Multiple sequence alignment - TraesCS7B01G168100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G168100 chr7B 100.000 7055 0 0 1 7055 234911949 234904895 0.000000e+00 13029.0
1 TraesCS7B01G168100 chr7B 99.584 481 1 1 6374 6854 392671609 392671130 0.000000e+00 876.0
2 TraesCS7B01G168100 chr7B 95.690 116 4 1 1718 1832 327855992 327855877 1.210000e-42 185.0
3 TraesCS7B01G168100 chr7B 81.111 90 13 1 5421 5510 327705415 327705330 1.270000e-07 69.4
4 TraesCS7B01G168100 chr7B 81.111 90 13 1 5421 5510 327723167 327723082 1.270000e-07 69.4
5 TraesCS7B01G168100 chr7B 81.111 90 13 1 5421 5510 327741410 327741325 1.270000e-07 69.4
6 TraesCS7B01G168100 chr7B 81.111 90 13 1 5421 5510 327759117 327759032 1.270000e-07 69.4
7 TraesCS7B01G168100 chr7D 94.193 1722 61 15 2270 3968 256189328 256187623 0.000000e+00 2590.0
8 TraesCS7B01G168100 chr7D 92.610 1299 44 15 320 1582 256191470 256190188 0.000000e+00 1820.0
9 TraesCS7B01G168100 chr7D 91.676 937 43 11 4964 5897 256187093 256186189 0.000000e+00 1266.0
10 TraesCS7B01G168100 chr7D 90.441 680 63 2 6376 7055 64478533 64477856 0.000000e+00 894.0
11 TraesCS7B01G168100 chr7D 94.196 448 20 3 1829 2274 256189882 256189439 0.000000e+00 678.0
12 TraesCS7B01G168100 chr7D 90.224 491 20 8 5907 6372 256186156 256185669 3.620000e-172 616.0
13 TraesCS7B01G168100 chr7D 92.830 265 14 3 4681 4945 256187341 256187082 5.160000e-101 379.0
14 TraesCS7B01G168100 chr7D 96.842 190 5 1 2 190 256218489 256218300 4.110000e-82 316.0
15 TraesCS7B01G168100 chr7D 98.089 157 2 1 1570 1726 256190034 256189879 9.020000e-69 272.0
16 TraesCS7B01G168100 chr7D 95.652 138 6 0 3969 4106 256187542 256187405 9.210000e-54 222.0
17 TraesCS7B01G168100 chr7D 94.815 135 7 0 188 322 256191707 256191573 1.990000e-50 211.0
18 TraesCS7B01G168100 chr7D 94.737 57 3 0 4101 4157 256187381 256187325 9.750000e-14 89.8
19 TraesCS7B01G168100 chr7A 91.869 1439 71 14 4960 6372 275961555 275960137 0.000000e+00 1967.0
20 TraesCS7B01G168100 chr7A 88.169 1251 58 35 378 1561 275970114 275968887 0.000000e+00 1408.0
21 TraesCS7B01G168100 chr7A 95.553 832 27 5 2976 3801 275963058 275962231 0.000000e+00 1323.0
22 TraesCS7B01G168100 chr7A 90.102 293 17 8 1875 2159 275968448 275968160 3.110000e-98 370.0
23 TraesCS7B01G168100 chr7A 95.197 229 10 1 2205 2432 275968160 275967932 1.870000e-95 361.0
24 TraesCS7B01G168100 chr7A 92.763 152 6 3 4681 4832 275961772 275961626 1.540000e-51 215.0
25 TraesCS7B01G168100 chr7A 91.111 135 8 3 34 165 275970244 275970111 5.620000e-41 180.0
26 TraesCS7B01G168100 chr7A 93.069 101 7 0 1734 1834 28007650 28007550 1.590000e-31 148.0
27 TraesCS7B01G168100 chr7A 91.398 93 8 0 4863 4955 275961626 275961534 2.070000e-25 128.0
28 TraesCS7B01G168100 chr7A 94.915 59 2 1 3969 4027 275961944 275961887 2.710000e-14 91.6
29 TraesCS7B01G168100 chr7A 100.000 31 0 0 1829 1859 275968477 275968447 2.750000e-04 58.4
30 TraesCS7B01G168100 chr3B 98.387 682 10 1 6374 7055 64248840 64248160 0.000000e+00 1197.0
31 TraesCS7B01G168100 chr3B 91.715 688 54 3 6368 7055 23474169 23474853 0.000000e+00 952.0
32 TraesCS7B01G168100 chr3B 88.632 519 56 3 4165 4680 535696491 535695973 4.640000e-176 628.0
33 TraesCS7B01G168100 chr4A 96.921 682 10 4 6374 7055 731020502 731021172 0.000000e+00 1133.0
34 TraesCS7B01G168100 chr4A 90.090 111 11 0 1723 1833 692765529 692765419 2.050000e-30 145.0
35 TraesCS7B01G168100 chr4A 93.103 58 4 0 5419 5476 703430514 703430571 1.260000e-12 86.1
36 TraesCS7B01G168100 chr2D 96.486 683 22 2 6373 7055 19004459 19003779 0.000000e+00 1127.0
37 TraesCS7B01G168100 chr2D 96.340 683 24 1 6373 7055 18900229 18899548 0.000000e+00 1122.0
38 TraesCS7B01G168100 chr5D 95.315 683 30 2 6373 7055 24879145 24878465 0.000000e+00 1083.0
39 TraesCS7B01G168100 chr2A 93.139 685 40 7 6374 7055 447992866 447992186 0.000000e+00 998.0
40 TraesCS7B01G168100 chr2B 91.745 533 33 8 4156 4686 596072121 596071598 0.000000e+00 730.0
41 TraesCS7B01G168100 chrUn 89.942 517 49 3 4165 4680 2788656 2788142 0.000000e+00 664.0
42 TraesCS7B01G168100 chrUn 81.111 90 13 1 5421 5510 346286326 346286241 1.270000e-07 69.4
43 TraesCS7B01G168100 chr1B 89.555 517 51 3 4165 4680 36821888 36821374 0.000000e+00 652.0
44 TraesCS7B01G168100 chr1B 91.295 471 40 1 4165 4635 645520762 645521231 5.970000e-180 641.0
45 TraesCS7B01G168100 chr1B 88.077 520 56 6 4165 4680 35956743 35957260 4.680000e-171 612.0
46 TraesCS7B01G168100 chr1B 91.964 112 9 0 1721 1832 57643330 57643219 2.630000e-34 158.0
47 TraesCS7B01G168100 chr1B 88.764 89 6 3 5421 5509 686935314 686935398 9.680000e-19 106.0
48 TraesCS7B01G168100 chr1A 88.931 533 49 7 4159 4681 556760841 556760309 0.000000e+00 649.0
49 TraesCS7B01G168100 chr4B 88.417 518 56 4 4165 4680 167907627 167907112 7.770000e-174 621.0
50 TraesCS7B01G168100 chr4B 95.370 108 5 0 1725 1832 45409057 45409164 9.410000e-39 172.0
51 TraesCS7B01G168100 chr6D 87.885 520 58 5 4165 4680 381992267 381991749 2.180000e-169 606.0
52 TraesCS7B01G168100 chr3D 94.964 139 7 0 6917 7055 16126093 16125955 1.190000e-52 219.0
53 TraesCS7B01G168100 chr3D 100.000 38 0 0 5476 5513 524301250 524301213 3.530000e-08 71.3
54 TraesCS7B01G168100 chr5B 96.491 114 3 1 1719 1832 382948869 382948757 3.360000e-43 187.0
55 TraesCS7B01G168100 chr5B 94.444 108 6 0 1725 1832 603453702 603453809 4.380000e-37 167.0
56 TraesCS7B01G168100 chr6A 97.143 105 3 0 1728 1832 22197560 22197456 2.020000e-40 178.0
57 TraesCS7B01G168100 chr5A 94.643 112 5 1 1722 1832 688136236 688136347 9.410000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G168100 chr7B 234904895 234911949 7054 True 13029.00 13029 100.0000 1 7055 1 chr7B.!!$R1 7054
1 TraesCS7B01G168100 chr7D 64477856 64478533 677 True 894.00 894 90.4410 6376 7055 1 chr7D.!!$R1 679
2 TraesCS7B01G168100 chr7D 256185669 256191707 6038 True 814.38 2590 93.9022 188 6372 10 chr7D.!!$R3 6184
3 TraesCS7B01G168100 chr7A 275960137 275963058 2921 True 744.92 1967 93.2996 2976 6372 5 chr7A.!!$R2 3396
4 TraesCS7B01G168100 chr7A 275967932 275970244 2312 True 475.48 1408 92.9158 34 2432 5 chr7A.!!$R3 2398
5 TraesCS7B01G168100 chr3B 64248160 64248840 680 True 1197.00 1197 98.3870 6374 7055 1 chr3B.!!$R1 681
6 TraesCS7B01G168100 chr3B 23474169 23474853 684 False 952.00 952 91.7150 6368 7055 1 chr3B.!!$F1 687
7 TraesCS7B01G168100 chr3B 535695973 535696491 518 True 628.00 628 88.6320 4165 4680 1 chr3B.!!$R2 515
8 TraesCS7B01G168100 chr4A 731020502 731021172 670 False 1133.00 1133 96.9210 6374 7055 1 chr4A.!!$F2 681
9 TraesCS7B01G168100 chr2D 19003779 19004459 680 True 1127.00 1127 96.4860 6373 7055 1 chr2D.!!$R2 682
10 TraesCS7B01G168100 chr2D 18899548 18900229 681 True 1122.00 1122 96.3400 6373 7055 1 chr2D.!!$R1 682
11 TraesCS7B01G168100 chr5D 24878465 24879145 680 True 1083.00 1083 95.3150 6373 7055 1 chr5D.!!$R1 682
12 TraesCS7B01G168100 chr2A 447992186 447992866 680 True 998.00 998 93.1390 6374 7055 1 chr2A.!!$R1 681
13 TraesCS7B01G168100 chr2B 596071598 596072121 523 True 730.00 730 91.7450 4156 4686 1 chr2B.!!$R1 530
14 TraesCS7B01G168100 chrUn 2788142 2788656 514 True 664.00 664 89.9420 4165 4680 1 chrUn.!!$R1 515
15 TraesCS7B01G168100 chr1B 36821374 36821888 514 True 652.00 652 89.5550 4165 4680 1 chr1B.!!$R1 515
16 TraesCS7B01G168100 chr1B 35956743 35957260 517 False 612.00 612 88.0770 4165 4680 1 chr1B.!!$F1 515
17 TraesCS7B01G168100 chr1A 556760309 556760841 532 True 649.00 649 88.9310 4159 4681 1 chr1A.!!$R1 522
18 TraesCS7B01G168100 chr4B 167907112 167907627 515 True 621.00 621 88.4170 4165 4680 1 chr4B.!!$R1 515
19 TraesCS7B01G168100 chr6D 381991749 381992267 518 True 606.00 606 87.8850 4165 4680 1 chr6D.!!$R1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 325 0.100682 CTGCTAGCGGACGTGTGTAT 59.899 55.000 19.34 0.00 0.00 2.29 F
793 942 1.077828 TCACCTCACCTCACTCTCCAT 59.922 52.381 0.00 0.00 0.00 3.41 F
1793 2465 1.542987 CCCAAAACAGGGCAATGTTGG 60.543 52.381 7.93 6.89 42.49 3.77 F
2176 2855 0.451383 CTCAAATGCGCGGGAAATGA 59.549 50.000 8.83 1.15 0.00 2.57 F
3197 4007 3.096092 TGGACAATGATAAAAGGCCCAC 58.904 45.455 0.00 0.00 0.00 4.61 F
3860 4678 1.229428 TTCTTTGAGCTGGTTCTGCG 58.771 50.000 0.00 0.00 33.59 5.18 F
5272 6367 1.064017 TCTGGCTTTGGTGGAAGTGTT 60.064 47.619 0.00 0.00 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1817 2489 0.039180 TCAGCTACTCCCTCCGTTCA 59.961 55.000 0.00 0.00 0.00 3.18 R
2141 2820 0.678684 TGAGCAGGCCACATGTGATG 60.679 55.000 27.46 21.04 0.00 3.07 R
3406 4220 0.181114 TCCCTGATTCCGAATGCCAG 59.819 55.000 0.00 0.92 0.00 4.85 R
3842 4660 0.106708 ACGCAGAACCAGCTCAAAGA 59.893 50.000 0.00 0.00 0.00 2.52 R
4735 5829 1.072159 GAGCAGCTGGTCACCAACT 59.928 57.895 34.86 13.05 41.81 3.16 R
5733 6828 1.002624 GTTGATCGGTCTGGGGCAA 60.003 57.895 0.00 0.00 0.00 4.52 R
6279 7408 0.035152 ATGAATTGCCTGCGAGGTCA 60.035 50.000 4.45 0.00 37.80 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.398903 CTAACAACATTCGCGTCGAC 57.601 50.000 5.77 5.18 34.89 4.20
20 21 1.058695 CTAACAACATTCGCGTCGACC 59.941 52.381 10.58 1.77 34.89 4.79
21 22 0.876777 AACAACATTCGCGTCGACCA 60.877 50.000 10.58 0.00 34.89 4.02
22 23 0.669318 ACAACATTCGCGTCGACCAT 60.669 50.000 10.58 0.00 34.89 3.55
23 24 0.247262 CAACATTCGCGTCGACCATG 60.247 55.000 10.58 9.68 34.89 3.66
24 25 1.966493 AACATTCGCGTCGACCATGC 61.966 55.000 10.58 6.92 34.89 4.06
25 26 2.890474 ATTCGCGTCGACCATGCC 60.890 61.111 10.58 0.00 34.89 4.40
26 27 3.657448 ATTCGCGTCGACCATGCCA 62.657 57.895 10.58 0.00 34.89 4.92
27 28 2.923426 ATTCGCGTCGACCATGCCAT 62.923 55.000 10.58 0.00 34.89 4.40
28 29 3.928769 CGCGTCGACCATGCCATG 61.929 66.667 10.58 0.00 32.72 3.66
29 30 2.511373 GCGTCGACCATGCCATGA 60.511 61.111 10.58 0.00 0.00 3.07
30 31 2.106074 GCGTCGACCATGCCATGAA 61.106 57.895 10.58 0.00 0.00 2.57
31 32 1.715585 CGTCGACCATGCCATGAAC 59.284 57.895 10.58 0.00 0.00 3.18
32 33 1.715585 GTCGACCATGCCATGAACG 59.284 57.895 6.18 11.15 0.00 3.95
48 49 6.192360 CCATGAACGCTGTAAATAAAGCTAC 58.808 40.000 0.00 0.00 37.27 3.58
58 59 8.125448 GCTGTAAATAAAGCTACAGAATCCAAG 58.875 37.037 14.78 0.00 45.21 3.61
62 63 0.548510 AGCTACAGAATCCAAGGGGC 59.451 55.000 0.00 0.00 0.00 5.80
163 166 8.966069 AAGAAAATAGCCAACCTAGTTAGATC 57.034 34.615 0.00 0.00 33.52 2.75
164 167 8.325477 AGAAAATAGCCAACCTAGTTAGATCT 57.675 34.615 0.00 0.00 33.52 2.75
165 168 8.425703 AGAAAATAGCCAACCTAGTTAGATCTC 58.574 37.037 0.00 0.00 33.52 2.75
166 169 7.676683 AAATAGCCAACCTAGTTAGATCTCA 57.323 36.000 0.00 0.00 32.94 3.27
167 170 7.676683 AATAGCCAACCTAGTTAGATCTCAA 57.323 36.000 0.00 0.00 0.00 3.02
168 171 5.606348 AGCCAACCTAGTTAGATCTCAAG 57.394 43.478 0.00 0.00 0.00 3.02
169 172 5.273208 AGCCAACCTAGTTAGATCTCAAGA 58.727 41.667 0.00 0.00 0.00 3.02
170 173 5.128008 AGCCAACCTAGTTAGATCTCAAGAC 59.872 44.000 0.00 0.00 0.00 3.01
171 174 5.128008 GCCAACCTAGTTAGATCTCAAGACT 59.872 44.000 0.00 2.43 0.00 3.24
172 175 6.351456 GCCAACCTAGTTAGATCTCAAGACTT 60.351 42.308 0.00 0.00 0.00 3.01
173 176 7.038659 CCAACCTAGTTAGATCTCAAGACTTG 58.961 42.308 9.03 9.03 0.00 3.16
174 177 7.093727 CCAACCTAGTTAGATCTCAAGACTTGA 60.094 40.741 16.86 16.86 38.17 3.02
175 178 8.474025 CAACCTAGTTAGATCTCAAGACTTGAT 58.526 37.037 18.04 4.66 39.30 2.57
176 179 8.602472 ACCTAGTTAGATCTCAAGACTTGATT 57.398 34.615 18.04 9.14 39.30 2.57
177 180 9.702253 ACCTAGTTAGATCTCAAGACTTGATTA 57.298 33.333 18.04 10.12 39.30 1.75
212 215 2.414481 CACGGCAGAGTTCTCATTTCAG 59.586 50.000 2.64 0.00 0.00 3.02
218 221 3.923461 CAGAGTTCTCATTTCAGGACGAC 59.077 47.826 2.64 0.00 0.00 4.34
219 222 2.917971 GAGTTCTCATTTCAGGACGACG 59.082 50.000 0.00 0.00 0.00 5.12
240 243 4.578516 ACGAACCATGAAACTGAATCACAA 59.421 37.500 0.00 0.00 0.00 3.33
277 280 2.601905 AGAGGTTGGTGTAAGTACGGT 58.398 47.619 0.00 0.00 0.00 4.83
306 309 2.883253 GACGCCGAAGAGAGCTGC 60.883 66.667 0.00 0.00 0.00 5.25
322 325 0.100682 CTGCTAGCGGACGTGTGTAT 59.899 55.000 19.34 0.00 0.00 2.29
347 455 4.116961 GCGTGTGTAGATAGTGGCATTAA 58.883 43.478 0.00 0.00 0.00 1.40
367 475 7.630026 CATTAATGCTGACTTATTCTTACGCA 58.370 34.615 1.74 0.00 0.00 5.24
368 476 7.786178 TTAATGCTGACTTATTCTTACGCAT 57.214 32.000 0.00 0.00 38.37 4.73
369 477 5.663795 ATGCTGACTTATTCTTACGCATG 57.336 39.130 0.00 0.00 35.74 4.06
370 478 4.503910 TGCTGACTTATTCTTACGCATGT 58.496 39.130 0.00 0.00 0.00 3.21
371 479 4.935205 TGCTGACTTATTCTTACGCATGTT 59.065 37.500 0.00 0.00 0.00 2.71
381 489 5.638596 TCTTACGCATGTTCTGTTCTCTA 57.361 39.130 0.00 0.00 0.00 2.43
460 568 2.539476 CAAGTGTTGCACAAAACCTCC 58.461 47.619 0.00 0.00 36.74 4.30
468 576 1.628846 GCACAAAACCTCCCTCTCCTA 59.371 52.381 0.00 0.00 0.00 2.94
529 637 2.434884 CTGAGGATGCGTGCCGTT 60.435 61.111 0.00 0.00 0.00 4.44
561 669 4.031314 CCTGTATTACGAACGTCACACATG 59.969 45.833 2.45 0.00 0.00 3.21
648 765 4.063619 CCCCAAGGATAAGCATTAGCTGG 61.064 52.174 0.00 0.00 43.76 4.85
782 931 4.394712 CGGCCACCTCACCTCACC 62.395 72.222 2.24 0.00 0.00 4.02
783 932 2.930562 GGCCACCTCACCTCACCT 60.931 66.667 0.00 0.00 0.00 4.00
784 933 2.665603 GCCACCTCACCTCACCTC 59.334 66.667 0.00 0.00 0.00 3.85
785 934 2.217038 GCCACCTCACCTCACCTCA 61.217 63.158 0.00 0.00 0.00 3.86
786 935 1.674057 CCACCTCACCTCACCTCAC 59.326 63.158 0.00 0.00 0.00 3.51
793 942 1.077828 TCACCTCACCTCACTCTCCAT 59.922 52.381 0.00 0.00 0.00 3.41
1206 1367 2.056223 CCACGGGATGTACCTCGGT 61.056 63.158 0.00 0.00 36.91 4.69
1341 1502 3.604582 AGCATTCAGGCTCTTACAGTTC 58.395 45.455 0.00 0.00 41.05 3.01
1347 1508 6.959639 TTCAGGCTCTTACAGTTCAATTTT 57.040 33.333 0.00 0.00 0.00 1.82
1427 1614 2.092323 GCTGGGTTTACTGTGGGATTC 58.908 52.381 0.00 0.00 0.00 2.52
1652 2005 6.701400 GTGAAGCAATTTGATTTAGTTGTGGT 59.299 34.615 0.86 0.00 0.00 4.16
1729 2401 5.427036 TGTTTGACGGAAAACAGTAATCC 57.573 39.130 12.29 0.00 43.34 3.01
1730 2402 4.276431 TGTTTGACGGAAAACAGTAATCCC 59.724 41.667 12.29 0.00 43.34 3.85
1731 2403 4.360951 TTGACGGAAAACAGTAATCCCT 57.639 40.909 0.00 0.00 0.00 4.20
1732 2404 3.934068 TGACGGAAAACAGTAATCCCTC 58.066 45.455 0.00 0.00 0.00 4.30
1733 2405 3.581332 TGACGGAAAACAGTAATCCCTCT 59.419 43.478 0.00 0.00 0.00 3.69
1734 2406 3.933332 GACGGAAAACAGTAATCCCTCTG 59.067 47.826 0.00 0.00 37.65 3.35
1735 2407 3.326880 ACGGAAAACAGTAATCCCTCTGT 59.673 43.478 0.00 0.00 45.21 3.41
1742 2414 5.568620 ACAGTAATCCCTCTGTTCACTTT 57.431 39.130 0.00 0.00 41.33 2.66
1743 2415 5.941788 ACAGTAATCCCTCTGTTCACTTTT 58.058 37.500 0.00 0.00 41.33 2.27
1744 2416 7.074653 ACAGTAATCCCTCTGTTCACTTTTA 57.925 36.000 0.00 0.00 41.33 1.52
1745 2417 7.690256 ACAGTAATCCCTCTGTTCACTTTTAT 58.310 34.615 0.00 0.00 41.33 1.40
1746 2418 8.822805 ACAGTAATCCCTCTGTTCACTTTTATA 58.177 33.333 0.00 0.00 41.33 0.98
1747 2419 9.667107 CAGTAATCCCTCTGTTCACTTTTATAA 57.333 33.333 0.00 0.00 0.00 0.98
1748 2420 9.892130 AGTAATCCCTCTGTTCACTTTTATAAG 57.108 33.333 0.00 0.00 37.40 1.73
1749 2421 9.886132 GTAATCCCTCTGTTCACTTTTATAAGA 57.114 33.333 0.00 0.00 35.30 2.10
1750 2422 8.794335 AATCCCTCTGTTCACTTTTATAAGAC 57.206 34.615 0.00 0.00 35.30 3.01
1751 2423 6.708285 TCCCTCTGTTCACTTTTATAAGACC 58.292 40.000 0.00 0.00 35.30 3.85
1752 2424 6.500751 TCCCTCTGTTCACTTTTATAAGACCT 59.499 38.462 0.00 0.00 35.30 3.85
1753 2425 7.017254 TCCCTCTGTTCACTTTTATAAGACCTT 59.983 37.037 0.00 0.00 35.30 3.50
1754 2426 7.119846 CCCTCTGTTCACTTTTATAAGACCTTG 59.880 40.741 0.00 0.00 35.30 3.61
1755 2427 7.661847 CCTCTGTTCACTTTTATAAGACCTTGT 59.338 37.037 0.00 0.00 35.30 3.16
1756 2428 9.706691 CTCTGTTCACTTTTATAAGACCTTGTA 57.293 33.333 0.00 0.00 35.30 2.41
1757 2429 9.706691 TCTGTTCACTTTTATAAGACCTTGTAG 57.293 33.333 0.00 0.00 35.30 2.74
1758 2430 9.706691 CTGTTCACTTTTATAAGACCTTGTAGA 57.293 33.333 0.00 0.00 35.30 2.59
1759 2431 9.485206 TGTTCACTTTTATAAGACCTTGTAGAC 57.515 33.333 0.00 0.00 35.30 2.59
1760 2432 9.485206 GTTCACTTTTATAAGACCTTGTAGACA 57.515 33.333 0.00 0.00 35.30 3.41
1768 2440 9.871238 TTATAAGACCTTGTAGACAATTCAGAC 57.129 33.333 0.00 0.00 35.02 3.51
1769 2441 5.808366 AGACCTTGTAGACAATTCAGACA 57.192 39.130 0.00 0.00 35.02 3.41
1770 2442 6.365970 AGACCTTGTAGACAATTCAGACAT 57.634 37.500 0.00 0.00 35.02 3.06
1771 2443 6.402222 AGACCTTGTAGACAATTCAGACATC 58.598 40.000 0.00 0.00 35.02 3.06
1772 2444 6.014242 AGACCTTGTAGACAATTCAGACATCA 60.014 38.462 0.00 0.00 35.02 3.07
1773 2445 5.934625 ACCTTGTAGACAATTCAGACATCAC 59.065 40.000 0.00 0.00 35.02 3.06
1774 2446 5.352569 CCTTGTAGACAATTCAGACATCACC 59.647 44.000 0.00 0.00 35.02 4.02
1775 2447 4.832248 TGTAGACAATTCAGACATCACCC 58.168 43.478 0.00 0.00 0.00 4.61
1776 2448 4.285775 TGTAGACAATTCAGACATCACCCA 59.714 41.667 0.00 0.00 0.00 4.51
1777 2449 4.371624 AGACAATTCAGACATCACCCAA 57.628 40.909 0.00 0.00 0.00 4.12
1778 2450 4.728772 AGACAATTCAGACATCACCCAAA 58.271 39.130 0.00 0.00 0.00 3.28
1779 2451 5.139727 AGACAATTCAGACATCACCCAAAA 58.860 37.500 0.00 0.00 0.00 2.44
1780 2452 5.010012 AGACAATTCAGACATCACCCAAAAC 59.990 40.000 0.00 0.00 0.00 2.43
1781 2453 4.648762 ACAATTCAGACATCACCCAAAACA 59.351 37.500 0.00 0.00 0.00 2.83
1782 2454 5.221303 ACAATTCAGACATCACCCAAAACAG 60.221 40.000 0.00 0.00 0.00 3.16
1783 2455 2.862541 TCAGACATCACCCAAAACAGG 58.137 47.619 0.00 0.00 0.00 4.00
1792 2464 1.881591 CCCAAAACAGGGCAATGTTG 58.118 50.000 7.93 0.00 42.49 3.33
1793 2465 1.542987 CCCAAAACAGGGCAATGTTGG 60.543 52.381 7.93 6.89 42.49 3.77
1803 2475 2.798976 GCAATGTTGGCTGTCTGAAA 57.201 45.000 0.00 0.00 0.00 2.69
1804 2476 3.308438 GCAATGTTGGCTGTCTGAAAT 57.692 42.857 0.00 0.00 0.00 2.17
1805 2477 2.991190 GCAATGTTGGCTGTCTGAAATG 59.009 45.455 0.00 0.00 0.00 2.32
1806 2478 3.553508 GCAATGTTGGCTGTCTGAAATGT 60.554 43.478 0.00 0.00 0.00 2.71
1807 2479 4.232221 CAATGTTGGCTGTCTGAAATGTC 58.768 43.478 0.00 0.00 0.00 3.06
1808 2480 3.213206 TGTTGGCTGTCTGAAATGTCT 57.787 42.857 0.00 0.00 0.00 3.41
1809 2481 3.554934 TGTTGGCTGTCTGAAATGTCTT 58.445 40.909 0.00 0.00 0.00 3.01
1810 2482 4.713553 TGTTGGCTGTCTGAAATGTCTTA 58.286 39.130 0.00 0.00 0.00 2.10
1811 2483 5.316167 TGTTGGCTGTCTGAAATGTCTTAT 58.684 37.500 0.00 0.00 0.00 1.73
1812 2484 6.472016 TGTTGGCTGTCTGAAATGTCTTATA 58.528 36.000 0.00 0.00 0.00 0.98
1813 2485 6.939730 TGTTGGCTGTCTGAAATGTCTTATAA 59.060 34.615 0.00 0.00 0.00 0.98
1814 2486 7.446931 TGTTGGCTGTCTGAAATGTCTTATAAA 59.553 33.333 0.00 0.00 0.00 1.40
1815 2487 7.994425 TGGCTGTCTGAAATGTCTTATAAAA 57.006 32.000 0.00 0.00 0.00 1.52
1816 2488 8.044060 TGGCTGTCTGAAATGTCTTATAAAAG 57.956 34.615 0.00 0.00 0.00 2.27
1817 2489 7.665559 TGGCTGTCTGAAATGTCTTATAAAAGT 59.334 33.333 0.00 0.00 34.13 2.66
1818 2490 7.965107 GGCTGTCTGAAATGTCTTATAAAAGTG 59.035 37.037 0.00 0.00 34.13 3.16
1819 2491 8.721478 GCTGTCTGAAATGTCTTATAAAAGTGA 58.279 33.333 0.00 0.00 34.13 3.41
1822 2494 9.530129 GTCTGAAATGTCTTATAAAAGTGAACG 57.470 33.333 0.00 0.00 34.13 3.95
1823 2495 8.717821 TCTGAAATGTCTTATAAAAGTGAACGG 58.282 33.333 0.00 0.00 34.13 4.44
1824 2496 8.610248 TGAAATGTCTTATAAAAGTGAACGGA 57.390 30.769 0.00 0.00 34.13 4.69
1825 2497 8.717821 TGAAATGTCTTATAAAAGTGAACGGAG 58.282 33.333 0.00 0.00 34.13 4.63
1826 2498 7.611213 AATGTCTTATAAAAGTGAACGGAGG 57.389 36.000 0.00 0.00 34.13 4.30
1827 2499 5.484715 TGTCTTATAAAAGTGAACGGAGGG 58.515 41.667 0.00 0.00 34.13 4.30
1958 2635 9.174166 CCACTTACTGGCAAACTAAATTATAGT 57.826 33.333 0.00 0.00 31.36 2.12
2067 2744 6.352516 CCTCCTGCAATCTAAGATAGTGTTT 58.647 40.000 0.00 0.00 0.00 2.83
2070 2747 5.882557 CCTGCAATCTAAGATAGTGTTTGGT 59.117 40.000 0.00 0.00 0.00 3.67
2072 2749 5.647658 TGCAATCTAAGATAGTGTTTGGTGG 59.352 40.000 0.00 0.00 0.00 4.61
2082 2759 2.024369 AGTGTTTGGTGGGGACTTCTTT 60.024 45.455 0.00 0.00 0.00 2.52
2166 2845 1.940883 ATGTGGCCTGCTCAAATGCG 61.941 55.000 3.32 0.00 35.36 4.73
2167 2846 3.751246 TGGCCTGCTCAAATGCGC 61.751 61.111 3.32 0.00 35.36 6.09
2176 2855 0.451383 CTCAAATGCGCGGGAAATGA 59.549 50.000 8.83 1.15 0.00 2.57
2200 2879 8.976353 TGACTATACCCAATTTATTTGTTGCAT 58.024 29.630 0.00 0.00 33.15 3.96
2325 3119 3.435671 GTGTCCTGCGCAAACTAGTAAAT 59.564 43.478 13.05 0.00 0.00 1.40
2581 3384 7.890127 ACCTGGAGTTGAGATTTTTATCATCAA 59.110 33.333 0.00 0.00 0.00 2.57
2663 3466 3.716872 AGCATACTATTTACTGCCCAGGT 59.283 43.478 0.00 0.00 35.21 4.00
2776 3579 8.633075 TTCATGTGTTTTCTCAAAAGATTCAC 57.367 30.769 0.00 0.00 32.44 3.18
2779 3582 7.810766 TGTGTTTTCTCAAAAGATTCACAAC 57.189 32.000 0.00 0.00 35.67 3.32
2785 3588 9.927668 TTTTCTCAAAAGATTCACAACTTCTTT 57.072 25.926 0.00 0.00 40.47 2.52
2802 3605 6.945218 ACTTCTTTTGAGTAGATGCTCTCAT 58.055 36.000 0.00 0.00 39.85 2.90
2815 3618 4.134379 TGCTCTCATGACCTTTCATCTC 57.866 45.455 0.00 0.00 40.79 2.75
2880 3689 6.518493 AGTCGGTTCAGTAACATGTTTAAGA 58.482 36.000 17.78 9.22 37.34 2.10
3197 4007 3.096092 TGGACAATGATAAAAGGCCCAC 58.904 45.455 0.00 0.00 0.00 4.61
3331 4141 9.880254 TGGATAAATGGATGGATGATTTTCTTA 57.120 29.630 0.00 0.00 0.00 2.10
3413 4227 7.025520 ACTAATTGATAGATAGCCTGGCATT 57.974 36.000 22.65 10.56 35.47 3.56
3462 4276 4.955925 TGGCATGGTATAGTTTTGTTCG 57.044 40.909 0.00 0.00 0.00 3.95
3526 4343 3.834813 TGCATACCCCATTTTGCAGTTTA 59.165 39.130 0.00 0.00 39.98 2.01
3661 4478 7.229308 TGATGAGCTTGCTATTCATAGGAATT 58.771 34.615 8.07 0.00 40.87 2.17
3723 4540 9.185192 CTGAAGTACTGAATTGGTTCATTTTTC 57.815 33.333 0.00 0.00 43.08 2.29
3731 4549 8.977267 TGAATTGGTTCATTTTTCCATTTTCT 57.023 26.923 0.00 0.00 39.36 2.52
3837 4655 7.831690 TGGATGTACTTCATGGTTTAAGCATTA 59.168 33.333 6.93 0.00 33.46 1.90
3856 4674 7.710896 AGCATTATAATTCTTTGAGCTGGTTC 58.289 34.615 0.00 0.00 0.00 3.62
3860 4678 1.229428 TTCTTTGAGCTGGTTCTGCG 58.771 50.000 0.00 0.00 33.59 5.18
3926 4744 9.498176 AACTAAGTAGTTCGGTATGTTTGATTT 57.502 29.630 0.00 0.00 42.52 2.17
3935 4753 3.438781 GGTATGTTTGATTTCGTGCCTCA 59.561 43.478 0.00 0.00 0.00 3.86
3950 4768 1.750682 GCCTCACCTTTGTGTTGGAGT 60.751 52.381 10.09 0.00 43.26 3.85
3954 4772 2.026729 TCACCTTTGTGTTGGAGTCACA 60.027 45.455 0.00 0.00 43.26 3.58
4103 5143 2.703416 TCACATTAGCCTTGCAGACTG 58.297 47.619 0.00 0.00 0.00 3.51
4120 5193 2.549754 GACTGCTACACAACATGCTGTT 59.450 45.455 0.00 0.00 42.08 3.16
4154 5227 4.379499 GCTAAGCAAAACGCCTCTAAACAT 60.379 41.667 0.00 0.00 44.04 2.71
4441 5532 3.851128 GCTCCCTGGAGGCCGTAC 61.851 72.222 14.82 0.00 42.19 3.67
4567 5661 5.891198 TCCATATAGCCCACAATAAAGCAT 58.109 37.500 0.00 0.00 0.00 3.79
4625 5719 1.713297 ACTCCAGTTAACCACGTCCT 58.287 50.000 0.88 0.00 0.00 3.85
4683 5777 7.672983 ATTGAAGGCTATATGAATGGTAACG 57.327 36.000 0.00 0.00 42.51 3.18
4685 5779 3.939066 AGGCTATATGAATGGTAACGCC 58.061 45.455 0.00 0.00 42.51 5.68
4686 5780 3.583086 AGGCTATATGAATGGTAACGCCT 59.417 43.478 0.00 0.00 40.28 5.52
4687 5781 3.933332 GGCTATATGAATGGTAACGCCTC 59.067 47.826 0.00 0.00 42.51 4.70
4688 5782 4.322801 GGCTATATGAATGGTAACGCCTCT 60.323 45.833 0.00 0.00 42.51 3.69
4689 5783 5.105473 GGCTATATGAATGGTAACGCCTCTA 60.105 44.000 0.00 0.00 42.51 2.43
4690 5784 6.395629 GCTATATGAATGGTAACGCCTCTAA 58.604 40.000 0.00 0.00 42.51 2.10
4691 5785 6.872020 GCTATATGAATGGTAACGCCTCTAAA 59.128 38.462 0.00 0.00 42.51 1.85
4692 5786 7.148623 GCTATATGAATGGTAACGCCTCTAAAC 60.149 40.741 0.00 0.00 42.51 2.01
4693 5787 4.274602 TGAATGGTAACGCCTCTAAACA 57.725 40.909 0.00 0.00 42.51 2.83
4735 5829 3.452990 TCCTGCCGTCAATCTTGGTATAA 59.547 43.478 0.00 0.00 0.00 0.98
4736 5830 3.809832 CCTGCCGTCAATCTTGGTATAAG 59.190 47.826 0.00 0.00 0.00 1.73
4737 5831 4.442706 CTGCCGTCAATCTTGGTATAAGT 58.557 43.478 0.00 0.00 0.00 2.24
4758 5852 1.072159 GTGACCAGCTGCTCCAAGT 59.928 57.895 8.66 0.00 0.00 3.16
4759 5853 1.071987 TGACCAGCTGCTCCAAGTG 59.928 57.895 8.66 0.00 0.00 3.16
4797 5891 3.119708 GCAATTTGCTCCAGTAGTCTTGG 60.120 47.826 14.11 0.00 40.96 3.61
4838 5932 8.219660 TCCCTTGATAAATATCTTTAGGGAGG 57.780 38.462 21.58 8.52 43.05 4.30
4839 5933 8.022666 TCCCTTGATAAATATCTTTAGGGAGGA 58.977 37.037 21.58 10.23 43.05 3.71
4840 5934 8.325046 CCCTTGATAAATATCTTTAGGGAGGAG 58.675 40.741 19.92 4.38 42.56 3.69
4865 5959 6.667370 CAGTTATACCGCATTTGCATATCAA 58.333 36.000 3.13 0.00 42.21 2.57
5027 6121 6.038356 GCCATTGGTTTCACAAATCTGATAG 58.962 40.000 4.26 0.00 33.48 2.08
5065 6159 9.323985 CCTGGTCTTTATTTGAAAACAATGAAA 57.676 29.630 0.00 0.00 0.00 2.69
5068 6162 8.272866 GGTCTTTATTTGAAAACAATGAAACGG 58.727 33.333 0.00 0.00 0.00 4.44
5069 6163 8.813282 GTCTTTATTTGAAAACAATGAAACGGT 58.187 29.630 0.00 0.00 0.00 4.83
5070 6164 9.372369 TCTTTATTTGAAAACAATGAAACGGTT 57.628 25.926 0.00 0.00 0.00 4.44
5099 6194 6.173339 TGTCTACAAGGGTCAATGATCTTTC 58.827 40.000 0.00 0.00 0.00 2.62
5126 6221 7.593825 AGAATTGTTTCTTTTCCTTATGTCGG 58.406 34.615 0.00 0.00 39.18 4.79
5144 6239 3.067833 TCGGCGTGTTTCATTAATGTGA 58.932 40.909 14.97 3.10 0.00 3.58
5179 6274 5.410439 AGGCTGTATTTACCTTTGTGTTACG 59.590 40.000 0.00 0.00 0.00 3.18
5182 6277 5.307204 TGTATTTACCTTTGTGTTACGGCT 58.693 37.500 0.00 0.00 0.00 5.52
5194 6289 3.373130 GTGTTACGGCTGAGTAAATTCCC 59.627 47.826 0.00 0.00 38.19 3.97
5198 6293 1.674817 CGGCTGAGTAAATTCCCGTGT 60.675 52.381 0.00 0.00 0.00 4.49
5272 6367 1.064017 TCTGGCTTTGGTGGAAGTGTT 60.064 47.619 0.00 0.00 0.00 3.32
5405 6500 3.674997 TCCAACAAGGTCAGCAGAATAC 58.325 45.455 0.00 0.00 39.02 1.89
5509 6604 9.629649 TCTTATATTTTGGTATGGAGGGAGTAT 57.370 33.333 0.00 0.00 0.00 2.12
5521 6616 3.440522 GGAGGGAGTATTTTGTTGCACTC 59.559 47.826 0.00 0.00 37.32 3.51
5526 6621 5.438761 GAGTATTTTGTTGCACTCCTGTT 57.561 39.130 0.00 0.00 32.93 3.16
5527 6622 5.438761 AGTATTTTGTTGCACTCCTGTTC 57.561 39.130 0.00 0.00 0.00 3.18
5528 6623 4.887071 AGTATTTTGTTGCACTCCTGTTCA 59.113 37.500 0.00 0.00 0.00 3.18
5529 6624 3.781079 TTTTGTTGCACTCCTGTTCAG 57.219 42.857 0.00 0.00 0.00 3.02
5530 6625 2.418368 TTGTTGCACTCCTGTTCAGT 57.582 45.000 0.00 0.00 0.00 3.41
5531 6626 2.418368 TGTTGCACTCCTGTTCAGTT 57.582 45.000 0.00 0.00 0.00 3.16
5558 6653 2.582728 TGCAAGTTTGAGCTGGTTTG 57.417 45.000 0.00 0.00 0.00 2.93
5615 6710 5.855740 TCATAATTGCAATCAATCTGGCA 57.144 34.783 13.38 0.00 41.77 4.92
5733 6828 1.913951 TTGGATGGAGCGGCATGAGT 61.914 55.000 1.45 0.00 0.00 3.41
5840 6935 4.551215 AGTCTCTCCACTCTATCCCAAT 57.449 45.455 0.00 0.00 0.00 3.16
5853 6948 7.011763 CACTCTATCCCAATACATGACAAACTG 59.988 40.741 0.00 0.00 0.00 3.16
5854 6949 4.989279 ATCCCAATACATGACAAACTGC 57.011 40.909 0.00 0.00 0.00 4.40
5855 6950 4.032960 TCCCAATACATGACAAACTGCT 57.967 40.909 0.00 0.00 0.00 4.24
5889 6986 5.177696 GTGTAGTCCAGATGTTCACTTTGTC 59.822 44.000 0.00 0.00 0.00 3.18
5897 6994 3.936902 TGTTCACTTTGTCGTAGCAAC 57.063 42.857 0.00 0.00 0.00 4.17
6102 7222 2.287103 GGCGTTTCTCCGAAATACATCC 59.713 50.000 0.00 0.00 0.00 3.51
6103 7223 2.287103 GCGTTTCTCCGAAATACATCCC 59.713 50.000 0.00 0.00 0.00 3.85
6107 7227 3.330126 TCTCCGAAATACATCCCCTCT 57.670 47.619 0.00 0.00 0.00 3.69
6195 7323 3.389329 GCTGAATCCCTCCTGTATCTTGA 59.611 47.826 0.00 0.00 0.00 3.02
6216 7344 8.783093 TCTTGATTGACGATGTAATTTGAGTTT 58.217 29.630 0.00 0.00 0.00 2.66
6223 7351 8.089597 TGACGATGTAATTTGAGTTTGTACCTA 58.910 33.333 0.00 0.00 0.00 3.08
6232 7360 3.585289 TGAGTTTGTACCTATTGGCCTCA 59.415 43.478 3.32 0.00 36.63 3.86
6252 7380 1.026182 GCATGATTCTGCACCGACCA 61.026 55.000 0.00 0.00 41.87 4.02
6268 7397 4.058817 CCGACCATACCTCTAGATTTTGC 58.941 47.826 0.00 0.00 0.00 3.68
6277 7406 5.380043 ACCTCTAGATTTTGCCATGGTATG 58.620 41.667 14.67 0.00 0.00 2.39
6278 7407 4.217118 CCTCTAGATTTTGCCATGGTATGC 59.783 45.833 14.67 0.00 0.00 3.14
6279 7408 5.052693 TCTAGATTTTGCCATGGTATGCT 57.947 39.130 14.67 6.56 0.00 3.79
6280 7409 4.823442 TCTAGATTTTGCCATGGTATGCTG 59.177 41.667 14.67 0.00 0.00 4.41
6281 7410 3.634504 AGATTTTGCCATGGTATGCTGA 58.365 40.909 14.67 0.00 0.00 4.26
6282 7411 3.382546 AGATTTTGCCATGGTATGCTGAC 59.617 43.478 14.67 0.00 0.00 3.51
6283 7412 1.473258 TTTGCCATGGTATGCTGACC 58.527 50.000 14.67 0.97 40.21 4.02
6284 7413 0.625316 TTGCCATGGTATGCTGACCT 59.375 50.000 14.67 0.00 40.46 3.85
6285 7414 0.181114 TGCCATGGTATGCTGACCTC 59.819 55.000 14.67 0.00 40.46 3.85
6286 7415 0.882042 GCCATGGTATGCTGACCTCG 60.882 60.000 14.67 0.99 40.46 4.63
6287 7416 0.882042 CCATGGTATGCTGACCTCGC 60.882 60.000 2.57 0.00 40.46 5.03
6288 7417 0.179076 CATGGTATGCTGACCTCGCA 60.179 55.000 8.76 0.00 40.46 5.10
6289 7418 0.105593 ATGGTATGCTGACCTCGCAG 59.894 55.000 8.76 0.00 41.22 5.18
6572 7726 9.891828 GACAAACACTAACATTTACATCATCAA 57.108 29.630 0.00 0.00 0.00 2.57
6885 8039 5.762045 CGCCATCAGTATTTATTTTGAGGG 58.238 41.667 0.08 0.08 42.66 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.876777 TGGTCGACGCGAATGTTGTT 60.877 50.000 15.93 0.00 37.72 2.83
3 4 0.669318 ATGGTCGACGCGAATGTTGT 60.669 50.000 15.93 0.00 37.72 3.32
5 6 1.966493 GCATGGTCGACGCGAATGTT 61.966 55.000 15.93 0.00 37.72 2.71
6 7 2.452813 GCATGGTCGACGCGAATGT 61.453 57.895 15.93 0.00 37.72 2.71
7 8 2.321060 GCATGGTCGACGCGAATG 59.679 61.111 15.93 11.38 37.72 2.67
8 9 2.890474 GGCATGGTCGACGCGAAT 60.890 61.111 15.93 0.00 37.72 3.34
9 10 3.657448 ATGGCATGGTCGACGCGAA 62.657 57.895 15.93 0.22 37.72 4.70
10 11 4.141965 ATGGCATGGTCGACGCGA 62.142 61.111 15.93 5.25 0.00 5.87
11 12 3.928769 CATGGCATGGTCGACGCG 61.929 66.667 19.80 3.53 0.00 6.01
12 13 2.106074 TTCATGGCATGGTCGACGC 61.106 57.895 26.15 7.45 0.00 5.19
13 14 1.715585 GTTCATGGCATGGTCGACG 59.284 57.895 26.15 0.00 0.00 5.12
14 15 1.715585 CGTTCATGGCATGGTCGAC 59.284 57.895 27.40 19.53 0.00 4.20
15 16 2.106074 GCGTTCATGGCATGGTCGA 61.106 57.895 31.86 13.91 0.00 4.20
16 17 2.108514 AGCGTTCATGGCATGGTCG 61.109 57.895 26.15 26.80 0.00 4.79
17 18 1.308069 ACAGCGTTCATGGCATGGTC 61.308 55.000 26.15 17.55 0.00 4.02
18 19 0.035534 TACAGCGTTCATGGCATGGT 60.036 50.000 26.15 16.92 0.00 3.55
19 20 1.093972 TTACAGCGTTCATGGCATGG 58.906 50.000 26.15 12.26 0.00 3.66
20 21 2.917701 TTTACAGCGTTCATGGCATG 57.082 45.000 21.42 21.42 0.00 4.06
21 22 5.574891 TTTATTTACAGCGTTCATGGCAT 57.425 34.783 0.00 0.00 0.00 4.40
22 23 4.674101 GCTTTATTTACAGCGTTCATGGCA 60.674 41.667 0.00 0.00 0.00 4.92
23 24 3.791353 GCTTTATTTACAGCGTTCATGGC 59.209 43.478 0.00 0.00 0.00 4.40
24 25 5.235305 AGCTTTATTTACAGCGTTCATGG 57.765 39.130 0.00 0.00 41.24 3.66
25 26 6.771076 TGTAGCTTTATTTACAGCGTTCATG 58.229 36.000 0.00 0.00 41.24 3.07
26 27 6.816640 TCTGTAGCTTTATTTACAGCGTTCAT 59.183 34.615 7.12 0.00 44.00 2.57
27 28 6.160684 TCTGTAGCTTTATTTACAGCGTTCA 58.839 36.000 7.12 0.00 44.00 3.18
28 29 6.642683 TCTGTAGCTTTATTTACAGCGTTC 57.357 37.500 7.12 0.00 44.00 3.95
29 30 7.201617 GGATTCTGTAGCTTTATTTACAGCGTT 60.202 37.037 7.12 0.00 44.00 4.84
30 31 6.258068 GGATTCTGTAGCTTTATTTACAGCGT 59.742 38.462 7.12 0.00 44.00 5.07
31 32 6.257849 TGGATTCTGTAGCTTTATTTACAGCG 59.742 38.462 7.12 0.00 44.00 5.18
32 33 7.553881 TGGATTCTGTAGCTTTATTTACAGC 57.446 36.000 7.12 0.00 44.00 4.40
48 49 0.332632 TCCTTGCCCCTTGGATTCTG 59.667 55.000 0.00 0.00 0.00 3.02
58 59 0.758734 AAAAAGTTGCTCCTTGCCCC 59.241 50.000 0.00 0.00 42.00 5.80
62 63 4.214119 TGATCGAGAAAAAGTTGCTCCTTG 59.786 41.667 0.00 0.00 0.00 3.61
70 71 4.389077 CCGCTACTTGATCGAGAAAAAGTT 59.611 41.667 17.27 0.00 34.76 2.66
71 72 3.927142 CCGCTACTTGATCGAGAAAAAGT 59.073 43.478 17.27 7.93 36.80 2.66
80 81 1.736586 AGCTCCCGCTACTTGATCG 59.263 57.895 0.00 0.00 46.79 3.69
100 101 2.741228 GCAGAGATTTGACGAGGATGCT 60.741 50.000 0.00 0.00 0.00 3.79
107 108 5.390885 GCAATAAACAGCAGAGATTTGACGA 60.391 40.000 0.00 0.00 0.00 4.20
168 171 9.448294 CGTGTACTCCTAACTAATAATCAAGTC 57.552 37.037 0.00 0.00 0.00 3.01
169 172 8.411683 CCGTGTACTCCTAACTAATAATCAAGT 58.588 37.037 0.00 0.00 0.00 3.16
170 173 7.381678 GCCGTGTACTCCTAACTAATAATCAAG 59.618 40.741 0.00 0.00 0.00 3.02
171 174 7.147863 TGCCGTGTACTCCTAACTAATAATCAA 60.148 37.037 0.00 0.00 0.00 2.57
172 175 6.321945 TGCCGTGTACTCCTAACTAATAATCA 59.678 38.462 0.00 0.00 0.00 2.57
173 176 6.742109 TGCCGTGTACTCCTAACTAATAATC 58.258 40.000 0.00 0.00 0.00 1.75
174 177 6.548622 TCTGCCGTGTACTCCTAACTAATAAT 59.451 38.462 0.00 0.00 0.00 1.28
175 178 5.887598 TCTGCCGTGTACTCCTAACTAATAA 59.112 40.000 0.00 0.00 0.00 1.40
176 179 5.439721 TCTGCCGTGTACTCCTAACTAATA 58.560 41.667 0.00 0.00 0.00 0.98
177 180 4.275810 TCTGCCGTGTACTCCTAACTAAT 58.724 43.478 0.00 0.00 0.00 1.73
178 181 3.689347 TCTGCCGTGTACTCCTAACTAA 58.311 45.455 0.00 0.00 0.00 2.24
179 182 3.276857 CTCTGCCGTGTACTCCTAACTA 58.723 50.000 0.00 0.00 0.00 2.24
180 183 2.093106 CTCTGCCGTGTACTCCTAACT 58.907 52.381 0.00 0.00 0.00 2.24
181 184 1.817447 ACTCTGCCGTGTACTCCTAAC 59.183 52.381 0.00 0.00 0.00 2.34
182 185 2.211250 ACTCTGCCGTGTACTCCTAA 57.789 50.000 0.00 0.00 0.00 2.69
183 186 2.089980 GAACTCTGCCGTGTACTCCTA 58.910 52.381 0.00 0.00 0.00 2.94
184 187 0.889306 GAACTCTGCCGTGTACTCCT 59.111 55.000 0.00 0.00 0.00 3.69
185 188 0.889306 AGAACTCTGCCGTGTACTCC 59.111 55.000 0.00 0.00 0.00 3.85
186 189 1.540267 TGAGAACTCTGCCGTGTACTC 59.460 52.381 3.51 0.00 0.00 2.59
212 215 1.459592 CAGTTTCATGGTTCGTCGTCC 59.540 52.381 0.00 0.00 0.00 4.79
218 221 4.747540 TGTGATTCAGTTTCATGGTTCG 57.252 40.909 0.00 0.00 0.00 3.95
219 222 5.346822 GCATTGTGATTCAGTTTCATGGTTC 59.653 40.000 0.00 0.00 0.00 3.62
294 297 1.299014 CCGCTAGCAGCTCTCTTCG 60.299 63.158 16.45 0.00 39.60 3.79
306 309 1.545759 CACATACACACGTCCGCTAG 58.454 55.000 0.00 0.00 0.00 3.42
322 325 1.403647 GCCACTATCTACACACGCACA 60.404 52.381 0.00 0.00 0.00 4.57
347 455 5.118990 ACATGCGTAAGAATAAGTCAGCAT 58.881 37.500 0.00 0.00 43.73 3.79
355 463 7.097192 AGAGAACAGAACATGCGTAAGAATAA 58.903 34.615 0.00 0.00 43.02 1.40
381 489 4.881019 ACAGAGCTCAACTAACTCACAT 57.119 40.909 17.77 0.00 32.71 3.21
460 568 1.533625 CAGAGCGAGGATAGGAGAGG 58.466 60.000 0.00 0.00 0.00 3.69
468 576 0.820871 GTCAGAACCAGAGCGAGGAT 59.179 55.000 0.00 0.00 0.00 3.24
529 637 2.894902 TCGTAATACAGGATGCGCAAA 58.105 42.857 17.11 0.00 42.53 3.68
561 669 7.161829 TCTTTCTAATCGAATACGCATCAAC 57.838 36.000 0.00 0.00 39.58 3.18
648 765 4.386954 GCTACTGTAAACTGGACGGTTAAC 59.613 45.833 0.00 0.00 37.57 2.01
782 931 4.263243 GGGGGATAAATGATGGAGAGTGAG 60.263 50.000 0.00 0.00 0.00 3.51
783 932 3.652869 GGGGGATAAATGATGGAGAGTGA 59.347 47.826 0.00 0.00 0.00 3.41
784 933 4.026356 GGGGGATAAATGATGGAGAGTG 57.974 50.000 0.00 0.00 0.00 3.51
955 1109 0.181350 CTAGCTAGGGTTGGCCTTGG 59.819 60.000 13.32 0.00 34.45 3.61
956 1110 0.464554 GCTAGCTAGGGTTGGCCTTG 60.465 60.000 22.10 0.00 34.45 3.61
957 1111 0.621862 AGCTAGCTAGGGTTGGCCTT 60.622 55.000 17.69 0.00 31.13 4.35
958 1112 0.264955 TAGCTAGCTAGGGTTGGCCT 59.735 55.000 20.67 10.85 31.13 5.19
959 1113 0.682292 CTAGCTAGCTAGGGTTGGCC 59.318 60.000 34.95 0.00 41.58 5.36
960 1114 1.341852 GTCTAGCTAGCTAGGGTTGGC 59.658 57.143 38.82 20.80 44.45 4.52
961 1115 2.952116 AGTCTAGCTAGCTAGGGTTGG 58.048 52.381 38.82 21.66 44.45 3.77
1196 1357 3.740397 CGTCGCCACCGAGGTACA 61.740 66.667 0.00 0.00 45.38 2.90
1347 1508 6.541641 CACAAAATTCCCCACTTTTGATTTCA 59.458 34.615 13.04 0.00 42.31 2.69
1427 1614 2.095567 CACAGAAATCTCGCCAAACTGG 60.096 50.000 0.00 0.00 41.55 4.00
1652 2005 3.323115 TGTTCCAGGTATTTTGCATTGCA 59.677 39.130 7.38 7.38 36.47 4.08
1722 2394 9.892130 CTTATAAAAGTGAACAGAGGGATTACT 57.108 33.333 0.00 0.00 0.00 2.24
1723 2395 9.886132 TCTTATAAAAGTGAACAGAGGGATTAC 57.114 33.333 0.00 0.00 34.13 1.89
1724 2396 9.886132 GTCTTATAAAAGTGAACAGAGGGATTA 57.114 33.333 0.00 0.00 34.13 1.75
1725 2397 7.829706 GGTCTTATAAAAGTGAACAGAGGGATT 59.170 37.037 0.00 0.00 34.13 3.01
1726 2398 7.182930 AGGTCTTATAAAAGTGAACAGAGGGAT 59.817 37.037 0.00 0.00 34.13 3.85
1727 2399 6.500751 AGGTCTTATAAAAGTGAACAGAGGGA 59.499 38.462 0.00 0.00 34.13 4.20
1728 2400 6.712276 AGGTCTTATAAAAGTGAACAGAGGG 58.288 40.000 0.00 0.00 34.13 4.30
1729 2401 7.661847 ACAAGGTCTTATAAAAGTGAACAGAGG 59.338 37.037 0.00 0.00 34.13 3.69
1730 2402 8.608844 ACAAGGTCTTATAAAAGTGAACAGAG 57.391 34.615 0.00 0.00 34.13 3.35
1731 2403 9.706691 CTACAAGGTCTTATAAAAGTGAACAGA 57.293 33.333 0.00 0.00 34.13 3.41
1732 2404 9.706691 TCTACAAGGTCTTATAAAAGTGAACAG 57.293 33.333 0.00 0.00 34.13 3.16
1733 2405 9.485206 GTCTACAAGGTCTTATAAAAGTGAACA 57.515 33.333 0.00 0.00 34.13 3.18
1734 2406 9.485206 TGTCTACAAGGTCTTATAAAAGTGAAC 57.515 33.333 0.00 0.00 34.13 3.18
1742 2414 9.871238 GTCTGAATTGTCTACAAGGTCTTATAA 57.129 33.333 1.62 0.00 39.47 0.98
1743 2415 9.031537 TGTCTGAATTGTCTACAAGGTCTTATA 57.968 33.333 1.62 0.00 39.47 0.98
1744 2416 7.907389 TGTCTGAATTGTCTACAAGGTCTTAT 58.093 34.615 1.62 0.00 39.47 1.73
1745 2417 7.297936 TGTCTGAATTGTCTACAAGGTCTTA 57.702 36.000 1.62 0.00 39.47 2.10
1746 2418 6.174720 TGTCTGAATTGTCTACAAGGTCTT 57.825 37.500 1.62 0.00 39.47 3.01
1747 2419 5.808366 TGTCTGAATTGTCTACAAGGTCT 57.192 39.130 1.62 0.00 39.47 3.85
1748 2420 6.091441 GTGATGTCTGAATTGTCTACAAGGTC 59.909 42.308 1.62 2.72 39.47 3.85
1749 2421 5.934625 GTGATGTCTGAATTGTCTACAAGGT 59.065 40.000 1.62 0.00 39.47 3.50
1750 2422 5.352569 GGTGATGTCTGAATTGTCTACAAGG 59.647 44.000 1.62 0.00 39.47 3.61
1751 2423 5.352569 GGGTGATGTCTGAATTGTCTACAAG 59.647 44.000 1.62 0.00 39.47 3.16
1752 2424 5.221823 TGGGTGATGTCTGAATTGTCTACAA 60.222 40.000 0.00 0.00 40.51 2.41
1753 2425 4.285775 TGGGTGATGTCTGAATTGTCTACA 59.714 41.667 0.00 0.00 0.00 2.74
1754 2426 4.832248 TGGGTGATGTCTGAATTGTCTAC 58.168 43.478 0.00 0.00 0.00 2.59
1755 2427 5.497464 TTGGGTGATGTCTGAATTGTCTA 57.503 39.130 0.00 0.00 0.00 2.59
1756 2428 4.371624 TTGGGTGATGTCTGAATTGTCT 57.628 40.909 0.00 0.00 0.00 3.41
1757 2429 5.221224 TGTTTTGGGTGATGTCTGAATTGTC 60.221 40.000 0.00 0.00 0.00 3.18
1758 2430 4.648762 TGTTTTGGGTGATGTCTGAATTGT 59.351 37.500 0.00 0.00 0.00 2.71
1759 2431 5.199024 TGTTTTGGGTGATGTCTGAATTG 57.801 39.130 0.00 0.00 0.00 2.32
1760 2432 4.281688 CCTGTTTTGGGTGATGTCTGAATT 59.718 41.667 0.00 0.00 0.00 2.17
1761 2433 3.828451 CCTGTTTTGGGTGATGTCTGAAT 59.172 43.478 0.00 0.00 0.00 2.57
1762 2434 3.221771 CCTGTTTTGGGTGATGTCTGAA 58.778 45.455 0.00 0.00 0.00 3.02
1763 2435 2.488891 CCCTGTTTTGGGTGATGTCTGA 60.489 50.000 0.00 0.00 42.25 3.27
1764 2436 1.888512 CCCTGTTTTGGGTGATGTCTG 59.111 52.381 0.00 0.00 42.25 3.51
1765 2437 2.292828 CCCTGTTTTGGGTGATGTCT 57.707 50.000 0.00 0.00 42.25 3.41
1774 2446 1.881591 CCAACATTGCCCTGTTTTGG 58.118 50.000 0.00 0.00 37.25 3.28
1775 2447 1.202675 AGCCAACATTGCCCTGTTTTG 60.203 47.619 0.00 0.00 37.25 2.44
1776 2448 1.130777 AGCCAACATTGCCCTGTTTT 58.869 45.000 0.00 0.00 37.25 2.43
1777 2449 0.393820 CAGCCAACATTGCCCTGTTT 59.606 50.000 0.00 0.00 37.25 2.83
1778 2450 0.760189 ACAGCCAACATTGCCCTGTT 60.760 50.000 9.17 0.00 39.91 3.16
1779 2451 1.152483 ACAGCCAACATTGCCCTGT 60.152 52.632 9.17 9.17 35.69 4.00
1780 2452 0.896940 AGACAGCCAACATTGCCCTG 60.897 55.000 8.22 8.22 34.37 4.45
1781 2453 0.896940 CAGACAGCCAACATTGCCCT 60.897 55.000 0.00 0.00 0.00 5.19
1782 2454 0.895100 TCAGACAGCCAACATTGCCC 60.895 55.000 0.00 0.00 0.00 5.36
1783 2455 0.961019 TTCAGACAGCCAACATTGCC 59.039 50.000 0.00 0.00 0.00 4.52
1784 2456 2.798976 TTTCAGACAGCCAACATTGC 57.201 45.000 0.00 0.00 0.00 3.56
1785 2457 4.022589 AGACATTTCAGACAGCCAACATTG 60.023 41.667 0.00 0.00 0.00 2.82
1786 2458 4.147321 AGACATTTCAGACAGCCAACATT 58.853 39.130 0.00 0.00 0.00 2.71
1787 2459 3.759581 AGACATTTCAGACAGCCAACAT 58.240 40.909 0.00 0.00 0.00 2.71
1788 2460 3.213206 AGACATTTCAGACAGCCAACA 57.787 42.857 0.00 0.00 0.00 3.33
1789 2461 5.886960 ATAAGACATTTCAGACAGCCAAC 57.113 39.130 0.00 0.00 0.00 3.77
1790 2462 7.994425 TTTATAAGACATTTCAGACAGCCAA 57.006 32.000 0.00 0.00 0.00 4.52
1791 2463 7.665559 ACTTTTATAAGACATTTCAGACAGCCA 59.334 33.333 0.00 0.00 35.30 4.75
1792 2464 7.965107 CACTTTTATAAGACATTTCAGACAGCC 59.035 37.037 0.00 0.00 35.30 4.85
1793 2465 8.721478 TCACTTTTATAAGACATTTCAGACAGC 58.279 33.333 0.00 0.00 35.30 4.40
1796 2468 9.530129 CGTTCACTTTTATAAGACATTTCAGAC 57.470 33.333 0.00 0.00 35.30 3.51
1797 2469 8.717821 CCGTTCACTTTTATAAGACATTTCAGA 58.282 33.333 0.00 0.00 35.30 3.27
1798 2470 8.717821 TCCGTTCACTTTTATAAGACATTTCAG 58.282 33.333 0.00 0.00 35.30 3.02
1799 2471 8.610248 TCCGTTCACTTTTATAAGACATTTCA 57.390 30.769 0.00 0.00 35.30 2.69
1800 2472 8.175716 CCTCCGTTCACTTTTATAAGACATTTC 58.824 37.037 0.00 0.00 35.30 2.17
1801 2473 7.120726 CCCTCCGTTCACTTTTATAAGACATTT 59.879 37.037 0.00 0.00 35.30 2.32
1802 2474 6.598064 CCCTCCGTTCACTTTTATAAGACATT 59.402 38.462 0.00 0.00 35.30 2.71
1803 2475 6.070424 TCCCTCCGTTCACTTTTATAAGACAT 60.070 38.462 0.00 0.00 35.30 3.06
1804 2476 5.246656 TCCCTCCGTTCACTTTTATAAGACA 59.753 40.000 0.00 0.00 35.30 3.41
1805 2477 5.727434 TCCCTCCGTTCACTTTTATAAGAC 58.273 41.667 0.00 0.00 35.30 3.01
1806 2478 5.482878 ACTCCCTCCGTTCACTTTTATAAGA 59.517 40.000 0.00 0.00 35.30 2.10
1807 2479 5.731591 ACTCCCTCCGTTCACTTTTATAAG 58.268 41.667 0.00 0.00 37.40 1.73
1808 2480 5.750352 ACTCCCTCCGTTCACTTTTATAA 57.250 39.130 0.00 0.00 0.00 0.98
1809 2481 5.163478 GCTACTCCCTCCGTTCACTTTTATA 60.163 44.000 0.00 0.00 0.00 0.98
1810 2482 4.382793 GCTACTCCCTCCGTTCACTTTTAT 60.383 45.833 0.00 0.00 0.00 1.40
1811 2483 3.056322 GCTACTCCCTCCGTTCACTTTTA 60.056 47.826 0.00 0.00 0.00 1.52
1812 2484 2.289506 GCTACTCCCTCCGTTCACTTTT 60.290 50.000 0.00 0.00 0.00 2.27
1813 2485 1.275573 GCTACTCCCTCCGTTCACTTT 59.724 52.381 0.00 0.00 0.00 2.66
1814 2486 0.896226 GCTACTCCCTCCGTTCACTT 59.104 55.000 0.00 0.00 0.00 3.16
1815 2487 0.039911 AGCTACTCCCTCCGTTCACT 59.960 55.000 0.00 0.00 0.00 3.41
1816 2488 0.173708 CAGCTACTCCCTCCGTTCAC 59.826 60.000 0.00 0.00 0.00 3.18
1817 2489 0.039180 TCAGCTACTCCCTCCGTTCA 59.961 55.000 0.00 0.00 0.00 3.18
1818 2490 1.404843 ATCAGCTACTCCCTCCGTTC 58.595 55.000 0.00 0.00 0.00 3.95
1819 2491 1.867363 AATCAGCTACTCCCTCCGTT 58.133 50.000 0.00 0.00 0.00 4.44
1820 2492 1.867363 AAATCAGCTACTCCCTCCGT 58.133 50.000 0.00 0.00 0.00 4.69
1821 2493 3.385111 AGTTAAATCAGCTACTCCCTCCG 59.615 47.826 0.00 0.00 0.00 4.63
1822 2494 5.599242 ACTAGTTAAATCAGCTACTCCCTCC 59.401 44.000 0.00 0.00 0.00 4.30
1823 2495 6.718522 ACTAGTTAAATCAGCTACTCCCTC 57.281 41.667 0.00 0.00 0.00 4.30
1824 2496 7.355890 AGTACTAGTTAAATCAGCTACTCCCT 58.644 38.462 0.00 0.00 0.00 4.20
1825 2497 7.585579 AGTACTAGTTAAATCAGCTACTCCC 57.414 40.000 0.00 0.00 0.00 4.30
1826 2498 8.684520 TGAAGTACTAGTTAAATCAGCTACTCC 58.315 37.037 0.00 0.00 0.00 3.85
2067 2744 2.783510 AGAAGAAAAGAAGTCCCCACCA 59.216 45.455 0.00 0.00 0.00 4.17
2070 2747 3.973973 TGAGAGAAGAAAAGAAGTCCCCA 59.026 43.478 0.00 0.00 0.00 4.96
2072 2749 6.234177 TCAATGAGAGAAGAAAAGAAGTCCC 58.766 40.000 0.00 0.00 0.00 4.46
2082 2759 9.573166 TTTTATTCCAGTTCAATGAGAGAAGAA 57.427 29.630 0.00 0.00 0.00 2.52
2123 2801 9.315525 CATGTGATGGAATTAATAAATGCAACA 57.684 29.630 0.00 0.00 0.00 3.33
2128 2806 7.385752 GGCCACATGTGATGGAATTAATAAATG 59.614 37.037 27.46 5.01 39.87 2.32
2141 2820 0.678684 TGAGCAGGCCACATGTGATG 60.679 55.000 27.46 21.04 0.00 3.07
2166 2845 2.922740 TGGGTATAGTCATTTCCCGC 57.077 50.000 0.00 0.00 40.86 6.13
2167 2846 7.996098 ATAAATTGGGTATAGTCATTTCCCG 57.004 36.000 0.00 0.00 40.86 5.14
2176 2855 9.816354 GAATGCAACAAATAAATTGGGTATAGT 57.184 29.630 0.00 0.00 43.66 2.12
2235 2914 5.010922 AGAGAGATATGCCAGTTGATCTGAC 59.989 44.000 0.00 0.00 46.27 3.51
2256 2935 5.741388 AGCACAGTACAACAGAAAAAGAG 57.259 39.130 0.00 0.00 0.00 2.85
2631 3434 9.309516 GCAGTAAATAGTATGCTAACAGTGTAA 57.690 33.333 0.00 0.00 35.78 2.41
2633 3436 6.761714 GGCAGTAAATAGTATGCTAACAGTGT 59.238 38.462 0.00 0.00 38.71 3.55
2636 3439 6.288294 TGGGCAGTAAATAGTATGCTAACAG 58.712 40.000 0.00 0.00 38.71 3.16
2652 3455 3.181427 ACAAATTGGTAACCTGGGCAGTA 60.181 43.478 0.00 0.00 0.00 2.74
2728 3531 9.371136 TGAAACTTCATCTTAGTATGACATGTC 57.629 33.333 19.27 19.27 35.63 3.06
2802 3605 4.916041 ATGGACTTGAGATGAAAGGTCA 57.084 40.909 0.00 0.00 38.41 4.02
2815 3618 0.680618 TTTGGGCAGCAATGGACTTG 59.319 50.000 0.00 0.00 37.94 3.16
2880 3689 6.032094 GCGATTGATTGAGTGTCATTGAAAT 58.968 36.000 0.00 0.00 0.00 2.17
2902 3711 4.327898 AGCAAGAATACAAAATGCATTGCG 59.672 37.500 13.82 9.68 44.80 4.85
3118 3928 1.409064 GCCCGAGATCATGTACTCACA 59.591 52.381 16.96 0.00 39.52 3.58
3197 4007 1.663695 AATTACCGCTTGATGGACCG 58.336 50.000 0.00 0.00 0.00 4.79
3406 4220 0.181114 TCCCTGATTCCGAATGCCAG 59.819 55.000 0.00 0.92 0.00 4.85
3413 4227 3.045634 ACCAATGTATCCCTGATTCCGA 58.954 45.455 0.00 0.00 0.00 4.55
3462 4276 8.147704 TCCCTTTATTTCCAACATTTTCAAGAC 58.852 33.333 0.00 0.00 0.00 3.01
3526 4343 2.765699 GTCAAGAGCTCCCATCTTCTCT 59.234 50.000 10.93 0.00 34.80 3.10
3661 4478 1.000385 CCAAATTGCTGTTCAAGGCGA 60.000 47.619 0.00 0.00 38.22 5.54
3723 4540 3.379372 AGATTGACATGCGGAGAAAATGG 59.621 43.478 0.00 0.00 0.00 3.16
3731 4549 6.374053 TCAATTAAGAAAGATTGACATGCGGA 59.626 34.615 0.00 0.00 37.35 5.54
3812 4630 6.699575 ATGCTTAAACCATGAAGTACATCC 57.300 37.500 0.00 0.00 37.07 3.51
3837 4655 4.095483 CGCAGAACCAGCTCAAAGAATTAT 59.905 41.667 0.00 0.00 0.00 1.28
3842 4660 0.106708 ACGCAGAACCAGCTCAAAGA 59.893 50.000 0.00 0.00 0.00 2.52
3921 4739 1.879380 CAAAGGTGAGGCACGAAATCA 59.121 47.619 0.00 0.00 34.83 2.57
3935 4753 2.799126 TGTGACTCCAACACAAAGGT 57.201 45.000 0.00 0.00 43.73 3.50
3950 4768 8.637196 AGCAACTATAGTACATAGCTATGTGA 57.363 34.615 38.09 26.57 45.77 3.58
4032 5072 1.497286 TGTTCTGGCAGTTAAACCCCT 59.503 47.619 15.27 0.00 0.00 4.79
4033 5073 1.611977 GTGTTCTGGCAGTTAAACCCC 59.388 52.381 15.27 2.05 0.00 4.95
4120 5193 5.560183 GCGTTTTGCTTAGCTTAGTTTCAGA 60.560 40.000 5.60 0.00 41.73 3.27
4441 5532 2.631418 ACGTGGTCATTACTCACTCG 57.369 50.000 0.00 0.00 0.00 4.18
4513 5607 9.551734 CAGGAATGATATGATCTTTAACAGACA 57.448 33.333 0.00 0.00 32.83 3.41
4567 5661 5.872617 CGGCACAAATTCGGATAGGAATATA 59.127 40.000 0.00 0.00 35.65 0.86
4625 5719 6.428465 TCCAGACAGCATTGAAACGTTATTTA 59.572 34.615 0.00 0.00 0.00 1.40
4681 5775 3.583086 AGGGCATATATGTTTAGAGGCGT 59.417 43.478 14.14 0.00 27.43 5.68
4682 5776 3.935203 CAGGGCATATATGTTTAGAGGCG 59.065 47.826 14.14 0.00 27.43 5.52
4683 5777 3.691609 GCAGGGCATATATGTTTAGAGGC 59.308 47.826 14.14 5.98 0.00 4.70
4685 5779 4.697352 GTGGCAGGGCATATATGTTTAGAG 59.303 45.833 14.14 2.02 0.00 2.43
4686 5780 4.506625 GGTGGCAGGGCATATATGTTTAGA 60.507 45.833 14.14 0.00 0.00 2.10
4687 5781 3.758554 GGTGGCAGGGCATATATGTTTAG 59.241 47.826 14.14 4.23 0.00 1.85
4688 5782 3.397618 AGGTGGCAGGGCATATATGTTTA 59.602 43.478 14.14 0.00 0.00 2.01
4689 5783 2.177669 AGGTGGCAGGGCATATATGTTT 59.822 45.455 14.14 0.00 0.00 2.83
4690 5784 1.782752 AGGTGGCAGGGCATATATGTT 59.217 47.619 14.14 0.00 0.00 2.71
4691 5785 1.352352 GAGGTGGCAGGGCATATATGT 59.648 52.381 14.14 0.00 0.00 2.29
4692 5786 1.352017 TGAGGTGGCAGGGCATATATG 59.648 52.381 8.45 8.45 0.00 1.78
4693 5787 1.746157 TGAGGTGGCAGGGCATATAT 58.254 50.000 0.00 0.00 0.00 0.86
4735 5829 1.072159 GAGCAGCTGGTCACCAACT 59.928 57.895 34.86 13.05 41.81 3.16
4736 5830 1.968540 GGAGCAGCTGGTCACCAAC 60.969 63.158 38.37 22.05 43.82 3.77
4737 5831 1.993701 TTGGAGCAGCTGGTCACCAA 61.994 55.000 38.37 32.25 43.82 3.67
4758 5852 1.454201 TGCAACCAACGTCTTCAACA 58.546 45.000 0.00 0.00 0.00 3.33
4759 5853 2.553079 TTGCAACCAACGTCTTCAAC 57.447 45.000 0.00 0.00 0.00 3.18
4828 5922 4.262079 CGGTATAACTGCTCCTCCCTAAAG 60.262 50.000 0.00 0.00 0.00 1.85
4839 5933 8.862084 TTGATATGCAAATGCGGTATAACTGCT 61.862 37.037 11.80 0.00 41.37 4.24
4840 5934 6.786827 TTGATATGCAAATGCGGTATAACTGC 60.787 38.462 3.89 3.89 45.83 4.40
4865 5959 8.712228 AAATATCTCCACAACTCTTTTCCTTT 57.288 30.769 0.00 0.00 0.00 3.11
4972 6066 7.775093 GTGCAGGAATGCTGGGAAATATATATA 59.225 37.037 3.49 0.00 35.49 0.86
4975 6069 4.768968 GTGCAGGAATGCTGGGAAATATAT 59.231 41.667 3.49 0.00 35.49 0.86
4978 6072 2.291475 TGTGCAGGAATGCTGGGAAATA 60.291 45.455 3.49 0.00 35.49 1.40
4992 6086 1.294138 CCAATGGCCTTTGTGCAGG 59.706 57.895 25.10 9.82 36.95 4.85
5027 6121 7.468141 AATAAAGACCAGGAAACCAAATCTC 57.532 36.000 0.00 0.00 0.00 2.75
5036 6130 9.323985 CATTGTTTTCAAATAAAGACCAGGAAA 57.676 29.630 0.00 0.00 43.39 3.13
5065 6159 3.773119 ACCCTTGTAGACATGATAACCGT 59.227 43.478 0.00 0.00 0.00 4.83
5066 6160 4.142026 TGACCCTTGTAGACATGATAACCG 60.142 45.833 0.00 0.00 0.00 4.44
5068 6162 7.047891 TCATTGACCCTTGTAGACATGATAAC 58.952 38.462 0.00 0.00 0.00 1.89
5069 6163 7.194112 TCATTGACCCTTGTAGACATGATAA 57.806 36.000 0.00 0.00 0.00 1.75
5070 6164 6.806668 TCATTGACCCTTGTAGACATGATA 57.193 37.500 0.00 0.00 0.00 2.15
5099 6194 9.760660 CGACATAAGGAAAAGAAACAATTCTAG 57.239 33.333 0.00 0.00 45.19 2.43
5126 6221 6.008875 GCAAATTCACATTAATGAAACACGC 58.991 36.000 22.16 11.42 41.78 5.34
5144 6239 4.654091 AAATACAGCCTATGCGCAAATT 57.346 36.364 17.11 0.00 44.33 1.82
5179 6274 2.109425 ACACGGGAATTTACTCAGCC 57.891 50.000 0.00 0.00 0.00 4.85
5182 6277 4.525487 AGTCAGTACACGGGAATTTACTCA 59.475 41.667 0.00 0.00 0.00 3.41
5272 6367 2.361119 ACGTAAGAACAGTGCAGACAGA 59.639 45.455 0.00 0.00 43.62 3.41
5405 6500 9.669887 ACGGAGGAAGTATTATACTAGTATCTG 57.330 37.037 18.68 8.97 38.26 2.90
5479 6574 6.996282 CCCTCCATACCAAAATATAAGACGTT 59.004 38.462 0.00 0.00 0.00 3.99
5480 6575 6.328148 TCCCTCCATACCAAAATATAAGACGT 59.672 38.462 0.00 0.00 0.00 4.34
5495 6590 4.947388 TGCAACAAAATACTCCCTCCATAC 59.053 41.667 0.00 0.00 0.00 2.39
5509 6604 3.088532 ACTGAACAGGAGTGCAACAAAA 58.911 40.909 6.76 0.00 41.43 2.44
5521 6616 2.290367 TGCATCGAAACAACTGAACAGG 59.710 45.455 6.76 0.00 0.00 4.00
5522 6617 3.607422 TGCATCGAAACAACTGAACAG 57.393 42.857 0.00 0.00 0.00 3.16
5523 6618 3.376859 ACTTGCATCGAAACAACTGAACA 59.623 39.130 0.00 0.00 0.00 3.18
5524 6619 3.952535 ACTTGCATCGAAACAACTGAAC 58.047 40.909 0.00 0.00 0.00 3.18
5525 6620 4.630894 AACTTGCATCGAAACAACTGAA 57.369 36.364 0.00 0.00 0.00 3.02
5526 6621 4.095632 TCAAACTTGCATCGAAACAACTGA 59.904 37.500 0.00 0.00 0.00 3.41
5527 6622 4.350346 TCAAACTTGCATCGAAACAACTG 58.650 39.130 0.00 0.00 0.00 3.16
5528 6623 4.601019 CTCAAACTTGCATCGAAACAACT 58.399 39.130 0.00 0.00 0.00 3.16
5529 6624 3.180387 GCTCAAACTTGCATCGAAACAAC 59.820 43.478 0.00 0.00 0.00 3.32
5530 6625 3.066621 AGCTCAAACTTGCATCGAAACAA 59.933 39.130 0.00 0.00 0.00 2.83
5531 6626 2.618241 AGCTCAAACTTGCATCGAAACA 59.382 40.909 0.00 0.00 0.00 2.83
5733 6828 1.002624 GTTGATCGGTCTGGGGCAA 60.003 57.895 0.00 0.00 0.00 4.52
5840 6935 6.351033 CCTTCCTAGTAGCAGTTTGTCATGTA 60.351 42.308 0.00 0.00 0.00 2.29
5853 6948 3.629087 TGGACTACACCTTCCTAGTAGC 58.371 50.000 0.00 0.00 38.98 3.58
5854 6949 5.113446 TCTGGACTACACCTTCCTAGTAG 57.887 47.826 0.00 0.00 40.70 2.57
5855 6950 5.044328 ACATCTGGACTACACCTTCCTAGTA 60.044 44.000 0.00 0.00 32.55 1.82
5924 7044 1.829533 CTGCACCACAAGCCACCTT 60.830 57.895 0.00 0.00 0.00 3.50
5930 7050 0.523072 CACATACCTGCACCACAAGC 59.477 55.000 0.00 0.00 0.00 4.01
6102 7222 0.912486 AAATGGTTCTCCGGAGAGGG 59.088 55.000 31.81 8.27 40.83 4.30
6103 7223 2.789409 AAAATGGTTCTCCGGAGAGG 57.211 50.000 31.81 8.68 40.83 3.69
6107 7227 3.963129 AGCATAAAAATGGTTCTCCGGA 58.037 40.909 2.93 2.93 36.30 5.14
6195 7323 8.234546 GGTACAAACTCAAATTACATCGTCAAT 58.765 33.333 0.00 0.00 0.00 2.57
6216 7344 1.578897 TGCTGAGGCCAATAGGTACA 58.421 50.000 5.01 0.00 37.74 2.90
6223 7351 2.307768 CAGAATCATGCTGAGGCCAAT 58.692 47.619 5.01 0.00 35.39 3.16
6232 7360 0.745845 GGTCGGTGCAGAATCATGCT 60.746 55.000 0.00 0.00 46.63 3.79
6245 7373 4.443034 GCAAAATCTAGAGGTATGGTCGGT 60.443 45.833 0.00 0.00 0.00 4.69
6252 7380 5.653255 ACCATGGCAAAATCTAGAGGTAT 57.347 39.130 13.04 0.00 0.00 2.73
6268 7397 0.882042 GCGAGGTCAGCATACCATGG 60.882 60.000 11.19 11.19 42.40 3.66
6277 7406 1.986575 GAATTGCCTGCGAGGTCAGC 61.987 60.000 4.45 0.00 37.80 4.26
6278 7407 0.674581 TGAATTGCCTGCGAGGTCAG 60.675 55.000 4.45 0.00 37.80 3.51
6279 7408 0.035152 ATGAATTGCCTGCGAGGTCA 60.035 50.000 4.45 0.00 37.80 4.02
6280 7409 0.659957 GATGAATTGCCTGCGAGGTC 59.340 55.000 4.45 0.00 37.80 3.85
6281 7410 0.035152 TGATGAATTGCCTGCGAGGT 60.035 50.000 4.45 0.00 37.80 3.85
6282 7411 1.065102 CTTGATGAATTGCCTGCGAGG 59.935 52.381 0.00 0.00 38.80 4.63
6283 7412 1.065102 CCTTGATGAATTGCCTGCGAG 59.935 52.381 0.00 0.00 0.00 5.03
6284 7413 1.097232 CCTTGATGAATTGCCTGCGA 58.903 50.000 0.00 0.00 0.00 5.10
6285 7414 0.101759 CCCTTGATGAATTGCCTGCG 59.898 55.000 0.00 0.00 0.00 5.18
6286 7415 1.477553 TCCCTTGATGAATTGCCTGC 58.522 50.000 0.00 0.00 0.00 4.85
6287 7416 3.118884 CCTTTCCCTTGATGAATTGCCTG 60.119 47.826 0.00 0.00 0.00 4.85
6288 7417 3.102204 CCTTTCCCTTGATGAATTGCCT 58.898 45.455 0.00 0.00 0.00 4.75
6289 7418 3.099141 TCCTTTCCCTTGATGAATTGCC 58.901 45.455 0.00 0.00 0.00 4.52
6572 7726 7.628769 AAAATTTCAGTTGAATGTGGCTTTT 57.371 28.000 0.00 0.00 33.54 2.27
6863 8017 6.239036 GGACCCTCAAAATAAATACTGATGGC 60.239 42.308 0.00 0.00 29.47 4.40
7033 8187 2.163010 GTGTGGTGGCATGAGAGAAATG 59.837 50.000 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.