Multiple sequence alignment - TraesCS7B01G167600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G167600 chr7B 100.000 3862 0 0 1 3862 232756532 232760393 0.000000e+00 7132.0
1 TraesCS7B01G167600 chr7D 91.618 2911 149 41 265 3112 254990999 254993877 0.000000e+00 3936.0
2 TraesCS7B01G167600 chr7D 91.289 551 30 7 3102 3640 254993897 254994441 0.000000e+00 736.0
3 TraesCS7B01G167600 chr7D 90.749 227 17 2 3637 3862 254994488 254994711 2.260000e-77 300.0
4 TraesCS7B01G167600 chr7A 91.535 1583 110 10 379 1942 274322229 274323806 0.000000e+00 2159.0
5 TraesCS7B01G167600 chr7A 93.700 1000 43 13 1941 2931 274324150 274325138 0.000000e+00 1480.0
6 TraesCS7B01G167600 chr7A 89.809 628 46 11 2920 3535 274385744 274386365 0.000000e+00 789.0
7 TraesCS7B01G167600 chr4B 97.143 35 0 1 2812 2845 634457759 634457725 1.500000e-04 58.4
8 TraesCS7B01G167600 chr1B 96.970 33 0 1 2812 2843 277451124 277451092 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G167600 chr7B 232756532 232760393 3861 False 7132.000000 7132 100.000000 1 3862 1 chr7B.!!$F1 3861
1 TraesCS7B01G167600 chr7D 254990999 254994711 3712 False 1657.333333 3936 91.218667 265 3862 3 chr7D.!!$F1 3597
2 TraesCS7B01G167600 chr7A 274322229 274325138 2909 False 1819.500000 2159 92.617500 379 2931 2 chr7A.!!$F2 2552
3 TraesCS7B01G167600 chr7A 274385744 274386365 621 False 789.000000 789 89.809000 2920 3535 1 chr7A.!!$F1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 207 0.031043 TGTGTAACCCGAGTCACGTG 59.969 55.0 9.94 9.94 35.75 4.49 F
260 261 0.034089 ATGCAGCCTACCAAACCTCC 60.034 55.0 0.00 0.00 0.00 4.30 F
505 540 0.036388 AGCCAACGGTGACACTATGG 60.036 55.0 0.00 15.88 0.00 2.74 F
1804 1870 0.596577 TGGAACGACTCAGAACCTCG 59.403 55.0 0.00 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1389 1443 0.108396 TGATACGGTCGGTCGGGATA 59.892 55.000 3.69 0.0 0.0 2.59 R
2102 2522 0.954452 GGAAACTGGAGCAACACAGG 59.046 55.000 0.00 0.0 39.0 4.00 R
2448 2874 1.992557 TCTTTAGGGACCAAGCCATGT 59.007 47.619 0.00 0.0 0.0 3.21 R
2915 3344 0.035056 AAGGAAGACGCTGGGGAATG 60.035 55.000 0.00 0.0 0.0 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.418356 GTCGGTGTGGGACGTGAA 59.582 61.111 0.00 0.00 0.00 3.18
18 19 1.952635 GTCGGTGTGGGACGTGAAC 60.953 63.158 0.00 0.00 0.00 3.18
19 20 2.107343 CGGTGTGGGACGTGAACA 59.893 61.111 0.00 0.00 0.00 3.18
20 21 1.301401 CGGTGTGGGACGTGAACAT 60.301 57.895 0.00 0.00 0.00 2.71
21 22 0.882927 CGGTGTGGGACGTGAACATT 60.883 55.000 0.00 0.00 0.00 2.71
22 23 1.314730 GGTGTGGGACGTGAACATTT 58.685 50.000 0.00 0.00 0.00 2.32
23 24 1.679153 GGTGTGGGACGTGAACATTTT 59.321 47.619 0.00 0.00 0.00 1.82
24 25 2.542824 GGTGTGGGACGTGAACATTTTG 60.543 50.000 0.00 0.00 0.00 2.44
25 26 2.356382 GTGTGGGACGTGAACATTTTGA 59.644 45.455 0.00 0.00 0.00 2.69
26 27 3.004315 GTGTGGGACGTGAACATTTTGAT 59.996 43.478 0.00 0.00 0.00 2.57
27 28 3.252215 TGTGGGACGTGAACATTTTGATC 59.748 43.478 0.00 0.00 0.00 2.92
28 29 2.817258 TGGGACGTGAACATTTTGATCC 59.183 45.455 0.00 0.00 0.00 3.36
29 30 3.081804 GGGACGTGAACATTTTGATCCT 58.918 45.455 0.00 0.00 0.00 3.24
30 31 3.506067 GGGACGTGAACATTTTGATCCTT 59.494 43.478 0.00 0.00 0.00 3.36
31 32 4.022329 GGGACGTGAACATTTTGATCCTTT 60.022 41.667 0.00 0.00 0.00 3.11
32 33 5.154222 GGACGTGAACATTTTGATCCTTTC 58.846 41.667 0.00 0.00 0.00 2.62
33 34 5.121221 ACGTGAACATTTTGATCCTTTCC 57.879 39.130 0.00 0.00 0.00 3.13
34 35 4.827284 ACGTGAACATTTTGATCCTTTCCT 59.173 37.500 0.00 0.00 0.00 3.36
35 36 5.301805 ACGTGAACATTTTGATCCTTTCCTT 59.698 36.000 0.00 0.00 0.00 3.36
36 37 6.488683 ACGTGAACATTTTGATCCTTTCCTTA 59.511 34.615 0.00 0.00 0.00 2.69
37 38 7.013846 ACGTGAACATTTTGATCCTTTCCTTAA 59.986 33.333 0.00 0.00 0.00 1.85
38 39 7.538678 CGTGAACATTTTGATCCTTTCCTTAAG 59.461 37.037 0.00 0.00 0.00 1.85
39 40 8.360390 GTGAACATTTTGATCCTTTCCTTAAGT 58.640 33.333 0.97 0.00 31.56 2.24
40 41 8.576442 TGAACATTTTGATCCTTTCCTTAAGTC 58.424 33.333 0.97 0.00 31.56 3.01
41 42 7.145932 ACATTTTGATCCTTTCCTTAAGTCG 57.854 36.000 0.97 0.00 31.56 4.18
42 43 6.151144 ACATTTTGATCCTTTCCTTAAGTCGG 59.849 38.462 0.97 0.00 31.56 4.79
43 44 4.903045 TTGATCCTTTCCTTAAGTCGGT 57.097 40.909 0.97 0.00 31.56 4.69
44 45 4.903045 TGATCCTTTCCTTAAGTCGGTT 57.097 40.909 0.97 0.00 31.56 4.44
45 46 6.363167 TTGATCCTTTCCTTAAGTCGGTTA 57.637 37.500 0.97 0.00 31.56 2.85
46 47 6.555463 TGATCCTTTCCTTAAGTCGGTTAT 57.445 37.500 0.97 0.00 31.56 1.89
47 48 7.664552 TGATCCTTTCCTTAAGTCGGTTATA 57.335 36.000 0.97 0.00 31.56 0.98
48 49 8.258850 TGATCCTTTCCTTAAGTCGGTTATAT 57.741 34.615 0.97 0.00 31.56 0.86
49 50 8.711170 TGATCCTTTCCTTAAGTCGGTTATATT 58.289 33.333 0.97 0.00 31.56 1.28
50 51 9.557061 GATCCTTTCCTTAAGTCGGTTATATTT 57.443 33.333 0.97 0.00 31.56 1.40
51 52 9.916360 ATCCTTTCCTTAAGTCGGTTATATTTT 57.084 29.630 0.97 0.00 31.56 1.82
52 53 9.387257 TCCTTTCCTTAAGTCGGTTATATTTTC 57.613 33.333 0.97 0.00 31.56 2.29
53 54 9.169592 CCTTTCCTTAAGTCGGTTATATTTTCA 57.830 33.333 0.97 0.00 31.56 2.69
56 57 9.675464 TTCCTTAAGTCGGTTATATTTTCATGT 57.325 29.630 0.97 0.00 0.00 3.21
77 78 5.647589 TGTAAATTTGTTGTTTACACCGCA 58.352 33.333 0.00 0.00 43.36 5.69
78 79 6.097356 TGTAAATTTGTTGTTTACACCGCAA 58.903 32.000 0.00 0.00 43.36 4.85
79 80 6.588756 TGTAAATTTGTTGTTTACACCGCAAA 59.411 30.769 0.00 8.08 43.36 3.68
80 81 5.710613 AATTTGTTGTTTACACCGCAAAG 57.289 34.783 10.19 0.00 36.21 2.77
81 82 4.436242 TTTGTTGTTTACACCGCAAAGA 57.564 36.364 0.00 0.00 36.21 2.52
82 83 3.408288 TGTTGTTTACACCGCAAAGAC 57.592 42.857 0.00 0.00 0.00 3.01
83 84 2.223066 TGTTGTTTACACCGCAAAGACG 60.223 45.455 0.00 0.00 0.00 4.18
84 85 0.305313 TGTTTACACCGCAAAGACGC 59.695 50.000 0.00 0.00 0.00 5.19
92 93 4.496898 GCAAAGACGCGTGTGAAG 57.503 55.556 20.70 7.63 0.00 3.02
93 94 1.641677 GCAAAGACGCGTGTGAAGT 59.358 52.632 20.70 0.00 0.00 3.01
94 95 0.856641 GCAAAGACGCGTGTGAAGTA 59.143 50.000 20.70 0.00 0.00 2.24
95 96 1.396815 GCAAAGACGCGTGTGAAGTAC 60.397 52.381 20.70 0.00 0.00 2.73
96 97 1.855978 CAAAGACGCGTGTGAAGTACA 59.144 47.619 20.70 0.00 36.82 2.90
110 111 6.757026 GTGAAGTACACTTGTCTTTCTCTC 57.243 41.667 0.00 0.00 45.13 3.20
111 112 5.692654 GTGAAGTACACTTGTCTTTCTCTCC 59.307 44.000 0.00 0.00 45.13 3.71
112 113 4.875561 AGTACACTTGTCTTTCTCTCCC 57.124 45.455 0.00 0.00 0.00 4.30
113 114 4.484912 AGTACACTTGTCTTTCTCTCCCT 58.515 43.478 0.00 0.00 0.00 4.20
114 115 4.902448 AGTACACTTGTCTTTCTCTCCCTT 59.098 41.667 0.00 0.00 0.00 3.95
115 116 4.344359 ACACTTGTCTTTCTCTCCCTTC 57.656 45.455 0.00 0.00 0.00 3.46
116 117 3.711704 ACACTTGTCTTTCTCTCCCTTCA 59.288 43.478 0.00 0.00 0.00 3.02
117 118 4.061596 CACTTGTCTTTCTCTCCCTTCAC 58.938 47.826 0.00 0.00 0.00 3.18
118 119 3.970640 ACTTGTCTTTCTCTCCCTTCACT 59.029 43.478 0.00 0.00 0.00 3.41
119 120 4.410555 ACTTGTCTTTCTCTCCCTTCACTT 59.589 41.667 0.00 0.00 0.00 3.16
120 121 5.104318 ACTTGTCTTTCTCTCCCTTCACTTT 60.104 40.000 0.00 0.00 0.00 2.66
121 122 6.099845 ACTTGTCTTTCTCTCCCTTCACTTTA 59.900 38.462 0.00 0.00 0.00 1.85
122 123 5.855045 TGTCTTTCTCTCCCTTCACTTTAC 58.145 41.667 0.00 0.00 0.00 2.01
123 124 5.365605 TGTCTTTCTCTCCCTTCACTTTACA 59.634 40.000 0.00 0.00 0.00 2.41
124 125 5.929415 GTCTTTCTCTCCCTTCACTTTACAG 59.071 44.000 0.00 0.00 0.00 2.74
125 126 4.891992 TTCTCTCCCTTCACTTTACAGG 57.108 45.455 0.00 0.00 0.00 4.00
126 127 3.858135 TCTCTCCCTTCACTTTACAGGT 58.142 45.455 0.00 0.00 0.00 4.00
127 128 3.833070 TCTCTCCCTTCACTTTACAGGTC 59.167 47.826 0.00 0.00 0.00 3.85
128 129 3.835395 CTCTCCCTTCACTTTACAGGTCT 59.165 47.826 0.00 0.00 0.00 3.85
129 130 3.833070 TCTCCCTTCACTTTACAGGTCTC 59.167 47.826 0.00 0.00 0.00 3.36
130 131 3.578716 CTCCCTTCACTTTACAGGTCTCA 59.421 47.826 0.00 0.00 0.00 3.27
131 132 3.971305 TCCCTTCACTTTACAGGTCTCAA 59.029 43.478 0.00 0.00 0.00 3.02
132 133 4.597507 TCCCTTCACTTTACAGGTCTCAAT 59.402 41.667 0.00 0.00 0.00 2.57
133 134 4.938226 CCCTTCACTTTACAGGTCTCAATC 59.062 45.833 0.00 0.00 0.00 2.67
134 135 5.280215 CCCTTCACTTTACAGGTCTCAATCT 60.280 44.000 0.00 0.00 0.00 2.40
135 136 5.641209 CCTTCACTTTACAGGTCTCAATCTG 59.359 44.000 0.00 0.00 37.07 2.90
136 137 4.569943 TCACTTTACAGGTCTCAATCTGC 58.430 43.478 0.00 0.00 34.57 4.26
137 138 4.040339 TCACTTTACAGGTCTCAATCTGCA 59.960 41.667 0.00 0.00 34.57 4.41
138 139 4.391216 CACTTTACAGGTCTCAATCTGCAG 59.609 45.833 7.63 7.63 34.57 4.41
139 140 3.616956 TTACAGGTCTCAATCTGCAGG 57.383 47.619 15.13 0.00 34.57 4.85
140 141 1.649321 ACAGGTCTCAATCTGCAGGA 58.351 50.000 15.13 2.10 34.57 3.86
141 142 1.277557 ACAGGTCTCAATCTGCAGGAC 59.722 52.381 15.13 12.42 34.57 3.85
142 143 0.908198 AGGTCTCAATCTGCAGGACC 59.092 55.000 23.91 23.91 44.64 4.46
143 144 0.107459 GGTCTCAATCTGCAGGACCC 60.107 60.000 21.91 9.23 40.14 4.46
144 145 0.908198 GTCTCAATCTGCAGGACCCT 59.092 55.000 15.13 0.00 0.00 4.34
145 146 1.280421 GTCTCAATCTGCAGGACCCTT 59.720 52.381 15.13 0.00 0.00 3.95
146 147 1.988107 TCTCAATCTGCAGGACCCTTT 59.012 47.619 15.13 0.00 0.00 3.11
147 148 2.089980 CTCAATCTGCAGGACCCTTTG 58.910 52.381 15.13 8.62 0.00 2.77
148 149 0.529378 CAATCTGCAGGACCCTTTGC 59.471 55.000 15.13 0.00 40.67 3.68
149 150 0.613012 AATCTGCAGGACCCTTTGCC 60.613 55.000 15.13 0.00 39.54 4.52
150 151 2.505364 ATCTGCAGGACCCTTTGCCC 62.505 60.000 15.13 0.00 39.54 5.36
151 152 3.506743 TGCAGGACCCTTTGCCCA 61.507 61.111 2.01 0.00 39.54 5.36
152 153 2.037847 GCAGGACCCTTTGCCCAT 59.962 61.111 0.00 0.00 34.28 4.00
153 154 1.610379 GCAGGACCCTTTGCCCATT 60.610 57.895 0.00 0.00 34.28 3.16
154 155 1.607801 GCAGGACCCTTTGCCCATTC 61.608 60.000 0.00 0.00 34.28 2.67
155 156 0.972471 CAGGACCCTTTGCCCATTCC 60.972 60.000 0.00 0.00 0.00 3.01
156 157 1.685765 GGACCCTTTGCCCATTCCC 60.686 63.158 0.00 0.00 0.00 3.97
157 158 2.037208 ACCCTTTGCCCATTCCCG 59.963 61.111 0.00 0.00 0.00 5.14
158 159 2.037208 CCCTTTGCCCATTCCCGT 59.963 61.111 0.00 0.00 0.00 5.28
159 160 2.052104 CCCTTTGCCCATTCCCGTC 61.052 63.158 0.00 0.00 0.00 4.79
160 161 2.406616 CCTTTGCCCATTCCCGTCG 61.407 63.158 0.00 0.00 0.00 5.12
161 162 2.360600 TTTGCCCATTCCCGTCGG 60.361 61.111 3.60 3.60 0.00 4.79
162 163 3.198953 TTTGCCCATTCCCGTCGGT 62.199 57.895 11.06 0.00 0.00 4.69
163 164 3.910914 TTGCCCATTCCCGTCGGTG 62.911 63.158 11.06 1.65 0.00 4.94
164 165 4.090588 GCCCATTCCCGTCGGTGA 62.091 66.667 11.06 4.40 0.00 4.02
165 166 2.908015 CCCATTCCCGTCGGTGAT 59.092 61.111 11.06 0.40 0.00 3.06
166 167 1.523711 CCCATTCCCGTCGGTGATG 60.524 63.158 11.06 12.95 0.00 3.07
167 168 1.220749 CCATTCCCGTCGGTGATGT 59.779 57.895 11.06 0.00 0.00 3.06
168 169 0.392461 CCATTCCCGTCGGTGATGTT 60.392 55.000 11.06 0.00 0.00 2.71
169 170 1.006832 CATTCCCGTCGGTGATGTTC 58.993 55.000 11.06 0.00 0.00 3.18
170 171 0.611200 ATTCCCGTCGGTGATGTTCA 59.389 50.000 11.06 0.00 0.00 3.18
171 172 0.320073 TTCCCGTCGGTGATGTTCAC 60.320 55.000 11.06 0.00 46.23 3.18
186 187 4.397481 TGTTCACAACATGATTTTGGCA 57.603 36.364 0.00 0.00 37.11 4.92
187 188 4.958509 TGTTCACAACATGATTTTGGCAT 58.041 34.783 0.00 0.00 37.11 4.40
188 189 4.750598 TGTTCACAACATGATTTTGGCATG 59.249 37.500 0.00 0.00 46.49 4.06
196 197 3.951775 TGATTTTGGCATGTGTAACCC 57.048 42.857 0.00 0.00 34.36 4.11
197 198 2.230025 TGATTTTGGCATGTGTAACCCG 59.770 45.455 0.00 0.00 34.36 5.28
198 199 1.982660 TTTTGGCATGTGTAACCCGA 58.017 45.000 0.00 0.00 34.36 5.14
199 200 1.529226 TTTGGCATGTGTAACCCGAG 58.471 50.000 0.00 0.00 34.36 4.63
200 201 0.398696 TTGGCATGTGTAACCCGAGT 59.601 50.000 0.00 0.00 34.36 4.18
201 202 0.036765 TGGCATGTGTAACCCGAGTC 60.037 55.000 0.00 0.00 34.36 3.36
202 203 0.036765 GGCATGTGTAACCCGAGTCA 60.037 55.000 0.00 0.00 34.36 3.41
203 204 1.076332 GCATGTGTAACCCGAGTCAC 58.924 55.000 0.00 0.00 34.36 3.67
204 205 1.346365 CATGTGTAACCCGAGTCACG 58.654 55.000 0.00 0.00 36.82 4.35
205 206 0.963962 ATGTGTAACCCGAGTCACGT 59.036 50.000 0.00 0.00 35.75 4.49
206 207 0.031043 TGTGTAACCCGAGTCACGTG 59.969 55.000 9.94 9.94 35.75 4.49
207 208 1.007038 TGTAACCCGAGTCACGTGC 60.007 57.895 11.67 6.26 40.78 5.34
208 209 1.288127 GTAACCCGAGTCACGTGCT 59.712 57.895 11.67 11.56 40.78 4.40
209 210 1.007336 GTAACCCGAGTCACGTGCTG 61.007 60.000 11.67 6.57 40.78 4.41
210 211 2.758770 TAACCCGAGTCACGTGCTGC 62.759 60.000 11.67 3.50 40.78 5.25
211 212 4.363990 CCCGAGTCACGTGCTGCT 62.364 66.667 11.67 8.75 40.78 4.24
212 213 2.807045 CCGAGTCACGTGCTGCTC 60.807 66.667 11.67 16.01 40.78 4.26
213 214 2.050077 CGAGTCACGTGCTGCTCA 60.050 61.111 23.78 2.56 37.22 4.26
214 215 2.085262 CGAGTCACGTGCTGCTCAG 61.085 63.158 23.78 16.51 37.22 3.35
224 225 3.499050 CTGCTCAGCCACAGATGC 58.501 61.111 0.00 0.00 35.90 3.91
225 226 1.376812 CTGCTCAGCCACAGATGCA 60.377 57.895 0.00 0.00 35.90 3.96
226 227 1.369839 CTGCTCAGCCACAGATGCAG 61.370 60.000 0.00 0.00 41.15 4.41
227 228 2.113433 GCTCAGCCACAGATGCAGG 61.113 63.158 0.00 0.00 0.00 4.85
228 229 1.451567 CTCAGCCACAGATGCAGGG 60.452 63.158 0.00 0.00 0.00 4.45
229 230 1.907222 CTCAGCCACAGATGCAGGGA 61.907 60.000 0.00 0.00 0.00 4.20
230 231 1.451567 CAGCCACAGATGCAGGGAG 60.452 63.158 0.00 0.00 0.00 4.30
231 232 2.124403 GCCACAGATGCAGGGAGG 60.124 66.667 0.00 0.00 0.00 4.30
232 233 2.673200 GCCACAGATGCAGGGAGGA 61.673 63.158 0.00 0.00 0.00 3.71
233 234 1.222936 CCACAGATGCAGGGAGGAC 59.777 63.158 0.00 0.00 0.00 3.85
234 235 1.556373 CCACAGATGCAGGGAGGACA 61.556 60.000 0.00 0.00 0.00 4.02
235 236 0.325933 CACAGATGCAGGGAGGACAA 59.674 55.000 0.00 0.00 0.00 3.18
236 237 1.067295 ACAGATGCAGGGAGGACAAA 58.933 50.000 0.00 0.00 0.00 2.83
237 238 1.425066 ACAGATGCAGGGAGGACAAAA 59.575 47.619 0.00 0.00 0.00 2.44
238 239 2.158475 ACAGATGCAGGGAGGACAAAAA 60.158 45.455 0.00 0.00 0.00 1.94
239 240 2.229784 CAGATGCAGGGAGGACAAAAAC 59.770 50.000 0.00 0.00 0.00 2.43
240 241 2.158475 AGATGCAGGGAGGACAAAAACA 60.158 45.455 0.00 0.00 0.00 2.83
241 242 2.151502 TGCAGGGAGGACAAAAACAA 57.848 45.000 0.00 0.00 0.00 2.83
242 243 2.676748 TGCAGGGAGGACAAAAACAAT 58.323 42.857 0.00 0.00 0.00 2.71
243 244 2.364970 TGCAGGGAGGACAAAAACAATG 59.635 45.455 0.00 0.00 0.00 2.82
244 245 2.867647 GCAGGGAGGACAAAAACAATGC 60.868 50.000 0.00 0.00 0.00 3.56
245 246 2.364970 CAGGGAGGACAAAAACAATGCA 59.635 45.455 0.00 0.00 0.00 3.96
246 247 2.629617 AGGGAGGACAAAAACAATGCAG 59.370 45.455 0.00 0.00 0.00 4.41
247 248 2.407090 GGAGGACAAAAACAATGCAGC 58.593 47.619 0.00 0.00 0.00 5.25
248 249 2.407090 GAGGACAAAAACAATGCAGCC 58.593 47.619 0.00 0.00 0.00 4.85
249 250 2.036346 GAGGACAAAAACAATGCAGCCT 59.964 45.455 0.00 0.00 0.00 4.58
250 251 3.230134 AGGACAAAAACAATGCAGCCTA 58.770 40.909 0.00 0.00 0.00 3.93
251 252 3.005791 AGGACAAAAACAATGCAGCCTAC 59.994 43.478 0.00 0.00 0.00 3.18
252 253 3.317150 GACAAAAACAATGCAGCCTACC 58.683 45.455 0.00 0.00 0.00 3.18
253 254 2.697751 ACAAAAACAATGCAGCCTACCA 59.302 40.909 0.00 0.00 0.00 3.25
254 255 3.133721 ACAAAAACAATGCAGCCTACCAA 59.866 39.130 0.00 0.00 0.00 3.67
255 256 4.125703 CAAAAACAATGCAGCCTACCAAA 58.874 39.130 0.00 0.00 0.00 3.28
256 257 3.385193 AAACAATGCAGCCTACCAAAC 57.615 42.857 0.00 0.00 0.00 2.93
257 258 1.256812 ACAATGCAGCCTACCAAACC 58.743 50.000 0.00 0.00 0.00 3.27
258 259 1.203050 ACAATGCAGCCTACCAAACCT 60.203 47.619 0.00 0.00 0.00 3.50
259 260 1.474077 CAATGCAGCCTACCAAACCTC 59.526 52.381 0.00 0.00 0.00 3.85
260 261 0.034089 ATGCAGCCTACCAAACCTCC 60.034 55.000 0.00 0.00 0.00 4.30
261 262 1.378762 GCAGCCTACCAAACCTCCA 59.621 57.895 0.00 0.00 0.00 3.86
262 263 0.678048 GCAGCCTACCAAACCTCCAG 60.678 60.000 0.00 0.00 0.00 3.86
263 264 0.984230 CAGCCTACCAAACCTCCAGA 59.016 55.000 0.00 0.00 0.00 3.86
270 271 1.151413 ACCAAACCTCCAGACCTCCTA 59.849 52.381 0.00 0.00 0.00 2.94
279 280 2.032620 CCAGACCTCCTATACAACGCT 58.967 52.381 0.00 0.00 0.00 5.07
290 294 6.052360 TCCTATACAACGCTTTATGCATCAA 58.948 36.000 0.19 0.00 43.06 2.57
302 306 3.579534 ATGCATCAAGGAAGCAGAGAT 57.420 42.857 0.00 0.00 39.56 2.75
349 353 2.256461 CCAGCAAGCAAACCGAGC 59.744 61.111 0.00 0.00 0.00 5.03
350 354 2.554636 CCAGCAAGCAAACCGAGCA 61.555 57.895 0.00 0.00 0.00 4.26
352 356 1.526917 AGCAAGCAAACCGAGCACT 60.527 52.632 0.00 0.00 0.00 4.40
354 358 1.370900 CAAGCAAACCGAGCACTGC 60.371 57.895 0.00 0.00 34.96 4.40
367 390 3.615811 ACTGCTCCCTCCCCCTCA 61.616 66.667 0.00 0.00 0.00 3.86
383 413 1.421646 CCTCACTTGGTTCTCAGGGTT 59.578 52.381 0.00 0.00 0.00 4.11
393 423 0.679505 TCTCAGGGTTGACAACTCGG 59.320 55.000 17.52 14.60 36.83 4.63
423 453 0.528466 GCTGATCGCCGTCAGATTGA 60.528 55.000 17.01 0.00 46.77 2.57
426 456 2.473816 TGATCGCCGTCAGATTGAATC 58.526 47.619 0.00 0.00 0.00 2.52
436 471 6.159988 CCGTCAGATTGAATCCCTACTATTC 58.840 44.000 0.75 0.00 34.55 1.75
470 505 3.244561 ACAAATTGTGACCTGGATCTCGT 60.245 43.478 0.00 0.00 0.00 4.18
480 515 6.010219 TGACCTGGATCTCGTGAATATATCA 58.990 40.000 0.00 0.00 35.05 2.15
494 529 5.473162 TGAATATATCAATTCCAGCCAACGG 59.527 40.000 0.00 0.00 35.40 4.44
505 540 0.036388 AGCCAACGGTGACACTATGG 60.036 55.000 0.00 15.88 0.00 2.74
511 546 1.337823 ACGGTGACACTATGGCTTCAC 60.338 52.381 5.39 2.90 38.11 3.18
515 550 3.557054 GGTGACACTATGGCTTCACTTCA 60.557 47.826 5.39 0.00 38.73 3.02
564 602 0.620556 TTGGTGAGGGCCATTCTCTC 59.379 55.000 6.18 1.36 38.48 3.20
566 604 1.008327 TGGTGAGGGCCATTCTCTCTA 59.992 52.381 6.18 0.00 32.81 2.43
573 611 7.232534 GGTGAGGGCCATTCTCTCTATATATAG 59.767 44.444 12.84 12.84 32.78 1.31
626 667 2.943033 GGGCAACTGCGTAGATTTATGT 59.057 45.455 7.78 0.00 43.26 2.29
633 674 8.708742 GCAACTGCGTAGATTTATGTAATATCA 58.291 33.333 7.78 0.00 0.00 2.15
635 676 9.982651 AACTGCGTAGATTTATGTAATATCAGT 57.017 29.630 7.78 0.00 0.00 3.41
636 677 9.982651 ACTGCGTAGATTTATGTAATATCAGTT 57.017 29.630 7.78 0.00 0.00 3.16
638 679 9.974980 TGCGTAGATTTATGTAATATCAGTTGA 57.025 29.630 0.00 0.00 0.00 3.18
790 842 9.124807 GTGAAAAAGTTCGTAAATTTGATAGGG 57.875 33.333 0.00 0.00 36.46 3.53
793 845 5.703730 AGTTCGTAAATTTGATAGGGGGA 57.296 39.130 0.00 0.00 0.00 4.81
808 860 1.637035 GGGGGAGTTTGGGCTTACTAA 59.363 52.381 0.00 0.00 0.00 2.24
846 900 1.078497 TAGTGCAGGGCCGAATGTG 60.078 57.895 0.00 0.00 0.00 3.21
847 901 1.836999 TAGTGCAGGGCCGAATGTGT 61.837 55.000 0.00 0.00 0.00 3.72
857 911 3.389221 GGCCGAATGTGTCACAAAAATT 58.611 40.909 10.28 0.00 0.00 1.82
881 935 4.556233 TGCAGAAAATCTATACGATCGGG 58.444 43.478 20.98 6.68 0.00 5.14
950 1004 2.443394 GCCATCCATCTCCGGACCA 61.443 63.158 0.00 0.00 38.07 4.02
976 1030 0.823460 CCACAGCCGCCCATAATTTT 59.177 50.000 0.00 0.00 0.00 1.82
978 1032 1.204467 CACAGCCGCCCATAATTTTGT 59.796 47.619 0.00 0.00 0.00 2.83
980 1034 1.476085 CAGCCGCCCATAATTTTGTCA 59.524 47.619 0.00 0.00 0.00 3.58
981 1035 1.476488 AGCCGCCCATAATTTTGTCAC 59.524 47.619 0.00 0.00 0.00 3.67
1189 1243 3.308705 GGGTTGGTCGAGTCCGGT 61.309 66.667 0.00 0.00 36.24 5.28
1306 1360 2.752238 CACCTCTCCGCGGAGTCT 60.752 66.667 44.61 28.96 42.49 3.24
1646 1712 5.672819 GCTGATTTCATTGCCATCTTTTTGC 60.673 40.000 0.00 0.00 0.00 3.68
1691 1757 1.509644 TTGCTCTGCGTTTGCTCCTG 61.510 55.000 0.00 0.00 43.34 3.86
1804 1870 0.596577 TGGAACGACTCAGAACCTCG 59.403 55.000 0.00 0.00 0.00 4.63
1960 2380 6.870439 GCTGATCATATGCTAGTTACATGTGA 59.130 38.462 9.11 9.53 45.70 3.58
2079 2499 1.535462 CGTGGAATCACTTCAACCACC 59.465 52.381 0.00 0.00 45.36 4.61
2100 2520 3.585862 CGATATGCCGGTAAATGCTACT 58.414 45.455 1.90 0.00 0.00 2.57
2101 2521 4.381185 CCGATATGCCGGTAAATGCTACTA 60.381 45.833 1.90 0.00 44.23 1.82
2102 2522 4.561606 CGATATGCCGGTAAATGCTACTAC 59.438 45.833 1.90 0.00 0.00 2.73
2123 2543 1.605710 CTGTGTTGCTCCAGTTTCCAG 59.394 52.381 0.00 0.00 0.00 3.86
2128 2548 2.550180 GTTGCTCCAGTTTCCAGTCTTC 59.450 50.000 0.00 0.00 0.00 2.87
2129 2549 1.072331 TGCTCCAGTTTCCAGTCTTCC 59.928 52.381 0.00 0.00 0.00 3.46
2134 2554 3.971305 TCCAGTTTCCAGTCTTCCTGTTA 59.029 43.478 0.00 0.00 39.74 2.41
2142 2562 9.010029 GTTTCCAGTCTTCCTGTTAATCAATTA 57.990 33.333 0.00 0.00 39.74 1.40
2155 2578 8.588290 TGTTAATCAATTAGCCAAAGTACCAT 57.412 30.769 0.00 0.00 0.00 3.55
2184 2607 5.094134 GCAGTTACCGTCTTAGTCTTACTG 58.906 45.833 0.00 0.00 34.97 2.74
2208 2631 1.099295 GCATGCATGTCTGGCTGCTA 61.099 55.000 26.79 0.00 39.16 3.49
2213 2636 2.171237 TGCATGTCTGGCTGCTAACTAT 59.829 45.455 0.00 0.00 39.16 2.12
2282 2705 2.992543 GCTTAGCAGCTCATATCCTTCG 59.007 50.000 0.00 0.00 43.51 3.79
2623 3049 2.284699 ACCTGGGCTAGCTCCGTT 60.285 61.111 13.26 0.00 0.00 4.44
2661 3087 1.245732 GATACGGTGATAGGGCTCGT 58.754 55.000 0.00 0.00 37.78 4.18
2662 3088 1.199558 GATACGGTGATAGGGCTCGTC 59.800 57.143 0.00 0.00 35.60 4.20
2709 3135 1.439679 GCTGCCGCCCTACATATAAC 58.560 55.000 0.00 0.00 0.00 1.89
2711 3137 1.000506 CTGCCGCCCTACATATAACGT 59.999 52.381 0.00 0.00 0.00 3.99
2772 3198 0.531090 TAACCGTGCACGCTCTTTGT 60.531 50.000 33.17 21.00 38.18 2.83
2915 3344 3.608073 CAGTTTCGAATTTGAAATCGCCC 59.392 43.478 21.07 9.99 39.80 6.13
2958 3387 2.124942 CGCCCCAGCTTCTTCCTC 60.125 66.667 0.00 0.00 36.60 3.71
3065 3494 6.732896 TTTTTGAGAGAGAGAAGTACCTGT 57.267 37.500 0.00 0.00 0.00 4.00
3090 3519 1.055849 TCTGTGAGCAAAGCCCACTA 58.944 50.000 5.29 0.00 0.00 2.74
3112 3541 1.450161 CGTTTCATTTTCGGCGTTTGG 59.550 47.619 6.85 0.00 0.00 3.28
3153 3612 0.508641 CTGTCCACTTGCGTCTTTCG 59.491 55.000 0.00 0.00 43.12 3.46
3189 3648 1.133606 GCCCATTTCCCCCTCGATTTA 60.134 52.381 0.00 0.00 0.00 1.40
3190 3649 2.688515 GCCCATTTCCCCCTCGATTTAA 60.689 50.000 0.00 0.00 0.00 1.52
3191 3650 3.637769 CCCATTTCCCCCTCGATTTAAA 58.362 45.455 0.00 0.00 0.00 1.52
3192 3651 4.027437 CCCATTTCCCCCTCGATTTAAAA 58.973 43.478 0.00 0.00 0.00 1.52
3228 3688 5.186215 TCACATAGACACGAATTAACCAGGA 59.814 40.000 0.00 0.00 0.00 3.86
3361 3822 0.243907 GGAAGGCGCGCAGAGATATA 59.756 55.000 34.42 0.00 0.00 0.86
3460 3934 2.946990 GGATGTACCCAAAACATACCGG 59.053 50.000 0.00 0.00 37.69 5.28
3461 3935 3.613030 GATGTACCCAAAACATACCGGT 58.387 45.455 13.98 13.98 37.69 5.28
3462 3936 2.780714 TGTACCCAAAACATACCGGTG 58.219 47.619 19.93 3.36 0.00 4.94
3518 3992 2.547855 GGGGTGTTGTGAAAGGAAATGC 60.548 50.000 0.00 0.00 0.00 3.56
3519 3993 2.365293 GGGTGTTGTGAAAGGAAATGCT 59.635 45.455 0.00 0.00 0.00 3.79
3527 4001 3.760684 GTGAAAGGAAATGCTGATGGAGT 59.239 43.478 0.00 0.00 0.00 3.85
3609 4083 3.181477 TGTTTTTGGGTGCATCAGTTCTG 60.181 43.478 0.00 0.00 0.00 3.02
3617 4091 0.610232 GCATCAGTTCTGGCCTTGGT 60.610 55.000 3.32 0.00 0.00 3.67
3619 4093 1.542915 CATCAGTTCTGGCCTTGGTTG 59.457 52.381 3.32 0.00 0.00 3.77
3647 4171 6.793492 GATGGAACCATCTACTATTGAAGC 57.207 41.667 22.07 0.00 46.67 3.86
3732 4256 4.619863 GCTTCGGATTGTTCTGGTGTAGTA 60.620 45.833 0.00 0.00 0.00 1.82
3733 4257 5.471556 TTCGGATTGTTCTGGTGTAGTAA 57.528 39.130 0.00 0.00 0.00 2.24
3738 4263 5.106277 GGATTGTTCTGGTGTAGTAAAAGCC 60.106 44.000 0.00 0.00 0.00 4.35
3740 4265 5.811796 TGTTCTGGTGTAGTAAAAGCCTA 57.188 39.130 0.00 0.00 0.00 3.93
3748 4273 5.046807 GGTGTAGTAAAAGCCTACAGGAAGA 60.047 44.000 0.00 0.00 43.92 2.87
3775 4300 6.152661 TCCCTTGGTGAAAACATAATGATCAC 59.847 38.462 0.00 0.00 39.65 3.06
3778 4303 8.739039 CCTTGGTGAAAACATAATGATCACTAA 58.261 33.333 0.00 0.00 40.12 2.24
3800 4325 5.543507 AAGAGGTTACAGATATGCAGGAG 57.456 43.478 0.00 0.00 0.00 3.69
3813 4338 1.007118 TGCAGGAGTCCATGACTAGGA 59.993 52.381 12.86 0.00 43.53 2.94
3821 4346 5.586643 GGAGTCCATGACTAGGATTGTTTTC 59.413 44.000 3.60 0.00 43.53 2.29
3842 4367 6.373005 TTCAAGTTTGAGGGTAGATCATCA 57.627 37.500 0.00 0.00 38.61 3.07
3843 4368 6.373005 TCAAGTTTGAGGGTAGATCATCAA 57.627 37.500 0.00 0.00 32.50 2.57
3844 4369 6.778821 TCAAGTTTGAGGGTAGATCATCAAA 58.221 36.000 0.00 0.00 38.85 2.69
3849 4374 3.395607 TGAGGGTAGATCATCAAATGGGG 59.604 47.826 0.00 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.952635 GTTCACGTCCCACACCGAC 60.953 63.158 0.00 0.00 0.00 4.79
1 2 1.750341 ATGTTCACGTCCCACACCGA 61.750 55.000 0.00 0.00 0.00 4.69
2 3 0.882927 AATGTTCACGTCCCACACCG 60.883 55.000 0.00 0.00 0.00 4.94
3 4 1.314730 AAATGTTCACGTCCCACACC 58.685 50.000 0.00 0.00 0.00 4.16
4 5 2.356382 TCAAAATGTTCACGTCCCACAC 59.644 45.455 0.00 0.00 0.00 3.82
5 6 2.644676 TCAAAATGTTCACGTCCCACA 58.355 42.857 0.00 0.00 0.00 4.17
6 7 3.365969 GGATCAAAATGTTCACGTCCCAC 60.366 47.826 0.00 0.00 0.00 4.61
7 8 2.817258 GGATCAAAATGTTCACGTCCCA 59.183 45.455 0.00 0.00 0.00 4.37
8 9 3.081804 AGGATCAAAATGTTCACGTCCC 58.918 45.455 0.00 0.00 0.00 4.46
9 10 4.766404 AAGGATCAAAATGTTCACGTCC 57.234 40.909 0.00 0.00 0.00 4.79
10 11 5.048713 AGGAAAGGATCAAAATGTTCACGTC 60.049 40.000 0.00 0.00 0.00 4.34
11 12 4.827284 AGGAAAGGATCAAAATGTTCACGT 59.173 37.500 0.00 0.00 0.00 4.49
12 13 5.376854 AGGAAAGGATCAAAATGTTCACG 57.623 39.130 0.00 0.00 0.00 4.35
13 14 8.360390 ACTTAAGGAAAGGATCAAAATGTTCAC 58.640 33.333 7.53 0.00 39.73 3.18
14 15 8.477419 ACTTAAGGAAAGGATCAAAATGTTCA 57.523 30.769 7.53 0.00 39.73 3.18
15 16 7.750903 CGACTTAAGGAAAGGATCAAAATGTTC 59.249 37.037 7.53 0.00 39.73 3.18
16 17 7.309194 CCGACTTAAGGAAAGGATCAAAATGTT 60.309 37.037 7.53 0.00 39.73 2.71
17 18 6.151144 CCGACTTAAGGAAAGGATCAAAATGT 59.849 38.462 7.53 0.00 39.73 2.71
18 19 6.151144 ACCGACTTAAGGAAAGGATCAAAATG 59.849 38.462 7.53 0.00 39.73 2.32
19 20 6.246163 ACCGACTTAAGGAAAGGATCAAAAT 58.754 36.000 7.53 0.00 39.73 1.82
20 21 5.627135 ACCGACTTAAGGAAAGGATCAAAA 58.373 37.500 7.53 0.00 39.73 2.44
21 22 5.237236 ACCGACTTAAGGAAAGGATCAAA 57.763 39.130 7.53 0.00 39.73 2.69
22 23 4.903045 ACCGACTTAAGGAAAGGATCAA 57.097 40.909 7.53 0.00 39.73 2.57
23 24 4.903045 AACCGACTTAAGGAAAGGATCA 57.097 40.909 7.53 0.00 39.73 2.92
24 25 9.557061 AAATATAACCGACTTAAGGAAAGGATC 57.443 33.333 7.53 0.00 39.73 3.36
25 26 9.916360 AAAATATAACCGACTTAAGGAAAGGAT 57.084 29.630 7.53 2.19 39.73 3.24
26 27 9.387257 GAAAATATAACCGACTTAAGGAAAGGA 57.613 33.333 7.53 0.00 39.73 3.36
27 28 9.169592 TGAAAATATAACCGACTTAAGGAAAGG 57.830 33.333 7.53 6.81 39.73 3.11
30 31 9.675464 ACATGAAAATATAACCGACTTAAGGAA 57.325 29.630 7.53 0.00 0.00 3.36
54 55 5.647589 TGCGGTGTAAACAACAAATTTACA 58.352 33.333 6.29 6.29 45.65 2.41
55 56 6.570690 TTGCGGTGTAAACAACAAATTTAC 57.429 33.333 0.00 0.00 40.63 2.01
56 57 7.009357 GTCTTTGCGGTGTAAACAACAAATTTA 59.991 33.333 0.00 0.00 40.63 1.40
57 58 5.869888 TCTTTGCGGTGTAAACAACAAATTT 59.130 32.000 0.00 0.00 40.63 1.82
58 59 5.289917 GTCTTTGCGGTGTAAACAACAAATT 59.710 36.000 0.00 0.00 40.63 1.82
59 60 4.801516 GTCTTTGCGGTGTAAACAACAAAT 59.198 37.500 0.00 0.00 40.63 2.32
60 61 4.167268 GTCTTTGCGGTGTAAACAACAAA 58.833 39.130 0.00 3.65 40.63 2.83
61 62 3.728268 CGTCTTTGCGGTGTAAACAACAA 60.728 43.478 0.00 0.00 40.63 2.83
62 63 2.223066 CGTCTTTGCGGTGTAAACAACA 60.223 45.455 0.00 0.00 31.75 3.33
63 64 2.368685 CGTCTTTGCGGTGTAAACAAC 58.631 47.619 0.00 0.00 0.00 3.32
64 65 1.268133 GCGTCTTTGCGGTGTAAACAA 60.268 47.619 0.00 0.00 0.00 2.83
65 66 0.305313 GCGTCTTTGCGGTGTAAACA 59.695 50.000 0.00 0.00 0.00 2.83
66 67 3.067132 GCGTCTTTGCGGTGTAAAC 57.933 52.632 0.00 0.00 0.00 2.01
75 76 0.856641 TACTTCACACGCGTCTTTGC 59.143 50.000 9.86 0.00 0.00 3.68
76 77 1.855978 TGTACTTCACACGCGTCTTTG 59.144 47.619 9.86 7.30 30.04 2.77
77 78 2.212869 TGTACTTCACACGCGTCTTT 57.787 45.000 9.86 0.00 30.04 2.52
78 79 3.951115 TGTACTTCACACGCGTCTT 57.049 47.368 9.86 0.00 30.04 3.01
87 88 5.692654 GGAGAGAAAGACAAGTGTACTTCAC 59.307 44.000 0.00 0.00 46.46 3.18
88 89 5.221461 GGGAGAGAAAGACAAGTGTACTTCA 60.221 44.000 0.00 0.00 33.11 3.02
89 90 5.011227 AGGGAGAGAAAGACAAGTGTACTTC 59.989 44.000 0.00 0.00 33.11 3.01
90 91 4.902448 AGGGAGAGAAAGACAAGTGTACTT 59.098 41.667 0.00 0.00 36.45 2.24
91 92 4.484912 AGGGAGAGAAAGACAAGTGTACT 58.515 43.478 0.00 0.00 0.00 2.73
92 93 4.875561 AGGGAGAGAAAGACAAGTGTAC 57.124 45.455 0.00 0.00 0.00 2.90
93 94 4.899457 TGAAGGGAGAGAAAGACAAGTGTA 59.101 41.667 0.00 0.00 0.00 2.90
94 95 3.711704 TGAAGGGAGAGAAAGACAAGTGT 59.288 43.478 0.00 0.00 0.00 3.55
95 96 4.061596 GTGAAGGGAGAGAAAGACAAGTG 58.938 47.826 0.00 0.00 0.00 3.16
96 97 3.970640 AGTGAAGGGAGAGAAAGACAAGT 59.029 43.478 0.00 0.00 0.00 3.16
97 98 4.615588 AGTGAAGGGAGAGAAAGACAAG 57.384 45.455 0.00 0.00 0.00 3.16
98 99 5.373812 AAAGTGAAGGGAGAGAAAGACAA 57.626 39.130 0.00 0.00 0.00 3.18
99 100 5.365605 TGTAAAGTGAAGGGAGAGAAAGACA 59.634 40.000 0.00 0.00 0.00 3.41
100 101 5.855045 TGTAAAGTGAAGGGAGAGAAAGAC 58.145 41.667 0.00 0.00 0.00 3.01
101 102 5.012148 CCTGTAAAGTGAAGGGAGAGAAAGA 59.988 44.000 0.00 0.00 0.00 2.52
102 103 5.221742 ACCTGTAAAGTGAAGGGAGAGAAAG 60.222 44.000 0.00 0.00 35.24 2.62
103 104 4.658901 ACCTGTAAAGTGAAGGGAGAGAAA 59.341 41.667 0.00 0.00 35.24 2.52
104 105 4.232091 ACCTGTAAAGTGAAGGGAGAGAA 58.768 43.478 0.00 0.00 35.24 2.87
105 106 3.833070 GACCTGTAAAGTGAAGGGAGAGA 59.167 47.826 0.00 0.00 35.24 3.10
106 107 3.835395 AGACCTGTAAAGTGAAGGGAGAG 59.165 47.826 0.00 0.00 35.24 3.20
107 108 3.833070 GAGACCTGTAAAGTGAAGGGAGA 59.167 47.826 0.00 0.00 35.24 3.71
108 109 3.578716 TGAGACCTGTAAAGTGAAGGGAG 59.421 47.826 0.00 0.00 35.24 4.30
109 110 3.583228 TGAGACCTGTAAAGTGAAGGGA 58.417 45.455 0.00 0.00 35.24 4.20
110 111 4.351874 TTGAGACCTGTAAAGTGAAGGG 57.648 45.455 0.00 0.00 35.24 3.95
111 112 5.641209 CAGATTGAGACCTGTAAAGTGAAGG 59.359 44.000 0.00 0.00 37.11 3.46
112 113 5.121454 GCAGATTGAGACCTGTAAAGTGAAG 59.879 44.000 0.00 0.00 33.19 3.02
113 114 4.997395 GCAGATTGAGACCTGTAAAGTGAA 59.003 41.667 0.00 0.00 33.19 3.18
114 115 4.040339 TGCAGATTGAGACCTGTAAAGTGA 59.960 41.667 0.00 0.00 33.19 3.41
115 116 4.318332 TGCAGATTGAGACCTGTAAAGTG 58.682 43.478 0.00 0.00 33.19 3.16
116 117 4.564406 CCTGCAGATTGAGACCTGTAAAGT 60.564 45.833 17.39 0.00 33.19 2.66
117 118 3.937706 CCTGCAGATTGAGACCTGTAAAG 59.062 47.826 17.39 0.00 33.19 1.85
118 119 3.582647 TCCTGCAGATTGAGACCTGTAAA 59.417 43.478 17.39 0.00 33.19 2.01
119 120 3.055819 GTCCTGCAGATTGAGACCTGTAA 60.056 47.826 17.39 0.00 33.19 2.41
120 121 2.497675 GTCCTGCAGATTGAGACCTGTA 59.502 50.000 17.39 0.00 33.19 2.74
121 122 1.277557 GTCCTGCAGATTGAGACCTGT 59.722 52.381 17.39 0.00 33.19 4.00
122 123 1.406614 GGTCCTGCAGATTGAGACCTG 60.407 57.143 23.99 2.99 43.04 4.00
123 124 0.908198 GGTCCTGCAGATTGAGACCT 59.092 55.000 23.99 0.00 43.04 3.85
124 125 0.107459 GGGTCCTGCAGATTGAGACC 60.107 60.000 23.50 23.50 45.15 3.85
125 126 0.908198 AGGGTCCTGCAGATTGAGAC 59.092 55.000 17.39 13.24 0.00 3.36
126 127 1.661463 AAGGGTCCTGCAGATTGAGA 58.339 50.000 17.39 0.00 0.00 3.27
127 128 2.089980 CAAAGGGTCCTGCAGATTGAG 58.910 52.381 17.39 0.00 0.00 3.02
128 129 1.887956 GCAAAGGGTCCTGCAGATTGA 60.888 52.381 17.39 0.20 38.48 2.57
129 130 0.529378 GCAAAGGGTCCTGCAGATTG 59.471 55.000 17.39 10.90 38.48 2.67
130 131 0.613012 GGCAAAGGGTCCTGCAGATT 60.613 55.000 17.39 0.00 40.46 2.40
131 132 1.000396 GGCAAAGGGTCCTGCAGAT 60.000 57.895 17.39 0.00 40.46 2.90
132 133 2.436109 GGCAAAGGGTCCTGCAGA 59.564 61.111 17.39 0.00 40.46 4.26
133 134 2.677875 GGGCAAAGGGTCCTGCAG 60.678 66.667 6.78 6.78 40.46 4.41
134 135 2.384933 AATGGGCAAAGGGTCCTGCA 62.385 55.000 4.16 0.00 43.75 4.41
135 136 1.607801 GAATGGGCAAAGGGTCCTGC 61.608 60.000 0.00 0.00 43.75 4.85
136 137 0.972471 GGAATGGGCAAAGGGTCCTG 60.972 60.000 0.00 0.00 43.75 3.86
137 138 1.388133 GGAATGGGCAAAGGGTCCT 59.612 57.895 0.00 0.00 43.75 3.85
138 139 1.685765 GGGAATGGGCAAAGGGTCC 60.686 63.158 0.00 0.00 43.63 4.46
139 140 2.052104 CGGGAATGGGCAAAGGGTC 61.052 63.158 0.00 0.00 0.00 4.46
140 141 2.037208 CGGGAATGGGCAAAGGGT 59.963 61.111 0.00 0.00 0.00 4.34
141 142 2.037208 ACGGGAATGGGCAAAGGG 59.963 61.111 0.00 0.00 0.00 3.95
142 143 2.406616 CGACGGGAATGGGCAAAGG 61.407 63.158 0.00 0.00 0.00 3.11
143 144 2.406616 CCGACGGGAATGGGCAAAG 61.407 63.158 5.81 0.00 34.06 2.77
144 145 2.360600 CCGACGGGAATGGGCAAA 60.361 61.111 5.81 0.00 34.06 3.68
145 146 3.642503 ACCGACGGGAATGGGCAA 61.643 61.111 20.00 0.00 36.97 4.52
146 147 4.402528 CACCGACGGGAATGGGCA 62.403 66.667 20.00 0.00 36.97 5.36
147 148 3.400599 ATCACCGACGGGAATGGGC 62.401 63.158 20.00 0.00 36.97 5.36
148 149 1.523711 CATCACCGACGGGAATGGG 60.524 63.158 20.00 0.31 36.97 4.00
149 150 0.392461 AACATCACCGACGGGAATGG 60.392 55.000 25.39 12.47 35.61 3.16
150 151 1.006832 GAACATCACCGACGGGAATG 58.993 55.000 20.00 21.32 36.62 2.67
151 152 0.611200 TGAACATCACCGACGGGAAT 59.389 50.000 20.00 8.17 36.97 3.01
152 153 0.320073 GTGAACATCACCGACGGGAA 60.320 55.000 20.00 5.83 41.37 3.97
153 154 1.290955 GTGAACATCACCGACGGGA 59.709 57.895 20.00 12.96 41.37 5.14
154 155 0.601576 TTGTGAACATCACCGACGGG 60.602 55.000 20.00 7.45 46.40 5.28
155 156 0.511221 GTTGTGAACATCACCGACGG 59.489 55.000 13.61 13.61 46.40 4.79
156 157 1.213491 TGTTGTGAACATCACCGACG 58.787 50.000 7.94 0.00 46.40 5.12
165 166 4.397481 TGCCAAAATCATGTTGTGAACA 57.603 36.364 0.00 0.00 46.94 3.18
166 167 5.272167 CATGCCAAAATCATGTTGTGAAC 57.728 39.130 0.00 0.00 40.97 3.18
174 175 4.183101 GGGTTACACATGCCAAAATCATG 58.817 43.478 0.00 1.85 44.99 3.07
175 176 3.119173 CGGGTTACACATGCCAAAATCAT 60.119 43.478 0.00 0.00 0.00 2.45
176 177 2.230025 CGGGTTACACATGCCAAAATCA 59.770 45.455 0.00 0.00 0.00 2.57
177 178 2.490115 TCGGGTTACACATGCCAAAATC 59.510 45.455 0.00 0.00 0.00 2.17
178 179 2.491693 CTCGGGTTACACATGCCAAAAT 59.508 45.455 0.00 0.00 0.00 1.82
179 180 1.883275 CTCGGGTTACACATGCCAAAA 59.117 47.619 0.00 0.00 0.00 2.44
180 181 1.202830 ACTCGGGTTACACATGCCAAA 60.203 47.619 0.00 0.00 0.00 3.28
181 182 0.398696 ACTCGGGTTACACATGCCAA 59.601 50.000 0.00 0.00 0.00 4.52
182 183 0.036765 GACTCGGGTTACACATGCCA 60.037 55.000 0.00 0.00 0.00 4.92
183 184 0.036765 TGACTCGGGTTACACATGCC 60.037 55.000 0.00 0.00 0.00 4.40
184 185 1.076332 GTGACTCGGGTTACACATGC 58.924 55.000 5.31 0.00 33.00 4.06
185 186 1.336517 ACGTGACTCGGGTTACACATG 60.337 52.381 11.26 1.85 44.69 3.21
186 187 0.963962 ACGTGACTCGGGTTACACAT 59.036 50.000 11.26 0.00 44.69 3.21
187 188 0.031043 CACGTGACTCGGGTTACACA 59.969 55.000 10.90 0.00 44.69 3.72
188 189 1.280206 GCACGTGACTCGGGTTACAC 61.280 60.000 22.23 4.14 45.75 2.90
189 190 1.007038 GCACGTGACTCGGGTTACA 60.007 57.895 22.23 0.00 45.75 2.41
190 191 1.007336 CAGCACGTGACTCGGGTTAC 61.007 60.000 22.23 0.00 45.75 2.50
191 192 1.287815 CAGCACGTGACTCGGGTTA 59.712 57.895 22.23 0.00 45.75 2.85
192 193 2.029073 CAGCACGTGACTCGGGTT 59.971 61.111 22.23 0.00 45.75 4.11
193 194 4.664677 GCAGCACGTGACTCGGGT 62.665 66.667 22.23 0.00 45.75 5.28
194 195 4.363990 AGCAGCACGTGACTCGGG 62.364 66.667 22.23 5.68 46.88 5.14
195 196 2.807045 GAGCAGCACGTGACTCGG 60.807 66.667 22.23 3.38 44.69 4.63
196 197 2.050077 TGAGCAGCACGTGACTCG 60.050 61.111 22.23 11.32 46.00 4.18
197 198 3.853712 CTGAGCAGCACGTGACTC 58.146 61.111 22.23 21.07 32.79 3.36
207 208 1.369839 CTGCATCTGTGGCTGAGCAG 61.370 60.000 6.82 0.00 42.69 4.24
208 209 1.376812 CTGCATCTGTGGCTGAGCA 60.377 57.895 6.82 0.00 32.64 4.26
209 210 2.113433 CCTGCATCTGTGGCTGAGC 61.113 63.158 0.00 0.00 32.64 4.26
210 211 1.451567 CCCTGCATCTGTGGCTGAG 60.452 63.158 0.00 0.00 32.64 3.35
211 212 1.907222 CTCCCTGCATCTGTGGCTGA 61.907 60.000 0.00 0.00 32.64 4.26
212 213 1.451567 CTCCCTGCATCTGTGGCTG 60.452 63.158 0.00 0.00 0.00 4.85
213 214 2.677289 CCTCCCTGCATCTGTGGCT 61.677 63.158 0.00 0.00 0.00 4.75
214 215 2.124403 CCTCCCTGCATCTGTGGC 60.124 66.667 0.00 0.00 0.00 5.01
215 216 1.222936 GTCCTCCCTGCATCTGTGG 59.777 63.158 0.00 0.00 0.00 4.17
216 217 0.325933 TTGTCCTCCCTGCATCTGTG 59.674 55.000 0.00 0.00 0.00 3.66
217 218 1.067295 TTTGTCCTCCCTGCATCTGT 58.933 50.000 0.00 0.00 0.00 3.41
218 219 2.205022 TTTTGTCCTCCCTGCATCTG 57.795 50.000 0.00 0.00 0.00 2.90
219 220 2.158475 TGTTTTTGTCCTCCCTGCATCT 60.158 45.455 0.00 0.00 0.00 2.90
220 221 2.238521 TGTTTTTGTCCTCCCTGCATC 58.761 47.619 0.00 0.00 0.00 3.91
221 222 2.380064 TGTTTTTGTCCTCCCTGCAT 57.620 45.000 0.00 0.00 0.00 3.96
222 223 2.151502 TTGTTTTTGTCCTCCCTGCA 57.848 45.000 0.00 0.00 0.00 4.41
223 224 2.867647 GCATTGTTTTTGTCCTCCCTGC 60.868 50.000 0.00 0.00 0.00 4.85
224 225 2.364970 TGCATTGTTTTTGTCCTCCCTG 59.635 45.455 0.00 0.00 0.00 4.45
225 226 2.629617 CTGCATTGTTTTTGTCCTCCCT 59.370 45.455 0.00 0.00 0.00 4.20
226 227 2.867647 GCTGCATTGTTTTTGTCCTCCC 60.868 50.000 0.00 0.00 0.00 4.30
227 228 2.407090 GCTGCATTGTTTTTGTCCTCC 58.593 47.619 0.00 0.00 0.00 4.30
228 229 2.036346 AGGCTGCATTGTTTTTGTCCTC 59.964 45.455 0.50 0.00 0.00 3.71
229 230 2.041701 AGGCTGCATTGTTTTTGTCCT 58.958 42.857 0.50 0.00 0.00 3.85
230 231 2.531522 AGGCTGCATTGTTTTTGTCC 57.468 45.000 0.50 0.00 0.00 4.02
231 232 3.243704 TGGTAGGCTGCATTGTTTTTGTC 60.244 43.478 4.64 0.00 0.00 3.18
232 233 2.697751 TGGTAGGCTGCATTGTTTTTGT 59.302 40.909 4.64 0.00 0.00 2.83
233 234 3.383620 TGGTAGGCTGCATTGTTTTTG 57.616 42.857 4.64 0.00 0.00 2.44
234 235 4.126437 GTTTGGTAGGCTGCATTGTTTTT 58.874 39.130 4.64 0.00 0.00 1.94
235 236 3.494223 GGTTTGGTAGGCTGCATTGTTTT 60.494 43.478 4.64 0.00 0.00 2.43
236 237 2.037121 GGTTTGGTAGGCTGCATTGTTT 59.963 45.455 4.64 0.00 0.00 2.83
237 238 1.618343 GGTTTGGTAGGCTGCATTGTT 59.382 47.619 4.64 0.00 0.00 2.83
238 239 1.203050 AGGTTTGGTAGGCTGCATTGT 60.203 47.619 4.64 0.00 0.00 2.71
239 240 1.474077 GAGGTTTGGTAGGCTGCATTG 59.526 52.381 4.64 0.00 0.00 2.82
240 241 1.616994 GGAGGTTTGGTAGGCTGCATT 60.617 52.381 4.64 0.00 0.00 3.56
241 242 0.034089 GGAGGTTTGGTAGGCTGCAT 60.034 55.000 4.64 0.00 0.00 3.96
242 243 1.378762 GGAGGTTTGGTAGGCTGCA 59.621 57.895 4.64 0.00 0.00 4.41
243 244 0.678048 CTGGAGGTTTGGTAGGCTGC 60.678 60.000 0.00 0.00 0.00 5.25
244 245 0.984230 TCTGGAGGTTTGGTAGGCTG 59.016 55.000 0.00 0.00 0.00 4.85
245 246 0.984995 GTCTGGAGGTTTGGTAGGCT 59.015 55.000 0.00 0.00 0.00 4.58
246 247 0.035343 GGTCTGGAGGTTTGGTAGGC 60.035 60.000 0.00 0.00 0.00 3.93
247 248 1.555533 GAGGTCTGGAGGTTTGGTAGG 59.444 57.143 0.00 0.00 0.00 3.18
248 249 1.555533 GGAGGTCTGGAGGTTTGGTAG 59.444 57.143 0.00 0.00 0.00 3.18
249 250 1.151413 AGGAGGTCTGGAGGTTTGGTA 59.849 52.381 0.00 0.00 0.00 3.25
250 251 0.104409 AGGAGGTCTGGAGGTTTGGT 60.104 55.000 0.00 0.00 0.00 3.67
251 252 1.952621 TAGGAGGTCTGGAGGTTTGG 58.047 55.000 0.00 0.00 0.00 3.28
252 253 4.030913 TGTATAGGAGGTCTGGAGGTTTG 58.969 47.826 0.00 0.00 0.00 2.93
253 254 4.348020 TGTATAGGAGGTCTGGAGGTTT 57.652 45.455 0.00 0.00 0.00 3.27
254 255 4.031611 GTTGTATAGGAGGTCTGGAGGTT 58.968 47.826 0.00 0.00 0.00 3.50
255 256 3.644335 GTTGTATAGGAGGTCTGGAGGT 58.356 50.000 0.00 0.00 0.00 3.85
256 257 2.623889 CGTTGTATAGGAGGTCTGGAGG 59.376 54.545 0.00 0.00 0.00 4.30
257 258 2.034812 GCGTTGTATAGGAGGTCTGGAG 59.965 54.545 0.00 0.00 0.00 3.86
258 259 2.029623 GCGTTGTATAGGAGGTCTGGA 58.970 52.381 0.00 0.00 0.00 3.86
259 260 2.032620 AGCGTTGTATAGGAGGTCTGG 58.967 52.381 0.00 0.00 0.00 3.86
260 261 3.802948 AAGCGTTGTATAGGAGGTCTG 57.197 47.619 0.00 0.00 0.00 3.51
261 262 5.739358 GCATAAAGCGTTGTATAGGAGGTCT 60.739 44.000 0.00 0.00 0.00 3.85
262 263 4.448060 GCATAAAGCGTTGTATAGGAGGTC 59.552 45.833 0.00 0.00 0.00 3.85
263 264 4.377897 GCATAAAGCGTTGTATAGGAGGT 58.622 43.478 0.00 0.00 0.00 3.85
279 280 4.847198 TCTCTGCTTCCTTGATGCATAAA 58.153 39.130 0.00 0.00 40.83 1.40
290 294 1.143620 GAGCGCATCTCTGCTTCCT 59.856 57.895 11.47 0.00 46.65 3.36
335 339 1.370900 CAGTGCTCGGTTTGCTTGC 60.371 57.895 0.00 0.00 0.00 4.01
349 353 3.086600 GAGGGGGAGGGAGCAGTG 61.087 72.222 0.00 0.00 0.00 3.66
350 354 3.615811 TGAGGGGGAGGGAGCAGT 61.616 66.667 0.00 0.00 0.00 4.40
352 356 3.194025 AAGTGAGGGGGAGGGAGCA 62.194 63.158 0.00 0.00 0.00 4.26
354 358 1.997874 CCAAGTGAGGGGGAGGGAG 60.998 68.421 0.00 0.00 0.00 4.30
356 360 1.852626 AACCAAGTGAGGGGGAGGG 60.853 63.158 0.00 0.00 0.00 4.30
357 361 0.842467 AGAACCAAGTGAGGGGGAGG 60.842 60.000 0.00 0.00 0.00 4.30
358 362 0.615850 GAGAACCAAGTGAGGGGGAG 59.384 60.000 0.00 0.00 0.00 4.30
359 363 0.104672 TGAGAACCAAGTGAGGGGGA 60.105 55.000 0.00 0.00 0.00 4.81
360 364 0.326264 CTGAGAACCAAGTGAGGGGG 59.674 60.000 0.00 0.00 0.00 5.40
367 390 1.843851 TGTCAACCCTGAGAACCAAGT 59.156 47.619 0.00 0.00 30.14 3.16
383 413 1.737838 GATCAATGGCCGAGTTGTCA 58.262 50.000 13.09 0.00 0.00 3.58
405 435 1.926561 TTCAATCTGACGGCGATCAG 58.073 50.000 24.04 24.04 46.40 2.90
417 447 9.453830 ACTAAAGGAATAGTAGGGATTCAATCT 57.546 33.333 0.00 0.00 34.40 2.40
436 471 8.023128 CAGGTCACAATTTGTATTGACTAAAGG 58.977 37.037 14.58 0.00 43.12 3.11
470 505 5.473162 CCGTTGGCTGGAATTGATATATTCA 59.527 40.000 0.00 0.00 36.46 2.57
480 515 0.179004 TGTCACCGTTGGCTGGAATT 60.179 50.000 0.00 0.00 0.00 2.17
494 529 3.664107 TGAAGTGAAGCCATAGTGTCAC 58.336 45.455 0.00 0.00 40.56 3.67
505 540 8.801715 TTGTTAAGAATCAATTGAAGTGAAGC 57.198 30.769 13.09 1.78 0.00 3.86
534 572 2.492088 GCCCTCACCAACTGAAAATACC 59.508 50.000 0.00 0.00 0.00 2.73
547 585 1.794714 TAGAGAGAATGGCCCTCACC 58.205 55.000 0.00 0.00 33.25 4.02
596 637 0.883833 CGCAGTTGCCCAAGAATTCT 59.116 50.000 0.88 0.88 37.91 2.40
755 807 7.830940 TTACGAACTTTTTCACACAGTTCTA 57.169 32.000 9.07 0.31 42.88 2.10
775 827 5.067283 CCAAACTCCCCCTATCAAATTTACG 59.933 44.000 0.00 0.00 0.00 3.18
790 842 5.995565 AAAATTAGTAAGCCCAAACTCCC 57.004 39.130 0.00 0.00 0.00 4.30
815 867 1.172180 TGCACTAGGCCAGTTGCAAC 61.172 55.000 22.17 22.17 43.89 4.17
840 892 5.978919 TCTGCAGAATTTTTGTGACACATTC 59.021 36.000 15.67 10.06 0.00 2.67
846 900 7.704789 AGATTTTCTGCAGAATTTTTGTGAC 57.295 32.000 28.89 12.72 33.54 3.67
857 911 5.461526 CCGATCGTATAGATTTTCTGCAGA 58.538 41.667 13.74 13.74 40.26 4.26
904 958 4.111016 TCGGTGCCACTCGCGTAG 62.111 66.667 5.77 4.90 42.08 3.51
928 982 0.757561 TCCGGAGATGGATGGCGTAA 60.758 55.000 0.00 0.00 31.53 3.18
976 1030 0.104120 CGCGGGAGGATATTGTGACA 59.896 55.000 0.00 0.00 0.00 3.58
978 1032 1.069090 GCGCGGGAGGATATTGTGA 59.931 57.895 8.83 0.00 0.00 3.58
980 1034 2.426023 GGCGCGGGAGGATATTGT 59.574 61.111 8.83 0.00 0.00 2.71
981 1035 2.738521 CGGCGCGGGAGGATATTG 60.739 66.667 8.83 0.00 0.00 1.90
1166 1220 2.046892 CTCGACCAACCCAGCCAG 60.047 66.667 0.00 0.00 0.00 4.85
1189 1243 4.367023 GGGACGCGTACCAGTGCA 62.367 66.667 35.58 0.00 32.35 4.57
1249 1303 2.994995 TCCTCGGGCTCAGCGAAA 60.995 61.111 0.00 0.00 0.00 3.46
1389 1443 0.108396 TGATACGGTCGGTCGGGATA 59.892 55.000 3.69 0.00 0.00 2.59
1646 1712 4.293648 TGTCCACCTGCACCGTCG 62.294 66.667 0.00 0.00 0.00 5.12
1703 1769 1.812571 GCGCCAGAAGAAATCTTGGAA 59.187 47.619 0.00 0.00 35.73 3.53
1758 1824 7.606858 ACAATATGTGAAAGACTGACATGAG 57.393 36.000 0.00 0.00 32.59 2.90
2079 2499 3.585862 AGTAGCATTTACCGGCATATCG 58.414 45.455 0.00 0.00 0.00 2.92
2093 2513 2.093447 GGAGCAACACAGGTAGTAGCAT 60.093 50.000 1.58 0.00 0.00 3.79
2100 2520 2.486548 GGAAACTGGAGCAACACAGGTA 60.487 50.000 0.00 0.00 39.00 3.08
2101 2521 1.680338 GAAACTGGAGCAACACAGGT 58.320 50.000 0.00 0.00 39.00 4.00
2102 2522 0.954452 GGAAACTGGAGCAACACAGG 59.046 55.000 0.00 0.00 39.00 4.00
2123 2543 7.391148 TTGGCTAATTGATTAACAGGAAGAC 57.609 36.000 0.00 0.00 0.00 3.01
2128 2548 7.122055 TGGTACTTTGGCTAATTGATTAACAGG 59.878 37.037 0.00 0.00 0.00 4.00
2129 2549 8.050778 TGGTACTTTGGCTAATTGATTAACAG 57.949 34.615 0.00 0.00 0.00 3.16
2208 2631 4.163839 AGCTTTCTCATCCTGCTGATAGTT 59.836 41.667 0.00 0.00 32.32 2.24
2425 2851 4.365723 ACTGAGAAGCAAACATGCAAAAG 58.634 39.130 3.41 0.00 37.25 2.27
2448 2874 1.992557 TCTTTAGGGACCAAGCCATGT 59.007 47.619 0.00 0.00 0.00 3.21
2623 3049 2.528818 CCTGACCAGGCCCTTGACA 61.529 63.158 0.00 0.00 42.44 3.58
2661 3087 0.039180 TTCGTACAGAGCCCAGAGGA 59.961 55.000 0.00 0.00 33.47 3.71
2662 3088 0.173708 GTTCGTACAGAGCCCAGAGG 59.826 60.000 0.00 0.00 0.00 3.69
2709 3135 4.749245 AAAATGGACTTCAGCTACAACG 57.251 40.909 0.00 0.00 0.00 4.10
2711 3137 6.206634 CCAGTAAAAATGGACTTCAGCTACAA 59.793 38.462 0.00 0.00 40.51 2.41
2772 3198 1.275010 TCTCAAGCTGCATGGACGTTA 59.725 47.619 4.93 0.00 0.00 3.18
2915 3344 0.035056 AAGGAAGACGCTGGGGAATG 60.035 55.000 0.00 0.00 0.00 2.67
3065 3494 1.405105 GGCTTTGCTCACAGACAACAA 59.595 47.619 0.00 0.00 0.00 2.83
3090 3519 2.478547 AACGCCGAAAATGAAACGTT 57.521 40.000 0.00 0.00 38.75 3.99
3112 3541 1.933853 CGTAAGTGGCCTGTTATGAGC 59.066 52.381 3.32 0.00 0.00 4.26
3153 3612 0.877743 GGGCTTCTGTTTGCTCAGTC 59.122 55.000 0.00 0.00 36.85 3.51
3192 3651 5.622007 CGTGTCTATGTGAATGGGCATTTTT 60.622 40.000 0.00 0.00 0.00 1.94
3197 3657 1.552792 TCGTGTCTATGTGAATGGGCA 59.447 47.619 0.00 0.00 0.00 5.36
3213 3673 4.006989 TGGAATGTCCTGGTTAATTCGTG 58.993 43.478 0.00 0.00 37.46 4.35
3228 3688 4.220382 TGAGCATTTTCGGATTTGGAATGT 59.780 37.500 0.00 0.00 31.96 2.71
3361 3822 8.379902 GGCGATTGAAAAATATTTTCGTGAATT 58.620 29.630 13.68 0.00 31.91 2.17
3459 3933 2.668550 GTCCCACGTCTTGGCACC 60.669 66.667 0.00 0.00 45.37 5.01
3460 3934 1.961277 CAGTCCCACGTCTTGGCAC 60.961 63.158 0.00 0.00 45.37 5.01
3461 3935 2.425592 CAGTCCCACGTCTTGGCA 59.574 61.111 0.00 0.00 45.37 4.92
3462 3936 3.050275 GCAGTCCCACGTCTTGGC 61.050 66.667 0.00 0.00 45.37 4.52
3496 3970 1.783071 TTTCCTTTCACAACACCCCC 58.217 50.000 0.00 0.00 0.00 5.40
3518 3992 0.246635 AACCGACGGAACTCCATCAG 59.753 55.000 23.38 0.00 35.14 2.90
3519 3993 1.475280 CTAACCGACGGAACTCCATCA 59.525 52.381 23.38 0.00 35.14 3.07
3527 4001 0.609662 CCCTTTCCTAACCGACGGAA 59.390 55.000 23.38 7.23 37.52 4.30
3538 4012 2.039613 CAGCTGAACTCTTCCCTTTCCT 59.960 50.000 8.42 0.00 0.00 3.36
3571 4045 3.845781 AAACAGTCCTTCTTCTGAGCA 57.154 42.857 0.00 0.00 35.84 4.26
3575 4049 3.954258 ACCCAAAAACAGTCCTTCTTCTG 59.046 43.478 0.00 0.00 37.65 3.02
3585 4059 2.387757 ACTGATGCACCCAAAAACAGT 58.612 42.857 0.00 0.00 33.29 3.55
3587 4061 3.030291 AGAACTGATGCACCCAAAAACA 58.970 40.909 0.00 0.00 0.00 2.83
3609 4083 0.967380 CCATCACTCCAACCAAGGCC 60.967 60.000 0.00 0.00 0.00 5.19
3617 4091 4.104086 AGTAGATGGTTCCATCACTCCAA 58.896 43.478 26.92 8.15 43.68 3.53
3619 4093 6.042093 TCAATAGTAGATGGTTCCATCACTCC 59.958 42.308 26.92 14.61 43.68 3.85
3647 4171 1.003759 ACGCTTCTCTACACGCTATCG 60.004 52.381 0.00 0.00 42.43 2.92
3693 4217 5.924356 TCCGAAGCAATGGTCATAGAATTA 58.076 37.500 0.00 0.00 0.00 1.40
3698 4222 3.879295 ACAATCCGAAGCAATGGTCATAG 59.121 43.478 0.00 0.00 0.00 2.23
3732 4256 3.593780 AGGGATTCTTCCTGTAGGCTTTT 59.406 43.478 0.00 0.00 42.20 2.27
3733 4257 3.193782 AGGGATTCTTCCTGTAGGCTTT 58.806 45.455 0.00 0.00 42.20 3.51
3738 4263 3.519510 TCACCAAGGGATTCTTCCTGTAG 59.480 47.826 0.00 0.00 42.20 2.74
3740 4265 2.348472 TCACCAAGGGATTCTTCCTGT 58.652 47.619 0.00 0.00 42.20 4.00
3748 4273 7.399765 TGATCATTATGTTTTCACCAAGGGATT 59.600 33.333 0.00 0.00 0.00 3.01
3775 4300 7.055667 TCCTGCATATCTGTAACCTCTTTAG 57.944 40.000 0.00 0.00 0.00 1.85
3778 4303 4.965532 ACTCCTGCATATCTGTAACCTCTT 59.034 41.667 0.00 0.00 0.00 2.85
3800 4325 6.431234 ACTTGAAAACAATCCTAGTCATGGAC 59.569 38.462 0.00 0.00 36.30 4.02
3813 4338 7.505585 TGATCTACCCTCAAACTTGAAAACAAT 59.494 33.333 0.00 0.00 36.64 2.71
3821 4346 7.415989 CCATTTGATGATCTACCCTCAAACTTG 60.416 40.741 0.00 0.00 39.60 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.