 9.736023 GATCAATTGTCTGTTGTACTTTCTTTT 57.264 29.630 5.13 0.00 0.00 2.27
3369 3413 9.462174 TCTGTTGTACTTTCTTTTTGCAATATG 57.538 29.630 0.00 0.00 0.00 1.78
3447 3491 6.531594 GCATTAATAGCCAAAAACTCACCTTC 59.468 38.462 0.00 0.00 0.00 3.46
3504 3548 4.891756 AGACCATGATTTTTCTAGGGCATG 59.108 41.667 0.00 0.00 34.47 4.06
3515 3559 6.633500 TTTCTAGGGCATGTTATTGTATGC 57.367 37.500 0.00 0.00 46.76 3.14
3634 3678 3.466836 GTCGATGTATCCTTGCCAATCA 58.533 45.455 0.00 0.00 0.00 2.57
3693 3740 2.093500 TGCGTTGGATCTAATGCTCACT 60.093 45.455 29.15 0.00 41.86 3.41
3928 3975 3.200483 GTTGGCGAACCTACCGATTATT 58.800 45.455 0.00 0.00 35.86 1.40
4002 4049 3.238241 CGTAGCGTTCGTCAGCCG 61.238 66.667 0.00 0.00 38.13 5.52
4141 4189 1.082117 CGGCGTGACCCAGACAATAC 61.082 60.000 0.00 0.00 33.26 1.89
4143 4191 1.082117 GCGTGACCCAGACAATACCG 61.082 60.000 0.00 0.00 0.00 4.02
4200 4248 3.779759 CACTTGCTTGTTTGTTTAGCCA 58.220 40.909 0.00 0.00 34.03 4.75
4221 4269 7.158021 AGCCATGCTAGTAATATCAACTCTTC 58.842 38.462 0.00 0.00 36.99 2.87
4232 4280 9.228636 GTAATATCAACTCTTCTCTTCGTCTTC 57.771 37.037 0.00 0.00 0.00 2.87
4304 4354 8.437575 TCCCTCTGTTTCTAAATACAAGTCTTT 58.562 33.333 0.00 0.00 0.00 2.52
4305 4355 9.067986 CCCTCTGTTTCTAAATACAAGTCTTTT 57.932 33.333 0.00 0.00 0.00 2.27
4334 4384 9.823647 AGAGATTTCAGTACAAACTACATATGG 57.176 33.333 7.80 0.00 33.48 2.74
4335 4385 9.817809 GAGATTTCAGTACAAACTACATATGGA 57.182 33.333 7.80 0.00 33.48 3.41
4396 4446 3.054802 CCACTCATTTTGCTCCTAGTCCT 60.055 47.826 0.00 0.00 0.00 3.85
4397 4447 4.187694 CACTCATTTTGCTCCTAGTCCTC 58.812 47.826 0.00 0.00 0.00 3.71
4403 4453 6.384015 TCATTTTGCTCCTAGTCCTCTATTGA 59.616 38.462 0.00 0.00 0.00 2.57
4405 4455 6.814954 TTTGCTCCTAGTCCTCTATTGAAT 57.185 37.500 0.00 0.00 0.00 2.57
4406 4456 6.412362 TTGCTCCTAGTCCTCTATTGAATC 57.588 41.667 0.00 0.00 0.00 2.52
4432 4497 1.771255 AGGAATGGAGGGAGTACATGC 59.229 52.381 0.00 0.00 0.00 4.06
4440 4505 0.676782 GGGAGTACATGCGGTTGCTT 60.677 55.000 0.00 0.00 43.34 3.91
4456 4521 3.769739 TGCTTTGTGGTAGTGATCACT 57.230 42.857 30.11 30.11 45.02 3.41
4501 4566 3.051727 AGTGTAGAATTAGGGGGCTCTCT 60.052 47.826 0.00 0.00 0.00 3.10
4503 4568 3.711704 TGTAGAATTAGGGGGCTCTCTTG 59.288 47.826 0.00 0.00 0.00 3.02
4530 4595 1.677966 CAGAGTTGCATGCCTGGCT 60.678 57.895 21.03 7.66 0.00 4.75
4546 4611 3.245284 CCTGGCTATCGTGTTAAATGTCG 59.755 47.826 0.00 0.00 0.00 4.35
4557 4622 5.618561 GTGTTAAATGTCGAAGTGGTCATC 58.381 41.667 0.00 0.00 0.00 2.92
4570 4635 6.402550 CGAAGTGGTCATCAACTCTAAATTGG 60.403 42.308 0.00 0.00 0.00 3.16
4591 4656 4.646040 TGGAGGATTGTCAAGCATATTTGG 59.354 41.667 2.81 0.00 0.00 3.28
4632 4697 8.758829 TCTCCTAAGTATTTGCATAGAAGTTGA 58.241 33.333 0.00 0.00 0.00 3.18
4637 4702 6.789262 AGTATTTGCATAGAAGTTGACATGC 58.211 36.000 0.00 0.00 43.22 4.06
4650 4715 2.910199 TGACATGCATCCAAGTCTAGC 58.090 47.619 14.02 0.00 39.68 3.42
4654 4719 1.279496 TGCATCCAAGTCTAGCCACT 58.721 50.000 0.00 0.00 0.00 4.00
4655 4720 1.630369 TGCATCCAAGTCTAGCCACTT 59.370 47.619 0.00 0.00 37.05 3.16
4667 4732 8.784043 CAAGTCTAGCCACTTAAGTTTAATGTT 58.216 33.333 5.07 0.00 34.70 2.71
4736 4817 6.500684 TCAGGAAGTTATGACTTGAATTGC 57.499 37.500 7.73 0.00 45.88 3.56
4751 4832 3.069443 TGAATTGCTTCAGGGTTGGTTTC 59.931 43.478 0.00 0.00 36.46 2.78
4788 4891 2.111972 TCTACTGATATGTCCCTCCCCC 59.888 54.545 0.00 0.00 0.00 5.40
4800 4903 1.930204 CCCTCCCCCTTCTGGTTAATT 59.070 52.381 0.00 0.00 0.00 1.40
4854 4959 9.612066 ATTTTGTTGTGTTTATTCACATTTCCT 57.388 25.926 0.47 0.00 45.73 3.36
4867 4981 8.833231 ATTCACATTTCCTAATATACGAGTGG 57.167 34.615 0.00 0.00 0.00 4.00
4871 4985 6.553852 ACATTTCCTAATATACGAGTGGTCCT 59.446 38.462 0.00 0.00 0.00 3.85
4872 4986 6.401047 TTTCCTAATATACGAGTGGTCCTG 57.599 41.667 0.00 0.00 0.00 3.86
4873 4987 5.314718 TCCTAATATACGAGTGGTCCTGA 57.685 43.478 0.00 0.00 0.00 3.86
4874 4988 5.068636 TCCTAATATACGAGTGGTCCTGAC 58.931 45.833 0.00 0.00 0.00 3.51
4875 4989 3.984508 AATATACGAGTGGTCCTGACG 57.015 47.619 0.00 0.00 0.00 4.35
4876 4990 2.408271 TATACGAGTGGTCCTGACGT 57.592 50.000 11.11 11.11 40.23 4.34
4880 4994 0.109689 CGAGTGGTCCTGACGTTCTC 60.110 60.000 0.00 0.00 0.00 2.87
4881 4995 1.249407 GAGTGGTCCTGACGTTCTCT 58.751 55.000 0.00 0.00 0.00 3.10
4882 4996 1.200484 GAGTGGTCCTGACGTTCTCTC 59.800 57.143 0.00 0.00 0.00 3.20
4883 4997 0.244178 GTGGTCCTGACGTTCTCTCC 59.756 60.000 0.00 0.00 0.00 3.71
4884 4998 0.898789 TGGTCCTGACGTTCTCTCCC 60.899 60.000 0.00 0.00 0.00 4.30
4887 5001 0.538977 TCCTGACGTTCTCTCCCGTT 60.539 55.000 0.00 0.00 37.44 4.44
4888 5002 0.317479 CCTGACGTTCTCTCCCGTTT 59.683 55.000 0.00 0.00 37.44 3.60
4889 5003 1.419374 CTGACGTTCTCTCCCGTTTG 58.581 55.000 0.00 0.00 37.44 2.93
4890 5004 0.748450 TGACGTTCTCTCCCGTTTGT 59.252 50.000 0.00 0.00 37.44 2.83
4891 5005 1.137513 GACGTTCTCTCCCGTTTGTG 58.862 55.000 0.00 0.00 37.44 3.33
4892 5006 0.462789 ACGTTCTCTCCCGTTTGTGT 59.537 50.000 0.00 0.00 32.50 3.72
4893 5007 1.134610 ACGTTCTCTCCCGTTTGTGTT 60.135 47.619 0.00 0.00 32.50 3.32
4984 5100 5.769967 TTGTTTGTTGTAACATTGTGTGC 57.230 34.783 0.00 0.00 38.95 4.57
4985 5101 4.177026 TGTTTGTTGTAACATTGTGTGCC 58.823 39.130 0.00 0.00 38.95 5.01
4986 5102 4.177026 GTTTGTTGTAACATTGTGTGCCA 58.823 39.130 0.00 0.00 38.95 4.92
4987 5103 4.456280 TTGTTGTAACATTGTGTGCCAA 57.544 36.364 0.00 0.00 38.95 4.52
4988 5104 4.662468 TGTTGTAACATTGTGTGCCAAT 57.338 36.364 0.00 0.00 44.73 3.16
5000 5116 6.832520 TTGTGTGCCAATGATAGTTGTATT 57.167 33.333 0.00 0.00 0.00 1.89
5001 5117 6.832520 TGTGTGCCAATGATAGTTGTATTT 57.167 33.333 0.00 0.00 0.00 1.40
5002 5118 7.225784 TGTGTGCCAATGATAGTTGTATTTT 57.774 32.000 0.00 0.00 0.00 1.82
5003 5119 7.089538 TGTGTGCCAATGATAGTTGTATTTTG 58.910 34.615 0.00 0.00 0.00 2.44
5004 5120 6.531240 GTGTGCCAATGATAGTTGTATTTTGG 59.469 38.462 0.00 0.00 36.34 3.28
5005 5121 6.210385 TGTGCCAATGATAGTTGTATTTTGGT 59.790 34.615 0.00 0.00 36.01 3.67
5006 5122 6.531240 GTGCCAATGATAGTTGTATTTTGGTG 59.469 38.462 0.00 0.00 36.01 4.17
5007 5123 6.210385 TGCCAATGATAGTTGTATTTTGGTGT 59.790 34.615 0.00 0.00 36.01 4.16
5008 5124 7.096551 GCCAATGATAGTTGTATTTTGGTGTT 58.903 34.615 0.00 0.00 36.01 3.32
5009 5125 8.247562 GCCAATGATAGTTGTATTTTGGTGTTA 58.752 33.333 0.00 0.00 36.01 2.41
5018 5134 8.608317 AGTTGTATTTTGGTGTTATTTGTTTGC 58.392 29.630 0.00 0.00 0.00 3.68
5019 5135 8.608317 GTTGTATTTTGGTGTTATTTGTTTGCT 58.392 29.630 0.00 0.00 0.00 3.91
5020 5136 8.723942 TGTATTTTGGTGTTATTTGTTTGCTT 57.276 26.923 0.00 0.00 0.00 3.91
5021 5137 8.607459 TGTATTTTGGTGTTATTTGTTTGCTTG 58.393 29.630 0.00 0.00 0.00 4.01
5022 5138 5.476752 TTTGGTGTTATTTGTTTGCTTGC 57.523 34.783 0.00 0.00 0.00 4.01
5023 5139 3.462021 TGGTGTTATTTGTTTGCTTGCC 58.538 40.909 0.00 0.00 0.00 4.52
5024 5140 3.133721 TGGTGTTATTTGTTTGCTTGCCT 59.866 39.130 0.00 0.00 0.00 4.75
5025 5141 3.494251 GGTGTTATTTGTTTGCTTGCCTG 59.506 43.478 0.00 0.00 0.00 4.85
5026 5142 3.494251 GTGTTATTTGTTTGCTTGCCTGG 59.506 43.478 0.00 0.00 0.00 4.45
5027 5143 3.066380 GTTATTTGTTTGCTTGCCTGGG 58.934 45.455 0.00 0.00 0.00 4.45
5028 5144 1.422531 ATTTGTTTGCTTGCCTGGGA 58.577 45.000 0.00 0.00 0.00 4.37
5029 5145 1.422531 TTTGTTTGCTTGCCTGGGAT 58.577 45.000 0.00 0.00 0.00 3.85
5030 5146 2.300956 TTGTTTGCTTGCCTGGGATA 57.699 45.000 0.00 0.00 0.00 2.59
5031 5147 2.530460 TGTTTGCTTGCCTGGGATAT 57.470 45.000 0.00 0.00 0.00 1.63
5032 5148 2.818921 TGTTTGCTTGCCTGGGATATT 58.181 42.857 0.00 0.00 0.00 1.28
5033 5149 3.172339 TGTTTGCTTGCCTGGGATATTT 58.828 40.909 0.00 0.00 0.00 1.40
5034 5150 3.055963 TGTTTGCTTGCCTGGGATATTTG 60.056 43.478 0.00 0.00 0.00 2.32
5035 5151 1.113788 TGCTTGCCTGGGATATTTGC 58.886 50.000 0.00 0.00 0.00 3.68
5036 5152 1.113788 GCTTGCCTGGGATATTTGCA 58.886 50.000 0.00 0.00 0.00 4.08
5037 5153 1.202452 GCTTGCCTGGGATATTTGCAC 60.202 52.381 0.00 0.00 0.00 4.57
5038 5154 1.410153 CTTGCCTGGGATATTTGCACC 59.590 52.381 0.00 0.00 0.00 5.01
5039 5155 0.751277 TGCCTGGGATATTTGCACCG 60.751 55.000 0.00 0.00 0.00 4.94
5040 5156 0.751643 GCCTGGGATATTTGCACCGT 60.752 55.000 0.00 0.00 0.00 4.83
5041 5157 1.024271 CCTGGGATATTTGCACCGTG 58.976 55.000 0.00 0.00 0.00 4.94
5042 5158 0.381801 CTGGGATATTTGCACCGTGC 59.618 55.000 16.93 16.93 45.29 5.34
5043 5159 0.034574 TGGGATATTTGCACCGTGCT 60.035 50.000 23.52 7.01 45.31 4.40
5044 5160 0.381801 GGGATATTTGCACCGTGCTG 59.618 55.000 23.52 0.00 45.31 4.41
5045 5161 1.094785 GGATATTTGCACCGTGCTGT 58.905 50.000 23.52 12.01 45.31 4.40
5046 5162 1.202177 GGATATTTGCACCGTGCTGTG 60.202 52.381 23.52 0.00 45.31 3.66
5052 5168 3.325072 CACCGTGCTGTGCGTTAA 58.675 55.556 0.00 0.00 0.00 2.01
5053 5169 1.866237 CACCGTGCTGTGCGTTAAT 59.134 52.632 0.00 0.00 0.00 1.40
5054 5170 0.237235 CACCGTGCTGTGCGTTAATT 59.763 50.000 0.00 0.00 0.00 1.40
5055 5171 0.948678 ACCGTGCTGTGCGTTAATTT 59.051 45.000 0.00 0.00 0.00 1.82
5056 5172 1.326576 CCGTGCTGTGCGTTAATTTG 58.673 50.000 0.00 0.00 0.00 2.32
5057 5173 1.334599 CCGTGCTGTGCGTTAATTTGT 60.335 47.619 0.00 0.00 0.00 2.83
5058 5174 2.380660 CGTGCTGTGCGTTAATTTGTT 58.619 42.857 0.00 0.00 0.00 2.83
5059 5175 2.786578 CGTGCTGTGCGTTAATTTGTTT 59.213 40.909 0.00 0.00 0.00 2.83
5060 5176 3.360574 CGTGCTGTGCGTTAATTTGTTTG 60.361 43.478 0.00 0.00 0.00 2.93
5061 5177 3.794028 GTGCTGTGCGTTAATTTGTTTGA 59.206 39.130 0.00 0.00 0.00 2.69
5062 5178 4.266502 GTGCTGTGCGTTAATTTGTTTGAA 59.733 37.500 0.00 0.00 0.00 2.69
5063 5179 5.046529 TGCTGTGCGTTAATTTGTTTGAAT 58.953 33.333 0.00 0.00 0.00 2.57
5064 5180 5.051173 TGCTGTGCGTTAATTTGTTTGAATG 60.051 36.000 0.00 0.00 0.00 2.67
5065 5181 5.051106 GCTGTGCGTTAATTTGTTTGAATGT 60.051 36.000 0.00 0.00 0.00 2.71
5066 5182 6.143118 GCTGTGCGTTAATTTGTTTGAATGTA 59.857 34.615 0.00 0.00 0.00 2.29
5067 5183 7.306283 GCTGTGCGTTAATTTGTTTGAATGTAA 60.306 33.333 0.00 0.00 0.00 2.41
5068 5184 8.581057 TGTGCGTTAATTTGTTTGAATGTAAT 57.419 26.923 0.00 0.00 0.00 1.89
5069 5185 8.483218 TGTGCGTTAATTTGTTTGAATGTAATG 58.517 29.630 0.00 0.00 0.00 1.90
5070 5186 8.484008 GTGCGTTAATTTGTTTGAATGTAATGT 58.516 29.630 0.00 0.00 0.00 2.71
5071 5187 8.695284 TGCGTTAATTTGTTTGAATGTAATGTC 58.305 29.630 0.00 0.00 0.00 3.06
5072 5188 8.911662 GCGTTAATTTGTTTGAATGTAATGTCT 58.088 29.630 0.00 0.00 0.00 3.41
5078 5194 7.872163 TTGTTTGAATGTAATGTCTGAATGC 57.128 32.000 0.00 0.00 0.00 3.56
5079 5195 6.389091 TGTTTGAATGTAATGTCTGAATGCC 58.611 36.000 0.00 0.00 0.00 4.40
5080 5196 5.581126 TTGAATGTAATGTCTGAATGCCC 57.419 39.130 0.00 0.00 0.00 5.36
5081 5197 4.598022 TGAATGTAATGTCTGAATGCCCA 58.402 39.130 0.00 0.00 0.00 5.36
5082 5198 4.398988 TGAATGTAATGTCTGAATGCCCAC 59.601 41.667 0.00 0.00 0.00 4.61
5083 5199 2.722094 TGTAATGTCTGAATGCCCACC 58.278 47.619 0.00 0.00 0.00 4.61
5084 5200 1.670811 GTAATGTCTGAATGCCCACCG 59.329 52.381 0.00 0.00 0.00 4.94
5085 5201 0.038166 AATGTCTGAATGCCCACCGT 59.962 50.000 0.00 0.00 0.00 4.83
5086 5202 0.677731 ATGTCTGAATGCCCACCGTG 60.678 55.000 0.00 0.00 0.00 4.94
5087 5203 2.359850 TCTGAATGCCCACCGTGC 60.360 61.111 0.00 0.00 0.00 5.34
5088 5204 2.360350 CTGAATGCCCACCGTGCT 60.360 61.111 0.00 0.00 0.00 4.40
5089 5205 2.672651 TGAATGCCCACCGTGCTG 60.673 61.111 0.00 0.00 0.00 4.41
5090 5206 2.672996 GAATGCCCACCGTGCTGT 60.673 61.111 0.00 0.00 0.00 4.40
5091 5207 2.981560 GAATGCCCACCGTGCTGTG 61.982 63.158 0.00 0.00 35.98 3.66
5096 5212 2.663520 CCACCGTGCTGTGCGTTA 60.664 61.111 0.00 0.00 34.85 3.18
5097 5213 2.248135 CCACCGTGCTGTGCGTTAA 61.248 57.895 0.00 0.00 34.85 2.01
5098 5214 1.573829 CCACCGTGCTGTGCGTTAAT 61.574 55.000 0.00 0.00 34.85 1.40
5099 5215 0.237235 CACCGTGCTGTGCGTTAATT 59.763 50.000 0.00 0.00 0.00 1.40
5100 5216 0.948678 ACCGTGCTGTGCGTTAATTT 59.051 45.000 0.00 0.00 0.00 1.82
5101 5217 1.335496 ACCGTGCTGTGCGTTAATTTT 59.665 42.857 0.00 0.00 0.00 1.82
5102 5218 1.713404 CCGTGCTGTGCGTTAATTTTG 59.287 47.619 0.00 0.00 0.00 2.44
5103 5219 2.380660 CGTGCTGTGCGTTAATTTTGT 58.619 42.857 0.00 0.00 0.00 2.83
5104 5220 2.786578 CGTGCTGTGCGTTAATTTTGTT 59.213 40.909 0.00 0.00 0.00 2.83
5105 5221 3.360574 CGTGCTGTGCGTTAATTTTGTTG 60.361 43.478 0.00 0.00 0.00 3.33
5106 5222 3.549873 GTGCTGTGCGTTAATTTTGTTGT 59.450 39.130 0.00 0.00 0.00 3.32
5107 5223 3.549471 TGCTGTGCGTTAATTTTGTTGTG 59.451 39.130 0.00 0.00 0.00 3.33
5108 5224 3.549873 GCTGTGCGTTAATTTTGTTGTGT 59.450 39.130 0.00 0.00 0.00 3.72
5109 5225 4.032331 GCTGTGCGTTAATTTTGTTGTGTT 59.968 37.500 0.00 0.00 0.00 3.32
5110 5226 5.445275 GCTGTGCGTTAATTTTGTTGTGTTT 60.445 36.000 0.00 0.00 0.00 2.83
5111 5227 6.237595 GCTGTGCGTTAATTTTGTTGTGTTTA 60.238 34.615 0.00 0.00 0.00 2.01
5112 5228 7.515998 GCTGTGCGTTAATTTTGTTGTGTTTAT 60.516 33.333 0.00 0.00 0.00 1.40
5113 5229 8.186178 TGTGCGTTAATTTTGTTGTGTTTATT 57.814 26.923 0.00 0.00 0.00 1.40
5114 5230 8.321716 TGTGCGTTAATTTTGTTGTGTTTATTC 58.678 29.630 0.00 0.00 0.00 1.75
5115 5231 8.321716 GTGCGTTAATTTTGTTGTGTTTATTCA 58.678 29.630 0.00 0.00 0.00 2.57
5116 5232 8.321716 TGCGTTAATTTTGTTGTGTTTATTCAC 58.678 29.630 0.00 0.00 38.63 3.18
5117 5233 8.321716 GCGTTAATTTTGTTGTGTTTATTCACA 58.678 29.630 0.00 0.00 44.96 3.58
5123 5239 9.612066 ATTTTGTTGTGTTTATTCACATTTCCT 57.388 25.926 0.47 0.00 45.73 3.36
5136 5252 8.833231 ATTCACATTTCCTAATATACGAGTGG 57.167 34.615 0.00 0.00 0.00 4.00
5137 5253 7.356089 TCACATTTCCTAATATACGAGTGGT 57.644 36.000 0.00 0.00 0.00 4.16
5138 5254 7.431249 TCACATTTCCTAATATACGAGTGGTC 58.569 38.462 0.00 0.00 0.00 4.02
5139 5255 6.645415 CACATTTCCTAATATACGAGTGGTCC 59.355 42.308 0.00 0.00 0.00 4.46
5140 5256 6.553852 ACATTTCCTAATATACGAGTGGTCCT 59.446 38.462 0.00 0.00 0.00 3.85
5141 5257 6.401047 TTTCCTAATATACGAGTGGTCCTG 57.599 41.667 0.00 0.00 0.00 3.86
5142 5258 5.314718 TCCTAATATACGAGTGGTCCTGA 57.685 43.478 0.00 0.00 0.00 3.86
5143 5259 5.068636 TCCTAATATACGAGTGGTCCTGAC 58.931 45.833 0.00 0.00 0.00 3.51
5144 5260 3.984508 AATATACGAGTGGTCCTGACG 57.015 47.619 0.00 0.00 0.00 4.35
5145 5261 2.408271 TATACGAGTGGTCCTGACGT 57.592 50.000 11.11 11.11 40.23 4.34
5146 5262 1.542492 ATACGAGTGGTCCTGACGTT 58.458 50.000 11.47 1.12 38.18 3.99
5147 5263 0.877071 TACGAGTGGTCCTGACGTTC 59.123 55.000 11.47 0.00 38.18 3.95
5148 5264 0.822532 ACGAGTGGTCCTGACGTTCT 60.823 55.000 0.00 0.00 33.48 3.01
5149 5265 0.109689 CGAGTGGTCCTGACGTTCTC 60.110 60.000 0.00 0.00 0.00 2.87
5150 5266 1.249407 GAGTGGTCCTGACGTTCTCT 58.751 55.000 0.00 0.00 0.00 3.10
5151 5267 1.200484 GAGTGGTCCTGACGTTCTCTC 59.800 57.143 0.00 0.00 0.00 3.20
5152 5268 0.244178 GTGGTCCTGACGTTCTCTCC 59.756 60.000 0.00 0.00 0.00 3.71
5153 5269 0.898789 TGGTCCTGACGTTCTCTCCC 60.899 60.000 0.00 0.00 0.00 4.30
5154 5270 1.507174 GTCCTGACGTTCTCTCCCG 59.493 63.158 0.00 0.00 0.00 5.14
5155 5271 1.074423 TCCTGACGTTCTCTCCCGT 59.926 57.895 0.00 0.00 40.54 5.28
5156 5272 0.538977 TCCTGACGTTCTCTCCCGTT 60.539 55.000 0.00 0.00 37.44 4.44
5157 5273 0.317479 CCTGACGTTCTCTCCCGTTT 59.683 55.000 0.00 0.00 37.44 3.60
5158 5274 1.419374 CTGACGTTCTCTCCCGTTTG 58.581 55.000 0.00 0.00 37.44 2.93
5159 5275 0.748450 TGACGTTCTCTCCCGTTTGT 59.252 50.000 0.00 0.00 37.44 2.83
5160 5276 1.137513 GACGTTCTCTCCCGTTTGTG 58.862 55.000 0.00 0.00 37.44 3.33
5161 5277 0.462789 ACGTTCTCTCCCGTTTGTGT 59.537 50.000 0.00 0.00 32.50 3.72
5162 5278 1.134610 ACGTTCTCTCCCGTTTGTGTT 60.135 47.619 0.00 0.00 32.50 3.32
5163 5279 1.937899 CGTTCTCTCCCGTTTGTGTTT 59.062 47.619 0.00 0.00 0.00 2.83
5164 5280 2.033151 CGTTCTCTCCCGTTTGTGTTTC 60.033 50.000 0.00 0.00 0.00 2.78
5165 5281 1.860676 TCTCTCCCGTTTGTGTTTCG 58.139 50.000 0.00 0.00 0.00 3.46
5166 5282 1.137479 TCTCTCCCGTTTGTGTTTCGT 59.863 47.619 0.00 0.00 0.00 3.85
5167 5283 1.937899 CTCTCCCGTTTGTGTTTCGTT 59.062 47.619 0.00 0.00 0.00 3.85
5168 5284 1.666700 TCTCCCGTTTGTGTTTCGTTG 59.333 47.619 0.00 0.00 0.00 4.10
5169 5285 1.399089 CTCCCGTTTGTGTTTCGTTGT 59.601 47.619 0.00 0.00 0.00 3.32
5170 5286 1.397692 TCCCGTTTGTGTTTCGTTGTC 59.602 47.619 0.00 0.00 0.00 3.18
5171 5287 1.130749 CCCGTTTGTGTTTCGTTGTCA 59.869 47.619 0.00 0.00 0.00 3.58
5172 5288 2.223386 CCCGTTTGTGTTTCGTTGTCAT 60.223 45.455 0.00 0.00 0.00 3.06
5173 5289 3.430931 CCGTTTGTGTTTCGTTGTCATT 58.569 40.909 0.00 0.00 0.00 2.57
5174 5290 3.239483 CCGTTTGTGTTTCGTTGTCATTG 59.761 43.478 0.00 0.00 0.00 2.82
5175 5291 4.092120 CGTTTGTGTTTCGTTGTCATTGA 58.908 39.130 0.00 0.00 0.00 2.57
5176 5292 4.732923 CGTTTGTGTTTCGTTGTCATTGAT 59.267 37.500 0.00 0.00 0.00 2.57
5177 5293 5.229052 CGTTTGTGTTTCGTTGTCATTGATT 59.771 36.000 0.00 0.00 0.00 2.57
5178 5294 6.412362 CGTTTGTGTTTCGTTGTCATTGATTA 59.588 34.615 0.00 0.00 0.00 1.75
5179 5295 7.543756 GTTTGTGTTTCGTTGTCATTGATTAC 58.456 34.615 0.00 0.00 0.00 1.89
5180 5296 5.753744 TGTGTTTCGTTGTCATTGATTACC 58.246 37.500 0.00 0.00 0.00 2.85
5181 5297 5.151389 GTGTTTCGTTGTCATTGATTACCC 58.849 41.667 0.00 0.00 0.00 3.69
5182 5298 5.048991 GTGTTTCGTTGTCATTGATTACCCT 60.049 40.000 0.00 0.00 0.00 4.34
5183 5299 5.049060 TGTTTCGTTGTCATTGATTACCCTG 60.049 40.000 0.00 0.00 0.00 4.45
5184 5300 4.280436 TCGTTGTCATTGATTACCCTGT 57.720 40.909 0.00 0.00 0.00 4.00
5185 5301 5.408880 TCGTTGTCATTGATTACCCTGTA 57.591 39.130 0.00 0.00 0.00 2.74
5186 5302 5.795972 TCGTTGTCATTGATTACCCTGTAA 58.204 37.500 0.00 0.00 0.00 2.41
5187 5303 5.872617 TCGTTGTCATTGATTACCCTGTAAG 59.127 40.000 0.00 0.00 0.00 2.34
5188 5304 5.872617 CGTTGTCATTGATTACCCTGTAAGA 59.127 40.000 0.00 0.00 34.07 2.10
5189 5305 6.538742 CGTTGTCATTGATTACCCTGTAAGAT 59.461 38.462 0.00 0.00 34.07 2.40
5190 5306 7.254455 CGTTGTCATTGATTACCCTGTAAGATC 60.254 40.741 0.00 0.00 34.07 2.75
5191 5307 7.194112 TGTCATTGATTACCCTGTAAGATCA 57.806 36.000 0.00 0.00 34.07 2.92
5192 5308 7.275183 TGTCATTGATTACCCTGTAAGATCAG 58.725 38.462 0.00 0.00 34.07 2.90
5193 5309 7.092891 TGTCATTGATTACCCTGTAAGATCAGT 60.093 37.037 0.00 0.00 34.07 3.41
5194 5310 8.421784 GTCATTGATTACCCTGTAAGATCAGTA 58.578 37.037 0.00 0.00 34.07 2.74
5195 5311 8.421784 TCATTGATTACCCTGTAAGATCAGTAC 58.578 37.037 0.00 0.00 34.07 2.73
5196 5312 7.973048 TTGATTACCCTGTAAGATCAGTACT 57.027 36.000 0.00 0.00 34.07 2.73
5197 5313 7.973048 TGATTACCCTGTAAGATCAGTACTT 57.027 36.000 0.00 0.00 34.07 2.24
5198 5314 9.483489 TTGATTACCCTGTAAGATCAGTACTTA 57.517 33.333 0.00 0.00 34.07 2.24
5199 5315 9.656323 TGATTACCCTGTAAGATCAGTACTTAT 57.344 33.333 0.00 0.00 34.07 1.73
5202 5318 7.125792 ACCCTGTAAGATCAGTACTTATTGG 57.874 40.000 0.00 0.00 34.07 3.16
5203 5319 6.901300 ACCCTGTAAGATCAGTACTTATTGGA 59.099 38.462 0.00 0.00 34.07 3.53
5204 5320 7.070074 ACCCTGTAAGATCAGTACTTATTGGAG 59.930 40.741 0.00 0.00 34.07 3.86
5205 5321 6.926272 CCTGTAAGATCAGTACTTATTGGAGC 59.074 42.308 0.00 0.00 34.07 4.70
5206 5322 6.817184 TGTAAGATCAGTACTTATTGGAGCC 58.183 40.000 0.00 0.00 33.41 4.70
5207 5323 5.957771 AAGATCAGTACTTATTGGAGCCA 57.042 39.130 0.00 0.00 0.00 4.75
5208 5324 5.283457 AGATCAGTACTTATTGGAGCCAC 57.717 43.478 0.00 0.00 0.00 5.01
5209 5325 3.906720 TCAGTACTTATTGGAGCCACC 57.093 47.619 0.00 0.00 39.54 4.61
5210 5326 2.504175 TCAGTACTTATTGGAGCCACCC 59.496 50.000 0.00 0.00 38.00 4.61
5211 5327 1.485066 AGTACTTATTGGAGCCACCCG 59.515 52.381 0.00 0.00 38.00 5.28
5212 5328 0.179468 TACTTATTGGAGCCACCCGC 59.821 55.000 0.00 0.00 38.00 6.13
5213 5329 1.077787 CTTATTGGAGCCACCCGCA 60.078 57.895 0.00 0.00 41.38 5.69
5214 5330 0.679640 CTTATTGGAGCCACCCGCAA 60.680 55.000 0.00 0.00 41.38 4.85
5215 5331 0.963355 TTATTGGAGCCACCCGCAAC 60.963 55.000 0.00 0.00 41.38 4.17
5218 5334 4.778143 GGAGCCACCCGCAACGAT 62.778 66.667 0.00 0.00 41.38 3.73
5219 5335 2.185867 GAGCCACCCGCAACGATA 59.814 61.111 0.00 0.00 41.38 2.92
5220 5336 1.448893 GAGCCACCCGCAACGATAA 60.449 57.895 0.00 0.00 41.38 1.75
5221 5337 1.003112 AGCCACCCGCAACGATAAA 60.003 52.632 0.00 0.00 41.38 1.40
5222 5338 0.393808 AGCCACCCGCAACGATAAAT 60.394 50.000 0.00 0.00 41.38 1.40
5223 5339 0.028902 GCCACCCGCAACGATAAATC 59.971 55.000 0.00 0.00 37.47 2.17
5224 5340 3.561924 GCCACCCGCAACGATAAATCG 62.562 57.143 10.67 10.67 46.15 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 105 0.106419 AACAACGGAGGAAAAGCCCA 60.106 50.000 0.00 0.00 37.37 5.36
107 109 1.975660 TGGGAACAACGGAGGAAAAG 58.024 50.000 0.00 0.00 37.44 2.27
148 150 3.713288 TCGGAAATAACGGCTCACATAG 58.287 45.455 0.00 0.00 0.00 2.23
180 183 1.077501 CAATCCGAGCATGGGGTGT 60.078 57.895 0.00 0.00 33.18 4.16
187 190 0.035152 TGCACCTTCAATCCGAGCAT 60.035 50.000 0.00 0.00 0.00 3.79
292 298 0.816825 AGGAATACTAGCGCCGTCGA 60.817 55.000 2.29 0.00 38.10 4.20
302 308 8.511969 TCATTCTTAGGAAGAGGAGGAATACTA 58.488 37.037 0.00 0.00 39.03 1.82
304 310 7.604657 TCATTCTTAGGAAGAGGAGGAATAC 57.395 40.000 0.00 0.00 39.03 1.89
324 331 5.011023 CCTAGAAAACCAGGTGCTTTTCATT 59.989 40.000 14.96 1.70 38.38 2.57
328 335 3.230976 CCCTAGAAAACCAGGTGCTTTT 58.769 45.455 0.00 0.00 0.00 2.27
385 392 0.534203 GACGCCCAAGTTGACTCCAA 60.534 55.000 3.87 0.00 0.00 3.53
394 401 1.838073 AAATCCCTCGACGCCCAAGT 61.838 55.000 0.00 0.00 0.00 3.16
473 484 3.766691 GTGGCTTCCTCCGCGGTA 61.767 66.667 27.15 11.20 0.00 4.02
560 572 0.385751 GATCATCGCTCGTTGGGAGA 59.614 55.000 0.00 3.49 46.23 3.71
611 623 5.467735 GTGCATACATCATCATCACTTGCTA 59.532 40.000 0.00 0.00 0.00 3.49
643 656 4.398358 GTGTGATACAGTACTAGGTCAGCA 59.602 45.833 0.00 0.00 0.00 4.41
723 736 1.688735 TGCCAGCTGAGTATAATCGCT 59.311 47.619 17.39 11.78 0.00 4.93
728 741 3.931907 AATGGTGCCAGCTGAGTATAA 57.068 42.857 17.39 0.00 0.00 0.98
729 742 4.347876 ACATAATGGTGCCAGCTGAGTATA 59.652 41.667 17.39 0.00 0.00 1.47
808 832 2.440409 GGGCCACATCATGTATGATCC 58.560 52.381 4.39 3.65 45.23 3.36
811 835 1.127343 TCGGGCCACATCATGTATGA 58.873 50.000 4.39 0.00 41.70 2.15
813 837 1.476833 GGTTCGGGCCACATCATGTAT 60.477 52.381 4.39 0.00 0.00 2.29
814 838 0.107410 GGTTCGGGCCACATCATGTA 60.107 55.000 4.39 0.00 0.00 2.29
815 839 1.378514 GGTTCGGGCCACATCATGT 60.379 57.895 4.39 0.00 0.00 3.21
887 912 4.047059 CTGGGCCGCACAAGCTTG 62.047 66.667 24.84 24.84 39.10 4.01
894 919 2.845752 TATGTTCGTCTGGGCCGCAC 62.846 60.000 0.00 0.00 0.00 5.34
916 941 2.991190 GTCGATTGTCAGGAAAGCGTAA 59.009 45.455 0.00 0.00 37.65 3.18
985 1010 0.883370 GTTTCGGTTTGGTCTCGGCT 60.883 55.000 0.00 0.00 0.00 5.52
1197 1223 3.804193 GCAACGGTAGCTGCTGGC 61.804 66.667 15.55 5.88 36.59 4.85
1200 1226 4.680237 TGCGCAACGGTAGCTGCT 62.680 61.111 8.16 7.57 37.32 4.24
1372 1407 3.665121 TCTAGATTCTAGGGGGCAGATCT 59.335 47.826 18.43 0.00 0.00 2.75
1426 1461 3.758300 ACAACGACACAAAGAGCAAAAG 58.242 40.909 0.00 0.00 0.00 2.27
1438 1473 0.913876 GCAAGCACAAACAACGACAC 59.086 50.000 0.00 0.00 0.00 3.67
1568 1604 6.326843 GGAGTATTACCCCCATATAGGCTAAG 59.673 46.154 0.00 0.00 35.39 2.18
1651 1687 9.511272 GGTAGAAAATCAACCCTTTTTAGACTA 57.489 33.333 0.00 0.00 0.00 2.59
1687 1724 5.447818 GCATCGTTCTTGAAAATACTCTGGG 60.448 44.000 0.00 0.00 0.00 4.45
1710 1747 3.799281 AGTCTGTAAGCATCTCTCAGC 57.201 47.619 0.00 0.00 0.00 4.26
1712 1749 5.728637 TTCAAGTCTGTAAGCATCTCTCA 57.271 39.130 0.00 0.00 0.00 3.27
1724 1761 4.755411 TCACTCGAGTTTTTCAAGTCTGT 58.245 39.130 17.26 0.00 30.88 3.41
1751 1788 1.330521 CCAATCCGCAGATTTACCACG 59.669 52.381 0.00 0.00 40.89 4.94
1765 1802 6.598850 ACAATTATTGCACCAAAATCCAATCC 59.401 34.615 4.68 0.00 0.00 3.01
1814 1852 6.839124 TTATGTTTCCACTAGTAACGGAGA 57.161 37.500 0.00 0.00 0.00 3.71
1960 1998 1.173913 GCAACACCAGTCATTACCCC 58.826 55.000 0.00 0.00 0.00 4.95
1962 2000 1.812571 CAGGCAACACCAGTCATTACC 59.187 52.381 0.00 0.00 43.14 2.85
1984 2022 9.790344 CATGAGAACTCCAGGATTTCTTATAAT 57.210 33.333 20.37 11.67 32.95 1.28
2035 2073 6.089685 GCACACTAACAGTTAGAAGTTAGAGC 59.910 42.308 24.59 16.46 46.28 4.09
2061 2101 8.560374 GCATAAGTACAAGGAGAAAATATGGAC 58.440 37.037 0.00 0.00 0.00 4.02
2081 2121 5.622770 ACAAGTCGTAAAAAGGGCATAAG 57.377 39.130 0.00 0.00 0.00 1.73
2159 2199 7.823745 AACAGGTTTCATGTAAATCTCACTT 57.176 32.000 0.00 0.00 36.33 3.16
2191 2231 1.144708 TCCAGGACCATCTGCAAACAA 59.855 47.619 0.00 0.00 33.64 2.83
2193 2233 1.457346 CTCCAGGACCATCTGCAAAC 58.543 55.000 0.00 0.00 33.64 2.93
2295 2338 1.635844 CATTGCGTAAGTAGCGGTCA 58.364 50.000 0.00 0.00 41.68 4.02
2364 2407 2.699954 AGGCCAAAGTATCACGACAAG 58.300 47.619 5.01 0.00 0.00 3.16
2370 2413 5.234116 CACAAAAACAAGGCCAAAGTATCAC 59.766 40.000 5.01 0.00 0.00 3.06
2380 2423 2.602257 AGAAGCACAAAAACAAGGCC 57.398 45.000 0.00 0.00 0.00 5.19
2389 2432 4.005650 CAGAAGGCATCTAGAAGCACAAA 58.994 43.478 20.62 0.00 36.32 2.83
2460 2503 1.112315 TCCACCACCAACCATTGCAC 61.112 55.000 0.00 0.00 0.00 4.57
2503 2546 1.440060 GACACCCATCATACGGCGA 59.560 57.895 16.62 0.00 0.00 5.54
2629 2672 2.198827 TACGTGAAACCTCCCTACGA 57.801 50.000 0.00 0.00 38.08 3.43
2670 2713 7.692460 AGAAATGAAGTTAAGCACATCATGA 57.308 32.000 0.00 0.00 41.92 3.07
2743 2786 8.739039 TCATTAACAAACAGGAATGGAACTATG 58.261 33.333 0.00 0.00 31.54 2.23
2761 2804 7.094805 GCCACAAGAACAAGAGTATCATTAACA 60.095 37.037 0.00 0.00 37.82 2.41
2770 2813 4.967084 TTAGGCCACAAGAACAAGAGTA 57.033 40.909 5.01 0.00 0.00 2.59
2784 2827 4.469657 ACTGAACAACAAAGATTAGGCCA 58.530 39.130 5.01 0.00 0.00 5.36
2785 2828 4.082733 GGACTGAACAACAAAGATTAGGCC 60.083 45.833 0.00 0.00 0.00 5.19
2790 2833 5.053978 AGAGGGACTGAACAACAAAGATT 57.946 39.130 0.00 0.00 41.55 2.40
2878 2922 5.049828 CACTTATGGTGCGAGATGATACAA 58.950 41.667 0.00 0.00 39.22 2.41
3330 3374 7.984422 AAGTACAACAGACAATTGATCATGA 57.016 32.000 13.59 0.00 0.00 3.07
3369 3413 2.289002 GCACAATCTACCTATGCTGCAC 59.711 50.000 3.57 0.00 33.44 4.57
3504 3548 9.965748 AATTGCAAATTTTACGCATACAATAAC 57.034 25.926 1.71 0.00 35.19 1.89
3515 3559 8.973378 TCTAGAACCAAAATTGCAAATTTTACG 58.027 29.630 9.77 9.50 30.85 3.18
3519 3563 9.783081 AATCTCTAGAACCAAAATTGCAAATTT 57.217 25.926 1.71 4.62 0.00 1.82
3693 3740 3.293337 CCATGCCATCAAGAATTCAGGA 58.707 45.455 8.44 4.88 0.00 3.86
3965 4012 2.267642 CCACCGGCGGAGAATTCA 59.732 61.111 35.78 0.00 0.00 2.57
4002 4049 2.941891 TTTCACGCTTTCACGACATC 57.058 45.000 0.00 0.00 36.70 3.06
4141 4189 4.493545 GCGTTACACATGATAAAAGACCGG 60.494 45.833 0.00 0.00 0.00 5.28
4143 4191 5.796350 AGCGTTACACATGATAAAAGACC 57.204 39.130 0.00 0.00 0.00 3.85
4187 4235 8.746052 ATATTACTAGCATGGCTAAACAAACA 57.254 30.769 0.00 0.00 40.82 2.83
4221 4269 2.159170 GGACAGATGGGAAGACGAAGAG 60.159 54.545 0.00 0.00 0.00 2.85
4232 4280 4.689062 ACCTAGGTATATGGACAGATGGG 58.311 47.826 14.41 0.00 0.00 4.00
4264 4313 5.878406 ACAGAGGGACTATAAAGGACATG 57.122 43.478 0.00 0.00 41.55 3.21
4267 4316 6.547930 AGAAACAGAGGGACTATAAAGGAC 57.452 41.667 0.00 0.00 41.55 3.85
4277 4326 7.387643 AGACTTGTATTTAGAAACAGAGGGAC 58.612 38.462 0.00 0.00 0.00 4.46
4374 4424 3.054802 AGGACTAGGAGCAAAATGAGTGG 60.055 47.826 0.00 0.00 0.00 4.00
4397 4447 9.678260 CCCTCCATTCCTAAATAGATTCAATAG 57.322 37.037 0.00 0.00 0.00 1.73
4403 4453 7.794683 TGTACTCCCTCCATTCCTAAATAGATT 59.205 37.037 0.00 0.00 0.00 2.40
4405 4455 6.689561 TGTACTCCCTCCATTCCTAAATAGA 58.310 40.000 0.00 0.00 0.00 1.98
4406 4456 6.996180 TGTACTCCCTCCATTCCTAAATAG 57.004 41.667 0.00 0.00 0.00 1.73
4417 4482 0.907704 AACCGCATGTACTCCCTCCA 60.908 55.000 0.00 0.00 0.00 3.86
4432 4497 1.588674 TCACTACCACAAAGCAACCG 58.411 50.000 0.00 0.00 0.00 4.44
4440 4505 3.260884 GGGAGAAGTGATCACTACCACAA 59.739 47.826 30.05 0.00 41.58 3.33
4456 4521 6.964086 ACTAGAGTTAATTAAGGTGGGGAGAA 59.036 38.462 0.00 0.00 0.00 2.87
4501 4566 6.377996 AGGCATGCAACTCTGAATTATAACAA 59.622 34.615 21.36 0.00 0.00 2.83
4503 4568 6.204359 CAGGCATGCAACTCTGAATTATAAC 58.796 40.000 21.36 0.00 0.00 1.89
4530 4595 5.472148 ACCACTTCGACATTTAACACGATA 58.528 37.500 0.00 0.00 34.85 2.92
4546 4611 6.655003 TCCAATTTAGAGTTGATGACCACTTC 59.345 38.462 0.00 0.00 0.00 3.01
4557 4622 7.452880 TTGACAATCCTCCAATTTAGAGTTG 57.547 36.000 2.42 3.85 0.00 3.16
4570 4635 6.263842 TCATCCAAATATGCTTGACAATCCTC 59.736 38.462 0.00 0.00 0.00 3.71
4591 4656 3.971245 AGGAGAGTGAACTTGGTCATC 57.029 47.619 0.00 0.00 0.00 2.92
4602 4667 7.898014 TCTATGCAAATACTTAGGAGAGTGA 57.102 36.000 0.00 0.00 0.00 3.41
4632 4697 1.561076 TGGCTAGACTTGGATGCATGT 59.439 47.619 2.46 5.40 0.00 3.21
4637 4702 5.091261 ACTTAAGTGGCTAGACTTGGATG 57.909 43.478 7.48 0.00 36.80 3.51
4650 4715 8.761575 ATGCATGAAACATTAAACTTAAGTGG 57.238 30.769 9.34 0.00 0.00 4.00
4654 4719 8.801299 TCCTGATGCATGAAACATTAAACTTAA 58.199 29.630 2.46 0.00 0.00 1.85
4655 4720 8.347004 TCCTGATGCATGAAACATTAAACTTA 57.653 30.769 2.46 0.00 0.00 2.24
4667 4732 3.256383 CCAAACAGTTCCTGATGCATGAA 59.744 43.478 2.46 0.00 35.18 2.57
4684 4753 8.876275 ATCAAACACATATGATATTGCCAAAC 57.124 30.769 10.38 0.00 34.61 2.93
4685 4754 9.315525 CAATCAAACACATATGATATTGCCAAA 57.684 29.630 10.38 0.00 35.29 3.28
4736 4817 3.492102 TGAGAGAAACCAACCCTGAAG 57.508 47.619 0.00 0.00 0.00 3.02
4751 4832 7.581213 ATCAGTAGAACTACTTCCATGAGAG 57.419 40.000 11.21 0.00 43.35 3.20
4854 4959 4.454678 ACGTCAGGACCACTCGTATATTA 58.545 43.478 6.17 0.00 33.04 0.98
4861 4966 0.109689 GAGAACGTCAGGACCACTCG 60.110 60.000 0.00 0.00 0.00 4.18
4865 4979 0.898789 GGGAGAGAACGTCAGGACCA 60.899 60.000 0.00 0.00 0.00 4.02
4866 4980 1.891616 GGGAGAGAACGTCAGGACC 59.108 63.158 0.00 0.00 0.00 4.46
4867 4981 1.242665 ACGGGAGAGAACGTCAGGAC 61.243 60.000 0.00 0.00 39.40 3.85
4871 4985 0.748450 ACAAACGGGAGAGAACGTCA 59.252 50.000 0.00 0.00 43.31 4.35
4872 4986 1.137513 CACAAACGGGAGAGAACGTC 58.862 55.000 0.00 0.00 43.31 4.34
4873 4987 0.462789 ACACAAACGGGAGAGAACGT 59.537 50.000 0.00 0.00 46.48 3.99
4874 4988 1.578583 AACACAAACGGGAGAGAACG 58.421 50.000 0.00 0.00 0.00 3.95
4875 4989 2.033151 CGAAACACAAACGGGAGAGAAC 60.033 50.000 0.00 0.00 0.00 3.01
4876 4990 2.206750 CGAAACACAAACGGGAGAGAA 58.793 47.619 0.00 0.00 0.00 2.87
4880 4994 1.399089 ACAACGAAACACAAACGGGAG 59.601 47.619 0.00 0.00 0.00 4.30
4881 4995 1.397692 GACAACGAAACACAAACGGGA 59.602 47.619 0.00 0.00 0.00 5.14
4882 4996 1.130749 TGACAACGAAACACAAACGGG 59.869 47.619 0.00 0.00 0.00 5.28
4883 4997 2.529136 TGACAACGAAACACAAACGG 57.471 45.000 0.00 0.00 0.00 4.44
4884 4998 4.092120 TCAATGACAACGAAACACAAACG 58.908 39.130 0.00 0.00 0.00 3.60
4887 5001 6.202937 GGTAATCAATGACAACGAAACACAA 58.797 36.000 0.00 0.00 0.00 3.33
4888 5002 5.278071 GGGTAATCAATGACAACGAAACACA 60.278 40.000 0.00 0.00 0.00 3.72
4889 5003 5.048991 AGGGTAATCAATGACAACGAAACAC 60.049 40.000 0.00 0.00 0.00 3.32
4890 5004 5.049060 CAGGGTAATCAATGACAACGAAACA 60.049 40.000 0.00 0.00 0.00 2.83
4891 5005 5.048991 ACAGGGTAATCAATGACAACGAAAC 60.049 40.000 0.00 0.00 0.00 2.78
4892 5006 5.067273 ACAGGGTAATCAATGACAACGAAA 58.933 37.500 0.00 0.00 0.00 3.46
4893 5007 4.647611 ACAGGGTAATCAATGACAACGAA 58.352 39.130 0.00 0.00 0.00 3.85
4964 5080 4.177026 TGGCACACAATGTTACAACAAAC 58.823 39.130 0.00 0.00 43.03 2.93
4977 5093 6.832520 AATACAACTATCATTGGCACACAA 57.167 33.333 0.00 0.00 44.54 3.33
4978 5094 6.832520 AAATACAACTATCATTGGCACACA 57.167 33.333 0.00 0.00 39.29 3.72
4979 5095 6.531240 CCAAAATACAACTATCATTGGCACAC 59.469 38.462 0.00 0.00 39.29 3.82
4980 5096 6.210385 ACCAAAATACAACTATCATTGGCACA 59.790 34.615 0.00 0.00 34.99 4.57
4981 5097 6.531240 CACCAAAATACAACTATCATTGGCAC 59.469 38.462 0.00 0.00 34.99 5.01
4982 5098 6.210385 ACACCAAAATACAACTATCATTGGCA 59.790 34.615 0.00 0.00 34.99 4.92
4983 5099 6.630071 ACACCAAAATACAACTATCATTGGC 58.370 36.000 0.00 0.00 34.99 4.52
4992 5108 8.608317 GCAAACAAATAACACCAAAATACAACT 58.392 29.630 0.00 0.00 0.00 3.16
4993 5109 8.608317 AGCAAACAAATAACACCAAAATACAAC 58.392 29.630 0.00 0.00 0.00 3.32
4994 5110 8.723942 AGCAAACAAATAACACCAAAATACAA 57.276 26.923 0.00 0.00 0.00 2.41
4995 5111 8.607459 CAAGCAAACAAATAACACCAAAATACA 58.393 29.630 0.00 0.00 0.00 2.29
4996 5112 7.585936 GCAAGCAAACAAATAACACCAAAATAC 59.414 33.333 0.00 0.00 0.00 1.89
4997 5113 7.254932 GGCAAGCAAACAAATAACACCAAAATA 60.255 33.333 0.00 0.00 0.00 1.40
4998 5114 6.459435 GGCAAGCAAACAAATAACACCAAAAT 60.459 34.615 0.00 0.00 0.00 1.82
4999 5115 5.163713 GGCAAGCAAACAAATAACACCAAAA 60.164 36.000 0.00 0.00 0.00 2.44
5000 5116 4.333926 GGCAAGCAAACAAATAACACCAAA 59.666 37.500 0.00 0.00 0.00 3.28
5001 5117 3.873952 GGCAAGCAAACAAATAACACCAA 59.126 39.130 0.00 0.00 0.00 3.67
5002 5118 3.133721 AGGCAAGCAAACAAATAACACCA 59.866 39.130 0.00 0.00 0.00 4.17
5003 5119 3.494251 CAGGCAAGCAAACAAATAACACC 59.506 43.478 0.00 0.00 0.00 4.16
5004 5120 3.494251 CCAGGCAAGCAAACAAATAACAC 59.506 43.478 0.00 0.00 0.00 3.32
5005 5121 3.494048 CCCAGGCAAGCAAACAAATAACA 60.494 43.478 0.00 0.00 0.00 2.41
5006 5122 3.066380 CCCAGGCAAGCAAACAAATAAC 58.934 45.455 0.00 0.00 0.00 1.89
5007 5123 2.968574 TCCCAGGCAAGCAAACAAATAA 59.031 40.909 0.00 0.00 0.00 1.40
5008 5124 2.603021 TCCCAGGCAAGCAAACAAATA 58.397 42.857 0.00 0.00 0.00 1.40
5009 5125 1.422531 TCCCAGGCAAGCAAACAAAT 58.577 45.000 0.00 0.00 0.00 2.32
5010 5126 1.422531 ATCCCAGGCAAGCAAACAAA 58.577 45.000 0.00 0.00 0.00 2.83
5011 5127 2.300956 TATCCCAGGCAAGCAAACAA 57.699 45.000 0.00 0.00 0.00 2.83
5012 5128 2.530460 ATATCCCAGGCAAGCAAACA 57.470 45.000 0.00 0.00 0.00 2.83
5013 5129 3.524541 CAAATATCCCAGGCAAGCAAAC 58.475 45.455 0.00 0.00 0.00 2.93
5014 5130 2.093553 GCAAATATCCCAGGCAAGCAAA 60.094 45.455 0.00 0.00 0.00 3.68
5015 5131 1.481772 GCAAATATCCCAGGCAAGCAA 59.518 47.619 0.00 0.00 0.00 3.91
5016 5132 1.113788 GCAAATATCCCAGGCAAGCA 58.886 50.000 0.00 0.00 0.00 3.91
5017 5133 1.113788 TGCAAATATCCCAGGCAAGC 58.886 50.000 0.00 0.00 0.00 4.01
5018 5134 1.410153 GGTGCAAATATCCCAGGCAAG 59.590 52.381 0.00 0.00 36.08 4.01
5019 5135 1.484038 GGTGCAAATATCCCAGGCAA 58.516 50.000 0.00 0.00 36.08 4.52
5020 5136 0.751277 CGGTGCAAATATCCCAGGCA 60.751 55.000 0.00 0.00 0.00 4.75
5021 5137 0.751643 ACGGTGCAAATATCCCAGGC 60.752 55.000 0.00 0.00 0.00 4.85
5022 5138 1.024271 CACGGTGCAAATATCCCAGG 58.976 55.000 0.00 0.00 0.00 4.45
5023 5139 0.381801 GCACGGTGCAAATATCCCAG 59.618 55.000 27.10 0.00 44.26 4.45
5024 5140 2.487918 GCACGGTGCAAATATCCCA 58.512 52.632 27.10 0.00 44.26 4.37
5035 5151 0.237235 AATTAACGCACAGCACGGTG 59.763 50.000 3.15 3.15 41.72 4.94
5036 5152 0.948678 AAATTAACGCACAGCACGGT 59.051 45.000 0.00 0.00 34.00 4.83
5037 5153 1.326576 CAAATTAACGCACAGCACGG 58.673 50.000 0.00 0.00 34.00 4.94
5038 5154 2.031037 ACAAATTAACGCACAGCACG 57.969 45.000 0.00 0.00 0.00 5.34
5039 5155 3.794028 TCAAACAAATTAACGCACAGCAC 59.206 39.130 0.00 0.00 0.00 4.40
5040 5156 4.033990 TCAAACAAATTAACGCACAGCA 57.966 36.364 0.00 0.00 0.00 4.41
5041 5157 5.051106 ACATTCAAACAAATTAACGCACAGC 60.051 36.000 0.00 0.00 0.00 4.40
5042 5158 6.509317 ACATTCAAACAAATTAACGCACAG 57.491 33.333 0.00 0.00 0.00 3.66
5043 5159 7.987268 TTACATTCAAACAAATTAACGCACA 57.013 28.000 0.00 0.00 0.00 4.57
5044 5160 8.484008 ACATTACATTCAAACAAATTAACGCAC 58.516 29.630 0.00 0.00 0.00 5.34
5045 5161 8.581057 ACATTACATTCAAACAAATTAACGCA 57.419 26.923 0.00 0.00 0.00 5.24
5046 5162 8.911662 AGACATTACATTCAAACAAATTAACGC 58.088 29.630 0.00 0.00 0.00 4.84
5052 5168 8.928733 GCATTCAGACATTACATTCAAACAAAT 58.071 29.630 0.00 0.00 0.00 2.32
5053 5169 7.384660 GGCATTCAGACATTACATTCAAACAAA 59.615 33.333 0.00 0.00 0.00 2.83
5054 5170 6.867816 GGCATTCAGACATTACATTCAAACAA 59.132 34.615 0.00 0.00 0.00 2.83
5055 5171 6.389091 GGCATTCAGACATTACATTCAAACA 58.611 36.000 0.00 0.00 0.00 2.83
5056 5172 5.807011 GGGCATTCAGACATTACATTCAAAC 59.193 40.000 0.00 0.00 0.00 2.93
5057 5173 5.479724 TGGGCATTCAGACATTACATTCAAA 59.520 36.000 0.00 0.00 0.00 2.69
5058 5174 5.015515 TGGGCATTCAGACATTACATTCAA 58.984 37.500 0.00 0.00 0.00 2.69
5059 5175 4.398988 GTGGGCATTCAGACATTACATTCA 59.601 41.667 0.00 0.00 0.00 2.57
5060 5176 4.202050 GGTGGGCATTCAGACATTACATTC 60.202 45.833 0.00 0.00 0.00 2.67
5061 5177 3.701040 GGTGGGCATTCAGACATTACATT 59.299 43.478 0.00 0.00 0.00 2.71
5062 5178 3.290710 GGTGGGCATTCAGACATTACAT 58.709 45.455 0.00 0.00 0.00 2.29
5063 5179 2.722094 GGTGGGCATTCAGACATTACA 58.278 47.619 0.00 0.00 0.00 2.41
5064 5180 1.670811 CGGTGGGCATTCAGACATTAC 59.329 52.381 0.00 0.00 0.00 1.89
5065 5181 1.280710 ACGGTGGGCATTCAGACATTA 59.719 47.619 0.00 0.00 0.00 1.90
5066 5182 0.038166 ACGGTGGGCATTCAGACATT 59.962 50.000 0.00 0.00 0.00 2.71
5067 5183 0.677731 CACGGTGGGCATTCAGACAT 60.678 55.000 0.00 0.00 0.00 3.06
5068 5184 1.302431 CACGGTGGGCATTCAGACA 60.302 57.895 0.00 0.00 0.00 3.41
5069 5185 2.690778 GCACGGTGGGCATTCAGAC 61.691 63.158 10.60 0.00 0.00 3.51
5070 5186 2.359850 GCACGGTGGGCATTCAGA 60.360 61.111 10.60 0.00 0.00 3.27
5071 5187 2.360350 AGCACGGTGGGCATTCAG 60.360 61.111 10.60 0.00 0.00 3.02
5072 5188 2.672651 CAGCACGGTGGGCATTCA 60.673 61.111 10.60 0.00 0.00 2.57
5073 5189 2.672996 ACAGCACGGTGGGCATTC 60.673 61.111 10.60 0.00 0.00 2.67
5074 5190 2.985282 CACAGCACGGTGGGCATT 60.985 61.111 10.60 0.00 35.13 3.56
5079 5195 1.573829 ATTAACGCACAGCACGGTGG 61.574 55.000 10.60 0.00 39.19 4.61
5080 5196 0.237235 AATTAACGCACAGCACGGTG 59.763 50.000 3.15 3.15 41.72 4.94
5081 5197 0.948678 AAATTAACGCACAGCACGGT 59.051 45.000 0.00 0.00 34.00 4.83
5082 5198 1.713404 CAAAATTAACGCACAGCACGG 59.287 47.619 0.00 0.00 34.00 4.94
5083 5199 2.380660 ACAAAATTAACGCACAGCACG 58.619 42.857 0.00 0.00 0.00 5.34
5084 5200 3.549873 ACAACAAAATTAACGCACAGCAC 59.450 39.130 0.00 0.00 0.00 4.40
5085 5201 3.549471 CACAACAAAATTAACGCACAGCA 59.451 39.130 0.00 0.00 0.00 4.41
5086 5202 3.549873 ACACAACAAAATTAACGCACAGC 59.450 39.130 0.00 0.00 0.00 4.40
5087 5203 5.694674 AACACAACAAAATTAACGCACAG 57.305 34.783 0.00 0.00 0.00 3.66
5088 5204 7.757097 ATAAACACAACAAAATTAACGCACA 57.243 28.000 0.00 0.00 0.00 4.57
5089 5205 8.321716 TGAATAAACACAACAAAATTAACGCAC 58.678 29.630 0.00 0.00 0.00 5.34
5090 5206 8.321716 GTGAATAAACACAACAAAATTAACGCA 58.678 29.630 0.00 0.00 40.11 5.24
5091 5207 8.321716 TGTGAATAAACACAACAAAATTAACGC 58.678 29.630 0.00 0.00 45.81 4.84
5110 5226 9.923143 CCACTCGTATATTAGGAAATGTGAATA 57.077 33.333 0.00 0.00 0.00 1.75
5111 5227 8.429641 ACCACTCGTATATTAGGAAATGTGAAT 58.570 33.333 0.00 0.00 0.00 2.57
5112 5228 7.788026 ACCACTCGTATATTAGGAAATGTGAA 58.212 34.615 0.00 0.00 0.00 3.18
5113 5229 7.356089 ACCACTCGTATATTAGGAAATGTGA 57.644 36.000 0.00 0.00 0.00 3.58
5114 5230 6.645415 GGACCACTCGTATATTAGGAAATGTG 59.355 42.308 0.00 0.00 0.00 3.21
5115 5231 6.553852 AGGACCACTCGTATATTAGGAAATGT 59.446 38.462 0.00 0.00 0.00 2.71
5116 5232 6.868864 CAGGACCACTCGTATATTAGGAAATG 59.131 42.308 0.00 0.00 0.00 2.32
5117 5233 6.781014 TCAGGACCACTCGTATATTAGGAAAT 59.219 38.462 0.00 0.00 0.00 2.17
5118 5234 6.040166 GTCAGGACCACTCGTATATTAGGAAA 59.960 42.308 0.00 0.00 0.00 3.13
5119 5235 5.533903 GTCAGGACCACTCGTATATTAGGAA 59.466 44.000 0.00 0.00 0.00 3.36
5120 5236 5.068636 GTCAGGACCACTCGTATATTAGGA 58.931 45.833 0.00 0.00 0.00 2.94
5121 5237 4.083431 CGTCAGGACCACTCGTATATTAGG 60.083 50.000 0.00 0.00 0.00 2.69
5122 5238 4.514441 ACGTCAGGACCACTCGTATATTAG 59.486 45.833 6.17 0.00 33.04 1.73
5123 5239 4.454678 ACGTCAGGACCACTCGTATATTA 58.545 43.478 6.17 0.00 33.04 0.98
5124 5240 3.285484 ACGTCAGGACCACTCGTATATT 58.715 45.455 6.17 0.00 33.04 1.28
5125 5241 2.928334 ACGTCAGGACCACTCGTATAT 58.072 47.619 6.17 0.00 33.04 0.86
5126 5242 2.408271 ACGTCAGGACCACTCGTATA 57.592 50.000 6.17 0.00 33.04 1.47
5127 5243 1.471684 GAACGTCAGGACCACTCGTAT 59.528 52.381 7.94 1.15 34.38 3.06
5128 5244 0.877071 GAACGTCAGGACCACTCGTA 59.123 55.000 7.94 0.00 34.38 3.43
5129 5245 0.822532 AGAACGTCAGGACCACTCGT 60.823 55.000 0.00 0.00 36.31 4.18
5130 5246 0.109689 GAGAACGTCAGGACCACTCG 60.110 60.000 0.00 0.00 0.00 4.18
5131 5247 1.200484 GAGAGAACGTCAGGACCACTC 59.800 57.143 0.00 0.00 0.00 3.51
5132 5248 1.249407 GAGAGAACGTCAGGACCACT 58.751 55.000 0.00 0.00 0.00 4.00
5133 5249 0.244178 GGAGAGAACGTCAGGACCAC 59.756 60.000 0.00 0.00 0.00 4.16
5134 5250 0.898789 GGGAGAGAACGTCAGGACCA 60.899 60.000 0.00 0.00 0.00 4.02
5135 5251 1.891616 GGGAGAGAACGTCAGGACC 59.108 63.158 0.00 0.00 0.00 4.46
5136 5252 1.242665 ACGGGAGAGAACGTCAGGAC 61.243 60.000 0.00 0.00 39.40 3.85
5137 5253 0.538977 AACGGGAGAGAACGTCAGGA 60.539 55.000 0.00 0.00 43.31 3.86
5138 5254 0.317479 AAACGGGAGAGAACGTCAGG 59.683 55.000 0.00 0.00 43.31 3.86
5139 5255 1.269621 ACAAACGGGAGAGAACGTCAG 60.270 52.381 0.00 0.00 43.31 3.51
5140 5256 0.748450 ACAAACGGGAGAGAACGTCA 59.252 50.000 0.00 0.00 43.31 4.35
5141 5257 1.137513 CACAAACGGGAGAGAACGTC 58.862 55.000 0.00 0.00 43.31 4.34
5142 5258 0.462789 ACACAAACGGGAGAGAACGT 59.537 50.000 0.00 0.00 46.48 3.99
5143 5259 1.578583 AACACAAACGGGAGAGAACG 58.421 50.000 0.00 0.00 0.00 3.95
5144 5260 2.033151 CGAAACACAAACGGGAGAGAAC 60.033 50.000 0.00 0.00 0.00 3.01
5145 5261 2.206750 CGAAACACAAACGGGAGAGAA 58.793 47.619 0.00 0.00 0.00 2.87
5146 5262 1.137479 ACGAAACACAAACGGGAGAGA 59.863 47.619 0.00 0.00 0.00 3.10
5147 5263 1.578583 ACGAAACACAAACGGGAGAG 58.421 50.000 0.00 0.00 0.00 3.20
5148 5264 1.666700 CAACGAAACACAAACGGGAGA 59.333 47.619 0.00 0.00 0.00 3.71
5149 5265 1.399089 ACAACGAAACACAAACGGGAG 59.601 47.619 0.00 0.00 0.00 4.30
5150 5266 1.397692 GACAACGAAACACAAACGGGA 59.602 47.619 0.00 0.00 0.00 5.14
5151 5267 1.130749 TGACAACGAAACACAAACGGG 59.869 47.619 0.00 0.00 0.00 5.28
5152 5268 2.529136 TGACAACGAAACACAAACGG 57.471 45.000 0.00 0.00 0.00 4.44
5153 5269 4.092120 TCAATGACAACGAAACACAAACG 58.908 39.130 0.00 0.00 0.00 3.60
5154 5270 6.567769 AATCAATGACAACGAAACACAAAC 57.432 33.333 0.00 0.00 0.00 2.93
5155 5271 6.693545 GGTAATCAATGACAACGAAACACAAA 59.306 34.615 0.00 0.00 0.00 2.83
5156 5272 6.202937 GGTAATCAATGACAACGAAACACAA 58.797 36.000 0.00 0.00 0.00 3.33
5157 5273 5.278071 GGGTAATCAATGACAACGAAACACA 60.278 40.000 0.00 0.00 0.00 3.72
5158 5274 5.048991 AGGGTAATCAATGACAACGAAACAC 60.049 40.000 0.00 0.00 0.00 3.32
5159 5275 5.049060 CAGGGTAATCAATGACAACGAAACA 60.049 40.000 0.00 0.00 0.00 2.83
5160 5276 5.048991 ACAGGGTAATCAATGACAACGAAAC 60.049 40.000 0.00 0.00 0.00 2.78
5161 5277 5.067273 ACAGGGTAATCAATGACAACGAAA 58.933 37.500 0.00 0.00 0.00 3.46
5162 5278 4.647611 ACAGGGTAATCAATGACAACGAA 58.352 39.130 0.00 0.00 0.00 3.85
5163 5279 4.280436 ACAGGGTAATCAATGACAACGA 57.720 40.909 0.00 0.00 0.00 3.85
5164 5280 5.872617 TCTTACAGGGTAATCAATGACAACG 59.127 40.000 0.00 0.00 0.00 4.10
5165 5281 7.552687 TGATCTTACAGGGTAATCAATGACAAC 59.447 37.037 0.00 0.00 0.00 3.32
5166 5282 7.629157 TGATCTTACAGGGTAATCAATGACAA 58.371 34.615 0.00 0.00 0.00 3.18
5167 5283 7.092891 ACTGATCTTACAGGGTAATCAATGACA 60.093 37.037 0.00 0.00 41.59 3.58
5168 5284 7.275920 ACTGATCTTACAGGGTAATCAATGAC 58.724 38.462 0.00 0.00 41.59 3.06
5169 5285 7.437713 ACTGATCTTACAGGGTAATCAATGA 57.562 36.000 0.00 0.00 41.59 2.57
5170 5286 8.424918 AGTACTGATCTTACAGGGTAATCAATG 58.575 37.037 0.00 0.00 41.59 2.82
5171 5287 8.554490 AGTACTGATCTTACAGGGTAATCAAT 57.446 34.615 0.00 0.00 41.59 2.57
5172 5288 7.973048 AGTACTGATCTTACAGGGTAATCAA 57.027 36.000 0.00 0.00 41.59 2.57
5173 5289 7.973048 AAGTACTGATCTTACAGGGTAATCA 57.027 36.000 0.00 0.00 41.59 2.57
5176 5292 8.701895 CCAATAAGTACTGATCTTACAGGGTAA 58.298 37.037 0.00 0.00 41.59 2.85
5177 5293 8.063153 TCCAATAAGTACTGATCTTACAGGGTA 58.937 37.037 0.00 0.00 41.59 3.69
5178 5294 6.901300 TCCAATAAGTACTGATCTTACAGGGT 59.099 38.462 0.00 0.00 41.59 4.34
5179 5295 7.361457 TCCAATAAGTACTGATCTTACAGGG 57.639 40.000 0.00 0.00 41.59 4.45
5180 5296 6.926272 GCTCCAATAAGTACTGATCTTACAGG 59.074 42.308 0.00 0.00 41.59 4.00
5181 5297 6.926272 GGCTCCAATAAGTACTGATCTTACAG 59.074 42.308 0.00 0.00 42.78 2.74
5182 5298 6.382859 TGGCTCCAATAAGTACTGATCTTACA 59.617 38.462 0.00 0.00 31.53 2.41
5183 5299 6.702282 GTGGCTCCAATAAGTACTGATCTTAC 59.298 42.308 0.00 0.00 31.53 2.34
5184 5300 6.183360 GGTGGCTCCAATAAGTACTGATCTTA 60.183 42.308 0.00 0.00 35.97 2.10
5185 5301 5.396884 GGTGGCTCCAATAAGTACTGATCTT 60.397 44.000 0.00 0.00 35.97 2.40
5186 5302 4.101741 GGTGGCTCCAATAAGTACTGATCT 59.898 45.833 0.00 0.00 35.97 2.75
5187 5303 4.381411 GGTGGCTCCAATAAGTACTGATC 58.619 47.826 0.00 0.00 35.97 2.92
5188 5304 3.136626 GGGTGGCTCCAATAAGTACTGAT 59.863 47.826 8.03 0.00 38.11 2.90
5189 5305 2.504175 GGGTGGCTCCAATAAGTACTGA 59.496 50.000 8.03 0.00 38.11 3.41
5190 5306 2.741878 CGGGTGGCTCCAATAAGTACTG 60.742 54.545 8.03 0.00 38.11 2.74
5191 5307 1.485066 CGGGTGGCTCCAATAAGTACT 59.515 52.381 8.03 0.00 38.11 2.73
5192 5308 1.949465 CGGGTGGCTCCAATAAGTAC 58.051 55.000 8.03 0.00 38.11 2.73
5193 5309 0.179468 GCGGGTGGCTCCAATAAGTA 59.821 55.000 8.03 0.00 39.11 2.24
5194 5310 1.077716 GCGGGTGGCTCCAATAAGT 60.078 57.895 8.03 0.00 39.11 2.24
5195 5311 0.679640 TTGCGGGTGGCTCCAATAAG 60.680 55.000 8.03 0.00 44.05 1.73
5196 5312 0.963355 GTTGCGGGTGGCTCCAATAA 60.963 55.000 8.03 0.00 44.05 1.40
5197 5313 1.377987 GTTGCGGGTGGCTCCAATA 60.378 57.895 8.03 0.00 44.05 1.90
5198 5314 2.676471 GTTGCGGGTGGCTCCAAT 60.676 61.111 8.03 0.00 44.05 3.16
5201 5317 2.862674 TTATCGTTGCGGGTGGCTCC 62.863 60.000 0.00 0.00 44.05 4.70
5202 5318 1.022451 TTTATCGTTGCGGGTGGCTC 61.022 55.000 0.00 0.00 44.05 4.70
5203 5319 0.393808 ATTTATCGTTGCGGGTGGCT 60.394 50.000 0.00 0.00 44.05 4.75
5204 5320 0.028902 GATTTATCGTTGCGGGTGGC 59.971 55.000 0.00 0.00 43.96 5.01
5205 5321 0.303493 CGATTTATCGTTGCGGGTGG 59.697 55.000 4.03 0.00 44.74 4.61
5206 5322 3.798506 CGATTTATCGTTGCGGGTG 57.201 52.632 4.03 0.00 44.74 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.