Multiple sequence alignment - TraesCS7B01G165400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G165400 chr7B 100.000 7031 0 0 1 7031 228387377 228394407 0.000000e+00 12984.0
1 TraesCS7B01G165400 chr7B 88.610 2792 222 44 3886 6649 228784334 228787057 0.000000e+00 3306.0
2 TraesCS7B01G165400 chr7B 87.345 727 55 16 1093 1795 228782370 228783083 0.000000e+00 798.0
3 TraesCS7B01G165400 chr7B 94.248 452 17 6 2860 3307 228783076 228783522 0.000000e+00 682.0
4 TraesCS7B01G165400 chr7B 90.323 124 6 3 879 999 228782090 228782210 2.630000e-34 158.0
5 TraesCS7B01G165400 chr7B 94.565 92 4 1 1007 1098 228782255 228782345 2.640000e-29 141.0
6 TraesCS7B01G165400 chr7B 94.382 89 3 1 1 87 551050202 551050290 1.230000e-27 135.0
7 TraesCS7B01G165400 chr7A 93.026 2667 114 21 4342 6997 269960323 269957718 0.000000e+00 3829.0
8 TraesCS7B01G165400 chr7A 89.041 2409 184 26 4261 6649 269280776 269278428 0.000000e+00 2913.0
9 TraesCS7B01G165400 chr7A 90.596 1744 92 12 86 1797 269965900 269964197 0.000000e+00 2246.0
10 TraesCS7B01G165400 chr7A 96.452 620 19 2 2860 3476 269964206 269963587 0.000000e+00 1020.0
11 TraesCS7B01G165400 chr7A 89.987 789 40 16 3574 4345 269961191 269960425 0.000000e+00 983.0
12 TraesCS7B01G165400 chr7A 93.226 620 36 4 2860 3476 269282406 269281790 0.000000e+00 907.0
13 TraesCS7B01G165400 chr7A 87.101 814 55 26 2088 2859 403188604 403189409 0.000000e+00 876.0
14 TraesCS7B01G165400 chr7A 85.577 832 59 25 1007 1796 269283210 269282398 0.000000e+00 815.0
15 TraesCS7B01G165400 chr7A 95.400 500 17 4 1797 2295 110944167 110943673 0.000000e+00 791.0
16 TraesCS7B01G165400 chr7A 95.152 495 21 3 1798 2290 563822703 563822210 0.000000e+00 778.0
17 TraesCS7B01G165400 chr7A 87.654 405 31 9 3892 4280 269281482 269281081 2.990000e-123 453.0
18 TraesCS7B01G165400 chr7A 90.714 140 7 3 6653 6792 269278489 269278356 1.560000e-41 182.0
19 TraesCS7B01G165400 chr7A 93.220 118 5 2 882 999 269283369 269283255 3.370000e-38 171.0
20 TraesCS7B01G165400 chr7A 98.864 88 1 0 3475 3562 167268792 167268879 2.630000e-34 158.0
21 TraesCS7B01G165400 chr7A 84.848 66 9 1 6788 6852 269277984 269277919 1.640000e-06 65.8
22 TraesCS7B01G165400 chr7D 92.311 2614 104 36 3555 6146 251507587 251510125 0.000000e+00 3624.0
23 TraesCS7B01G165400 chr7D 88.643 2800 225 31 3886 6649 252028960 252031702 0.000000e+00 3323.0
24 TraesCS7B01G165400 chr7D 89.885 1740 112 21 86 1797 251505278 251506981 0.000000e+00 2180.0
25 TraesCS7B01G165400 chr7D 95.409 893 25 6 6139 7026 251516227 251517108 0.000000e+00 1408.0
26 TraesCS7B01G165400 chr7D 97.097 620 15 2 2860 3476 251506972 251507591 0.000000e+00 1042.0
27 TraesCS7B01G165400 chr7D 86.506 830 57 19 1007 1797 252026893 252027706 0.000000e+00 861.0
28 TraesCS7B01G165400 chr7D 94.469 452 20 4 2860 3307 252027697 252028147 0.000000e+00 691.0
29 TraesCS7B01G165400 chr7D 91.484 411 13 5 2458 2862 529482341 529482735 4.800000e-151 545.0
30 TraesCS7B01G165400 chr7D 92.529 174 13 0 3303 3476 252028483 252028656 4.210000e-62 250.0
31 TraesCS7B01G165400 chr7D 92.254 142 10 1 6649 6789 252031637 252031778 4.300000e-47 200.0
32 TraesCS7B01G165400 chr7D 89.516 124 7 3 879 999 252026728 252026848 1.220000e-32 152.0
33 TraesCS7B01G165400 chr5A 88.859 1122 64 15 1797 2862 26686520 26685404 0.000000e+00 1323.0
34 TraesCS7B01G165400 chr5A 89.328 253 27 0 489 741 471305849 471305597 1.140000e-82 318.0
35 TraesCS7B01G165400 chr5A 96.471 85 3 0 2 86 590700200 590700284 2.640000e-29 141.0
36 TraesCS7B01G165400 chr3A 85.714 882 66 18 1794 2618 12546700 12547578 0.000000e+00 876.0
37 TraesCS7B01G165400 chr2A 84.979 932 64 25 1972 2861 691508454 691509351 0.000000e+00 876.0
38 TraesCS7B01G165400 chr4D 96.356 494 17 1 1798 2290 6901331 6900838 0.000000e+00 811.0
39 TraesCS7B01G165400 chr4D 95.758 495 20 1 1797 2290 473813370 473812876 0.000000e+00 797.0
40 TraesCS7B01G165400 chr4D 93.660 347 19 3 2516 2859 473812270 473811924 3.760000e-142 516.0
41 TraesCS7B01G165400 chr3D 96.356 494 17 1 1798 2290 209674727 209675220 0.000000e+00 811.0
42 TraesCS7B01G165400 chr3D 95.954 346 12 2 2516 2859 209675826 209676171 1.710000e-155 560.0
43 TraesCS7B01G165400 chr3D 93.000 100 7 0 3460 3559 583868974 583869073 5.680000e-31 147.0
44 TraesCS7B01G165400 chr3D 89.320 103 9 2 1 101 552511669 552511567 2.060000e-25 128.0
45 TraesCS7B01G165400 chr4A 95.519 491 20 2 1798 2287 626962784 626963273 0.000000e+00 784.0
46 TraesCS7B01G165400 chr4A 93.913 345 19 2 2516 2859 626963911 626964254 2.910000e-143 520.0
47 TraesCS7B01G165400 chr4A 94.505 91 4 1 1 90 371873489 371873579 9.510000e-29 139.0
48 TraesCS7B01G165400 chr3B 93.800 500 25 3 1797 2290 77642114 77642613 0.000000e+00 747.0
49 TraesCS7B01G165400 chr3B 85.821 268 28 2 499 766 822004634 822004377 6.950000e-70 276.0
50 TraesCS7B01G165400 chr3B 85.821 268 28 2 499 766 822035068 822034811 6.950000e-70 276.0
51 TraesCS7B01G165400 chr3B 85.502 269 29 2 499 767 822063234 822062976 8.990000e-69 272.0
52 TraesCS7B01G165400 chr3B 94.792 96 5 0 3474 3569 72458275 72458370 4.390000e-32 150.0
53 TraesCS7B01G165400 chr2D 95.213 376 18 0 2484 2859 620991241 620991616 4.700000e-166 595.0
54 TraesCS7B01G165400 chr2D 94.792 96 5 0 3475 3570 627260966 627260871 4.390000e-32 150.0
55 TraesCS7B01G165400 chr6A 91.892 407 29 1 2457 2859 411898329 411897923 3.680000e-157 566.0
56 TraesCS7B01G165400 chrUn 87.097 279 31 1 489 767 98340468 98340195 1.900000e-80 311.0
57 TraesCS7B01G165400 chrUn 95.402 87 3 1 1 86 480423492 480423578 3.420000e-28 137.0
58 TraesCS7B01G165400 chr2B 86.940 268 30 3 500 767 731334117 731334379 5.330000e-76 296.0
59 TraesCS7B01G165400 chr2B 92.553 94 6 1 1 93 95391005 95391098 4.420000e-27 134.0
60 TraesCS7B01G165400 chr5D 86.561 253 34 0 489 741 369105924 369106176 5.370000e-71 279.0
61 TraesCS7B01G165400 chr5D 96.739 92 3 0 3468 3559 45483687 45483778 3.400000e-33 154.0
62 TraesCS7B01G165400 chr5D 93.137 102 5 2 3462 3563 294640223 294640322 1.580000e-31 148.0
63 TraesCS7B01G165400 chr5D 92.632 95 4 3 2 93 237255375 237255469 4.420000e-27 134.0
64 TraesCS7B01G165400 chr1D 94.898 98 4 1 3475 3572 335585124 335585028 1.220000e-32 152.0
65 TraesCS7B01G165400 chr5B 93.069 101 6 1 3466 3566 464321733 464321832 5.680000e-31 147.0
66 TraesCS7B01G165400 chr5B 96.552 87 2 1 1 86 501418545 501418459 7.350000e-30 143.0
67 TraesCS7B01G165400 chr4B 90.351 114 7 4 3461 3574 106975846 106975955 5.680000e-31 147.0
68 TraesCS7B01G165400 chr1A 93.000 100 3 4 1 98 419810359 419810262 7.350000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G165400 chr7B 228387377 228394407 7030 False 12984.000000 12984 100.000000 1 7031 1 chr7B.!!$F1 7030
1 TraesCS7B01G165400 chr7B 228782090 228787057 4967 False 1017.000000 3306 91.018200 879 6649 5 chr7B.!!$F3 5770
2 TraesCS7B01G165400 chr7A 269957718 269965900 8182 True 2019.500000 3829 92.515250 86 6997 4 chr7A.!!$R4 6911
3 TraesCS7B01G165400 chr7A 403188604 403189409 805 False 876.000000 876 87.101000 2088 2859 1 chr7A.!!$F2 771
4 TraesCS7B01G165400 chr7A 269277919 269283369 5450 True 786.685714 2913 89.182857 882 6852 7 chr7A.!!$R3 5970
5 TraesCS7B01G165400 chr7D 251505278 251510125 4847 False 2282.000000 3624 93.097667 86 6146 3 chr7D.!!$F3 6060
6 TraesCS7B01G165400 chr7D 251516227 251517108 881 False 1408.000000 1408 95.409000 6139 7026 1 chr7D.!!$F1 887
7 TraesCS7B01G165400 chr7D 252026728 252031778 5050 False 912.833333 3323 90.652833 879 6789 6 chr7D.!!$F4 5910
8 TraesCS7B01G165400 chr5A 26685404 26686520 1116 True 1323.000000 1323 88.859000 1797 2862 1 chr5A.!!$R1 1065
9 TraesCS7B01G165400 chr3A 12546700 12547578 878 False 876.000000 876 85.714000 1794 2618 1 chr3A.!!$F1 824
10 TraesCS7B01G165400 chr2A 691508454 691509351 897 False 876.000000 876 84.979000 1972 2861 1 chr2A.!!$F1 889
11 TraesCS7B01G165400 chr4D 473811924 473813370 1446 True 656.500000 797 94.709000 1797 2859 2 chr4D.!!$R2 1062
12 TraesCS7B01G165400 chr3D 209674727 209676171 1444 False 685.500000 811 96.155000 1798 2859 2 chr3D.!!$F2 1061
13 TraesCS7B01G165400 chr4A 626962784 626964254 1470 False 652.000000 784 94.716000 1798 2859 2 chr4A.!!$F2 1061

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 599 0.175073 GCGGTAAAGGAGGACGATGT 59.825 55.000 0.00 0.0 0.00 3.06 F
1094 1150 0.250513 CAGGGAAGAGGAGGAAACGG 59.749 60.000 0.00 0.0 0.00 4.44 F
1582 1683 0.317938 CGGTAGACCAGCATAGACGC 60.318 60.000 0.00 0.0 35.14 5.19 F
3490 4511 0.106116 GAGTACTCCCTCCGTCCCAT 60.106 60.000 12.13 0.0 0.00 4.00 F
3491 4512 1.144503 GAGTACTCCCTCCGTCCCATA 59.855 57.143 12.13 0.0 0.00 2.74 F
3492 4513 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.0 0.00 1.90 F
3732 7135 1.738700 GCTGTAGCTGGTCTTCTGCTC 60.739 57.143 0.00 0.0 45.71 4.26 F
4331 8097 2.098614 TGAGGTGTGTTGTGTTTGCAT 58.901 42.857 0.00 0.0 0.00 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1790 1909 0.250684 TCGCAATTCACTCCTGCCAA 60.251 50.000 0.00 0.0 32.27 4.52 R
2605 3277 0.031616 CTACCCTCTCCCTGCTCCTT 60.032 60.000 0.00 0.0 0.00 3.36 R
3544 4565 0.466124 GCACATACTCCCTCTGTCCC 59.534 60.000 0.00 0.0 0.00 4.46 R
5306 9190 0.763223 ACGAGGTCCAAGGTTGAGGT 60.763 55.000 0.00 0.0 0.00 3.85 R
5499 9384 3.462982 TCTAGCTTTGAAACGAGCAACA 58.537 40.909 0.00 0.0 41.31 3.33 R
5500 9385 4.083802 ACATCTAGCTTTGAAACGAGCAAC 60.084 41.667 0.00 0.0 41.31 4.17 R
5538 9423 2.159382 GATGAAAGACCGGGAAGCAAA 58.841 47.619 6.32 0.0 0.00 3.68 R
6083 9981 0.240945 GCAGCACCAAACTTACGCAT 59.759 50.000 0.00 0.0 0.00 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.964343 GGACGACACTCTTCCCTCT 58.036 57.895 0.00 0.00 29.30 3.69
19 20 1.258676 GGACGACACTCTTCCCTCTT 58.741 55.000 0.00 0.00 29.30 2.85
20 21 1.067495 GGACGACACTCTTCCCTCTTG 60.067 57.143 0.00 0.00 29.30 3.02
21 22 1.614413 GACGACACTCTTCCCTCTTGT 59.386 52.381 0.00 0.00 0.00 3.16
22 23 2.036089 GACGACACTCTTCCCTCTTGTT 59.964 50.000 0.00 0.00 0.00 2.83
23 24 2.224066 ACGACACTCTTCCCTCTTGTTG 60.224 50.000 0.00 0.00 0.00 3.33
24 25 2.147150 GACACTCTTCCCTCTTGTTGC 58.853 52.381 0.00 0.00 0.00 4.17
25 26 1.771255 ACACTCTTCCCTCTTGTTGCT 59.229 47.619 0.00 0.00 0.00 3.91
26 27 2.972713 ACACTCTTCCCTCTTGTTGCTA 59.027 45.455 0.00 0.00 0.00 3.49
27 28 3.584848 ACACTCTTCCCTCTTGTTGCTAT 59.415 43.478 0.00 0.00 0.00 2.97
28 29 3.937706 CACTCTTCCCTCTTGTTGCTATG 59.062 47.826 0.00 0.00 0.00 2.23
29 30 2.941720 CTCTTCCCTCTTGTTGCTATGC 59.058 50.000 0.00 0.00 0.00 3.14
30 31 2.305635 TCTTCCCTCTTGTTGCTATGCA 59.694 45.455 0.00 0.00 36.47 3.96
31 32 3.054139 TCTTCCCTCTTGTTGCTATGCAT 60.054 43.478 3.79 3.79 38.76 3.96
32 33 2.923121 TCCCTCTTGTTGCTATGCATC 58.077 47.619 0.19 0.00 38.76 3.91
33 34 2.239402 TCCCTCTTGTTGCTATGCATCA 59.761 45.455 0.19 0.00 38.76 3.07
34 35 2.357009 CCCTCTTGTTGCTATGCATCAC 59.643 50.000 0.19 0.00 37.87 3.06
35 36 2.357009 CCTCTTGTTGCTATGCATCACC 59.643 50.000 0.19 0.00 37.87 4.02
36 37 3.011818 CTCTTGTTGCTATGCATCACCA 58.988 45.455 0.19 0.00 37.87 4.17
37 38 3.623703 TCTTGTTGCTATGCATCACCAT 58.376 40.909 0.19 0.00 37.87 3.55
38 39 3.379057 TCTTGTTGCTATGCATCACCATG 59.621 43.478 0.19 0.00 37.87 3.66
39 40 3.002038 TGTTGCTATGCATCACCATGA 57.998 42.857 0.19 0.00 38.76 3.07
40 41 3.558033 TGTTGCTATGCATCACCATGAT 58.442 40.909 0.19 0.00 38.76 2.45
41 42 3.955551 TGTTGCTATGCATCACCATGATT 59.044 39.130 0.19 0.00 38.76 2.57
42 43 4.403113 TGTTGCTATGCATCACCATGATTT 59.597 37.500 0.19 0.00 38.76 2.17
43 44 5.105269 TGTTGCTATGCATCACCATGATTTT 60.105 36.000 0.19 0.00 38.76 1.82
44 45 4.939271 TGCTATGCATCACCATGATTTTG 58.061 39.130 0.19 0.00 34.28 2.44
45 46 3.739300 GCTATGCATCACCATGATTTTGC 59.261 43.478 0.19 0.00 34.28 3.68
46 47 3.897141 ATGCATCACCATGATTTTGCA 57.103 38.095 13.24 13.24 42.03 4.08
47 48 3.897141 TGCATCACCATGATTTTGCAT 57.103 38.095 8.61 0.00 35.67 3.96
48 49 3.526534 TGCATCACCATGATTTTGCATG 58.473 40.909 8.61 0.00 44.05 4.06
49 50 3.055747 TGCATCACCATGATTTTGCATGT 60.056 39.130 8.61 0.00 43.16 3.21
50 51 3.308595 GCATCACCATGATTTTGCATGTG 59.691 43.478 0.00 0.00 43.16 3.21
51 52 2.962125 TCACCATGATTTTGCATGTGC 58.038 42.857 0.00 0.00 43.16 4.57
52 53 1.656594 CACCATGATTTTGCATGTGCG 59.343 47.619 0.00 0.00 43.16 5.34
53 54 1.273048 ACCATGATTTTGCATGTGCGT 59.727 42.857 0.00 0.00 43.16 5.24
54 55 2.491298 ACCATGATTTTGCATGTGCGTA 59.509 40.909 0.00 0.00 43.16 4.42
55 56 3.110358 CCATGATTTTGCATGTGCGTAG 58.890 45.455 0.00 0.00 43.16 3.51
56 57 2.917701 TGATTTTGCATGTGCGTAGG 57.082 45.000 0.01 0.00 45.83 3.18
57 58 2.431454 TGATTTTGCATGTGCGTAGGA 58.569 42.857 0.01 0.00 45.83 2.94
83 84 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
84 85 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
169 170 1.886542 GTCCACCAATGAACAAGGTCC 59.113 52.381 0.00 0.00 32.15 4.46
173 174 3.563261 CCACCAATGAACAAGGTCCCATA 60.563 47.826 0.00 0.00 32.15 2.74
183 184 3.591527 ACAAGGTCCCATAATGGAAGTGA 59.408 43.478 0.00 0.00 40.96 3.41
190 191 4.408921 TCCCATAATGGAAGTGAACGATCT 59.591 41.667 0.00 0.00 40.96 2.75
209 210 6.544622 CGATCTGGGTCGTATAAGATTAGTC 58.455 44.000 0.00 0.00 36.88 2.59
278 279 6.060136 CCATGTCATCCATAGAACATGAACT 58.940 40.000 14.17 0.32 37.68 3.01
289 290 1.845266 ACATGAACTAGATGCGAGCG 58.155 50.000 0.00 0.00 0.00 5.03
297 298 2.020720 CTAGATGCGAGCGGATCCTAT 58.979 52.381 18.52 5.51 42.77 2.57
311 312 7.347252 AGCGGATCCTATAGAGTGTATCATTA 58.653 38.462 10.75 0.00 0.00 1.90
314 315 9.343539 CGGATCCTATAGAGTGTATCATTATCA 57.656 37.037 10.75 0.00 0.00 2.15
339 353 7.558161 TGCACAGTAATTCTTCATAGGAATG 57.442 36.000 0.00 0.00 34.19 2.67
369 383 3.128589 TCAGCTGGCAAATTAAACGATCC 59.871 43.478 15.13 0.00 0.00 3.36
371 385 4.335315 CAGCTGGCAAATTAAACGATCCTA 59.665 41.667 5.57 0.00 0.00 2.94
386 400 6.064846 ACGATCCTAATTCATGAACATTGC 57.935 37.500 11.07 0.00 0.00 3.56
530 544 8.778358 CAAATATGCTCCTCTAAATCTTGGTAC 58.222 37.037 0.00 0.00 0.00 3.34
571 585 2.260434 GACGTTGCCTCAGCGGTA 59.740 61.111 7.85 0.00 42.05 4.02
572 586 1.373748 GACGTTGCCTCAGCGGTAA 60.374 57.895 7.85 0.00 42.05 2.85
585 599 0.175073 GCGGTAAAGGAGGACGATGT 59.825 55.000 0.00 0.00 0.00 3.06
587 601 2.159198 GCGGTAAAGGAGGACGATGTTA 60.159 50.000 0.00 0.00 0.00 2.41
591 605 1.568504 AAGGAGGACGATGTTAGGCA 58.431 50.000 0.00 0.00 0.00 4.75
626 640 2.146342 CACAAGATTCTGCCGAAGTGT 58.854 47.619 0.00 0.00 31.60 3.55
643 657 8.501580 GCCGAAGTGTAATTCTAGTTTTACTTT 58.498 33.333 14.38 10.53 31.16 2.66
703 717 5.407502 TGTATGTCTTCTGTAATGACCACG 58.592 41.667 0.00 0.00 0.00 4.94
723 737 5.921976 CCACGTGTGTACTCTTTGTAATACA 59.078 40.000 15.65 0.00 32.25 2.29
987 1007 2.347490 GCGAAGGGAGACAAGGCA 59.653 61.111 0.00 0.00 0.00 4.75
1092 1148 1.611936 GCACAGGGAAGAGGAGGAAAC 60.612 57.143 0.00 0.00 0.00 2.78
1093 1149 0.977395 ACAGGGAAGAGGAGGAAACG 59.023 55.000 0.00 0.00 0.00 3.60
1094 1150 0.250513 CAGGGAAGAGGAGGAAACGG 59.749 60.000 0.00 0.00 0.00 4.44
1215 1310 0.388134 GAGTGAGTTGAACCGCGCTA 60.388 55.000 5.56 0.00 0.00 4.26
1218 1313 0.459585 TGAGTTGAACCGCGCTATCC 60.460 55.000 5.56 0.00 0.00 2.59
1271 1370 5.163561 ACGGTGAATCTTCATTGTGTTTTGT 60.164 36.000 0.00 0.00 39.73 2.83
1290 1389 2.240160 TGTATGCCGGGGAGTTATTTGT 59.760 45.455 2.18 0.00 0.00 2.83
1298 1397 4.219725 CCGGGGAGTTATTTGTTGAAATGT 59.780 41.667 0.00 0.00 33.63 2.71
1341 1440 6.047479 TGTTCCTAGGACTGGGATGGTATATA 59.953 42.308 12.22 0.00 40.06 0.86
1342 1441 6.088541 TCCTAGGACTGGGATGGTATATAC 57.911 45.833 7.62 4.14 35.16 1.47
1343 1442 5.558339 TCCTAGGACTGGGATGGTATATACA 59.442 44.000 7.62 1.84 35.16 2.29
1344 1443 6.221872 TCCTAGGACTGGGATGGTATATACAT 59.778 42.308 7.62 6.40 35.16 2.29
1345 1444 7.410885 TCCTAGGACTGGGATGGTATATACATA 59.589 40.741 7.62 3.63 35.16 2.29
1346 1445 8.235230 CCTAGGACTGGGATGGTATATACATAT 58.765 40.741 14.70 8.16 32.26 1.78
1350 1449 7.722728 GGACTGGGATGGTATATACATATACGA 59.277 40.741 14.70 9.07 43.73 3.43
1425 1524 4.171005 CTGTTTGATGAAATGCGCTGATT 58.829 39.130 9.73 0.00 0.00 2.57
1582 1683 0.317938 CGGTAGACCAGCATAGACGC 60.318 60.000 0.00 0.00 35.14 5.19
1615 1716 5.998363 GGGTATTTTGGTGTTAAAATTGCCA 59.002 36.000 0.94 0.00 39.96 4.92
1616 1717 6.148645 GGGTATTTTGGTGTTAAAATTGCCAG 59.851 38.462 0.94 0.00 39.96 4.85
1787 1906 4.134563 CCCCATAGGTGTTACTGTAATGC 58.865 47.826 3.23 0.32 0.00 3.56
1788 1907 4.141482 CCCCATAGGTGTTACTGTAATGCT 60.141 45.833 3.23 0.00 0.00 3.79
1789 1908 5.071250 CCCCATAGGTGTTACTGTAATGCTA 59.929 44.000 3.23 0.00 0.00 3.49
1790 1909 6.239887 CCCCATAGGTGTTACTGTAATGCTAT 60.240 42.308 3.23 0.00 0.00 2.97
1791 1910 7.224297 CCCATAGGTGTTACTGTAATGCTATT 58.776 38.462 3.23 0.00 0.00 1.73
1792 1911 7.173218 CCCATAGGTGTTACTGTAATGCTATTG 59.827 40.741 3.23 0.00 0.00 1.90
1793 1912 7.173218 CCATAGGTGTTACTGTAATGCTATTGG 59.827 40.741 3.23 4.74 0.00 3.16
1794 1913 4.881850 AGGTGTTACTGTAATGCTATTGGC 59.118 41.667 3.23 0.00 42.22 4.52
1862 1981 6.812160 GCAGGAAAGACTCTTCTACGAATTTA 59.188 38.462 0.00 0.00 0.00 1.40
1883 2002 7.712264 TTTATGCCAGAAAACACTGATTTTG 57.288 32.000 0.00 0.00 39.94 2.44
1900 2019 6.690530 TGATTTTGGTCCTAATCTTTTGCAG 58.309 36.000 14.48 0.00 33.08 4.41
2018 2139 2.351244 AATCAGCTCCTCGTCGCCA 61.351 57.895 0.00 0.00 0.00 5.69
2037 2158 2.271173 CCTGCAGCAGAGGCATCA 59.729 61.111 24.90 0.00 44.61 3.07
2038 2159 1.152943 CCTGCAGCAGAGGCATCAT 60.153 57.895 24.90 0.00 44.61 2.45
2131 2254 4.722700 GGTGGTGCCGCATCTGGT 62.723 66.667 5.00 0.00 0.00 4.00
2146 2269 4.016706 GGTGGTGGTGGGACGAGG 62.017 72.222 0.00 0.00 0.00 4.63
2343 2706 3.132801 GCTGCTTCCTCTGCTGGC 61.133 66.667 0.00 0.00 0.00 4.85
2361 2779 3.241530 AGAGCGGGGTCAAGCACA 61.242 61.111 0.32 0.00 35.48 4.57
2580 3252 3.842925 GAGGTGGCGGCACTGGAAA 62.843 63.158 36.61 0.00 0.00 3.13
2674 3347 2.469826 GAGGACGTTTTGGCAAAAAGG 58.530 47.619 31.76 25.00 43.52 3.11
2693 3366 1.097547 GCCGTTAGCCACATCAGCAT 61.098 55.000 0.00 0.00 34.35 3.79
2726 3399 5.776744 TCCATCTGTCATAATCGTCATCAG 58.223 41.667 0.00 0.00 0.00 2.90
2772 3445 3.848272 TTTCTGCAAAAGATTAGGCCG 57.152 42.857 0.00 0.00 33.93 6.13
3481 4502 8.493787 AGGATAATTTTAATCGAGTACTCCCT 57.506 34.615 17.23 9.57 0.00 4.20
3482 4503 8.586744 AGGATAATTTTAATCGAGTACTCCCTC 58.413 37.037 17.23 0.00 0.00 4.30
3483 4504 7.818446 GGATAATTTTAATCGAGTACTCCCTCC 59.182 40.741 17.23 3.82 0.00 4.30
3484 4505 4.644103 TTTTAATCGAGTACTCCCTCCG 57.356 45.455 17.23 5.95 0.00 4.63
3485 4506 3.287867 TTAATCGAGTACTCCCTCCGT 57.712 47.619 17.23 0.02 0.00 4.69
3486 4507 1.677942 AATCGAGTACTCCCTCCGTC 58.322 55.000 17.23 0.00 0.00 4.79
3487 4508 0.179023 ATCGAGTACTCCCTCCGTCC 60.179 60.000 17.23 0.00 0.00 4.79
3488 4509 1.823041 CGAGTACTCCCTCCGTCCC 60.823 68.421 17.23 0.00 0.00 4.46
3489 4510 1.305623 GAGTACTCCCTCCGTCCCA 59.694 63.158 12.13 0.00 0.00 4.37
3490 4511 0.106116 GAGTACTCCCTCCGTCCCAT 60.106 60.000 12.13 0.00 0.00 4.00
3491 4512 1.144503 GAGTACTCCCTCCGTCCCATA 59.855 57.143 12.13 0.00 0.00 2.74
3492 4513 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3493 4514 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3494 4515 3.400322 AGTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
3495 4516 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3496 4517 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3497 4518 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3498 4519 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3499 4520 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3500 4521 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3501 4522 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
3502 4523 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
3503 4524 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
3504 4525 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
3505 4526 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
3506 4527 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
3507 4528 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
3508 4529 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
3509 4530 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
3510 4531 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
3511 4532 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
3512 4533 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
3513 4534 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
3516 4537 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
3517 4538 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
3518 4539 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
3519 4540 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
3520 4541 4.982916 AGAGCGTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
3521 4542 4.690122 AGCGTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
3534 4555 4.743644 ACTACACTAGTGTCAAAAACGCTC 59.256 41.667 31.11 0.00 45.69 5.03
3535 4556 3.793559 ACACTAGTGTCAAAAACGCTCT 58.206 40.909 22.95 0.00 45.69 4.09
3536 4557 4.189231 ACACTAGTGTCAAAAACGCTCTT 58.811 39.130 22.95 0.00 45.69 2.85
3537 4558 5.353938 ACACTAGTGTCAAAAACGCTCTTA 58.646 37.500 22.95 0.00 45.69 2.10
3538 4559 5.989777 ACACTAGTGTCAAAAACGCTCTTAT 59.010 36.000 22.95 0.00 45.69 1.73
3539 4560 7.149973 ACACTAGTGTCAAAAACGCTCTTATA 58.850 34.615 22.95 0.00 45.69 0.98
3540 4561 7.817962 ACACTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 22.95 0.00 45.69 0.86
3541 4562 8.656849 CACTAGTGTCAAAAACGCTCTTATATT 58.343 33.333 15.06 0.00 45.69 1.28
3542 4563 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
3545 4566 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
3546 4567 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
3547 4568 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
3548 4569 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
3605 7007 6.041637 TCACTTGTAATACAGTTGAGACCACT 59.958 38.462 0.00 0.00 0.00 4.00
3639 7041 3.630312 TGTCAGCCACCTTTGTTAACTTC 59.370 43.478 7.22 0.00 0.00 3.01
3732 7135 1.738700 GCTGTAGCTGGTCTTCTGCTC 60.739 57.143 0.00 0.00 45.71 4.26
3777 7184 3.067106 GGCTCTTCTGACGTTCATTTGA 58.933 45.455 0.00 0.00 0.00 2.69
3818 7227 6.977502 CACAGGTGACATGTACAAAATTTTGA 59.022 34.615 32.20 14.39 40.55 2.69
3829 7238 4.312443 ACAAAATTTTGAGCAGATGCCAG 58.688 39.130 32.20 6.26 40.66 4.85
3840 7249 2.100916 GCAGATGCCAGAATTGCAAGAT 59.899 45.455 4.94 0.00 42.92 2.40
3842 7251 4.022242 GCAGATGCCAGAATTGCAAGATAT 60.022 41.667 4.94 0.00 42.92 1.63
3843 7252 5.182570 GCAGATGCCAGAATTGCAAGATATA 59.817 40.000 4.94 0.00 42.92 0.86
3844 7253 6.127703 GCAGATGCCAGAATTGCAAGATATAT 60.128 38.462 4.94 0.00 42.92 0.86
3845 7254 7.066645 GCAGATGCCAGAATTGCAAGATATATA 59.933 37.037 4.94 0.00 42.92 0.86
3846 7255 9.121658 CAGATGCCAGAATTGCAAGATATATAT 57.878 33.333 4.94 0.00 42.92 0.86
3849 7258 9.910267 ATGCCAGAATTGCAAGATATATATACA 57.090 29.630 4.94 0.00 42.92 2.29
3850 7259 9.910267 TGCCAGAATTGCAAGATATATATACAT 57.090 29.630 4.94 0.00 35.40 2.29
3931 7340 6.925718 TGACAAACACAGTTTCTCATCTCTAG 59.074 38.462 0.00 0.00 0.00 2.43
4005 7415 8.674607 GGAGTTGACATCGATAAAGGTTTAAAT 58.325 33.333 0.00 0.00 0.00 1.40
4137 7577 2.331132 GCTTGTCTCACAGCAGCCC 61.331 63.158 0.00 0.00 28.36 5.19
4153 7593 5.356751 CAGCAGCCCTTATGTACATTTTGTA 59.643 40.000 14.77 0.00 0.00 2.41
4258 7700 2.931325 TGTTCGACCGGTTATTGCATAC 59.069 45.455 9.42 0.00 0.00 2.39
4331 8097 2.098614 TGAGGTGTGTTGTGTTTGCAT 58.901 42.857 0.00 0.00 0.00 3.96
4345 8111 7.744087 TGTGTTTGCATGTCTAAAGAAGTAT 57.256 32.000 0.00 0.00 0.00 2.12
4354 8226 8.462016 GCATGTCTAAAGAAGTATGATTTGGTT 58.538 33.333 0.00 0.00 0.00 3.67
4539 8417 6.998074 TGACAGTCAAACTTGGATTTCTGTAT 59.002 34.615 0.00 0.00 35.50 2.29
4564 8442 5.446143 TTTTTACGTCAGATGCATGGTTT 57.554 34.783 2.46 0.00 0.00 3.27
4675 8553 2.819608 TCTTGCCTTGCCAAATGTAGTC 59.180 45.455 0.00 0.00 0.00 2.59
4816 8694 3.788227 AGTGCCAAGGTTCATAACTCA 57.212 42.857 0.00 0.00 0.00 3.41
4834 8712 3.837146 ACTCATCAGACTCCACAACTCAT 59.163 43.478 0.00 0.00 0.00 2.90
4891 8769 9.289303 CCAAATGGAAATATTTCTAAACACGAG 57.711 33.333 23.85 9.18 37.35 4.18
4913 8791 7.083858 CGAGCAACCTGATCTTTTTGAAATTA 58.916 34.615 0.00 0.00 29.10 1.40
4965 8843 4.424626 AGCACACACAGATATACAGAACG 58.575 43.478 0.00 0.00 0.00 3.95
5020 8898 6.901081 TTACAAGAGAGACATGTCAGAGAA 57.099 37.500 27.02 7.59 32.58 2.87
5023 8901 6.767456 ACAAGAGAGACATGTCAGAGAATTT 58.233 36.000 27.02 4.07 0.00 1.82
5024 8902 7.222872 ACAAGAGAGACATGTCAGAGAATTTT 58.777 34.615 27.02 3.30 0.00 1.82
5025 8903 7.718753 ACAAGAGAGACATGTCAGAGAATTTTT 59.281 33.333 27.02 2.52 0.00 1.94
5026 8904 7.670009 AGAGAGACATGTCAGAGAATTTTTG 57.330 36.000 27.02 0.00 0.00 2.44
5027 8905 7.448420 AGAGAGACATGTCAGAGAATTTTTGA 58.552 34.615 27.02 0.00 0.00 2.69
5121 9005 2.684881 GAGCGTGACAAAATGGATCCAT 59.315 45.455 22.15 22.15 38.46 3.41
5147 9031 2.233271 CTGGGGTGATGATGGCATAAC 58.767 52.381 0.00 0.00 35.45 1.89
5200 9084 8.393671 TCTAAGACCGGTATCTATTTCTCTTC 57.606 38.462 7.34 0.00 0.00 2.87
5205 9089 5.010213 ACCGGTATCTATTTCTCTTCTGCTC 59.990 44.000 4.49 0.00 0.00 4.26
5306 9190 5.457686 CAGGGAGGGATTTTTATCATGGAA 58.542 41.667 0.00 0.00 0.00 3.53
5499 9384 4.402155 TGCATTGAACTGTTCTTTTGGTCT 59.598 37.500 20.18 0.00 0.00 3.85
5500 9385 4.741676 GCATTGAACTGTTCTTTTGGTCTG 59.258 41.667 20.18 7.97 0.00 3.51
5538 9423 5.426833 AGCTAGATGTACTCCTTGGTTTGAT 59.573 40.000 0.00 0.00 0.00 2.57
5547 9432 2.632512 TCCTTGGTTTGATTTGCTTCCC 59.367 45.455 0.00 0.00 0.00 3.97
5628 9523 2.569404 TCACCCAACCTGCTTTTGTTTT 59.431 40.909 0.00 0.00 0.00 2.43
5698 9594 4.191544 TCCTGATCCATCGATGAAACAAC 58.808 43.478 26.86 11.40 0.00 3.32
5726 9622 3.370840 TCTCAATCTTTCATGGGGTGG 57.629 47.619 0.00 0.00 0.00 4.61
5737 9633 3.189606 TCATGGGGTGGAGTTAACTCAT 58.810 45.455 31.30 16.37 44.60 2.90
5841 9739 3.519913 GGGAGATACTTCTGGACAAGGTT 59.480 47.826 0.00 0.00 30.30 3.50
5876 9774 2.611225 ACTAATGCTACTCCTGCAGC 57.389 50.000 8.66 0.00 44.04 5.25
5879 9777 4.118584 TGCTACTCCTGCAGCAGA 57.881 55.556 24.90 9.04 42.68 4.26
5880 9778 1.895966 TGCTACTCCTGCAGCAGAG 59.104 57.895 24.90 19.61 42.68 3.35
5906 9804 1.494721 TCTTTTCCAGTTCCCTGCAGT 59.505 47.619 13.81 0.00 37.38 4.40
5916 9814 3.901844 AGTTCCCTGCAGTAGAGTTGTTA 59.098 43.478 13.81 0.00 0.00 2.41
6083 9981 0.462581 GGCTCATGTGATGCTTCGGA 60.463 55.000 0.00 0.00 0.00 4.55
6245 10158 2.158667 GGATAGGGTGGTGGTGGTATTG 60.159 54.545 0.00 0.00 0.00 1.90
6246 10159 0.621609 TAGGGTGGTGGTGGTATTGC 59.378 55.000 0.00 0.00 0.00 3.56
6247 10160 1.680989 GGGTGGTGGTGGTATTGCC 60.681 63.158 0.00 0.00 37.90 4.52
6248 10161 1.382629 GGTGGTGGTGGTATTGCCT 59.617 57.895 0.00 0.00 38.35 4.75
6249 10162 0.251608 GGTGGTGGTGGTATTGCCTT 60.252 55.000 0.00 0.00 38.35 4.35
6250 10163 1.173913 GTGGTGGTGGTATTGCCTTC 58.826 55.000 0.00 0.00 38.35 3.46
6251 10164 0.039035 TGGTGGTGGTATTGCCTTCC 59.961 55.000 0.00 0.00 38.35 3.46
6252 10165 0.683179 GGTGGTGGTATTGCCTTCCC 60.683 60.000 0.00 0.00 38.35 3.97
6253 10166 0.331616 GTGGTGGTATTGCCTTCCCT 59.668 55.000 0.00 0.00 38.35 4.20
6254 10167 1.562475 GTGGTGGTATTGCCTTCCCTA 59.438 52.381 0.00 0.00 38.35 3.53
6342 10256 4.876679 GCCAGAGAAACCTTCCAGTAATAC 59.123 45.833 0.00 0.00 0.00 1.89
6380 10294 3.734463 TGAACATCCTAGTTTTGTCGCA 58.266 40.909 0.00 0.00 0.00 5.10
6385 10299 4.213482 ACATCCTAGTTTTGTCGCAGTTTC 59.787 41.667 0.00 0.00 0.00 2.78
6435 10352 3.251729 CAGGCATATCTTTGGGTCGATTG 59.748 47.826 0.00 0.00 0.00 2.67
6674 10595 2.224018 TGCAACCACATTCCAAAAGCTC 60.224 45.455 0.00 0.00 0.00 4.09
6696 10617 6.098838 GCTCCAGGGATCTTCCAAAAATAAAT 59.901 38.462 0.00 0.00 38.64 1.40
6797 11097 1.984570 CTTCTCTCTCCCACCGCCA 60.985 63.158 0.00 0.00 0.00 5.69
6860 11163 6.922980 TGTACTGTTCGTATTCTTTTCTCG 57.077 37.500 0.00 0.00 0.00 4.04
6925 11230 8.237811 AGTGATCTTTGTCAAATTGGTAAAGT 57.762 30.769 16.35 8.75 31.95 2.66
6969 11274 1.673033 CGCGATTGTTGAGAGGGTCTT 60.673 52.381 0.00 0.00 0.00 3.01
6984 11289 2.956385 GGGTCTTTCCTATGGGTACCGA 60.956 54.545 5.65 1.31 44.74 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.614413 ACAAGAGGGAAGAGTGTCGTC 59.386 52.381 0.00 0.00 0.00 4.20
2 3 1.705873 ACAAGAGGGAAGAGTGTCGT 58.294 50.000 0.00 0.00 0.00 4.34
3 4 2.408050 CAACAAGAGGGAAGAGTGTCG 58.592 52.381 0.00 0.00 0.00 4.35
4 5 2.147150 GCAACAAGAGGGAAGAGTGTC 58.853 52.381 0.00 0.00 0.00 3.67
5 6 1.771255 AGCAACAAGAGGGAAGAGTGT 59.229 47.619 0.00 0.00 0.00 3.55
6 7 2.557920 AGCAACAAGAGGGAAGAGTG 57.442 50.000 0.00 0.00 0.00 3.51
7 8 3.620966 GCATAGCAACAAGAGGGAAGAGT 60.621 47.826 0.00 0.00 0.00 3.24
8 9 2.941720 GCATAGCAACAAGAGGGAAGAG 59.058 50.000 0.00 0.00 0.00 2.85
9 10 2.305635 TGCATAGCAACAAGAGGGAAGA 59.694 45.455 0.00 0.00 34.76 2.87
10 11 2.715046 TGCATAGCAACAAGAGGGAAG 58.285 47.619 0.00 0.00 34.76 3.46
11 12 2.877097 TGCATAGCAACAAGAGGGAA 57.123 45.000 0.00 0.00 34.76 3.97
12 13 2.239402 TGATGCATAGCAACAAGAGGGA 59.761 45.455 0.00 0.00 43.62 4.20
13 14 2.357009 GTGATGCATAGCAACAAGAGGG 59.643 50.000 0.00 0.00 42.49 4.30
14 15 2.357009 GGTGATGCATAGCAACAAGAGG 59.643 50.000 0.00 0.00 42.49 3.69
15 16 3.011818 TGGTGATGCATAGCAACAAGAG 58.988 45.455 0.00 0.00 42.49 2.85
16 17 3.070476 TGGTGATGCATAGCAACAAGA 57.930 42.857 0.00 0.00 42.49 3.02
17 18 3.379057 TCATGGTGATGCATAGCAACAAG 59.621 43.478 9.90 6.31 44.04 3.16
18 19 3.354467 TCATGGTGATGCATAGCAACAA 58.646 40.909 9.90 0.00 44.04 2.83
19 20 3.002038 TCATGGTGATGCATAGCAACA 57.998 42.857 8.42 8.42 45.07 3.33
20 21 4.579454 AATCATGGTGATGCATAGCAAC 57.421 40.909 0.00 0.00 43.62 4.17
21 22 5.353111 CAAAATCATGGTGATGCATAGCAA 58.647 37.500 0.00 0.00 43.62 3.91
22 23 4.738243 GCAAAATCATGGTGATGCATAGCA 60.738 41.667 0.00 4.86 44.86 3.49
23 24 3.739300 GCAAAATCATGGTGATGCATAGC 59.261 43.478 0.00 0.00 37.15 2.97
24 25 4.939271 TGCAAAATCATGGTGATGCATAG 58.061 39.130 13.34 0.00 35.67 2.23
25 26 5.163395 ACATGCAAAATCATGGTGATGCATA 60.163 36.000 23.71 5.41 44.23 3.14
26 27 3.897141 TGCAAAATCATGGTGATGCAT 57.103 38.095 13.34 0.00 35.67 3.96
27 28 3.055747 ACATGCAAAATCATGGTGATGCA 60.056 39.130 18.10 18.10 46.02 3.96
28 29 3.308595 CACATGCAAAATCATGGTGATGC 59.691 43.478 8.84 8.84 46.02 3.91
29 30 3.308595 GCACATGCAAAATCATGGTGATG 59.691 43.478 8.38 0.00 46.02 3.07
30 31 3.527533 GCACATGCAAAATCATGGTGAT 58.472 40.909 8.38 0.00 46.02 3.06
31 32 2.671632 CGCACATGCAAAATCATGGTGA 60.672 45.455 4.49 0.00 46.02 4.02
32 33 1.656594 CGCACATGCAAAATCATGGTG 59.343 47.619 4.49 0.00 46.02 4.17
33 34 1.273048 ACGCACATGCAAAATCATGGT 59.727 42.857 4.49 0.00 46.02 3.55
34 35 1.999048 ACGCACATGCAAAATCATGG 58.001 45.000 4.49 0.00 46.02 3.66
35 36 3.110358 CCTACGCACATGCAAAATCATG 58.890 45.455 4.49 2.54 46.86 3.07
36 37 3.016031 TCCTACGCACATGCAAAATCAT 58.984 40.909 4.49 0.00 42.21 2.45
37 38 2.161410 GTCCTACGCACATGCAAAATCA 59.839 45.455 4.49 0.00 42.21 2.57
38 39 2.420022 AGTCCTACGCACATGCAAAATC 59.580 45.455 4.49 0.00 42.21 2.17
39 40 2.436417 AGTCCTACGCACATGCAAAAT 58.564 42.857 4.49 0.00 42.21 1.82
40 41 1.890876 AGTCCTACGCACATGCAAAA 58.109 45.000 4.49 0.00 42.21 2.44
41 42 1.890876 AAGTCCTACGCACATGCAAA 58.109 45.000 4.49 0.00 42.21 3.68
42 43 1.890876 AAAGTCCTACGCACATGCAA 58.109 45.000 4.49 0.00 42.21 4.08
43 44 1.890876 AAAAGTCCTACGCACATGCA 58.109 45.000 4.49 0.00 42.21 3.96
44 45 2.989422 AAAAAGTCCTACGCACATGC 57.011 45.000 0.00 0.00 37.78 4.06
60 61 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
61 62 6.546772 AGTTGGGGAACGTAGTAATTTCAAAA 59.453 34.615 0.00 0.00 45.00 2.44
62 63 6.063404 AGTTGGGGAACGTAGTAATTTCAAA 58.937 36.000 0.00 0.00 45.00 2.69
63 64 5.623169 AGTTGGGGAACGTAGTAATTTCAA 58.377 37.500 0.00 0.00 45.00 2.69
64 65 5.231702 AGTTGGGGAACGTAGTAATTTCA 57.768 39.130 0.00 0.00 45.00 2.69
65 66 6.016860 ACAAAGTTGGGGAACGTAGTAATTTC 60.017 38.462 0.00 0.00 45.00 2.17
66 67 5.829391 ACAAAGTTGGGGAACGTAGTAATTT 59.171 36.000 0.00 0.00 45.00 1.82
67 68 5.379187 ACAAAGTTGGGGAACGTAGTAATT 58.621 37.500 0.00 0.00 45.00 1.40
68 69 4.976864 ACAAAGTTGGGGAACGTAGTAAT 58.023 39.130 0.00 0.00 45.00 1.89
69 70 4.420522 ACAAAGTTGGGGAACGTAGTAA 57.579 40.909 0.00 0.00 45.00 2.24
70 71 4.420522 AACAAAGTTGGGGAACGTAGTA 57.579 40.909 0.00 0.00 45.00 1.82
72 73 4.212636 CAGTAACAAAGTTGGGGAACGTAG 59.787 45.833 0.00 0.00 0.00 3.51
73 74 4.128643 CAGTAACAAAGTTGGGGAACGTA 58.871 43.478 0.00 0.00 0.00 3.57
74 75 2.946990 CAGTAACAAAGTTGGGGAACGT 59.053 45.455 0.00 0.00 0.00 3.99
75 76 2.946990 ACAGTAACAAAGTTGGGGAACG 59.053 45.455 0.00 0.00 0.00 3.95
76 77 6.644248 ATTACAGTAACAAAGTTGGGGAAC 57.356 37.500 0.00 0.00 0.00 3.62
77 78 8.219178 TCTAATTACAGTAACAAAGTTGGGGAA 58.781 33.333 0.00 0.00 0.00 3.97
78 79 7.747690 TCTAATTACAGTAACAAAGTTGGGGA 58.252 34.615 0.00 0.00 0.00 4.81
79 80 7.120726 CCTCTAATTACAGTAACAAAGTTGGGG 59.879 40.741 0.00 0.00 0.00 4.96
80 81 7.881232 TCCTCTAATTACAGTAACAAAGTTGGG 59.119 37.037 0.00 0.40 0.00 4.12
81 82 8.842358 TCCTCTAATTACAGTAACAAAGTTGG 57.158 34.615 0.00 2.36 0.00 3.77
82 83 8.936864 CCTCCTCTAATTACAGTAACAAAGTTG 58.063 37.037 0.00 0.00 0.00 3.16
83 84 8.877195 TCCTCCTCTAATTACAGTAACAAAGTT 58.123 33.333 0.00 0.00 0.00 2.66
84 85 8.431910 TCCTCCTCTAATTACAGTAACAAAGT 57.568 34.615 0.00 0.00 0.00 2.66
113 114 0.961019 TCTCAATGCAGCCAACCAAC 59.039 50.000 0.00 0.00 0.00 3.77
169 170 4.512944 CCAGATCGTTCACTTCCATTATGG 59.487 45.833 4.57 4.57 39.43 2.74
173 174 2.305927 ACCCAGATCGTTCACTTCCATT 59.694 45.455 0.00 0.00 0.00 3.16
190 191 5.698104 TGGAGACTAATCTTATACGACCCA 58.302 41.667 0.00 0.00 34.34 4.51
278 279 2.130272 ATAGGATCCGCTCGCATCTA 57.870 50.000 5.98 0.00 0.00 1.98
297 298 7.955918 ACTGTGCATGATAATGATACACTCTA 58.044 34.615 0.00 0.00 0.00 2.43
311 312 7.512130 TCCTATGAAGAATTACTGTGCATGAT 58.488 34.615 0.00 0.00 0.00 2.45
314 315 7.994911 TCATTCCTATGAAGAATTACTGTGCAT 59.005 33.333 0.00 0.00 37.83 3.96
333 334 3.887716 GCCAGCTGATAATGTTCATTCCT 59.112 43.478 17.39 0.00 0.00 3.36
339 353 7.253750 CGTTTAATTTGCCAGCTGATAATGTTC 60.254 37.037 17.39 3.62 0.00 3.18
369 383 5.574055 AGCAAACGCAATGTTCATGAATTAG 59.426 36.000 12.12 3.81 40.84 1.73
371 385 4.309099 AGCAAACGCAATGTTCATGAATT 58.691 34.783 12.12 0.00 40.84 2.17
426 440 2.073816 ACTAGGAATTTGTTCGTGCCG 58.926 47.619 0.00 0.00 0.00 5.69
470 484 7.427606 CGATGCTTTGCACTATTTCTTTAGAAG 59.572 37.037 0.00 0.00 43.04 2.85
472 486 6.675486 GCGATGCTTTGCACTATTTCTTTAGA 60.675 38.462 6.94 0.00 43.04 2.10
508 522 5.831525 TCGTACCAAGATTTAGAGGAGCATA 59.168 40.000 0.00 0.00 0.00 3.14
509 523 4.649674 TCGTACCAAGATTTAGAGGAGCAT 59.350 41.667 0.00 0.00 0.00 3.79
520 534 0.611714 ACCGCCTTCGTACCAAGATT 59.388 50.000 1.33 0.00 0.00 2.40
570 584 3.101437 TGCCTAACATCGTCCTCCTTTA 58.899 45.455 0.00 0.00 0.00 1.85
571 585 1.906574 TGCCTAACATCGTCCTCCTTT 59.093 47.619 0.00 0.00 0.00 3.11
572 586 1.568504 TGCCTAACATCGTCCTCCTT 58.431 50.000 0.00 0.00 0.00 3.36
585 599 1.526455 ACGCCCAAACGTTGCCTAA 60.526 52.632 0.00 0.00 45.75 2.69
587 601 3.591835 CACGCCCAAACGTTGCCT 61.592 61.111 0.00 0.00 45.75 4.75
591 605 3.894947 GTGCCACGCCCAAACGTT 61.895 61.111 0.00 0.00 45.75 3.99
703 717 9.807386 GACAAATGTATTACAAAGAGTACACAC 57.193 33.333 0.00 0.00 33.24 3.82
766 780 2.431782 AGGCATGTGCACTGTTTCTTTT 59.568 40.909 19.41 0.00 44.36 2.27
987 1007 1.810532 GACCATCCTCTTCGTCGCT 59.189 57.895 0.00 0.00 0.00 4.93
1271 1370 3.054287 TCAACAAATAACTCCCCGGCATA 60.054 43.478 0.00 0.00 0.00 3.14
1290 1389 4.751098 GCAATCTCCAGCAAAACATTTCAA 59.249 37.500 0.00 0.00 0.00 2.69
1298 1397 2.161855 ACATCGCAATCTCCAGCAAAA 58.838 42.857 0.00 0.00 0.00 2.44
1345 1444 9.988350 CTTTCAACTAAGCAACATAATTCGTAT 57.012 29.630 0.00 0.00 0.00 3.06
1346 1445 8.995220 ACTTTCAACTAAGCAACATAATTCGTA 58.005 29.630 0.00 0.00 0.00 3.43
1395 1494 1.702182 TTCATCAAACAGCTTGGGCA 58.298 45.000 0.00 0.00 41.70 5.36
1425 1524 2.363680 ACACAAATCAATGCCGAAACCA 59.636 40.909 0.00 0.00 0.00 3.67
1582 1683 6.834168 AACACCAAAATACCCAACAGATAG 57.166 37.500 0.00 0.00 0.00 2.08
1615 1716 7.224167 GTCTAACTAATGCTATGGCGTAAAACT 59.776 37.037 0.00 0.00 42.25 2.66
1616 1717 7.010738 TGTCTAACTAATGCTATGGCGTAAAAC 59.989 37.037 0.00 0.00 42.25 2.43
1770 1888 6.053005 GCCAATAGCATTACAGTAACACCTA 58.947 40.000 0.00 0.00 42.97 3.08
1787 1906 2.032550 CGCAATTCACTCCTGCCAATAG 59.967 50.000 0.00 0.00 32.27 1.73
1788 1907 2.016318 CGCAATTCACTCCTGCCAATA 58.984 47.619 0.00 0.00 32.27 1.90
1789 1908 0.813184 CGCAATTCACTCCTGCCAAT 59.187 50.000 0.00 0.00 32.27 3.16
1790 1909 0.250684 TCGCAATTCACTCCTGCCAA 60.251 50.000 0.00 0.00 32.27 4.52
1791 1910 0.250684 TTCGCAATTCACTCCTGCCA 60.251 50.000 0.00 0.00 32.27 4.92
1792 1911 0.881118 TTTCGCAATTCACTCCTGCC 59.119 50.000 0.00 0.00 32.27 4.85
1793 1912 2.704725 TTTTCGCAATTCACTCCTGC 57.295 45.000 0.00 0.00 0.00 4.85
1794 1913 3.243367 TGGTTTTTCGCAATTCACTCCTG 60.243 43.478 0.00 0.00 0.00 3.86
1795 1914 2.955660 TGGTTTTTCGCAATTCACTCCT 59.044 40.909 0.00 0.00 0.00 3.69
1862 1981 4.101430 ACCAAAATCAGTGTTTTCTGGCAT 59.899 37.500 18.15 6.54 36.25 4.40
1883 2002 5.920840 GTGTTTTCTGCAAAAGATTAGGACC 59.079 40.000 0.00 0.00 33.93 4.46
1900 2019 6.129194 GCATAAAACGGTTGATCAGTGTTTTC 60.129 38.462 25.18 14.91 40.67 2.29
2037 2158 1.736586 GACGAGGACCATGAGCGAT 59.263 57.895 0.00 0.00 0.00 4.58
2038 2159 2.761195 CGACGAGGACCATGAGCGA 61.761 63.158 0.00 0.00 0.00 4.93
2131 2254 2.920912 GTCCTCGTCCCACCACCA 60.921 66.667 0.00 0.00 0.00 4.17
2146 2269 3.827898 CCGCCTCGTCCTCTGGTC 61.828 72.222 0.00 0.00 0.00 4.02
2243 2367 2.738521 GCAAGCAGCGACCTCGAA 60.739 61.111 0.00 0.00 43.02 3.71
2343 2706 2.743928 GTGCTTGACCCCGCTCTG 60.744 66.667 0.00 0.00 0.00 3.35
2346 2709 4.643387 GGTGTGCTTGACCCCGCT 62.643 66.667 0.00 0.00 0.00 5.52
2361 2779 3.865929 CTCAGGCACAAGCGACGGT 62.866 63.158 0.00 0.00 43.41 4.83
2365 2783 2.357881 CAGCTCAGGCACAAGCGA 60.358 61.111 0.00 0.00 42.88 4.93
2605 3277 0.031616 CTACCCTCTCCCTGCTCCTT 60.032 60.000 0.00 0.00 0.00 3.36
2648 3321 1.758592 CCAAAACGTCCTCCCCTCA 59.241 57.895 0.00 0.00 0.00 3.86
2674 3347 1.097547 ATGCTGATGTGGCTAACGGC 61.098 55.000 0.00 0.00 40.90 5.68
2772 3445 2.095718 GTGCCCGAAAACACTGATTCTC 60.096 50.000 0.00 0.00 33.92 2.87
2897 3570 3.308595 TCTGTCAAAACAAGTACGTGCAG 59.691 43.478 8.83 7.04 34.24 4.41
3059 3735 7.849804 TGAAGTTATCAGCTAAGATTGGTTC 57.150 36.000 0.00 0.00 33.04 3.62
3259 3937 8.680903 GTCATGTGAATGACCAGAAGATTATTT 58.319 33.333 7.47 0.00 43.75 1.40
3432 4453 7.331934 CCTAACGTGACCATATGGATAAATCAG 59.668 40.741 28.77 15.45 38.94 2.90
3441 4462 7.979444 AAATTATCCTAACGTGACCATATGG 57.021 36.000 20.68 20.68 42.17 2.74
3476 4497 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3477 4498 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
3478 4499 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
3479 4500 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
3480 4501 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
3481 4502 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
3482 4503 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
3483 4504 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
3484 4505 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
3485 4506 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
3486 4507 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
3487 4508 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
3490 4511 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
3491 4512 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
3492 4513 7.817962 AGTGTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 45.69 0.86
3493 4514 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
3494 4515 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
3495 4516 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
3496 4517 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
3497 4518 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
3498 4519 4.743644 ACTAGTGTAGTGTCAAAAACGCTC 59.256 41.667 0.00 0.00 45.69 5.03
3511 4532 4.690122 AGCGTTTTTGACACTAGTGTAGT 58.310 39.130 27.98 6.32 45.05 2.73
3512 4533 4.982916 AGAGCGTTTTTGACACTAGTGTAG 59.017 41.667 27.98 13.76 45.05 2.74
3513 4534 4.940463 AGAGCGTTTTTGACACTAGTGTA 58.060 39.130 27.98 11.50 45.05 2.90
3515 4536 4.795970 AAGAGCGTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
3516 4537 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
3519 4540 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
3520 4541 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
3521 4542 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
3522 4543 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
3523 4544 7.771361 TGTCCCATAATATAAGAGCGTTTTTGA 59.229 33.333 0.00 0.00 0.00 2.69
3524 4545 7.925993 TGTCCCATAATATAAGAGCGTTTTTG 58.074 34.615 0.00 0.00 0.00 2.44
3525 4546 7.990886 TCTGTCCCATAATATAAGAGCGTTTTT 59.009 33.333 0.00 0.00 0.00 1.94
3526 4547 7.506114 TCTGTCCCATAATATAAGAGCGTTTT 58.494 34.615 0.00 0.00 0.00 2.43
3527 4548 7.062749 TCTGTCCCATAATATAAGAGCGTTT 57.937 36.000 0.00 0.00 0.00 3.60
3528 4549 6.295349 CCTCTGTCCCATAATATAAGAGCGTT 60.295 42.308 0.00 0.00 0.00 4.84
3529 4550 5.186021 CCTCTGTCCCATAATATAAGAGCGT 59.814 44.000 0.00 0.00 0.00 5.07
3530 4551 5.394663 CCCTCTGTCCCATAATATAAGAGCG 60.395 48.000 0.00 0.00 0.00 5.03
3531 4552 5.721960 TCCCTCTGTCCCATAATATAAGAGC 59.278 44.000 0.00 0.00 0.00 4.09
3532 4553 6.957020 ACTCCCTCTGTCCCATAATATAAGAG 59.043 42.308 0.00 0.00 0.00 2.85
3533 4554 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
3534 4555 8.700051 CATACTCCCTCTGTCCCATAATATAAG 58.300 40.741 0.00 0.00 0.00 1.73
3535 4556 8.184249 ACATACTCCCTCTGTCCCATAATATAA 58.816 37.037 0.00 0.00 0.00 0.98
3536 4557 7.619698 CACATACTCCCTCTGTCCCATAATATA 59.380 40.741 0.00 0.00 0.00 0.86
3537 4558 6.441924 CACATACTCCCTCTGTCCCATAATAT 59.558 42.308 0.00 0.00 0.00 1.28
3538 4559 5.780282 CACATACTCCCTCTGTCCCATAATA 59.220 44.000 0.00 0.00 0.00 0.98
3539 4560 4.594920 CACATACTCCCTCTGTCCCATAAT 59.405 45.833 0.00 0.00 0.00 1.28
3540 4561 3.967326 CACATACTCCCTCTGTCCCATAA 59.033 47.826 0.00 0.00 0.00 1.90
3541 4562 3.576861 CACATACTCCCTCTGTCCCATA 58.423 50.000 0.00 0.00 0.00 2.74
3542 4563 2.402564 CACATACTCCCTCTGTCCCAT 58.597 52.381 0.00 0.00 0.00 4.00
3543 4564 1.866015 CACATACTCCCTCTGTCCCA 58.134 55.000 0.00 0.00 0.00 4.37
3544 4565 0.466124 GCACATACTCCCTCTGTCCC 59.534 60.000 0.00 0.00 0.00 4.46
3545 4566 0.466124 GGCACATACTCCCTCTGTCC 59.534 60.000 0.00 0.00 0.00 4.02
3546 4567 1.195115 TGGCACATACTCCCTCTGTC 58.805 55.000 0.00 0.00 0.00 3.51
3547 4568 3.399234 TGGCACATACTCCCTCTGT 57.601 52.632 0.00 0.00 0.00 3.41
3669 7072 2.315176 TGGTCAAGGGTTGTCAAATGG 58.685 47.619 0.00 0.00 0.00 3.16
3732 7135 7.361542 GCCACTAATCACTGCATAGAATAATGG 60.362 40.741 6.70 6.70 0.00 3.16
3777 7184 8.267183 TGTCACCTGTGATGTATTGATTTCTAT 58.733 33.333 2.91 0.00 42.18 1.98
3818 7227 1.476891 CTTGCAATTCTGGCATCTGCT 59.523 47.619 0.00 0.00 41.58 4.24
3931 7340 2.289547 TCGCTGCACAAGGTAAGAAAAC 59.710 45.455 0.00 0.00 0.00 2.43
4052 7492 6.010219 ACCAGGTACTTCATGCACTAAAAAT 58.990 36.000 0.00 0.00 34.60 1.82
4153 7593 9.195411 CAGCACACAACATTATACAAGAAAAAT 57.805 29.630 0.00 0.00 0.00 1.82
4161 7601 5.994668 TGTTCTCAGCACACAACATTATACA 59.005 36.000 0.00 0.00 0.00 2.29
4162 7602 6.480524 TGTTCTCAGCACACAACATTATAC 57.519 37.500 0.00 0.00 0.00 1.47
4228 7669 1.171308 CCGGTCGAACAGGACTAGAA 58.829 55.000 0.00 0.00 35.32 2.10
4258 7700 1.072331 ACTAACAACACTGAGCTGGGG 59.928 52.381 0.00 0.00 0.00 4.96
4331 8097 8.160765 TCCAACCAAATCATACTTCTTTAGACA 58.839 33.333 0.00 0.00 0.00 3.41
4544 8422 3.818210 ACAAACCATGCATCTGACGTAAA 59.182 39.130 0.00 0.00 0.00 2.01
4546 8424 3.052455 ACAAACCATGCATCTGACGTA 57.948 42.857 0.00 0.00 0.00 3.57
4619 8497 8.101419 ACATTCCGAAACTAGAAGGAACTATTT 58.899 33.333 12.47 0.00 44.41 1.40
4631 8509 5.418310 ACACACAAACATTCCGAAACTAG 57.582 39.130 0.00 0.00 0.00 2.57
4675 8553 1.042559 AACCCAACACAGCCAACCAG 61.043 55.000 0.00 0.00 0.00 4.00
4816 8694 4.029520 AGCTATGAGTTGTGGAGTCTGAT 58.970 43.478 0.00 0.00 0.00 2.90
4834 8712 2.515854 ACCACTTCTTCTCGACAGCTA 58.484 47.619 0.00 0.00 0.00 3.32
4891 8769 8.992835 AGATAATTTCAAAAAGATCAGGTTGC 57.007 30.769 0.00 0.00 0.00 4.17
5121 9005 1.561076 CCATCATCACCCCAGTTCAGA 59.439 52.381 0.00 0.00 0.00 3.27
5147 9031 5.491070 TCCATATCTTCACAAACAGAGTGG 58.509 41.667 0.00 0.00 37.58 4.00
5200 9084 4.347583 AGAGATCCAATTTAGGGAGAGCAG 59.652 45.833 0.00 0.00 37.96 4.24
5205 9089 4.164988 ACCACAGAGATCCAATTTAGGGAG 59.835 45.833 0.00 0.00 37.96 4.30
5306 9190 0.763223 ACGAGGTCCAAGGTTGAGGT 60.763 55.000 0.00 0.00 0.00 3.85
5499 9384 3.462982 TCTAGCTTTGAAACGAGCAACA 58.537 40.909 0.00 0.00 41.31 3.33
5500 9385 4.083802 ACATCTAGCTTTGAAACGAGCAAC 60.084 41.667 0.00 0.00 41.31 4.17
5538 9423 2.159382 GATGAAAGACCGGGAAGCAAA 58.841 47.619 6.32 0.00 0.00 3.68
5628 9523 4.080413 TGCATAAGATTGTGTGATCAGGGA 60.080 41.667 0.00 0.00 0.00 4.20
5698 9594 7.559170 ACCCCATGAAAGATTGAGAAGAAATAG 59.441 37.037 0.00 0.00 0.00 1.73
5726 9622 5.299782 AGGACAGGACGATATGAGTTAACTC 59.700 44.000 25.73 25.73 43.15 3.01
5759 9657 3.303938 TCTTTGGCAACCTGAAATCCAA 58.696 40.909 0.00 0.00 35.25 3.53
5841 9739 4.921515 GCATTAGTTGCCGATATAGAACGA 59.078 41.667 0.00 0.00 46.15 3.85
5865 9763 2.739943 ACATACTCTGCTGCAGGAGTA 58.260 47.619 31.17 27.99 34.87 2.59
5866 9764 1.566211 ACATACTCTGCTGCAGGAGT 58.434 50.000 31.17 26.95 34.87 3.85
5867 9765 2.168106 AGAACATACTCTGCTGCAGGAG 59.832 50.000 27.83 27.83 34.56 3.69
5868 9766 2.182827 AGAACATACTCTGCTGCAGGA 58.817 47.619 27.79 12.70 31.51 3.86
5869 9767 2.687700 AGAACATACTCTGCTGCAGG 57.312 50.000 27.79 20.25 31.51 4.85
5870 9768 4.142730 GGAAAAGAACATACTCTGCTGCAG 60.143 45.833 23.31 23.31 0.00 4.41
5871 9769 3.753272 GGAAAAGAACATACTCTGCTGCA 59.247 43.478 0.88 0.88 0.00 4.41
5872 9770 3.753272 TGGAAAAGAACATACTCTGCTGC 59.247 43.478 0.00 0.00 0.00 5.25
5873 9771 4.999950 ACTGGAAAAGAACATACTCTGCTG 59.000 41.667 0.00 0.00 0.00 4.41
5874 9772 5.234466 ACTGGAAAAGAACATACTCTGCT 57.766 39.130 0.00 0.00 0.00 4.24
5875 9773 5.106515 GGAACTGGAAAAGAACATACTCTGC 60.107 44.000 0.00 0.00 0.00 4.26
5876 9774 5.412904 GGGAACTGGAAAAGAACATACTCTG 59.587 44.000 0.00 0.00 0.00 3.35
5877 9775 5.310857 AGGGAACTGGAAAAGAACATACTCT 59.689 40.000 0.00 0.00 41.13 3.24
5878 9776 5.561679 AGGGAACTGGAAAAGAACATACTC 58.438 41.667 0.00 0.00 41.13 2.59
5879 9777 5.584551 AGGGAACTGGAAAAGAACATACT 57.415 39.130 0.00 0.00 41.13 2.12
5906 9804 6.597672 CCACTGCATGGTTTATAACAACTCTA 59.402 38.462 0.00 0.00 44.46 2.43
6083 9981 0.240945 GCAGCACCAAACTTACGCAT 59.759 50.000 0.00 0.00 0.00 4.73
6156 10054 5.321983 GCTAATCTAGCGTCATGTGAAAG 57.678 43.478 0.00 0.00 42.62 2.62
6247 10160 8.959705 AATTATCGAAAACTACCTTAGGGAAG 57.040 34.615 2.32 2.10 36.25 3.46
6248 10161 9.743581 AAAATTATCGAAAACTACCTTAGGGAA 57.256 29.630 2.32 0.00 36.25 3.97
6249 10162 9.169592 CAAAATTATCGAAAACTACCTTAGGGA 57.830 33.333 2.32 0.00 36.25 4.20
6250 10163 8.953313 ACAAAATTATCGAAAACTACCTTAGGG 58.047 33.333 2.32 0.00 38.88 3.53
6251 10164 9.983804 GACAAAATTATCGAAAACTACCTTAGG 57.016 33.333 0.00 0.00 0.00 2.69
6254 10167 9.280174 TCTGACAAAATTATCGAAAACTACCTT 57.720 29.630 0.00 0.00 0.00 3.50
6380 10294 5.852282 AAACTGGTAGCAATTGTGAAACT 57.148 34.783 7.40 0.00 38.04 2.66
6385 10299 5.545658 ACGATAAACTGGTAGCAATTGTG 57.454 39.130 7.40 0.00 0.00 3.33
6435 10352 7.201565 GCAACTATAGTGTCTGAAAGTTGATCC 60.202 40.741 15.15 0.00 44.03 3.36
6531 10451 1.264749 ATTGCTCGTGGAGTGGGCTA 61.265 55.000 0.00 0.00 31.39 3.93
6635 10556 2.094675 GCATCTTCTTGCTTTGGGCTA 58.905 47.619 0.00 0.00 42.39 3.93
6674 10595 9.200817 TCTTATTTATTTTTGGAAGATCCCTGG 57.799 33.333 0.00 0.00 35.03 4.45
6860 11163 9.798994 CGGGTTGGTGACTAGTATATATATTTC 57.201 37.037 0.00 0.00 0.00 2.17
6879 11182 1.446445 CATGCATTGCACGGGTTGG 60.446 57.895 14.66 0.00 43.04 3.77
6925 11230 1.418264 TCCAATGTTCGGGTTGAGACA 59.582 47.619 0.00 0.00 0.00 3.41
6969 11274 0.683828 TGCGTCGGTACCCATAGGAA 60.684 55.000 6.25 0.00 36.73 3.36
6984 11289 2.252072 ATTATCAGTGGCGGGTGCGT 62.252 55.000 0.00 0.00 44.10 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.