Multiple sequence alignment - TraesCS7B01G164600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G164600 chr7B 100.000 5339 0 0 1 5339 227279687 227285025 0.000000e+00 9860.0
1 TraesCS7B01G164600 chr7B 99.291 141 1 0 2881 3021 671719093 671719233 6.860000e-64 255.0
2 TraesCS7B01G164600 chr7B 85.294 136 18 2 925 1059 243752253 243752119 7.210000e-29 139.0
3 TraesCS7B01G164600 chr7B 93.548 62 3 1 165 225 619084757 619084818 2.050000e-14 91.6
4 TraesCS7B01G164600 chr7D 94.786 1496 55 9 1399 2882 250669802 250671286 0.000000e+00 2309.0
5 TraesCS7B01G164600 chr7D 90.448 1675 78 35 3667 5319 250671970 250673584 0.000000e+00 2132.0
6 TraesCS7B01G164600 chr7D 89.728 1324 65 33 1 1307 250668288 250669557 0.000000e+00 1626.0
7 TraesCS7B01G164600 chr7D 93.027 631 25 5 3021 3650 250671283 250671895 0.000000e+00 904.0
8 TraesCS7B01G164600 chr7D 100.000 43 0 0 1306 1348 250669588 250669630 4.430000e-11 80.5
9 TraesCS7B01G164600 chr7D 94.595 37 1 1 1348 1383 250669645 250669681 7.470000e-04 56.5
10 TraesCS7B01G164600 chr7A 94.631 1490 59 7 1404 2882 270764630 270763151 0.000000e+00 2289.0
11 TraesCS7B01G164600 chr7A 91.768 1069 53 18 3667 4717 270762442 270761391 0.000000e+00 1454.0
12 TraesCS7B01G164600 chr7A 88.496 1017 58 28 296 1307 270773789 270772827 0.000000e+00 1175.0
13 TraesCS7B01G164600 chr7A 93.692 650 30 4 3021 3669 270763154 270762515 0.000000e+00 963.0
14 TraesCS7B01G164600 chr7A 86.644 292 32 7 11 299 270774349 270774062 3.100000e-82 316.0
15 TraesCS7B01G164600 chr7A 94.554 202 7 4 4729 4928 270761223 270761024 5.190000e-80 309.0
16 TraesCS7B01G164600 chr7A 90.948 232 15 2 5090 5319 270760956 270760729 1.870000e-79 307.0
17 TraesCS7B01G164600 chr7A 85.417 144 18 3 918 1059 233815360 233815218 4.310000e-31 147.0
18 TraesCS7B01G164600 chr7A 100.000 43 0 0 1306 1348 270772796 270772754 4.430000e-11 80.5
19 TraesCS7B01G164600 chr7A 92.500 40 2 1 1348 1386 270772739 270772700 7.470000e-04 56.5
20 TraesCS7B01G164600 chr5D 85.714 287 41 0 2489 2775 399947620 399947906 2.420000e-78 303.0
21 TraesCS7B01G164600 chr5D 84.106 151 24 0 2208 2358 399947352 399947502 4.310000e-31 147.0
22 TraesCS7B01G164600 chr5D 84.375 96 9 5 165 255 423868427 423868333 7.360000e-14 89.8
23 TraesCS7B01G164600 chr5D 81.373 102 12 5 159 255 423868312 423868411 5.730000e-10 76.8
24 TraesCS7B01G164600 chr5A 85.714 287 41 0 2489 2775 505504383 505504669 2.420000e-78 303.0
25 TraesCS7B01G164600 chr5A 78.044 501 81 21 1876 2357 505503769 505504259 6.770000e-74 289.0
26 TraesCS7B01G164600 chr5A 85.263 95 11 2 164 255 510887265 510887171 1.580000e-15 95.3
27 TraesCS7B01G164600 chr5B 85.366 287 42 0 2489 2775 479827923 479828209 1.120000e-76 298.0
28 TraesCS7B01G164600 chr5B 77.535 503 83 19 1876 2358 479827311 479827803 5.270000e-70 276.0
29 TraesCS7B01G164600 chr4B 97.931 145 2 1 2881 3024 45773779 45773635 3.190000e-62 250.0
30 TraesCS7B01G164600 chr4B 96.599 147 5 0 2879 3025 514604143 514603997 1.490000e-60 244.0
31 TraesCS7B01G164600 chr4B 85.417 144 18 3 918 1059 357622538 357622680 4.310000e-31 147.0
32 TraesCS7B01G164600 chr4B 85.211 142 18 3 920 1059 476630448 476630588 5.570000e-30 143.0
33 TraesCS7B01G164600 chr6B 97.241 145 4 0 2881 3025 555720941 555721085 4.130000e-61 246.0
34 TraesCS7B01G164600 chr3A 96.575 146 5 0 2879 3024 23651019 23651164 5.340000e-60 243.0
35 TraesCS7B01G164600 chr3A 94.839 155 7 1 2879 3032 137690406 137690252 1.920000e-59 241.0
36 TraesCS7B01G164600 chr3A 85.417 144 18 3 918 1059 509196707 509196565 4.310000e-31 147.0
37 TraesCS7B01G164600 chr1B 96.575 146 5 0 2879 3024 182184994 182184849 5.340000e-60 243.0
38 TraesCS7B01G164600 chr2B 95.364 151 7 0 2874 3024 250888831 250888681 1.920000e-59 241.0
39 TraesCS7B01G164600 chr2B 86.250 80 7 2 180 255 683167348 683167427 3.430000e-12 84.2
40 TraesCS7B01G164600 chr4A 93.750 160 7 3 2865 3023 662204945 662205102 2.490000e-58 237.0
41 TraesCS7B01G164600 chr2A 86.331 139 16 3 918 1054 293069396 293069259 1.200000e-31 148.0
42 TraesCS7B01G164600 chr6A 85.417 144 18 3 918 1059 581496695 581496553 4.310000e-31 147.0
43 TraesCS7B01G164600 chr3B 84.946 93 9 2 171 258 637088499 637088591 7.360000e-14 89.8
44 TraesCS7B01G164600 chr1A 81.720 93 13 4 171 261 361384670 361384580 2.060000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G164600 chr7B 227279687 227285025 5338 False 9860.000000 9860 100.0000 1 5339 1 chr7B.!!$F1 5338
1 TraesCS7B01G164600 chr7D 250668288 250673584 5296 False 1184.666667 2309 93.7640 1 5319 6 chr7D.!!$F1 5318
2 TraesCS7B01G164600 chr7A 270760729 270764630 3901 True 1064.400000 2289 93.1186 1404 5319 5 chr7A.!!$R2 3915
3 TraesCS7B01G164600 chr7A 270772700 270774349 1649 True 407.000000 1175 91.9100 11 1386 4 chr7A.!!$R3 1375
4 TraesCS7B01G164600 chr5D 399947352 399947906 554 False 225.000000 303 84.9100 2208 2775 2 chr5D.!!$F2 567
5 TraesCS7B01G164600 chr5A 505503769 505504669 900 False 296.000000 303 81.8790 1876 2775 2 chr5A.!!$F1 899
6 TraesCS7B01G164600 chr5B 479827311 479828209 898 False 287.000000 298 81.4505 1876 2775 2 chr5B.!!$F1 899

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
801 1091 0.121197 TTCCTCCCCCAAGACCATCT 59.879 55.0 0.00 0.0 0.00 2.90 F
877 1170 0.179097 GGCTTCCTGACTCCGTCATC 60.179 60.0 0.00 0.0 41.94 2.92 F
2138 2596 0.461870 TAGCGCAGGTATGGTTGCTG 60.462 55.0 11.47 0.0 40.68 4.41 F
2908 3383 0.038435 TCGGTTGCGTGTAAATCCGA 60.038 50.0 0.00 0.0 43.52 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2123 2581 0.254747 TACCCAGCAACCATACCTGC 59.745 55.000 0.00 0.00 38.91 4.85 R
2874 3349 0.763035 ACCGAACAAGGCCTTACTGT 59.237 50.000 20.00 10.67 33.69 3.55 R
2968 3443 0.031817 ATTGGAGGGGATTGGCAAGG 60.032 55.000 5.96 0.00 0.00 3.61 R
4370 4938 1.132453 GCACCGAGGAAAATTGGTAGC 59.868 52.381 0.00 0.00 35.01 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
181 186 4.913335 TGAATACTCGCTCCGTTCTAAT 57.087 40.909 0.00 0.00 0.00 1.73
182 187 5.258456 TGAATACTCGCTCCGTTCTAATT 57.742 39.130 0.00 0.00 0.00 1.40
184 189 6.204359 TGAATACTCGCTCCGTTCTAATTAC 58.796 40.000 0.00 0.00 0.00 1.89
271 280 7.448748 AGTAATTTGGGGCGTTGATAATATC 57.551 36.000 0.00 0.00 0.00 1.63
312 597 7.064728 GGGTTGTGACTAATTCAGTTAGATGAC 59.935 40.741 0.00 0.00 41.99 3.06
390 675 2.095059 CGAAATTTTGTCTGGGAGCTGG 60.095 50.000 0.00 0.00 0.00 4.85
618 903 2.032302 CGACGACAGGAGGATTACAGAG 59.968 54.545 0.00 0.00 0.00 3.35
624 909 3.777522 ACAGGAGGATTACAGAGGGAAAG 59.222 47.826 0.00 0.00 0.00 2.62
638 923 1.602920 GGGAAAGCTCGTTTTGGCTTG 60.603 52.381 0.93 0.00 46.35 4.01
685 974 2.746375 ATCATCGCCACCACCTCCC 61.746 63.158 0.00 0.00 0.00 4.30
686 975 4.489771 CATCGCCACCACCTCCCC 62.490 72.222 0.00 0.00 0.00 4.81
735 1024 0.999712 GTCCCATTCCCTTTCCCTCA 59.000 55.000 0.00 0.00 0.00 3.86
759 1048 3.142393 CCGTCCCAGATAGGCAGG 58.858 66.667 0.00 0.00 35.39 4.85
766 1055 0.972883 CCAGATAGGCAGGTAGCTCC 59.027 60.000 0.00 0.00 44.79 4.70
770 1059 1.467678 ATAGGCAGGTAGCTCCGCTG 61.468 60.000 0.00 0.00 44.79 5.18
771 1060 2.567664 TAGGCAGGTAGCTCCGCTGA 62.568 60.000 0.00 0.00 44.79 4.26
772 1061 2.801631 GGCAGGTAGCTCCGCTGAT 61.802 63.158 0.00 0.00 44.79 2.90
778 1067 1.075970 TAGCTCCGCTGATCAGGGT 60.076 57.895 31.01 19.12 40.10 4.34
788 1077 2.038659 CTGATCAGGGTCTCTTCCTCC 58.961 57.143 15.38 0.00 31.06 4.30
801 1091 0.121197 TTCCTCCCCCAAGACCATCT 59.879 55.000 0.00 0.00 0.00 2.90
822 1112 2.041922 CCCCCATCCTCCGTCTGA 60.042 66.667 0.00 0.00 0.00 3.27
866 1159 0.251077 AGCAAAGGTGAGGCTTCCTG 60.251 55.000 11.86 4.41 33.21 3.86
867 1160 0.250901 GCAAAGGTGAGGCTTCCTGA 60.251 55.000 11.86 0.00 31.76 3.86
868 1161 1.528129 CAAAGGTGAGGCTTCCTGAC 58.472 55.000 11.86 0.00 37.03 3.51
869 1162 1.072965 CAAAGGTGAGGCTTCCTGACT 59.927 52.381 11.86 0.00 37.86 3.41
873 1166 3.701454 GAGGCTTCCTGACTCCGT 58.299 61.111 0.00 0.00 45.06 4.69
874 1167 1.513622 GAGGCTTCCTGACTCCGTC 59.486 63.158 0.00 0.00 45.06 4.79
875 1168 1.228894 AGGCTTCCTGACTCCGTCA 60.229 57.895 0.00 0.00 40.50 4.35
876 1169 0.616111 AGGCTTCCTGACTCCGTCAT 60.616 55.000 0.00 0.00 41.94 3.06
877 1170 0.179097 GGCTTCCTGACTCCGTCATC 60.179 60.000 0.00 0.00 41.94 2.92
879 1172 1.470632 GCTTCCTGACTCCGTCATCTG 60.471 57.143 0.00 0.00 41.94 2.90
880 1173 1.821753 CTTCCTGACTCCGTCATCTGT 59.178 52.381 0.00 0.00 41.94 3.41
881 1174 1.177401 TCCTGACTCCGTCATCTGTG 58.823 55.000 0.00 0.00 41.94 3.66
882 1175 0.891373 CCTGACTCCGTCATCTGTGT 59.109 55.000 0.00 0.00 41.94 3.72
883 1176 1.273606 CCTGACTCCGTCATCTGTGTT 59.726 52.381 0.00 0.00 41.94 3.32
884 1177 2.492088 CCTGACTCCGTCATCTGTGTTA 59.508 50.000 0.00 0.00 41.94 2.41
885 1178 3.502920 CTGACTCCGTCATCTGTGTTAC 58.497 50.000 0.00 0.00 41.94 2.50
886 1179 3.154710 TGACTCCGTCATCTGTGTTACT 58.845 45.455 0.00 0.00 37.67 2.24
908 1201 0.944311 GTATGCCTCCGCCGTGTATG 60.944 60.000 0.00 0.00 0.00 2.39
927 1220 1.302192 GGCCTGACCGTTTGTGCTA 60.302 57.895 0.00 0.00 0.00 3.49
943 1236 6.403866 TTGTGCTAATGTCAAATCTGGTTT 57.596 33.333 0.00 0.00 0.00 3.27
944 1237 6.012658 TGTGCTAATGTCAAATCTGGTTTC 57.987 37.500 0.00 0.00 0.00 2.78
945 1238 5.088739 GTGCTAATGTCAAATCTGGTTTCG 58.911 41.667 0.00 0.00 0.00 3.46
946 1239 4.098416 GCTAATGTCAAATCTGGTTTCGC 58.902 43.478 0.00 0.00 0.00 4.70
947 1240 4.142600 GCTAATGTCAAATCTGGTTTCGCT 60.143 41.667 0.00 0.00 0.00 4.93
948 1241 4.853924 AATGTCAAATCTGGTTTCGCTT 57.146 36.364 0.00 0.00 0.00 4.68
949 1242 3.624326 TGTCAAATCTGGTTTCGCTTG 57.376 42.857 0.00 0.00 0.00 4.01
950 1243 3.210227 TGTCAAATCTGGTTTCGCTTGA 58.790 40.909 0.00 0.00 0.00 3.02
951 1244 3.250762 TGTCAAATCTGGTTTCGCTTGAG 59.749 43.478 0.00 0.00 0.00 3.02
952 1245 3.251004 GTCAAATCTGGTTTCGCTTGAGT 59.749 43.478 0.00 0.00 0.00 3.41
958 1251 0.955919 GGTTTCGCTTGAGTCAGGGG 60.956 60.000 12.50 12.50 0.00 4.79
990 1283 2.094417 GCAAAAGGAGAAAGTCGATCGG 59.906 50.000 16.41 0.00 0.00 4.18
991 1284 2.011540 AAAGGAGAAAGTCGATCGGC 57.988 50.000 12.83 12.83 0.00 5.54
1078 1371 1.494721 AGTTTCCCAGCAGTCCTGAAA 59.505 47.619 0.00 0.00 44.64 2.69
1094 1387 2.156098 TGAAAGGGCAAATGGTACGTC 58.844 47.619 0.00 0.00 0.00 4.34
1097 1390 0.690762 AGGGCAAATGGTACGTCTGT 59.309 50.000 0.00 0.00 0.00 3.41
1098 1391 1.073284 AGGGCAAATGGTACGTCTGTT 59.927 47.619 0.00 0.00 0.00 3.16
1099 1392 1.467342 GGGCAAATGGTACGTCTGTTC 59.533 52.381 0.00 0.00 0.00 3.18
1100 1393 2.423577 GGCAAATGGTACGTCTGTTCT 58.576 47.619 0.00 0.00 0.00 3.01
1101 1394 2.812011 GGCAAATGGTACGTCTGTTCTT 59.188 45.455 0.00 0.00 0.00 2.52
1102 1395 3.252458 GGCAAATGGTACGTCTGTTCTTT 59.748 43.478 0.00 0.00 0.00 2.52
1103 1396 4.453136 GGCAAATGGTACGTCTGTTCTTTA 59.547 41.667 0.00 0.00 0.00 1.85
1104 1397 5.379827 GCAAATGGTACGTCTGTTCTTTAC 58.620 41.667 0.00 0.00 0.00 2.01
1105 1398 5.178809 GCAAATGGTACGTCTGTTCTTTACT 59.821 40.000 0.00 0.00 0.00 2.24
1106 1399 6.590357 CAAATGGTACGTCTGTTCTTTACTG 58.410 40.000 0.00 0.00 0.00 2.74
1107 1400 4.247267 TGGTACGTCTGTTCTTTACTGG 57.753 45.455 0.00 0.00 0.00 4.00
1108 1401 3.890756 TGGTACGTCTGTTCTTTACTGGA 59.109 43.478 0.00 0.00 0.00 3.86
1109 1402 4.341806 TGGTACGTCTGTTCTTTACTGGAA 59.658 41.667 0.00 0.00 0.00 3.53
1110 1403 4.922103 GGTACGTCTGTTCTTTACTGGAAG 59.078 45.833 0.00 0.00 42.29 3.46
1130 1423 3.570638 CATGCCCTGCTTCGCGAG 61.571 66.667 9.59 4.97 0.00 5.03
1138 1431 1.669158 CTGCTTCGCGAGTCTGAACG 61.669 60.000 9.59 0.00 0.00 3.95
1153 1446 7.485277 CGAGTCTGAACGTATAAATGAGTTTCT 59.515 37.037 0.00 0.00 0.00 2.52
1157 1450 8.304596 TCTGAACGTATAAATGAGTTTCTGACT 58.695 33.333 0.00 0.00 42.70 3.41
1164 1457 7.897575 ATAAATGAGTTTCTGACTGACTGAC 57.102 36.000 0.00 0.00 39.19 3.51
1173 1466 2.671888 CTGACTGACTGACACATCATGC 59.328 50.000 0.00 0.00 33.22 4.06
1177 1470 2.676839 CTGACTGACACATCATGCTTCC 59.323 50.000 0.00 0.00 33.22 3.46
1180 1473 2.224597 ACTGACACATCATGCTTCCACA 60.225 45.455 0.00 0.00 33.22 4.17
1186 1479 3.752747 CACATCATGCTTCCACACTTGTA 59.247 43.478 0.00 0.00 0.00 2.41
1199 1492 4.335315 CCACACTTGTACATGTTCAGTTGT 59.665 41.667 11.46 9.23 0.00 3.32
1204 1497 7.148086 ACACTTGTACATGTTCAGTTGTCATTT 60.148 33.333 11.46 0.00 0.00 2.32
1205 1498 7.376866 CACTTGTACATGTTCAGTTGTCATTTC 59.623 37.037 11.46 0.00 0.00 2.17
1208 1501 8.669946 TGTACATGTTCAGTTGTCATTTCTTA 57.330 30.769 2.30 0.00 0.00 2.10
1271 1564 2.332063 ATTGATACCAAGGGACTGCG 57.668 50.000 0.00 0.00 40.86 5.18
1273 1566 1.883084 GATACCAAGGGACTGCGCG 60.883 63.158 0.00 0.00 40.86 6.86
1274 1567 2.292794 GATACCAAGGGACTGCGCGA 62.293 60.000 12.10 0.00 40.86 5.87
1291 1584 1.138266 GCGAGTAATTCACCCCTGCTA 59.862 52.381 0.00 0.00 0.00 3.49
1293 1586 2.803492 CGAGTAATTCACCCCTGCTAGC 60.803 54.545 8.10 8.10 0.00 3.42
1295 1588 2.846827 AGTAATTCACCCCTGCTAGCTT 59.153 45.455 17.23 0.61 0.00 3.74
1448 1896 4.153117 GGTACATGCATTGCTAGCTGTATC 59.847 45.833 17.23 11.24 32.49 2.24
1472 1920 4.573900 AGCAGATAGTTGACTGAAACAGG 58.426 43.478 0.00 0.00 35.51 4.00
1491 1939 1.466167 GGCAAGCTGTACTGTCACATG 59.534 52.381 1.46 0.00 0.00 3.21
1539 1987 5.530519 TTATTCAGTCATCAACGTCAAGC 57.469 39.130 0.00 0.00 0.00 4.01
1558 2006 1.270893 GCTTGAAGTTCCTTCCTCCGT 60.271 52.381 0.00 0.00 39.51 4.69
1584 2032 7.563924 TGGCTATCTGTAACTACCAATTAGACT 59.436 37.037 0.00 0.00 0.00 3.24
1617 2065 7.712204 TGGTGACTAACATGACAGTCTATTA 57.288 36.000 22.85 8.26 41.46 0.98
1618 2066 8.306313 TGGTGACTAACATGACAGTCTATTAT 57.694 34.615 22.85 0.00 41.46 1.28
1619 2067 8.197439 TGGTGACTAACATGACAGTCTATTATG 58.803 37.037 22.85 0.00 41.46 1.90
1620 2068 7.169982 GGTGACTAACATGACAGTCTATTATGC 59.830 40.741 22.85 10.58 41.46 3.14
1621 2069 7.706607 GTGACTAACATGACAGTCTATTATGCA 59.293 37.037 22.85 0.00 41.46 3.96
1726 2175 7.759489 AACTATTGCAAAGTTCAGTTATCCA 57.241 32.000 16.38 0.00 31.56 3.41
1805 2263 8.244113 TGTCAAGCGTAGGTGATAATATATCAG 58.756 37.037 0.44 0.00 39.47 2.90
1827 2285 4.869297 AGCGCATTCTGCATAATATCTCTC 59.131 41.667 11.47 0.00 45.36 3.20
1828 2286 4.869297 GCGCATTCTGCATAATATCTCTCT 59.131 41.667 0.30 0.00 45.36 3.10
1830 2288 5.868258 CGCATTCTGCATAATATCTCTCTGT 59.132 40.000 0.00 0.00 45.36 3.41
1831 2289 6.183360 CGCATTCTGCATAATATCTCTCTGTG 60.183 42.308 0.00 0.00 45.36 3.66
1832 2290 6.649973 GCATTCTGCATAATATCTCTCTGTGT 59.350 38.462 0.00 0.00 44.26 3.72
1833 2291 7.148606 GCATTCTGCATAATATCTCTCTGTGTC 60.149 40.741 0.00 0.00 44.26 3.67
1834 2292 7.594351 TTCTGCATAATATCTCTCTGTGTCT 57.406 36.000 0.00 0.00 0.00 3.41
1835 2293 7.213216 TCTGCATAATATCTCTCTGTGTCTC 57.787 40.000 0.00 0.00 0.00 3.36
1836 2294 7.003482 TCTGCATAATATCTCTCTGTGTCTCT 58.997 38.462 0.00 0.00 0.00 3.10
1837 2295 6.979465 TGCATAATATCTCTCTGTGTCTCTG 58.021 40.000 0.00 0.00 0.00 3.35
1838 2296 5.863397 GCATAATATCTCTCTGTGTCTCTGC 59.137 44.000 0.00 0.00 0.00 4.26
1839 2297 6.516360 GCATAATATCTCTCTGTGTCTCTGCA 60.516 42.308 0.00 0.00 0.00 4.41
1844 2302 3.193056 TCTCTCTGTGTCTCTGCATTCTG 59.807 47.826 0.00 0.00 0.00 3.02
1848 2306 3.136763 CTGTGTCTCTGCATTCTGTGTT 58.863 45.455 0.00 0.00 0.00 3.32
1859 2317 1.311859 TTCTGTGTTTCTGCTGCTGG 58.688 50.000 6.69 0.00 0.00 4.85
1870 2328 1.152902 GCTGCTGGCACCATATCCA 60.153 57.895 0.00 0.00 41.35 3.41
1919 2377 7.537596 TGGTTTTACTCAAATTGGTGATCAT 57.462 32.000 0.00 0.00 0.00 2.45
2120 2578 6.064060 CCCTGAGCCTGACAATGAATTTATA 58.936 40.000 0.00 0.00 0.00 0.98
2123 2581 5.237127 TGAGCCTGACAATGAATTTATAGCG 59.763 40.000 0.00 0.00 0.00 4.26
2137 2595 1.904771 TAGCGCAGGTATGGTTGCT 59.095 52.632 11.47 0.00 40.68 3.91
2138 2596 0.461870 TAGCGCAGGTATGGTTGCTG 60.462 55.000 11.47 0.00 40.68 4.41
2157 2631 4.777366 TGCTGGGTATATAGCTATCTGCAA 59.223 41.667 10.16 0.00 45.94 4.08
2163 2637 8.821817 TGGGTATATAGCTATCTGCAAATGTAA 58.178 33.333 10.16 0.00 45.94 2.41
2368 2843 6.925610 TTTTGCATGGTACTTATCTAGCAG 57.074 37.500 0.00 0.00 31.87 4.24
2387 2862 9.574516 TCTAGCAGACACATAAGAGTTATCATA 57.425 33.333 0.00 0.00 0.00 2.15
2415 2890 8.612619 AGCTAATTCAAGGTTTTATGTATGTCG 58.387 33.333 0.00 0.00 0.00 4.35
2421 2896 6.256975 TCAAGGTTTTATGTATGTCGATTCCG 59.743 38.462 0.00 0.00 37.07 4.30
2446 2921 0.729116 CCTGCCATCAAAGCTACACG 59.271 55.000 0.00 0.00 0.00 4.49
2457 2932 8.648097 CCATCAAAGCTACACGTATATAACATC 58.352 37.037 0.00 0.00 0.00 3.06
2651 3126 2.478894 ACGGTCGAGCAATGTACTTTTG 59.521 45.455 15.89 0.00 0.00 2.44
2778 3253 9.167311 GATATCATGCTCCCGAGTAATTATTTT 57.833 33.333 0.00 0.00 0.00 1.82
2779 3254 6.618287 TCATGCTCCCGAGTAATTATTTTG 57.382 37.500 0.00 0.00 0.00 2.44
2783 3258 6.177610 TGCTCCCGAGTAATTATTTTGACTT 58.822 36.000 0.00 0.00 0.00 3.01
2852 3327 6.620877 TTGTGGTCCTGAGTAATAATCTGT 57.379 37.500 0.00 0.00 0.00 3.41
2874 3349 2.158249 TGGGGGTTTCACCAAATCATCA 60.158 45.455 0.00 0.00 41.02 3.07
2878 3353 3.573967 GGGTTTCACCAAATCATCACAGT 59.426 43.478 0.00 0.00 41.02 3.55
2879 3354 4.764823 GGGTTTCACCAAATCATCACAGTA 59.235 41.667 0.00 0.00 41.02 2.74
2880 3355 5.242838 GGGTTTCACCAAATCATCACAGTAA 59.757 40.000 0.00 0.00 41.02 2.24
2881 3356 6.381801 GGTTTCACCAAATCATCACAGTAAG 58.618 40.000 0.00 0.00 38.42 2.34
2882 3357 6.381801 GTTTCACCAAATCATCACAGTAAGG 58.618 40.000 0.00 0.00 0.00 2.69
2883 3358 4.009675 TCACCAAATCATCACAGTAAGGC 58.990 43.478 0.00 0.00 0.00 4.35
2884 3359 3.129287 CACCAAATCATCACAGTAAGGCC 59.871 47.826 0.00 0.00 0.00 5.19
2885 3360 3.010584 ACCAAATCATCACAGTAAGGCCT 59.989 43.478 0.00 0.00 0.00 5.19
2886 3361 4.019174 CCAAATCATCACAGTAAGGCCTT 58.981 43.478 24.18 24.18 0.00 4.35
2887 3362 4.142315 CCAAATCATCACAGTAAGGCCTTG 60.142 45.833 28.77 15.10 0.00 3.61
2888 3363 4.307032 AATCATCACAGTAAGGCCTTGT 57.693 40.909 28.77 15.84 0.00 3.16
2889 3364 3.788227 TCATCACAGTAAGGCCTTGTT 57.212 42.857 28.77 12.94 0.00 2.83
2890 3365 3.674997 TCATCACAGTAAGGCCTTGTTC 58.325 45.455 28.77 17.15 0.00 3.18
2891 3366 2.163818 TCACAGTAAGGCCTTGTTCG 57.836 50.000 28.77 15.34 0.00 3.95
2892 3367 1.156736 CACAGTAAGGCCTTGTTCGG 58.843 55.000 28.77 19.01 0.00 4.30
2893 3368 0.763035 ACAGTAAGGCCTTGTTCGGT 59.237 50.000 28.77 19.60 0.00 4.69
2894 3369 1.142262 ACAGTAAGGCCTTGTTCGGTT 59.858 47.619 28.77 0.57 0.00 4.44
2895 3370 1.535462 CAGTAAGGCCTTGTTCGGTTG 59.465 52.381 28.77 10.99 0.00 3.77
2896 3371 0.240145 GTAAGGCCTTGTTCGGTTGC 59.760 55.000 28.77 0.00 0.00 4.17
2897 3372 1.231958 TAAGGCCTTGTTCGGTTGCG 61.232 55.000 28.77 0.00 0.00 4.85
2898 3373 3.284449 GGCCTTGTTCGGTTGCGT 61.284 61.111 0.00 0.00 0.00 5.24
2899 3374 2.051345 GCCTTGTTCGGTTGCGTG 60.051 61.111 0.00 0.00 0.00 5.34
2900 3375 2.830285 GCCTTGTTCGGTTGCGTGT 61.830 57.895 0.00 0.00 0.00 4.49
2901 3376 1.500512 GCCTTGTTCGGTTGCGTGTA 61.501 55.000 0.00 0.00 0.00 2.90
2902 3377 0.938713 CCTTGTTCGGTTGCGTGTAA 59.061 50.000 0.00 0.00 0.00 2.41
2903 3378 1.331138 CCTTGTTCGGTTGCGTGTAAA 59.669 47.619 0.00 0.00 0.00 2.01
2904 3379 2.031508 CCTTGTTCGGTTGCGTGTAAAT 60.032 45.455 0.00 0.00 0.00 1.40
2905 3380 2.953640 TGTTCGGTTGCGTGTAAATC 57.046 45.000 0.00 0.00 0.00 2.17
2906 3381 1.532007 TGTTCGGTTGCGTGTAAATCC 59.468 47.619 0.00 0.00 0.00 3.01
2907 3382 0.791422 TTCGGTTGCGTGTAAATCCG 59.209 50.000 0.00 0.00 39.40 4.18
2908 3383 0.038435 TCGGTTGCGTGTAAATCCGA 60.038 50.000 0.00 0.00 43.52 4.55
2909 3384 0.368907 CGGTTGCGTGTAAATCCGAG 59.631 55.000 0.00 0.00 40.29 4.63
2910 3385 1.435577 GGTTGCGTGTAAATCCGAGT 58.564 50.000 0.00 0.00 0.00 4.18
2911 3386 1.127951 GGTTGCGTGTAAATCCGAGTG 59.872 52.381 0.00 0.00 0.00 3.51
2912 3387 1.127951 GTTGCGTGTAAATCCGAGTGG 59.872 52.381 0.00 0.00 0.00 4.00
2922 3397 2.296920 TCCGAGTGGATTGAAGGGG 58.703 57.895 0.00 0.00 40.17 4.79
2923 3398 0.546747 TCCGAGTGGATTGAAGGGGT 60.547 55.000 0.00 0.00 40.17 4.95
2924 3399 0.328258 CCGAGTGGATTGAAGGGGTT 59.672 55.000 0.00 0.00 37.49 4.11
2925 3400 1.271926 CCGAGTGGATTGAAGGGGTTT 60.272 52.381 0.00 0.00 37.49 3.27
2926 3401 1.812571 CGAGTGGATTGAAGGGGTTTG 59.187 52.381 0.00 0.00 0.00 2.93
2927 3402 2.552155 CGAGTGGATTGAAGGGGTTTGA 60.552 50.000 0.00 0.00 0.00 2.69
2928 3403 3.084786 GAGTGGATTGAAGGGGTTTGAG 58.915 50.000 0.00 0.00 0.00 3.02
2929 3404 2.171003 GTGGATTGAAGGGGTTTGAGG 58.829 52.381 0.00 0.00 0.00 3.86
2930 3405 2.069775 TGGATTGAAGGGGTTTGAGGA 58.930 47.619 0.00 0.00 0.00 3.71
2931 3406 2.041620 TGGATTGAAGGGGTTTGAGGAG 59.958 50.000 0.00 0.00 0.00 3.69
2932 3407 2.621668 GGATTGAAGGGGTTTGAGGAGG 60.622 54.545 0.00 0.00 0.00 4.30
2933 3408 1.827792 TTGAAGGGGTTTGAGGAGGA 58.172 50.000 0.00 0.00 0.00 3.71
2934 3409 2.059756 TGAAGGGGTTTGAGGAGGAT 57.940 50.000 0.00 0.00 0.00 3.24
2935 3410 2.358258 TGAAGGGGTTTGAGGAGGATT 58.642 47.619 0.00 0.00 0.00 3.01
2936 3411 2.721906 TGAAGGGGTTTGAGGAGGATTT 59.278 45.455 0.00 0.00 0.00 2.17
2937 3412 3.920197 TGAAGGGGTTTGAGGAGGATTTA 59.080 43.478 0.00 0.00 0.00 1.40
2938 3413 4.355588 TGAAGGGGTTTGAGGAGGATTTAA 59.644 41.667 0.00 0.00 0.00 1.52
2939 3414 5.162925 TGAAGGGGTTTGAGGAGGATTTAAA 60.163 40.000 0.00 0.00 0.00 1.52
2940 3415 4.673968 AGGGGTTTGAGGAGGATTTAAAC 58.326 43.478 0.00 0.00 0.00 2.01
2941 3416 3.767673 GGGGTTTGAGGAGGATTTAAACC 59.232 47.826 0.00 0.00 45.86 3.27
2942 3417 4.510386 GGGGTTTGAGGAGGATTTAAACCT 60.510 45.833 14.54 8.52 45.86 3.50
2956 3431 9.807921 AGGATTTAAACCTCTTCTATGTCAAAA 57.192 29.630 0.00 0.00 31.43 2.44
2964 3439 8.738645 ACCTCTTCTATGTCAAAATATGAACC 57.261 34.615 0.00 0.00 40.50 3.62
2965 3440 8.328758 ACCTCTTCTATGTCAAAATATGAACCA 58.671 33.333 0.00 0.00 40.50 3.67
2966 3441 9.177608 CCTCTTCTATGTCAAAATATGAACCAA 57.822 33.333 0.00 0.00 40.50 3.67
2969 3444 9.956720 CTTCTATGTCAAAATATGAACCAATCC 57.043 33.333 0.00 0.00 40.50 3.01
2970 3445 9.699410 TTCTATGTCAAAATATGAACCAATCCT 57.301 29.630 0.00 0.00 40.50 3.24
2971 3446 9.699410 TCTATGTCAAAATATGAACCAATCCTT 57.301 29.630 0.00 0.00 40.50 3.36
2972 3447 9.740239 CTATGTCAAAATATGAACCAATCCTTG 57.260 33.333 0.00 0.00 40.50 3.61
2973 3448 6.397272 TGTCAAAATATGAACCAATCCTTGC 58.603 36.000 0.00 0.00 40.50 4.01
2974 3449 5.812127 GTCAAAATATGAACCAATCCTTGCC 59.188 40.000 0.00 0.00 40.50 4.52
2975 3450 5.483231 TCAAAATATGAACCAATCCTTGCCA 59.517 36.000 0.00 0.00 34.30 4.92
2976 3451 6.013898 TCAAAATATGAACCAATCCTTGCCAA 60.014 34.615 0.00 0.00 34.30 4.52
2977 3452 6.564557 AAATATGAACCAATCCTTGCCAAT 57.435 33.333 0.00 0.00 0.00 3.16
2978 3453 5.796424 ATATGAACCAATCCTTGCCAATC 57.204 39.130 0.00 0.00 0.00 2.67
2979 3454 2.178580 TGAACCAATCCTTGCCAATCC 58.821 47.619 0.00 0.00 0.00 3.01
2980 3455 1.482182 GAACCAATCCTTGCCAATCCC 59.518 52.381 0.00 0.00 0.00 3.85
2981 3456 0.325577 ACCAATCCTTGCCAATCCCC 60.326 55.000 0.00 0.00 0.00 4.81
2982 3457 0.031817 CCAATCCTTGCCAATCCCCT 60.032 55.000 0.00 0.00 0.00 4.79
2983 3458 1.406903 CAATCCTTGCCAATCCCCTC 58.593 55.000 0.00 0.00 0.00 4.30
2984 3459 0.262876 AATCCTTGCCAATCCCCTCC 59.737 55.000 0.00 0.00 0.00 4.30
2985 3460 0.925720 ATCCTTGCCAATCCCCTCCA 60.926 55.000 0.00 0.00 0.00 3.86
2986 3461 1.145900 TCCTTGCCAATCCCCTCCAA 61.146 55.000 0.00 0.00 0.00 3.53
2987 3462 0.031817 CCTTGCCAATCCCCTCCAAT 60.032 55.000 0.00 0.00 0.00 3.16
2988 3463 1.406903 CTTGCCAATCCCCTCCAATC 58.593 55.000 0.00 0.00 0.00 2.67
2989 3464 0.032217 TTGCCAATCCCCTCCAATCC 60.032 55.000 0.00 0.00 0.00 3.01
2990 3465 0.925720 TGCCAATCCCCTCCAATCCT 60.926 55.000 0.00 0.00 0.00 3.24
2991 3466 0.178978 GCCAATCCCCTCCAATCCTC 60.179 60.000 0.00 0.00 0.00 3.71
2992 3467 1.527457 CCAATCCCCTCCAATCCTCT 58.473 55.000 0.00 0.00 0.00 3.69
2993 3468 1.855599 CCAATCCCCTCCAATCCTCTT 59.144 52.381 0.00 0.00 0.00 2.85
2994 3469 2.423947 CCAATCCCCTCCAATCCTCTTG 60.424 54.545 0.00 0.00 0.00 3.02
2995 3470 1.527457 ATCCCCTCCAATCCTCTTGG 58.473 55.000 0.00 0.00 40.87 3.61
2996 3471 0.624500 TCCCCTCCAATCCTCTTGGG 60.625 60.000 4.28 0.00 39.96 4.12
2997 3472 1.649271 CCCCTCCAATCCTCTTGGGG 61.649 65.000 0.00 0.00 46.89 4.96
2998 3473 0.624500 CCCTCCAATCCTCTTGGGGA 60.625 60.000 5.43 0.00 42.70 4.81
2999 3474 0.842635 CCTCCAATCCTCTTGGGGAG 59.157 60.000 5.43 0.00 42.70 4.30
3000 3475 1.626350 CCTCCAATCCTCTTGGGGAGA 60.626 57.143 5.43 0.00 46.38 3.71
3009 3484 3.847671 CTCTTGGGGAGAGGATTAACC 57.152 52.381 0.00 0.00 46.77 2.85
3010 3485 2.103263 CTCTTGGGGAGAGGATTAACCG 59.897 54.545 0.00 0.00 46.77 4.44
3011 3486 2.116238 CTTGGGGAGAGGATTAACCGA 58.884 52.381 0.00 0.00 44.74 4.69
3012 3487 2.257391 TGGGGAGAGGATTAACCGAA 57.743 50.000 0.00 0.00 44.74 4.30
3013 3488 1.835531 TGGGGAGAGGATTAACCGAAC 59.164 52.381 0.00 0.00 44.74 3.95
3014 3489 1.835531 GGGGAGAGGATTAACCGAACA 59.164 52.381 0.00 0.00 44.74 3.18
3015 3490 2.237893 GGGGAGAGGATTAACCGAACAA 59.762 50.000 0.00 0.00 44.74 2.83
3016 3491 3.307904 GGGGAGAGGATTAACCGAACAAA 60.308 47.826 0.00 0.00 44.74 2.83
3017 3492 3.939592 GGGAGAGGATTAACCGAACAAAG 59.060 47.826 0.00 0.00 44.74 2.77
3018 3493 3.374367 GGAGAGGATTAACCGAACAAAGC 59.626 47.826 0.00 0.00 44.74 3.51
3019 3494 3.344515 AGAGGATTAACCGAACAAAGCC 58.655 45.455 0.00 0.00 44.74 4.35
3028 3503 4.081322 ACCGAACAAAGCCTAAGAAAGA 57.919 40.909 0.00 0.00 0.00 2.52
3143 3618 8.204836 ACTATAGTAATCACCTGATTCCAACAC 58.795 37.037 2.75 0.00 43.17 3.32
3149 3624 4.009675 TCACCTGATTCCAACACATAAGC 58.990 43.478 0.00 0.00 0.00 3.09
3193 3668 0.250858 CCATGACTGGCCAACTGACA 60.251 55.000 7.01 1.99 35.23 3.58
3220 3695 3.247006 AGTGACGTGTATAGCTTTGGG 57.753 47.619 0.00 0.00 0.00 4.12
3298 3773 2.613223 GGGACAGCAGAGTCTTGTTACC 60.613 54.545 0.00 2.41 38.57 2.85
3323 3798 5.822519 TGGGTATGTATGCATTCACTTCTTC 59.177 40.000 3.54 0.00 36.58 2.87
3355 3830 6.015940 CCCTATTATTCAACAAGATTCTGCCC 60.016 42.308 0.00 0.00 0.00 5.36
3405 3880 1.072173 CTGTGGTGTTGTCCTGATGGA 59.928 52.381 0.00 0.00 40.69 3.41
3423 3898 3.572642 TGGAGGTCGATTTATAGAGGCA 58.427 45.455 0.00 0.00 0.00 4.75
3424 3899 3.964688 TGGAGGTCGATTTATAGAGGCAA 59.035 43.478 0.00 0.00 0.00 4.52
3425 3900 4.593206 TGGAGGTCGATTTATAGAGGCAAT 59.407 41.667 0.00 0.00 0.00 3.56
3426 3901 5.778241 TGGAGGTCGATTTATAGAGGCAATA 59.222 40.000 0.00 0.00 0.00 1.90
3472 3947 0.038744 AACAGCCCCATTCTCACAGG 59.961 55.000 0.00 0.00 0.00 4.00
3480 3955 3.209410 CCCATTCTCACAGGACATAAGC 58.791 50.000 0.00 0.00 0.00 3.09
3486 3961 5.939764 TCTCACAGGACATAAGCTGTAAT 57.060 39.130 0.00 0.00 38.54 1.89
3599 4074 4.635765 TGGATTATGTGTAAGCAGTTCTGC 59.364 41.667 15.88 15.88 0.00 4.26
3645 4121 5.814764 TTGGCACGTCAGTAAAGTTTTTA 57.185 34.783 0.00 0.00 0.00 1.52
3711 4262 5.507315 GGTGAGGACAAGGTAAAACAATGTG 60.507 44.000 0.00 0.00 0.00 3.21
3728 4279 8.816640 AACAATGTGTTGATCCAAGATTAAAC 57.183 30.769 0.00 0.00 39.45 2.01
3764 4315 4.157840 CCAAAAGGAGTTGCCAAGGTATAC 59.842 45.833 0.00 0.00 40.02 1.47
3784 4335 2.023791 ACCTTCCTCTCTCCTCCCTAAC 60.024 54.545 0.00 0.00 0.00 2.34
3793 4344 1.620819 CTCCTCCCTAACGCATATGCT 59.379 52.381 24.56 10.26 39.32 3.79
3861 4413 8.915654 GTGTATCATTTTGTGCTAAAAAGGAAG 58.084 33.333 13.15 1.61 41.50 3.46
3862 4414 7.598493 TGTATCATTTTGTGCTAAAAAGGAAGC 59.402 33.333 13.15 10.30 41.50 3.86
3896 4449 5.463061 CCAACAATTACAAAGCCACTCAAAG 59.537 40.000 0.00 0.00 0.00 2.77
3905 4458 2.949106 CACTCAAAGTGGCTGCGG 59.051 61.111 0.00 0.00 42.35 5.69
3985 4542 4.043310 AGGAAGTGGATGGACATTTCTCAA 59.957 41.667 0.00 0.00 37.29 3.02
4006 4563 8.509690 TCTCAACTTTGCTCAAATATTCTTCAG 58.490 33.333 0.00 0.00 0.00 3.02
4007 4564 7.086376 TCAACTTTGCTCAAATATTCTTCAGC 58.914 34.615 0.00 0.00 0.00 4.26
4010 4567 7.664758 ACTTTGCTCAAATATTCTTCAGCTTT 58.335 30.769 8.51 0.00 0.00 3.51
4011 4568 7.597743 ACTTTGCTCAAATATTCTTCAGCTTTG 59.402 33.333 8.51 0.00 0.00 2.77
4034 4598 2.867429 CTAGGGAAAAACTGCATTGCG 58.133 47.619 3.84 1.69 0.00 4.85
4056 4620 5.848559 GCGAGCTCTAGTTTTTCTTTCTTTG 59.151 40.000 12.85 0.00 0.00 2.77
4065 4629 6.820335 AGTTTTTCTTTCTTTGAGGAATGGG 58.180 36.000 0.00 0.00 0.00 4.00
4077 4641 3.019564 GAGGAATGGGTGGACATTTCTG 58.980 50.000 4.56 0.00 44.67 3.02
4079 4643 3.270433 AGGAATGGGTGGACATTTCTGAT 59.730 43.478 0.00 0.00 43.38 2.90
4080 4644 4.026052 GGAATGGGTGGACATTTCTGATT 58.974 43.478 0.00 0.00 40.92 2.57
4082 4646 5.394553 GGAATGGGTGGACATTTCTGATTTC 60.395 44.000 0.00 0.00 40.92 2.17
4086 4650 5.945784 TGGGTGGACATTTCTGATTTCTTAG 59.054 40.000 0.00 0.00 0.00 2.18
4087 4651 5.163612 GGGTGGACATTTCTGATTTCTTAGC 60.164 44.000 0.00 0.00 0.00 3.09
4088 4652 5.649831 GGTGGACATTTCTGATTTCTTAGCT 59.350 40.000 0.00 0.00 0.00 3.32
4089 4653 6.151817 GGTGGACATTTCTGATTTCTTAGCTT 59.848 38.462 0.00 0.00 0.00 3.74
4090 4654 7.309438 GGTGGACATTTCTGATTTCTTAGCTTT 60.309 37.037 0.00 0.00 0.00 3.51
4091 4655 7.540055 GTGGACATTTCTGATTTCTTAGCTTTG 59.460 37.037 0.00 0.00 0.00 2.77
4092 4656 7.448161 TGGACATTTCTGATTTCTTAGCTTTGA 59.552 33.333 0.00 0.00 0.00 2.69
4093 4657 8.465201 GGACATTTCTGATTTCTTAGCTTTGAT 58.535 33.333 0.00 0.00 0.00 2.57
4094 4658 9.286946 GACATTTCTGATTTCTTAGCTTTGATG 57.713 33.333 0.00 0.00 0.00 3.07
4119 4683 5.733620 ATCTTCAAGTTGCCATGAATTGT 57.266 34.783 0.00 0.00 35.20 2.71
4131 4695 5.104982 TGCCATGAATTGTTAGGGAAAATCC 60.105 40.000 0.00 0.00 35.23 3.01
4149 4713 3.052455 TCCGCATTGCTTGAACTAGAA 57.948 42.857 7.12 0.00 0.00 2.10
4239 4807 3.741344 GTGTGCAATACGAGTCTGAGTTT 59.259 43.478 0.00 0.00 0.00 2.66
4245 4813 5.393243 GCAATACGAGTCTGAGTTTAGACCT 60.393 44.000 0.00 0.00 46.48 3.85
4275 4843 3.848019 GCATTGTAGTCAAAGCATTGTCG 59.152 43.478 1.04 0.00 44.41 4.35
4284 4852 2.143876 AAGCATTGTCGCCCCTTATT 57.856 45.000 0.00 0.00 0.00 1.40
4285 4853 3.290948 AAGCATTGTCGCCCCTTATTA 57.709 42.857 0.00 0.00 0.00 0.98
4286 4854 3.508845 AGCATTGTCGCCCCTTATTAT 57.491 42.857 0.00 0.00 0.00 1.28
4287 4855 3.832527 AGCATTGTCGCCCCTTATTATT 58.167 40.909 0.00 0.00 0.00 1.40
4296 4864 7.519927 TGTCGCCCCTTATTATTAATAAACCT 58.480 34.615 11.80 0.00 33.26 3.50
4304 4872 9.066892 CCTTATTATTAATAAACCTCAGCAGCA 57.933 33.333 11.80 0.00 33.26 4.41
4323 4891 4.135153 CCGGGAGCTCCAGACACG 62.135 72.222 33.29 25.08 37.91 4.49
4352 4920 5.798434 CAGATACTTGACAACATGTGCAATG 59.202 40.000 0.00 0.00 36.20 2.82
4357 4925 0.241749 ACAACATGTGCAATGCGAGG 59.758 50.000 0.00 0.00 0.00 4.63
4370 4938 4.406069 CAATGCGAGGTTCATGTAAAGTG 58.594 43.478 0.00 0.00 0.00 3.16
4371 4939 1.804151 TGCGAGGTTCATGTAAAGTGC 59.196 47.619 0.00 0.00 0.00 4.40
4389 4957 2.161609 GTGCTACCAATTTTCCTCGGTG 59.838 50.000 0.00 0.00 32.81 4.94
4449 5017 7.851228 TGTTGTCTTGATCAGGTTGTATATCT 58.149 34.615 4.57 0.00 0.00 1.98
4450 5018 8.321353 TGTTGTCTTGATCAGGTTGTATATCTT 58.679 33.333 4.57 0.00 0.00 2.40
4549 5117 1.746220 GTCATCGAGGACTACTGCAGT 59.254 52.381 25.12 25.12 41.47 4.40
4556 5124 4.219944 TCGAGGACTACTGCAGTTAATTGT 59.780 41.667 27.06 15.55 37.72 2.71
4557 5125 4.929808 CGAGGACTACTGCAGTTAATTGTT 59.070 41.667 27.06 5.19 37.72 2.83
4558 5126 5.408604 CGAGGACTACTGCAGTTAATTGTTT 59.591 40.000 27.06 3.61 37.72 2.83
4559 5127 6.073222 CGAGGACTACTGCAGTTAATTGTTTT 60.073 38.462 27.06 8.58 37.72 2.43
4588 5156 5.416271 TGTGTCCTTTTCACTCCTATACC 57.584 43.478 0.00 0.00 36.83 2.73
4592 5160 6.154021 GTGTCCTTTTCACTCCTATACCTGTA 59.846 42.308 0.00 0.00 33.59 2.74
4595 5164 7.927092 GTCCTTTTCACTCCTATACCTGTATTC 59.073 40.741 0.00 0.00 0.00 1.75
4628 5197 5.120830 GTGTTATGTGTTCTTCAGGCAGTAG 59.879 44.000 0.00 0.00 0.00 2.57
4629 5198 2.169832 TGTGTTCTTCAGGCAGTAGC 57.830 50.000 0.00 0.00 41.10 3.58
4833 5565 6.149474 TCAGTAAGCTTTTCTTGCCTATGTTC 59.851 38.462 3.20 0.00 38.03 3.18
4868 5600 7.842887 ACTAGTCTTAGTATTCAGAATCCCC 57.157 40.000 0.00 0.00 38.35 4.81
4869 5601 5.793030 AGTCTTAGTATTCAGAATCCCCG 57.207 43.478 0.00 0.00 0.00 5.73
4870 5602 4.039366 AGTCTTAGTATTCAGAATCCCCGC 59.961 45.833 0.00 0.00 0.00 6.13
4911 5643 7.993183 AGTAGTCAGAAAATTTTCTTGGTGAGA 59.007 33.333 27.08 18.15 44.70 3.27
4972 5704 1.348036 ACACTGTACTTCCTTCAGGCC 59.652 52.381 0.00 0.00 34.02 5.19
4989 5721 1.224592 CCTTGAATAGGCCCGCACT 59.775 57.895 0.00 0.00 37.17 4.40
4990 5722 0.468226 CCTTGAATAGGCCCGCACTA 59.532 55.000 0.00 0.00 37.17 2.74
4991 5723 1.072331 CCTTGAATAGGCCCGCACTAT 59.928 52.381 0.00 0.00 37.17 2.12
4992 5724 2.146342 CTTGAATAGGCCCGCACTATG 58.854 52.381 0.00 0.00 31.81 2.23
5029 5761 8.071967 GTGTTGTTTAGGTCTGGTAATTTGTAC 58.928 37.037 0.00 0.00 0.00 2.90
5055 5789 3.578688 CTGCCATACAGTTCTTTTTGCC 58.421 45.455 0.00 0.00 41.86 4.52
5061 5795 5.221224 CCATACAGTTCTTTTTGCCTGTTCA 60.221 40.000 0.00 0.00 38.91 3.18
5063 5797 4.685924 ACAGTTCTTTTTGCCTGTTCATG 58.314 39.130 0.00 0.00 34.64 3.07
5064 5798 4.053295 CAGTTCTTTTTGCCTGTTCATGG 58.947 43.478 0.00 0.00 0.00 3.66
5066 5800 4.892934 AGTTCTTTTTGCCTGTTCATGGTA 59.107 37.500 0.00 0.00 0.00 3.25
5067 5801 5.539955 AGTTCTTTTTGCCTGTTCATGGTAT 59.460 36.000 0.00 0.00 0.00 2.73
5068 5802 6.041979 AGTTCTTTTTGCCTGTTCATGGTATT 59.958 34.615 0.00 0.00 0.00 1.89
5069 5803 6.418057 TCTTTTTGCCTGTTCATGGTATTT 57.582 33.333 0.00 0.00 0.00 1.40
5070 5804 6.825610 TCTTTTTGCCTGTTCATGGTATTTT 58.174 32.000 0.00 0.00 0.00 1.82
5071 5805 6.928492 TCTTTTTGCCTGTTCATGGTATTTTC 59.072 34.615 0.00 0.00 0.00 2.29
5072 5806 5.798125 TTTGCCTGTTCATGGTATTTTCA 57.202 34.783 0.00 0.00 0.00 2.69
5073 5807 5.798125 TTGCCTGTTCATGGTATTTTCAA 57.202 34.783 0.00 0.00 0.00 2.69
5074 5808 5.999205 TGCCTGTTCATGGTATTTTCAAT 57.001 34.783 0.00 0.00 0.00 2.57
5075 5809 6.357579 TGCCTGTTCATGGTATTTTCAATT 57.642 33.333 0.00 0.00 0.00 2.32
5076 5810 6.397272 TGCCTGTTCATGGTATTTTCAATTC 58.603 36.000 0.00 0.00 0.00 2.17
5077 5811 5.812127 GCCTGTTCATGGTATTTTCAATTCC 59.188 40.000 0.00 0.00 0.00 3.01
5078 5812 6.351286 GCCTGTTCATGGTATTTTCAATTCCT 60.351 38.462 0.00 0.00 0.00 3.36
5079 5813 7.037438 CCTGTTCATGGTATTTTCAATTCCTG 58.963 38.462 0.00 0.00 0.00 3.86
5080 5814 6.397272 TGTTCATGGTATTTTCAATTCCTGC 58.603 36.000 0.00 0.00 0.00 4.85
5081 5815 6.014755 TGTTCATGGTATTTTCAATTCCTGCA 60.015 34.615 0.00 0.00 0.00 4.41
5082 5816 6.795144 TCATGGTATTTTCAATTCCTGCAT 57.205 33.333 0.00 0.00 0.00 3.96
5083 5817 6.575267 TCATGGTATTTTCAATTCCTGCATG 58.425 36.000 0.00 0.00 0.00 4.06
5084 5818 6.380560 TCATGGTATTTTCAATTCCTGCATGA 59.619 34.615 0.00 0.00 0.00 3.07
5085 5819 5.964758 TGGTATTTTCAATTCCTGCATGAC 58.035 37.500 0.00 0.00 0.00 3.06
5086 5820 5.105392 TGGTATTTTCAATTCCTGCATGACC 60.105 40.000 0.00 0.00 0.00 4.02
5087 5821 3.959535 TTTTCAATTCCTGCATGACCC 57.040 42.857 0.00 0.00 0.00 4.46
5088 5822 2.601240 TTCAATTCCTGCATGACCCA 57.399 45.000 0.00 0.00 0.00 4.51
5107 5841 3.128589 CCCAACCTGATGGATTGTAAACG 59.871 47.826 0.00 0.00 43.54 3.60
5146 5880 1.128692 GCAACATGTACTTCAGACGCC 59.871 52.381 0.00 0.00 0.00 5.68
5188 5924 3.072330 TCTGGTGCAATTTGTACTCCTCA 59.928 43.478 15.73 6.01 33.35 3.86
5276 6012 1.300156 GCATCATCCGCGCACTAGA 60.300 57.895 8.75 0.00 0.00 2.43
5285 6021 1.467875 CGCGCACTAGAGTATGTGTC 58.532 55.000 8.75 0.00 36.63 3.67
5306 6042 3.376859 TCGAGTGCGCATGGAAATAAAAT 59.623 39.130 15.91 0.00 37.46 1.82
5308 6044 4.671377 GAGTGCGCATGGAAATAAAATCA 58.329 39.130 15.91 0.00 0.00 2.57
5319 6055 3.732048 AATAAAATCACGAGGGTGGGT 57.268 42.857 0.00 0.00 44.50 4.51
5320 6056 2.773993 TAAAATCACGAGGGTGGGTC 57.226 50.000 0.00 0.00 44.50 4.46
5321 6057 1.064825 AAAATCACGAGGGTGGGTCT 58.935 50.000 0.00 0.00 44.50 3.85
5322 6058 0.324943 AAATCACGAGGGTGGGTCTG 59.675 55.000 0.00 0.00 44.50 3.51
5323 6059 1.553690 AATCACGAGGGTGGGTCTGG 61.554 60.000 0.00 0.00 44.50 3.86
5324 6060 4.394712 CACGAGGGTGGGTCTGGC 62.395 72.222 0.00 0.00 40.58 4.85
5325 6061 4.640690 ACGAGGGTGGGTCTGGCT 62.641 66.667 0.00 0.00 0.00 4.75
5326 6062 4.087892 CGAGGGTGGGTCTGGCTG 62.088 72.222 0.00 0.00 0.00 4.85
5327 6063 3.721706 GAGGGTGGGTCTGGCTGG 61.722 72.222 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 117 8.674263 ATGATCACAAGATTTAGACCATCTTC 57.326 34.615 0.00 0.00 38.67 2.87
146 151 8.732746 AGCGAGTATTCATTAAACCAATAACT 57.267 30.769 0.00 0.00 0.00 2.24
151 156 4.569162 CGGAGCGAGTATTCATTAAACCAA 59.431 41.667 0.00 0.00 0.00 3.67
184 189 9.582431 TCCGTATCTAGACAAATTTAAGACAAG 57.418 33.333 0.00 0.00 0.00 3.16
245 254 8.927675 ATATTATCAACGCCCCAAATTACTTA 57.072 30.769 0.00 0.00 0.00 2.24
271 280 6.151648 AGTCACAACCCACATCATCATAAAAG 59.848 38.462 0.00 0.00 0.00 2.27
390 675 3.491104 GCCAGATACCACTAGTGTACAGC 60.491 52.174 21.18 10.59 0.00 4.40
442 727 2.296190 GTCTCGGCTTTGGATTTGGTTT 59.704 45.455 0.00 0.00 0.00 3.27
618 903 0.673985 AAGCCAAAACGAGCTTTCCC 59.326 50.000 0.00 0.00 46.99 3.97
624 909 2.288152 TGGATTTCAAGCCAAAACGAGC 60.288 45.455 0.00 0.00 42.35 5.03
638 923 2.239907 AGGGAGTACTGGCTTGGATTTC 59.760 50.000 0.00 0.00 0.00 2.17
650 939 2.481441 TGATGATGGCAAGGGAGTACT 58.519 47.619 0.00 0.00 0.00 2.73
766 1055 0.103937 GGAAGAGACCCTGATCAGCG 59.896 60.000 17.76 11.70 0.00 5.18
770 1059 1.419381 GGGAGGAAGAGACCCTGATC 58.581 60.000 0.00 0.00 40.39 2.92
771 1060 0.030603 GGGGAGGAAGAGACCCTGAT 60.031 60.000 0.00 0.00 42.86 2.90
772 1061 1.392534 GGGGAGGAAGAGACCCTGA 59.607 63.158 0.00 0.00 42.86 3.86
778 1067 0.252742 GGTCTTGGGGGAGGAAGAGA 60.253 60.000 0.00 0.00 0.00 3.10
788 1077 2.825836 GCGCAGATGGTCTTGGGG 60.826 66.667 0.30 0.00 0.00 4.96
843 1136 4.410743 GCCTCACCTTTGCTGCGC 62.411 66.667 0.00 0.00 0.00 6.09
844 1137 2.192608 GAAGCCTCACCTTTGCTGCG 62.193 60.000 0.00 0.00 35.08 5.18
850 1143 1.349357 GAGTCAGGAAGCCTCACCTTT 59.651 52.381 0.00 0.00 33.91 3.11
851 1144 0.980423 GAGTCAGGAAGCCTCACCTT 59.020 55.000 0.00 0.00 33.91 3.50
868 1161 3.245797 CACAGTAACACAGATGACGGAG 58.754 50.000 0.00 0.00 0.00 4.63
869 1162 2.626266 ACACAGTAACACAGATGACGGA 59.374 45.455 0.00 0.00 0.00 4.69
872 1165 4.330074 GGCATACACAGTAACACAGATGAC 59.670 45.833 0.00 0.00 0.00 3.06
873 1166 4.222810 AGGCATACACAGTAACACAGATGA 59.777 41.667 0.00 0.00 0.00 2.92
874 1167 4.507710 AGGCATACACAGTAACACAGATG 58.492 43.478 0.00 0.00 0.00 2.90
875 1168 4.383118 GGAGGCATACACAGTAACACAGAT 60.383 45.833 0.00 0.00 0.00 2.90
876 1169 3.056107 GGAGGCATACACAGTAACACAGA 60.056 47.826 0.00 0.00 0.00 3.41
877 1170 3.262420 GGAGGCATACACAGTAACACAG 58.738 50.000 0.00 0.00 0.00 3.66
879 1172 2.268298 CGGAGGCATACACAGTAACAC 58.732 52.381 0.00 0.00 0.00 3.32
880 1173 1.404986 GCGGAGGCATACACAGTAACA 60.405 52.381 0.00 0.00 39.62 2.41
881 1174 1.287425 GCGGAGGCATACACAGTAAC 58.713 55.000 0.00 0.00 39.62 2.50
882 1175 3.752796 GCGGAGGCATACACAGTAA 57.247 52.632 0.00 0.00 39.62 2.24
908 1201 2.741486 TAGCACAAACGGTCAGGCCC 62.741 60.000 0.00 0.00 0.00 5.80
927 1220 4.278170 TCAAGCGAAACCAGATTTGACATT 59.722 37.500 0.00 0.00 0.00 2.71
943 1236 2.454832 CTTGCCCCTGACTCAAGCGA 62.455 60.000 0.00 0.00 32.07 4.93
944 1237 2.032528 TTGCCCCTGACTCAAGCG 59.967 61.111 0.00 0.00 0.00 4.68
945 1238 0.250901 TTCTTGCCCCTGACTCAAGC 60.251 55.000 0.00 0.00 37.64 4.01
946 1239 1.072965 ACTTCTTGCCCCTGACTCAAG 59.927 52.381 0.00 0.00 38.73 3.02
947 1240 1.140312 ACTTCTTGCCCCTGACTCAA 58.860 50.000 0.00 0.00 0.00 3.02
948 1241 0.397941 CACTTCTTGCCCCTGACTCA 59.602 55.000 0.00 0.00 0.00 3.41
949 1242 0.687354 TCACTTCTTGCCCCTGACTC 59.313 55.000 0.00 0.00 0.00 3.36
950 1243 0.689623 CTCACTTCTTGCCCCTGACT 59.310 55.000 0.00 0.00 0.00 3.41
951 1244 0.957888 GCTCACTTCTTGCCCCTGAC 60.958 60.000 0.00 0.00 0.00 3.51
952 1245 1.376466 GCTCACTTCTTGCCCCTGA 59.624 57.895 0.00 0.00 0.00 3.86
958 1251 2.880890 TCTCCTTTTGCTCACTTCTTGC 59.119 45.455 0.00 0.00 0.00 4.01
990 1283 2.633657 CGCCGCATAATGACCAGC 59.366 61.111 0.00 0.00 0.00 4.85
991 1284 1.523711 ACCGCCGCATAATGACCAG 60.524 57.895 0.00 0.00 0.00 4.00
1067 1360 1.067354 CATTTGCCCTTTCAGGACTGC 60.067 52.381 0.00 0.00 37.67 4.40
1078 1371 0.690762 ACAGACGTACCATTTGCCCT 59.309 50.000 0.00 0.00 0.00 5.19
1094 1387 4.142730 GCATGCTCTTCCAGTAAAGAACAG 60.143 45.833 11.37 0.00 35.47 3.16
1097 1390 3.347216 GGCATGCTCTTCCAGTAAAGAA 58.653 45.455 18.92 0.00 34.95 2.52
1098 1391 2.356125 GGGCATGCTCTTCCAGTAAAGA 60.356 50.000 18.92 0.00 34.22 2.52
1099 1392 2.019984 GGGCATGCTCTTCCAGTAAAG 58.980 52.381 18.92 0.00 0.00 1.85
1100 1393 1.635487 AGGGCATGCTCTTCCAGTAAA 59.365 47.619 16.33 0.00 0.00 2.01
1101 1394 1.065199 CAGGGCATGCTCTTCCAGTAA 60.065 52.381 20.07 0.00 0.00 2.24
1102 1395 0.543277 CAGGGCATGCTCTTCCAGTA 59.457 55.000 20.07 0.00 0.00 2.74
1103 1396 1.302285 CAGGGCATGCTCTTCCAGT 59.698 57.895 20.07 0.00 0.00 4.00
1104 1397 4.237445 CAGGGCATGCTCTTCCAG 57.763 61.111 20.07 2.06 0.00 3.86
1126 1419 5.035443 ACTCATTTATACGTTCAGACTCGC 58.965 41.667 0.00 0.00 0.00 5.03
1127 1420 7.485277 AGAAACTCATTTATACGTTCAGACTCG 59.515 37.037 0.00 0.00 0.00 4.18
1130 1423 8.373992 GTCAGAAACTCATTTATACGTTCAGAC 58.626 37.037 0.00 0.00 0.00 3.51
1138 1431 8.865001 GTCAGTCAGTCAGAAACTCATTTATAC 58.135 37.037 0.00 0.00 35.45 1.47
1153 1446 2.301009 AGCATGATGTGTCAGTCAGTCA 59.699 45.455 0.00 0.00 37.87 3.41
1157 1450 2.038820 TGGAAGCATGATGTGTCAGTCA 59.961 45.455 0.00 0.00 37.87 3.41
1164 1457 2.555325 ACAAGTGTGGAAGCATGATGTG 59.445 45.455 0.00 0.00 0.00 3.21
1173 1466 4.816385 ACTGAACATGTACAAGTGTGGAAG 59.184 41.667 4.21 5.05 0.00 3.46
1177 1470 5.064579 TGACAACTGAACATGTACAAGTGTG 59.935 40.000 4.21 0.00 0.00 3.82
1180 1473 6.942532 AATGACAACTGAACATGTACAAGT 57.057 33.333 0.00 0.00 0.00 3.16
1208 1501 7.229506 GCTGGAGTATTTGCATTAGTCCTTTAT 59.770 37.037 22.30 0.00 39.14 1.40
1211 1504 4.884164 GCTGGAGTATTTGCATTAGTCCTT 59.116 41.667 22.30 0.00 39.14 3.36
1213 1506 4.199310 TGCTGGAGTATTTGCATTAGTCC 58.801 43.478 18.04 18.04 38.94 3.85
1219 1512 3.828451 ACAAACTGCTGGAGTATTTGCAT 59.172 39.130 11.99 0.00 33.09 3.96
1227 1520 5.720041 TCCTAATAGTACAAACTGCTGGAGT 59.280 40.000 0.00 0.00 36.36 3.85
1228 1521 6.222038 TCCTAATAGTACAAACTGCTGGAG 57.778 41.667 0.00 0.00 36.36 3.86
1229 1522 6.614694 TTCCTAATAGTACAAACTGCTGGA 57.385 37.500 0.00 0.00 36.36 3.86
1230 1523 7.552687 TCAATTCCTAATAGTACAAACTGCTGG 59.447 37.037 0.00 0.00 36.36 4.85
1231 1524 8.492673 TCAATTCCTAATAGTACAAACTGCTG 57.507 34.615 0.00 0.00 36.36 4.41
1259 1552 2.501223 TTACTCGCGCAGTCCCTTGG 62.501 60.000 8.75 0.00 36.43 3.61
1271 1564 0.107654 AGCAGGGGTGAATTACTCGC 60.108 55.000 0.00 0.00 0.00 5.03
1273 1566 2.436173 AGCTAGCAGGGGTGAATTACTC 59.564 50.000 18.83 0.00 0.00 2.59
1274 1567 2.482494 AGCTAGCAGGGGTGAATTACT 58.518 47.619 18.83 0.00 0.00 2.24
1293 1586 6.058183 ACAAGTATGCCCAAAGCTCTATAAG 58.942 40.000 0.00 0.00 44.23 1.73
1295 1588 5.366768 AGACAAGTATGCCCAAAGCTCTATA 59.633 40.000 0.00 0.00 44.23 1.31
1392 1732 9.208022 AGTTGTGTATCGCTATTATACGTACTA 57.792 33.333 0.00 0.00 33.37 1.82
1393 1733 8.092521 AGTTGTGTATCGCTATTATACGTACT 57.907 34.615 0.00 0.00 33.37 2.73
1394 1734 8.719478 AAGTTGTGTATCGCTATTATACGTAC 57.281 34.615 0.00 0.00 33.37 3.67
1395 1735 9.172820 CAAAGTTGTGTATCGCTATTATACGTA 57.827 33.333 0.00 0.00 33.37 3.57
1396 1736 7.703621 ACAAAGTTGTGTATCGCTATTATACGT 59.296 33.333 0.00 0.00 40.49 3.57
1398 1738 9.632969 CAACAAAGTTGTGTATCGCTATTATAC 57.367 33.333 0.00 0.00 41.31 1.47
1399 1739 8.822855 CCAACAAAGTTGTGTATCGCTATTATA 58.177 33.333 8.83 0.00 41.31 0.98
1400 1740 7.201696 CCCAACAAAGTTGTGTATCGCTATTAT 60.202 37.037 8.83 0.00 41.31 1.28
1401 1741 6.092944 CCCAACAAAGTTGTGTATCGCTATTA 59.907 38.462 8.83 0.00 41.31 0.98
1402 1742 5.106317 CCCAACAAAGTTGTGTATCGCTATT 60.106 40.000 8.83 0.00 41.31 1.73
1411 1859 3.181480 GCATGTACCCAACAAAGTTGTGT 60.181 43.478 8.83 6.24 42.70 3.72
1448 1896 5.809562 CCTGTTTCAGTCAACTATCTGCTAG 59.190 44.000 0.00 0.00 0.00 3.42
1472 1920 1.466167 CCATGTGACAGTACAGCTTGC 59.534 52.381 0.00 0.00 33.44 4.01
1476 1924 2.751166 AGACCATGTGACAGTACAGC 57.249 50.000 0.00 0.00 33.44 4.40
1524 1972 3.248602 ACTTCAAGCTTGACGTTGATGAC 59.751 43.478 27.62 0.00 36.42 3.06
1558 2006 7.563924 AGTCTAATTGGTAGTTACAGATAGCCA 59.436 37.037 0.00 0.00 0.00 4.75
1600 2048 7.564793 ACCTTGCATAATAGACTGTCATGTTA 58.435 34.615 10.88 6.33 0.00 2.41
1617 2065 2.039084 AGTTTCCTCGAAGACCTTGCAT 59.961 45.455 0.00 0.00 0.00 3.96
1618 2066 1.416401 AGTTTCCTCGAAGACCTTGCA 59.584 47.619 0.00 0.00 0.00 4.08
1619 2067 2.171341 AGTTTCCTCGAAGACCTTGC 57.829 50.000 0.00 0.00 0.00 4.01
1620 2068 3.467803 ACAAGTTTCCTCGAAGACCTTG 58.532 45.455 15.91 15.91 33.75 3.61
1621 2069 3.388350 AGACAAGTTTCCTCGAAGACCTT 59.612 43.478 0.00 0.00 0.00 3.50
1726 2175 8.783660 TCCTTCCATAACTATCATGAACTACT 57.216 34.615 0.00 0.00 0.00 2.57
1827 2285 2.763933 ACACAGAATGCAGAGACACAG 58.236 47.619 0.00 0.00 42.53 3.66
1828 2286 2.916702 ACACAGAATGCAGAGACACA 57.083 45.000 0.00 0.00 42.53 3.72
1830 2288 3.811497 CAGAAACACAGAATGCAGAGACA 59.189 43.478 0.00 0.00 42.53 3.41
1831 2289 3.364764 GCAGAAACACAGAATGCAGAGAC 60.365 47.826 0.00 0.00 42.53 3.36
1832 2290 2.810274 GCAGAAACACAGAATGCAGAGA 59.190 45.455 0.00 0.00 42.53 3.10
1833 2291 2.812591 AGCAGAAACACAGAATGCAGAG 59.187 45.455 0.00 0.00 42.53 3.35
1834 2292 2.551032 CAGCAGAAACACAGAATGCAGA 59.449 45.455 0.00 0.00 42.53 4.26
1835 2293 2.921069 GCAGCAGAAACACAGAATGCAG 60.921 50.000 0.00 0.00 42.53 4.41
1836 2294 1.001048 GCAGCAGAAACACAGAATGCA 60.001 47.619 0.00 0.00 42.53 3.96
1837 2295 1.268899 AGCAGCAGAAACACAGAATGC 59.731 47.619 0.00 0.00 42.53 3.56
1838 2296 2.351447 CCAGCAGCAGAAACACAGAATG 60.351 50.000 0.00 0.00 46.00 2.67
1839 2297 1.884579 CCAGCAGCAGAAACACAGAAT 59.115 47.619 0.00 0.00 0.00 2.40
1859 2317 7.039082 ACCCATATGTTAAAATGGATATGGTGC 60.039 37.037 13.33 0.00 44.62 5.01
1919 2377 1.065410 TGGAGGGAGGTGCTTTTCCA 61.065 55.000 3.90 0.00 35.09 3.53
2120 2578 1.746615 CAGCAACCATACCTGCGCT 60.747 57.895 9.73 0.00 43.51 5.92
2123 2581 0.254747 TACCCAGCAACCATACCTGC 59.745 55.000 0.00 0.00 38.91 4.85
2137 2595 7.257790 ACATTTGCAGATAGCTATATACCCA 57.742 36.000 6.13 0.00 45.94 4.51
2138 2596 9.838339 ATTACATTTGCAGATAGCTATATACCC 57.162 33.333 6.13 0.00 45.94 3.69
2256 2731 2.481185 CCCAAGCATGTCAACAAAATGC 59.519 45.455 0.00 0.00 45.62 3.56
2457 2932 8.011106 AGCAAAATTTCAAAAAGAATATGCACG 58.989 29.630 0.00 0.00 35.83 5.34
2651 3126 7.114953 GCAATTTTAGCTTTGTAGTCCTCAAAC 59.885 37.037 0.00 0.00 32.48 2.93
2874 3349 0.763035 ACCGAACAAGGCCTTACTGT 59.237 50.000 20.00 10.67 33.69 3.55
2878 3353 1.231958 CGCAACCGAACAAGGCCTTA 61.232 55.000 20.00 0.00 36.29 2.69
2879 3354 2.551912 CGCAACCGAACAAGGCCTT 61.552 57.895 13.78 13.78 36.29 4.35
2880 3355 2.978010 CGCAACCGAACAAGGCCT 60.978 61.111 0.00 0.00 36.29 5.19
2881 3356 3.284449 ACGCAACCGAACAAGGCC 61.284 61.111 0.00 0.00 38.29 5.19
2882 3357 1.500512 TACACGCAACCGAACAAGGC 61.501 55.000 0.00 0.00 38.29 4.35
2883 3358 0.938713 TTACACGCAACCGAACAAGG 59.061 50.000 0.00 0.00 38.29 3.61
2884 3359 2.741122 TTTACACGCAACCGAACAAG 57.259 45.000 0.00 0.00 38.29 3.16
2885 3360 2.031857 GGATTTACACGCAACCGAACAA 60.032 45.455 0.00 0.00 38.29 2.83
2886 3361 1.532007 GGATTTACACGCAACCGAACA 59.468 47.619 0.00 0.00 38.29 3.18
2887 3362 1.462869 CGGATTTACACGCAACCGAAC 60.463 52.381 0.00 0.00 42.40 3.95
2888 3363 0.791422 CGGATTTACACGCAACCGAA 59.209 50.000 0.00 0.00 42.40 4.30
2889 3364 0.038435 TCGGATTTACACGCAACCGA 60.038 50.000 0.00 0.00 45.36 4.69
2890 3365 0.368907 CTCGGATTTACACGCAACCG 59.631 55.000 0.00 0.00 41.39 4.44
2891 3366 1.127951 CACTCGGATTTACACGCAACC 59.872 52.381 0.00 0.00 0.00 3.77
2892 3367 1.127951 CCACTCGGATTTACACGCAAC 59.872 52.381 0.00 0.00 0.00 4.17
2893 3368 1.001068 TCCACTCGGATTTACACGCAA 59.999 47.619 0.00 0.00 35.91 4.85
2894 3369 0.604073 TCCACTCGGATTTACACGCA 59.396 50.000 0.00 0.00 35.91 5.24
2895 3370 3.429043 TCCACTCGGATTTACACGC 57.571 52.632 0.00 0.00 35.91 5.34
2905 3380 0.328258 AACCCCTTCAATCCACTCGG 59.672 55.000 0.00 0.00 0.00 4.63
2906 3381 1.812571 CAAACCCCTTCAATCCACTCG 59.187 52.381 0.00 0.00 0.00 4.18
2907 3382 3.084786 CTCAAACCCCTTCAATCCACTC 58.915 50.000 0.00 0.00 0.00 3.51
2908 3383 2.225117 CCTCAAACCCCTTCAATCCACT 60.225 50.000 0.00 0.00 0.00 4.00
2909 3384 2.171003 CCTCAAACCCCTTCAATCCAC 58.829 52.381 0.00 0.00 0.00 4.02
2910 3385 2.041620 CTCCTCAAACCCCTTCAATCCA 59.958 50.000 0.00 0.00 0.00 3.41
2911 3386 2.621668 CCTCCTCAAACCCCTTCAATCC 60.622 54.545 0.00 0.00 0.00 3.01
2912 3387 2.308866 TCCTCCTCAAACCCCTTCAATC 59.691 50.000 0.00 0.00 0.00 2.67
2913 3388 2.358258 TCCTCCTCAAACCCCTTCAAT 58.642 47.619 0.00 0.00 0.00 2.57
2914 3389 1.827792 TCCTCCTCAAACCCCTTCAA 58.172 50.000 0.00 0.00 0.00 2.69
2915 3390 2.059756 ATCCTCCTCAAACCCCTTCA 57.940 50.000 0.00 0.00 0.00 3.02
2916 3391 3.458044 AAATCCTCCTCAAACCCCTTC 57.542 47.619 0.00 0.00 0.00 3.46
2917 3392 5.084519 GTTTAAATCCTCCTCAAACCCCTT 58.915 41.667 0.00 0.00 0.00 3.95
2918 3393 4.510386 GGTTTAAATCCTCCTCAAACCCCT 60.510 45.833 3.66 0.00 41.38 4.79
2919 3394 3.767673 GGTTTAAATCCTCCTCAAACCCC 59.232 47.826 3.66 0.00 41.38 4.95
2920 3395 4.673968 AGGTTTAAATCCTCCTCAAACCC 58.326 43.478 10.14 0.00 46.02 4.11
2921 3396 5.899120 GAGGTTTAAATCCTCCTCAAACC 57.101 43.478 18.63 6.45 45.48 3.27
2930 3405 9.807921 TTTTGACATAGAAGAGGTTTAAATCCT 57.192 29.630 8.52 8.52 38.09 3.24
2938 3413 9.178758 GGTTCATATTTTGACATAGAAGAGGTT 57.821 33.333 0.00 0.00 32.84 3.50
2939 3414 8.328758 TGGTTCATATTTTGACATAGAAGAGGT 58.671 33.333 0.00 0.00 32.84 3.85
2940 3415 8.737168 TGGTTCATATTTTGACATAGAAGAGG 57.263 34.615 0.00 0.00 32.84 3.69
2943 3418 9.956720 GGATTGGTTCATATTTTGACATAGAAG 57.043 33.333 0.00 0.00 32.84 2.85
2944 3419 9.699410 AGGATTGGTTCATATTTTGACATAGAA 57.301 29.630 0.00 0.00 32.84 2.10
2945 3420 9.699410 AAGGATTGGTTCATATTTTGACATAGA 57.301 29.630 0.00 0.00 32.84 1.98
2946 3421 9.740239 CAAGGATTGGTTCATATTTTGACATAG 57.260 33.333 0.00 0.00 43.94 2.23
2965 3440 0.262876 GGAGGGGATTGGCAAGGATT 59.737 55.000 5.96 0.00 0.00 3.01
2966 3441 0.925720 TGGAGGGGATTGGCAAGGAT 60.926 55.000 5.96 0.00 0.00 3.24
2967 3442 1.145900 TTGGAGGGGATTGGCAAGGA 61.146 55.000 5.96 0.00 0.00 3.36
2968 3443 0.031817 ATTGGAGGGGATTGGCAAGG 60.032 55.000 5.96 0.00 0.00 3.61
2969 3444 1.406903 GATTGGAGGGGATTGGCAAG 58.593 55.000 5.96 0.00 0.00 4.01
2970 3445 0.032217 GGATTGGAGGGGATTGGCAA 60.032 55.000 0.68 0.68 0.00 4.52
2971 3446 0.925720 AGGATTGGAGGGGATTGGCA 60.926 55.000 0.00 0.00 0.00 4.92
2972 3447 0.178978 GAGGATTGGAGGGGATTGGC 60.179 60.000 0.00 0.00 0.00 4.52
2973 3448 1.527457 AGAGGATTGGAGGGGATTGG 58.473 55.000 0.00 0.00 0.00 3.16
2974 3449 2.423947 CCAAGAGGATTGGAGGGGATTG 60.424 54.545 0.12 0.00 42.06 2.67
2975 3450 1.855599 CCAAGAGGATTGGAGGGGATT 59.144 52.381 0.12 0.00 42.06 3.01
2976 3451 1.527457 CCAAGAGGATTGGAGGGGAT 58.473 55.000 0.12 0.00 42.06 3.85
2977 3452 0.624500 CCCAAGAGGATTGGAGGGGA 60.625 60.000 8.20 0.00 42.06 4.81
2978 3453 1.925888 CCCAAGAGGATTGGAGGGG 59.074 63.158 8.20 0.00 42.06 4.79
2979 3454 0.624500 TCCCCAAGAGGATTGGAGGG 60.625 60.000 8.20 2.36 42.06 4.30
2980 3455 0.842635 CTCCCCAAGAGGATTGGAGG 59.157 60.000 8.20 7.77 42.06 4.30
2981 3456 1.767681 CTCTCCCCAAGAGGATTGGAG 59.232 57.143 8.20 0.00 46.73 3.86
2982 3457 1.885049 CTCTCCCCAAGAGGATTGGA 58.115 55.000 8.20 0.00 46.73 3.53
2990 3465 2.116238 CGGTTAATCCTCTCCCCAAGA 58.884 52.381 0.00 0.00 0.00 3.02
2991 3466 2.116238 TCGGTTAATCCTCTCCCCAAG 58.884 52.381 0.00 0.00 0.00 3.61
2992 3467 2.237893 GTTCGGTTAATCCTCTCCCCAA 59.762 50.000 0.00 0.00 0.00 4.12
2993 3468 1.835531 GTTCGGTTAATCCTCTCCCCA 59.164 52.381 0.00 0.00 0.00 4.96
2994 3469 1.835531 TGTTCGGTTAATCCTCTCCCC 59.164 52.381 0.00 0.00 0.00 4.81
2995 3470 3.622166 TTGTTCGGTTAATCCTCTCCC 57.378 47.619 0.00 0.00 0.00 4.30
2996 3471 3.374367 GCTTTGTTCGGTTAATCCTCTCC 59.626 47.826 0.00 0.00 0.00 3.71
2997 3472 3.374367 GGCTTTGTTCGGTTAATCCTCTC 59.626 47.826 0.00 0.00 0.00 3.20
2998 3473 3.009143 AGGCTTTGTTCGGTTAATCCTCT 59.991 43.478 0.00 0.00 0.00 3.69
2999 3474 3.344515 AGGCTTTGTTCGGTTAATCCTC 58.655 45.455 0.00 0.00 0.00 3.71
3000 3475 3.434940 AGGCTTTGTTCGGTTAATCCT 57.565 42.857 0.00 0.00 0.00 3.24
3001 3476 4.939439 TCTTAGGCTTTGTTCGGTTAATCC 59.061 41.667 0.00 0.00 0.00 3.01
3002 3477 6.490566 TTCTTAGGCTTTGTTCGGTTAATC 57.509 37.500 0.00 0.00 0.00 1.75
3003 3478 6.713450 TCTTTCTTAGGCTTTGTTCGGTTAAT 59.287 34.615 0.00 0.00 0.00 1.40
3004 3479 6.056884 TCTTTCTTAGGCTTTGTTCGGTTAA 58.943 36.000 0.00 0.00 0.00 2.01
3005 3480 5.613329 TCTTTCTTAGGCTTTGTTCGGTTA 58.387 37.500 0.00 0.00 0.00 2.85
3006 3481 4.457466 TCTTTCTTAGGCTTTGTTCGGTT 58.543 39.130 0.00 0.00 0.00 4.44
3007 3482 4.081322 TCTTTCTTAGGCTTTGTTCGGT 57.919 40.909 0.00 0.00 0.00 4.69
3008 3483 5.629079 ATTCTTTCTTAGGCTTTGTTCGG 57.371 39.130 0.00 0.00 0.00 4.30
3009 3484 6.903419 AGAATTCTTTCTTAGGCTTTGTTCG 58.097 36.000 0.88 0.00 39.18 3.95
3010 3485 9.004717 ACTAGAATTCTTTCTTAGGCTTTGTTC 57.995 33.333 14.36 0.00 42.29 3.18
3011 3486 8.787852 CACTAGAATTCTTTCTTAGGCTTTGTT 58.212 33.333 14.36 0.00 42.29 2.83
3012 3487 8.157476 TCACTAGAATTCTTTCTTAGGCTTTGT 58.843 33.333 14.36 0.00 42.29 2.83
3013 3488 8.553459 TCACTAGAATTCTTTCTTAGGCTTTG 57.447 34.615 14.36 0.00 42.29 2.77
3014 3489 9.004717 GTTCACTAGAATTCTTTCTTAGGCTTT 57.995 33.333 14.36 0.00 42.29 3.51
3015 3490 8.379331 AGTTCACTAGAATTCTTTCTTAGGCTT 58.621 33.333 14.36 0.00 42.29 4.35
3016 3491 7.912719 AGTTCACTAGAATTCTTTCTTAGGCT 58.087 34.615 14.36 0.00 42.29 4.58
3017 3492 8.554835 AAGTTCACTAGAATTCTTTCTTAGGC 57.445 34.615 14.36 0.00 42.29 3.93
3018 3493 9.712305 TGAAGTTCACTAGAATTCTTTCTTAGG 57.288 33.333 14.36 0.00 42.29 2.69
3028 3503 8.281212 ACACAAAACTGAAGTTCACTAGAATT 57.719 30.769 0.08 0.00 37.25 2.17
3092 3567 9.555727 GTTTGCCATATCTATTCAGTACCTAAA 57.444 33.333 0.00 0.00 0.00 1.85
3093 3568 8.934697 AGTTTGCCATATCTATTCAGTACCTAA 58.065 33.333 0.00 0.00 0.00 2.69
3094 3569 8.492415 AGTTTGCCATATCTATTCAGTACCTA 57.508 34.615 0.00 0.00 0.00 3.08
3095 3570 7.380423 AGTTTGCCATATCTATTCAGTACCT 57.620 36.000 0.00 0.00 0.00 3.08
3126 3601 4.641989 GCTTATGTGTTGGAATCAGGTGAT 59.358 41.667 0.00 0.00 36.07 3.06
3143 3618 1.202639 TGGCATAGGACACCGCTTATG 60.203 52.381 0.00 0.00 0.00 1.90
3149 3624 1.153188 TGCATGGCATAGGACACCG 60.153 57.895 0.00 0.00 32.32 4.94
3205 3680 2.706890 ACAACCCCAAAGCTATACACG 58.293 47.619 0.00 0.00 0.00 4.49
3220 3695 2.587522 AGGAGCTCCAAAAGAACAACC 58.412 47.619 33.90 3.08 38.89 3.77
3298 3773 5.371526 AGAAGTGAATGCATACATACCCAG 58.628 41.667 0.00 0.00 34.62 4.45
3323 3798 7.921786 TCTTGTTGAATAATAGGGTGAACAG 57.078 36.000 0.00 0.00 0.00 3.16
3355 3830 1.349026 TGACAGCTCTTCCCCTTTGAG 59.651 52.381 0.00 0.00 0.00 3.02
3425 3900 9.998106 GCCTCAACCTTATTGAGTCTATTATTA 57.002 33.333 13.96 0.00 43.19 0.98
3426 3901 8.718656 AGCCTCAACCTTATTGAGTCTATTATT 58.281 33.333 13.96 0.00 43.19 1.40
3437 3912 4.622701 GCTGTTAGCCTCAACCTTATTG 57.377 45.455 0.00 0.00 34.48 1.90
3465 3940 9.935241 AATATATTACAGCTTATGTCCTGTGAG 57.065 33.333 0.00 0.00 42.70 3.51
3486 3961 6.775629 GGGGGTTGAAGTTGAGCATAAATATA 59.224 38.462 0.00 0.00 0.00 0.86
3496 3971 1.956477 CACAAGGGGGTTGAAGTTGAG 59.044 52.381 0.00 0.00 38.60 3.02
3507 3982 0.758685 TGCCAGAAAACACAAGGGGG 60.759 55.000 0.00 0.00 0.00 5.40
3599 4074 9.345517 CAAACAACAAAGTTATCCAGATATGTG 57.654 33.333 0.00 0.00 0.00 3.21
3645 4121 9.834628 CTGGTTATAAATTACACGAAACATTGT 57.165 29.630 0.00 0.00 0.00 2.71
3711 4262 5.875359 ACTCTCCGTTTAATCTTGGATCAAC 59.125 40.000 0.00 0.00 0.00 3.18
3764 4315 2.673258 GTTAGGGAGGAGAGAGGAAGG 58.327 57.143 0.00 0.00 0.00 3.46
3772 4323 1.618837 GCATATGCGTTAGGGAGGAGA 59.381 52.381 12.82 0.00 0.00 3.71
3861 4413 6.633500 TTGTAATTGTTGGCCATCTATAGC 57.367 37.500 6.09 5.74 0.00 2.97
3862 4414 7.141363 GCTTTGTAATTGTTGGCCATCTATAG 58.859 38.462 6.09 3.57 0.00 1.31
3905 4458 4.256920 ACATAGTGTTGTTCTCATCAGGC 58.743 43.478 0.00 0.00 0.00 4.85
3953 4506 8.893563 ATGTCCATCCACTTCCTAAATAAAAA 57.106 30.769 0.00 0.00 0.00 1.94
3985 4542 6.830873 AGCTGAAGAATATTTGAGCAAAGT 57.169 33.333 2.15 0.00 39.37 2.66
4006 4563 3.642705 CAGTTTTTCCCTAGCACAAAGC 58.357 45.455 0.00 0.00 46.19 3.51
4007 4564 3.068024 TGCAGTTTTTCCCTAGCACAAAG 59.932 43.478 0.00 0.00 0.00 2.77
4010 4567 2.356665 TGCAGTTTTTCCCTAGCACA 57.643 45.000 0.00 0.00 0.00 4.57
4011 4568 3.578688 CAATGCAGTTTTTCCCTAGCAC 58.421 45.455 0.00 0.00 34.54 4.40
4034 4598 7.442666 TCCTCAAAGAAAGAAAAACTAGAGCTC 59.557 37.037 5.27 5.27 0.00 4.09
4056 4620 3.019564 CAGAAATGTCCACCCATTCCTC 58.980 50.000 0.00 0.00 34.01 3.71
4065 4629 6.749923 AGCTAAGAAATCAGAAATGTCCAC 57.250 37.500 0.00 0.00 0.00 4.02
4077 4641 7.972277 TGAAGATTGCATCAAAGCTAAGAAATC 59.028 33.333 0.00 0.00 34.99 2.17
4079 4643 7.218228 TGAAGATTGCATCAAAGCTAAGAAA 57.782 32.000 0.00 0.00 34.99 2.52
4080 4644 6.822667 TGAAGATTGCATCAAAGCTAAGAA 57.177 33.333 0.00 0.00 34.99 2.52
4082 4646 6.618811 ACTTGAAGATTGCATCAAAGCTAAG 58.381 36.000 0.00 0.00 35.31 2.18
4086 4650 5.511088 CAACTTGAAGATTGCATCAAAGC 57.489 39.130 0.00 0.00 35.31 3.51
4094 4658 3.581024 TCATGGCAACTTGAAGATTGC 57.419 42.857 17.95 17.95 46.62 3.56
4110 4674 5.043248 GCGGATTTTCCCTAACAATTCATG 58.957 41.667 0.00 0.00 31.13 3.07
4119 4683 2.733956 AGCAATGCGGATTTTCCCTAA 58.266 42.857 0.00 0.00 31.13 2.69
4131 4695 4.556135 CACAATTCTAGTTCAAGCAATGCG 59.444 41.667 0.00 0.00 0.00 4.73
4182 4750 1.226802 CGCGAGCTGCACAGATAGT 60.227 57.895 0.00 0.00 46.97 2.12
4203 4771 4.996434 ACACAGAGCGCTGCCACC 62.996 66.667 18.48 0.00 46.26 4.61
4212 4780 1.656095 GACTCGTATTGCACACAGAGC 59.344 52.381 14.09 0.00 0.00 4.09
4239 4807 4.895889 ACTACAATGCTCATGCTAGGTCTA 59.104 41.667 0.00 0.00 40.48 2.59
4245 4813 4.333649 GCTTTGACTACAATGCTCATGCTA 59.666 41.667 11.59 0.00 46.51 3.49
4275 4843 7.450323 TGCTGAGGTTTATTAATAATAAGGGGC 59.550 37.037 8.70 10.00 35.00 5.80
4284 4852 5.295787 CGGTTGCTGCTGAGGTTTATTAATA 59.704 40.000 0.00 0.00 0.00 0.98
4285 4853 4.096382 CGGTTGCTGCTGAGGTTTATTAAT 59.904 41.667 0.00 0.00 0.00 1.40
4286 4854 3.438781 CGGTTGCTGCTGAGGTTTATTAA 59.561 43.478 0.00 0.00 0.00 1.40
4287 4855 3.006940 CGGTTGCTGCTGAGGTTTATTA 58.993 45.455 0.00 0.00 0.00 0.98
4296 4864 4.704833 GCTCCCGGTTGCTGCTGA 62.705 66.667 0.00 0.00 0.00 4.26
4304 4872 2.203788 TGTCTGGAGCTCCCGGTT 60.204 61.111 29.95 0.00 42.20 4.44
4323 4891 4.697352 ACATGTTGTCAAGTATCTGAAGGC 59.303 41.667 0.00 0.00 0.00 4.35
4352 4920 2.076863 AGCACTTTACATGAACCTCGC 58.923 47.619 0.00 0.00 0.00 5.03
4357 4925 7.328493 GGAAAATTGGTAGCACTTTACATGAAC 59.672 37.037 10.22 0.00 0.00 3.18
4370 4938 1.132453 GCACCGAGGAAAATTGGTAGC 59.868 52.381 0.00 0.00 35.01 3.58
4371 4939 1.396996 CGCACCGAGGAAAATTGGTAG 59.603 52.381 0.00 0.00 35.01 3.18
4389 4957 4.043761 CAAAGTTGCATCAAAATGACGC 57.956 40.909 0.00 0.00 35.94 5.19
4410 4978 4.408182 AGACAACATATAGACAGGTGGC 57.592 45.455 0.00 0.00 0.00 5.01
4419 4987 9.770097 ATACAACCTGATCAAGACAACATATAG 57.230 33.333 0.00 0.00 0.00 1.31
4460 5028 8.061304 AGGGTGATCCATAAGAATGTGTTATTT 58.939 33.333 0.00 0.00 38.24 1.40
4599 5168 5.008613 GCCTGAAGAACACATAACACAGAAA 59.991 40.000 0.00 0.00 0.00 2.52
4609 5178 2.304180 AGCTACTGCCTGAAGAACACAT 59.696 45.455 0.00 0.00 40.80 3.21
4628 5197 1.831580 AGGTGAAAGGAAGCATCAGC 58.168 50.000 0.00 0.00 40.82 4.26
4629 5198 3.152341 ACAAGGTGAAAGGAAGCATCAG 58.848 45.455 0.00 0.00 0.00 2.90
4722 5453 7.880160 AGCACTTGTGGCATTTTAATCTATA 57.120 32.000 2.81 0.00 0.00 1.31
4723 5454 6.780457 AGCACTTGTGGCATTTTAATCTAT 57.220 33.333 2.81 0.00 0.00 1.98
4724 5455 7.695480 TTAGCACTTGTGGCATTTTAATCTA 57.305 32.000 2.81 0.00 0.00 1.98
4725 5456 6.588719 TTAGCACTTGTGGCATTTTAATCT 57.411 33.333 2.81 0.00 0.00 2.40
4726 5457 6.237915 GCATTAGCACTTGTGGCATTTTAATC 60.238 38.462 2.81 0.00 41.58 1.75
4727 5458 5.581874 GCATTAGCACTTGTGGCATTTTAAT 59.418 36.000 2.81 0.00 41.58 1.40
4972 5704 2.146342 CATAGTGCGGGCCTATTCAAG 58.854 52.381 0.84 0.00 0.00 3.02
4987 5719 1.219124 CACCAGCCGTGAGCATAGT 59.781 57.895 0.00 0.00 46.20 2.12
4989 5721 0.673333 CAACACCAGCCGTGAGCATA 60.673 55.000 8.44 0.00 46.20 3.14
4990 5722 1.968017 CAACACCAGCCGTGAGCAT 60.968 57.895 8.44 0.00 46.20 3.79
4991 5723 2.591429 CAACACCAGCCGTGAGCA 60.591 61.111 8.44 0.00 46.20 4.26
4992 5724 1.724582 AAACAACACCAGCCGTGAGC 61.725 55.000 8.44 0.00 46.20 4.26
5012 5744 4.042934 AGGCAAGTACAAATTACCAGACCT 59.957 41.667 0.00 0.00 0.00 3.85
5055 5789 6.532657 GCAGGAATTGAAAATACCATGAACAG 59.467 38.462 0.00 0.00 0.00 3.16
5061 5795 6.407299 GGTCATGCAGGAATTGAAAATACCAT 60.407 38.462 0.92 0.00 0.00 3.55
5063 5797 5.351458 GGTCATGCAGGAATTGAAAATACC 58.649 41.667 0.92 0.00 0.00 2.73
5064 5798 5.105392 TGGGTCATGCAGGAATTGAAAATAC 60.105 40.000 0.92 0.00 0.00 1.89
5066 5800 3.839490 TGGGTCATGCAGGAATTGAAAAT 59.161 39.130 0.92 0.00 0.00 1.82
5067 5801 3.237746 TGGGTCATGCAGGAATTGAAAA 58.762 40.909 0.92 0.00 0.00 2.29
5068 5802 2.886913 TGGGTCATGCAGGAATTGAAA 58.113 42.857 0.92 0.00 0.00 2.69
5069 5803 2.562298 GTTGGGTCATGCAGGAATTGAA 59.438 45.455 0.92 0.00 0.00 2.69
5070 5804 2.170166 GTTGGGTCATGCAGGAATTGA 58.830 47.619 0.92 0.00 0.00 2.57
5071 5805 1.205417 GGTTGGGTCATGCAGGAATTG 59.795 52.381 0.92 0.00 0.00 2.32
5072 5806 1.077663 AGGTTGGGTCATGCAGGAATT 59.922 47.619 0.92 0.00 0.00 2.17
5073 5807 0.706433 AGGTTGGGTCATGCAGGAAT 59.294 50.000 0.92 0.00 0.00 3.01
5074 5808 0.251297 CAGGTTGGGTCATGCAGGAA 60.251 55.000 0.92 0.00 0.00 3.36
5075 5809 1.133181 TCAGGTTGGGTCATGCAGGA 61.133 55.000 0.00 0.00 0.00 3.86
5076 5810 0.033796 ATCAGGTTGGGTCATGCAGG 60.034 55.000 0.00 0.00 0.00 4.85
5077 5811 1.100510 CATCAGGTTGGGTCATGCAG 58.899 55.000 0.00 0.00 0.00 4.41
5078 5812 0.323633 CCATCAGGTTGGGTCATGCA 60.324 55.000 0.00 0.00 32.80 3.96
5079 5813 0.034186 TCCATCAGGTTGGGTCATGC 60.034 55.000 0.00 0.00 37.37 4.06
5080 5814 2.691526 CAATCCATCAGGTTGGGTCATG 59.308 50.000 0.00 0.00 37.37 3.07
5081 5815 2.312741 ACAATCCATCAGGTTGGGTCAT 59.687 45.455 0.00 0.00 37.37 3.06
5082 5816 1.710244 ACAATCCATCAGGTTGGGTCA 59.290 47.619 0.00 0.00 37.37 4.02
5083 5817 2.514458 ACAATCCATCAGGTTGGGTC 57.486 50.000 0.00 0.00 37.37 4.46
5084 5818 4.086457 GTTTACAATCCATCAGGTTGGGT 58.914 43.478 0.00 0.00 37.37 4.51
5085 5819 3.128589 CGTTTACAATCCATCAGGTTGGG 59.871 47.826 0.00 0.00 37.37 4.12
5086 5820 3.756434 ACGTTTACAATCCATCAGGTTGG 59.244 43.478 0.00 0.00 38.18 3.77
5087 5821 5.872617 TCTACGTTTACAATCCATCAGGTTG 59.127 40.000 0.00 0.00 35.89 3.77
5088 5822 5.873164 GTCTACGTTTACAATCCATCAGGTT 59.127 40.000 0.00 0.00 35.89 3.50
5123 5857 2.090658 CGTCTGAAGTACATGTTGCGTC 59.909 50.000 2.30 6.39 0.00 5.19
5124 5858 2.058798 CGTCTGAAGTACATGTTGCGT 58.941 47.619 2.30 0.00 0.00 5.24
5125 5859 1.201812 GCGTCTGAAGTACATGTTGCG 60.202 52.381 2.30 0.00 0.00 4.85
5126 5860 1.128692 GGCGTCTGAAGTACATGTTGC 59.871 52.381 2.30 0.00 0.00 4.17
5146 5880 5.333339 CCAGAGTACATGTTTCACTTTCACG 60.333 44.000 2.30 0.00 0.00 4.35
5264 6000 0.380733 CACATACTCTAGTGCGCGGA 59.619 55.000 8.83 0.00 0.00 5.54
5265 6001 0.100682 ACACATACTCTAGTGCGCGG 59.899 55.000 8.83 0.00 39.30 6.46
5276 6012 0.173481 ATGCGCACTCGACACATACT 59.827 50.000 14.90 0.00 38.10 2.12
5285 6021 2.823196 TTTATTTCCATGCGCACTCG 57.177 45.000 14.90 3.86 39.07 4.18
5306 6042 2.603473 CCAGACCCACCCTCGTGA 60.603 66.667 0.00 0.00 43.14 4.35
5308 6044 4.640690 AGCCAGACCCACCCTCGT 62.641 66.667 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.