Multiple sequence alignment - TraesCS7B01G164400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G164400 chr7B 100.000 6408 0 0 1 6408 226906688 226900281 0.000000e+00 11834.0
1 TraesCS7B01G164400 chr7B 84.157 587 47 15 377 951 226997647 226997095 1.580000e-145 527.0
2 TraesCS7B01G164400 chr7B 89.698 398 36 5 2857 3251 505953224 505952829 2.670000e-138 503.0
3 TraesCS7B01G164400 chr7B 90.270 370 28 4 7 372 227038352 227037987 1.620000e-130 477.0
4 TraesCS7B01G164400 chr7B 97.753 89 2 0 3798 3886 440325600 440325688 3.090000e-33 154.0
5 TraesCS7B01G164400 chr7A 93.587 2074 95 20 3885 5954 271377705 271379744 0.000000e+00 3059.0
6 TraesCS7B01G164400 chr7A 96.866 1053 25 5 1804 2850 271376626 271377676 0.000000e+00 1755.0
7 TraesCS7B01G164400 chr7A 99.248 931 6 1 2850 3780 238581032 238581961 0.000000e+00 1679.0
8 TraesCS7B01G164400 chr7A 94.097 847 36 5 949 1794 271375751 271376584 0.000000e+00 1275.0
9 TraesCS7B01G164400 chr7A 92.128 470 16 8 5951 6408 271379954 271380414 1.510000e-180 643.0
10 TraesCS7B01G164400 chr7A 89.116 147 13 3 384 530 271373799 271373942 5.100000e-41 180.0
11 TraesCS7B01G164400 chr7A 79.464 224 6 5 744 951 271375517 271375716 8.720000e-24 122.0
12 TraesCS7B01G164400 chr7A 95.522 67 3 0 5888 5954 271379786 271379852 2.440000e-19 108.0
13 TraesCS7B01G164400 chr7A 91.837 49 4 0 1266 1314 271376031 271376079 1.150000e-07 69.4
14 TraesCS7B01G164400 chr7D 94.329 1922 67 19 949 2850 249793097 249791198 0.000000e+00 2907.0
15 TraesCS7B01G164400 chr7D 95.210 1837 70 12 3885 5715 249791169 249789345 0.000000e+00 2889.0
16 TraesCS7B01G164400 chr7D 92.633 923 55 5 2849 3761 64550918 64551837 0.000000e+00 1315.0
17 TraesCS7B01G164400 chr7D 79.075 454 50 16 5971 6408 249788976 249788552 2.940000e-68 270.0
18 TraesCS7B01G164400 chr7D 86.058 208 22 4 167 371 458201774 458201977 3.890000e-52 217.0
19 TraesCS7B01G164400 chr7D 88.961 154 16 1 381 533 249793544 249793391 8.480000e-44 189.0
20 TraesCS7B01G164400 chr7D 81.304 230 2 8 747 959 249793323 249793118 1.440000e-31 148.0
21 TraesCS7B01G164400 chr7D 81.955 133 20 4 430 561 187245299 187245428 6.790000e-20 110.0
22 TraesCS7B01G164400 chr7D 92.000 50 4 0 1266 1315 249792816 249792767 3.210000e-08 71.3
23 TraesCS7B01G164400 chr7D 100.000 35 0 0 3770 3804 249791201 249791167 1.490000e-06 65.8
24 TraesCS7B01G164400 chr5B 97.614 922 14 2 2849 3770 576871743 576872656 0.000000e+00 1574.0
25 TraesCS7B01G164400 chr5B 88.811 143 16 0 95 237 633824460 633824318 6.600000e-40 176.0
26 TraesCS7B01G164400 chr5B 86.275 153 14 7 1015 1160 479719544 479719392 6.650000e-35 159.0
27 TraesCS7B01G164400 chr5B 95.652 92 4 0 3802 3893 429030608 429030699 1.440000e-31 148.0
28 TraesCS7B01G164400 chr5B 93.000 100 6 1 3800 3899 677876065 677875967 1.860000e-30 145.0
29 TraesCS7B01G164400 chr5B 80.000 190 16 13 1 170 490547754 490547567 3.140000e-23 121.0
30 TraesCS7B01G164400 chr3B 99.417 857 5 0 2914 3770 289594033 289594889 0.000000e+00 1555.0
31 TraesCS7B01G164400 chr3B 77.044 318 31 20 2 277 513688628 513688945 1.860000e-30 145.0
32 TraesCS7B01G164400 chr3B 90.179 112 6 4 3802 3913 334313152 334313046 2.410000e-29 141.0
33 TraesCS7B01G164400 chr4B 96.634 921 9 2 2850 3770 180993017 180992119 0.000000e+00 1509.0
34 TraesCS7B01G164400 chr4B 86.190 210 25 3 164 370 648549957 648549749 2.320000e-54 224.0
35 TraesCS7B01G164400 chr5D 91.135 925 72 8 2850 3768 160067201 160068121 0.000000e+00 1245.0
36 TraesCS7B01G164400 chr5D 88.950 914 64 22 2850 3748 45631311 45632202 0.000000e+00 1094.0
37 TraesCS7B01G164400 chr5D 89.600 125 11 2 1038 1160 399332297 399332173 2.390000e-34 158.0
38 TraesCS7B01G164400 chr5D 75.676 407 50 28 3 374 482593208 482593600 2.390000e-34 158.0
39 TraesCS7B01G164400 chr5D 78.537 205 22 11 1 183 500685136 500685340 1.460000e-21 115.0
40 TraesCS7B01G164400 chr5A 87.284 928 72 23 2850 3764 9826278 9827172 0.000000e+00 1018.0
41 TraesCS7B01G164400 chr5A 86.407 949 73 24 2836 3770 708172017 708172923 0.000000e+00 987.0
42 TraesCS7B01G164400 chr5A 91.146 384 32 2 3062 3443 260334157 260333774 2.650000e-143 520.0
43 TraesCS7B01G164400 chr5A 88.000 125 13 2 1038 1160 504959878 504959754 5.180000e-31 147.0
44 TraesCS7B01G164400 chr5A 79.412 170 26 6 4 170 602353142 602353305 1.890000e-20 111.0
45 TraesCS7B01G164400 chr2A 86.915 940 73 23 2849 3774 716711111 716710208 0.000000e+00 1009.0
46 TraesCS7B01G164400 chr2A 88.716 257 26 1 119 372 33348223 33347967 1.730000e-80 311.0
47 TraesCS7B01G164400 chr2A 82.160 213 34 3 134 343 749853128 749853339 5.100000e-41 180.0
48 TraesCS7B01G164400 chr6A 87.986 874 74 16 2903 3768 557927428 557928278 0.000000e+00 1003.0
49 TraesCS7B01G164400 chr6A 85.427 199 25 2 162 360 195135944 195136138 3.030000e-48 204.0
50 TraesCS7B01G164400 chr6D 82.025 395 44 13 1 372 178136547 178136157 1.730000e-80 311.0
51 TraesCS7B01G164400 chr1D 85.356 239 31 2 134 369 256080235 256080472 1.780000e-60 244.0
52 TraesCS7B01G164400 chr2B 83.099 213 32 3 134 343 756154092 756154303 2.360000e-44 191.0
53 TraesCS7B01G164400 chr2B 78.333 300 39 13 1 277 756154006 756154302 3.070000e-38 171.0
54 TraesCS7B01G164400 chr2D 80.591 237 23 11 1 215 139739778 139739543 1.850000e-35 161.0
55 TraesCS7B01G164400 chr2D 74.938 403 58 26 1 371 247847746 247848137 1.860000e-30 145.0
56 TraesCS7B01G164400 chrUn 96.739 92 3 0 3799 3890 163394523 163394432 3.090000e-33 154.0
57 TraesCS7B01G164400 chrUn 96.739 92 3 0 3799 3890 325472535 325472444 3.090000e-33 154.0
58 TraesCS7B01G164400 chrUn 96.739 92 3 0 3799 3890 384522785 384522694 3.090000e-33 154.0
59 TraesCS7B01G164400 chrUn 97.753 89 2 0 3799 3887 386040246 386040334 3.090000e-33 154.0
60 TraesCS7B01G164400 chr1B 97.701 87 2 0 3802 3888 312230086 312230172 4.000000e-32 150.0
61 TraesCS7B01G164400 chr1B 78.613 173 17 9 1 153 446955368 446955196 5.290000e-16 97.1
62 TraesCS7B01G164400 chr4D 87.273 55 4 3 441 492 15871112 15871166 6.940000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G164400 chr7B 226900281 226906688 6407 True 11834.000 11834 100.000000 1 6408 1 chr7B.!!$R1 6407
1 TraesCS7B01G164400 chr7B 226997095 226997647 552 True 527.000 527 84.157000 377 951 1 chr7B.!!$R2 574
2 TraesCS7B01G164400 chr7A 238581032 238581961 929 False 1679.000 1679 99.248000 2850 3780 1 chr7A.!!$F1 930
3 TraesCS7B01G164400 chr7A 271373799 271380414 6615 False 901.425 3059 91.577125 384 6408 8 chr7A.!!$F2 6024
4 TraesCS7B01G164400 chr7D 64550918 64551837 919 False 1315.000 1315 92.633000 2849 3761 1 chr7D.!!$F1 912
5 TraesCS7B01G164400 chr7D 249788552 249793544 4992 True 934.300 2907 90.125571 381 6408 7 chr7D.!!$R1 6027
6 TraesCS7B01G164400 chr5B 576871743 576872656 913 False 1574.000 1574 97.614000 2849 3770 1 chr5B.!!$F2 921
7 TraesCS7B01G164400 chr3B 289594033 289594889 856 False 1555.000 1555 99.417000 2914 3770 1 chr3B.!!$F1 856
8 TraesCS7B01G164400 chr4B 180992119 180993017 898 True 1509.000 1509 96.634000 2850 3770 1 chr4B.!!$R1 920
9 TraesCS7B01G164400 chr5D 160067201 160068121 920 False 1245.000 1245 91.135000 2850 3768 1 chr5D.!!$F2 918
10 TraesCS7B01G164400 chr5D 45631311 45632202 891 False 1094.000 1094 88.950000 2850 3748 1 chr5D.!!$F1 898
11 TraesCS7B01G164400 chr5A 9826278 9827172 894 False 1018.000 1018 87.284000 2850 3764 1 chr5A.!!$F1 914
12 TraesCS7B01G164400 chr5A 708172017 708172923 906 False 987.000 987 86.407000 2836 3770 1 chr5A.!!$F3 934
13 TraesCS7B01G164400 chr2A 716710208 716711111 903 True 1009.000 1009 86.915000 2849 3774 1 chr2A.!!$R2 925
14 TraesCS7B01G164400 chr6A 557927428 557928278 850 False 1003.000 1003 87.986000 2903 3768 1 chr6A.!!$F2 865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
838 2340 0.045162 TCCGATAACCCCCTTCCCTT 59.955 55.000 0.00 0.0 0.00 3.95 F
1512 3064 0.039437 TCGACACTCGACAGGAAAGC 60.039 55.000 0.00 0.0 44.82 3.51 F
1648 3200 0.179156 CAAATCGTGCCTGCCATGAC 60.179 55.000 0.00 0.0 42.01 3.06 F
1785 3338 0.942962 CAAAAATGCAAGCGCCCAAA 59.057 45.000 2.29 0.0 37.32 3.28 F
1795 3348 1.065273 GCGCCCAAATCTCAGCATG 59.935 57.895 0.00 0.0 37.54 4.06 F
3815 5442 1.140452 GGAAATTACTCCCTCCGTCCC 59.860 57.143 0.00 0.0 0.00 4.46 F
3822 5449 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.0 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2768 4362 0.749649 GATCAGAGGCATGGACGTCT 59.250 55.000 16.46 0.0 35.24 4.18 R
2834 4428 2.348591 GCAGCGTTGCGGAAATAGATAC 60.349 50.000 8.94 0.0 41.13 2.24 R
3804 5431 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.0 0.00 4.20 R
3869 5496 0.042131 TTGTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.0 0.00 4.00 R
3870 5497 0.178926 TTTGTACTCCCTCCGTCCCA 60.179 55.000 0.00 0.0 0.00 4.37 R
4752 6381 1.144913 TGGTAAAGCTCAGCAAACCCT 59.855 47.619 11.41 0.0 0.00 4.34 R
5942 7685 1.220529 TCGCACTCTGCAAACTCTTG 58.779 50.000 0.00 0.0 45.36 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.744719 CTCCTCGCCGAACGGACA 61.745 66.667 17.63 1.11 43.89 4.02
23 24 3.966026 CTCCTCGCCGAACGGACAC 62.966 68.421 17.63 0.00 43.89 3.67
24 25 4.351938 CCTCGCCGAACGGACACA 62.352 66.667 17.63 0.00 43.89 3.72
25 26 3.103911 CTCGCCGAACGGACACAC 61.104 66.667 17.63 0.00 43.89 3.82
26 27 4.986587 TCGCCGAACGGACACACG 62.987 66.667 17.63 10.22 43.89 4.49
27 28 4.986587 CGCCGAACGGACACACGA 62.987 66.667 17.63 0.00 38.44 4.35
28 29 3.400590 GCCGAACGGACACACGAC 61.401 66.667 17.63 0.00 37.50 4.34
29 30 3.095278 CCGAACGGACACACGACG 61.095 66.667 7.53 0.00 37.50 5.12
30 31 2.352686 CGAACGGACACACGACGT 60.353 61.111 0.00 0.00 43.43 4.34
32 33 4.002037 AACGGACACACGACGTTC 57.998 55.556 0.00 0.00 46.50 3.95
33 34 1.940758 AACGGACACACGACGTTCG 60.941 57.895 0.00 0.00 46.50 3.95
34 35 3.749373 CGGACACACGACGTTCGC 61.749 66.667 0.00 0.00 45.12 4.70
35 36 3.400590 GGACACACGACGTTCGCC 61.401 66.667 0.00 0.00 45.12 5.54
36 37 3.749373 GACACACGACGTTCGCCG 61.749 66.667 0.00 0.00 45.12 6.46
38 39 4.986587 CACACGACGTTCGCCGGA 62.987 66.667 5.05 0.00 45.12 5.14
39 40 4.268939 ACACGACGTTCGCCGGAA 62.269 61.111 5.05 0.00 45.12 4.30
40 41 3.759828 CACGACGTTCGCCGGAAC 61.760 66.667 5.05 0.00 45.12 3.62
56 57 1.529865 GGAACGTGTAGGTGAAACTGC 59.470 52.381 0.00 0.00 36.74 4.40
57 58 2.480845 GAACGTGTAGGTGAAACTGCT 58.519 47.619 0.00 0.00 36.74 4.24
58 59 2.150397 ACGTGTAGGTGAAACTGCTC 57.850 50.000 0.00 0.00 36.74 4.26
59 60 1.687123 ACGTGTAGGTGAAACTGCTCT 59.313 47.619 0.00 0.00 36.74 4.09
60 61 2.102588 ACGTGTAGGTGAAACTGCTCTT 59.897 45.455 0.00 0.00 36.74 2.85
61 62 2.731976 CGTGTAGGTGAAACTGCTCTTC 59.268 50.000 0.00 0.00 36.74 2.87
62 63 2.731976 GTGTAGGTGAAACTGCTCTTCG 59.268 50.000 0.00 0.00 36.74 3.79
63 64 1.727335 GTAGGTGAAACTGCTCTTCGC 59.273 52.381 0.00 0.00 36.74 4.70
64 65 1.869690 GGTGAAACTGCTCTTCGCC 59.130 57.895 8.99 8.99 44.00 5.54
65 66 1.578206 GGTGAAACTGCTCTTCGCCC 61.578 60.000 12.05 1.93 44.36 6.13
66 67 0.884704 GTGAAACTGCTCTTCGCCCA 60.885 55.000 0.00 0.00 38.05 5.36
67 68 0.884704 TGAAACTGCTCTTCGCCCAC 60.885 55.000 0.00 0.00 38.05 4.61
68 69 0.884704 GAAACTGCTCTTCGCCCACA 60.885 55.000 0.00 0.00 38.05 4.17
69 70 1.166531 AAACTGCTCTTCGCCCACAC 61.167 55.000 0.00 0.00 38.05 3.82
70 71 3.114616 CTGCTCTTCGCCCACACG 61.115 66.667 0.00 0.00 38.05 4.49
71 72 3.573772 CTGCTCTTCGCCCACACGA 62.574 63.158 0.00 0.00 41.04 4.35
72 73 3.112709 GCTCTTCGCCCACACGAC 61.113 66.667 0.00 0.00 42.78 4.34
73 74 2.805353 CTCTTCGCCCACACGACG 60.805 66.667 0.00 0.00 42.78 5.12
82 83 2.127003 CACACGACGCTCGCACTA 60.127 61.111 0.00 0.00 45.12 2.74
83 84 1.514228 CACACGACGCTCGCACTAT 60.514 57.895 0.00 0.00 45.12 2.12
84 85 1.514228 ACACGACGCTCGCACTATG 60.514 57.895 0.00 1.78 45.12 2.23
85 86 1.226295 CACGACGCTCGCACTATGA 60.226 57.895 0.00 0.00 45.12 2.15
86 87 0.592500 CACGACGCTCGCACTATGAT 60.593 55.000 0.00 0.00 45.12 2.45
87 88 0.942252 ACGACGCTCGCACTATGATA 59.058 50.000 0.00 0.00 45.12 2.15
88 89 1.069838 ACGACGCTCGCACTATGATAG 60.070 52.381 0.00 0.00 45.12 2.08
89 90 1.194772 CGACGCTCGCACTATGATAGA 59.805 52.381 6.45 0.00 31.14 1.98
90 91 2.159639 CGACGCTCGCACTATGATAGAT 60.160 50.000 6.45 0.00 31.14 1.98
91 92 3.062234 CGACGCTCGCACTATGATAGATA 59.938 47.826 6.45 0.00 31.14 1.98
92 93 4.583426 GACGCTCGCACTATGATAGATAG 58.417 47.826 6.45 0.00 0.00 2.08
93 94 4.254492 ACGCTCGCACTATGATAGATAGA 58.746 43.478 6.45 1.58 0.00 1.98
94 95 4.878971 ACGCTCGCACTATGATAGATAGAT 59.121 41.667 6.45 0.00 0.00 1.98
95 96 5.204101 CGCTCGCACTATGATAGATAGATG 58.796 45.833 6.45 0.00 0.00 2.90
96 97 5.518812 GCTCGCACTATGATAGATAGATGG 58.481 45.833 6.45 0.00 0.00 3.51
97 98 5.506686 TCGCACTATGATAGATAGATGGC 57.493 43.478 6.45 0.00 0.00 4.40
98 99 4.949856 TCGCACTATGATAGATAGATGGCA 59.050 41.667 6.45 0.00 0.00 4.92
99 100 5.418840 TCGCACTATGATAGATAGATGGCAA 59.581 40.000 6.45 0.00 0.00 4.52
100 101 5.518128 CGCACTATGATAGATAGATGGCAAC 59.482 44.000 6.45 0.00 0.00 4.17
101 102 6.626844 CGCACTATGATAGATAGATGGCAACT 60.627 42.308 6.45 1.95 37.61 3.16
102 103 7.415653 CGCACTATGATAGATAGATGGCAACTA 60.416 40.741 6.45 6.96 37.61 2.24
103 104 7.920151 GCACTATGATAGATAGATGGCAACTAG 59.080 40.741 6.45 0.00 37.61 2.57
104 105 8.965819 CACTATGATAGATAGATGGCAACTAGT 58.034 37.037 6.45 3.18 37.61 2.57
105 106 9.540538 ACTATGATAGATAGATGGCAACTAGTT 57.459 33.333 6.45 1.12 37.61 2.24
112 113 8.023021 AGATAGATGGCAACTAGTTAATCACA 57.977 34.615 19.43 11.26 37.61 3.58
113 114 7.928706 AGATAGATGGCAACTAGTTAATCACAC 59.071 37.037 19.43 12.75 37.61 3.82
114 115 5.804639 AGATGGCAACTAGTTAATCACACA 58.195 37.500 19.43 8.96 37.61 3.72
115 116 6.418101 AGATGGCAACTAGTTAATCACACAT 58.582 36.000 19.43 12.05 37.61 3.21
116 117 5.878332 TGGCAACTAGTTAATCACACATG 57.122 39.130 8.04 0.00 37.61 3.21
117 118 5.555966 TGGCAACTAGTTAATCACACATGA 58.444 37.500 8.04 0.00 36.92 3.07
118 119 5.411361 TGGCAACTAGTTAATCACACATGAC 59.589 40.000 8.04 0.00 35.61 3.06
119 120 5.411361 GGCAACTAGTTAATCACACATGACA 59.589 40.000 8.04 0.00 37.79 3.58
120 121 6.072728 GGCAACTAGTTAATCACACATGACAA 60.073 38.462 8.04 0.00 37.79 3.18
121 122 7.362056 GGCAACTAGTTAATCACACATGACAAT 60.362 37.037 8.04 0.00 37.79 2.71
122 123 8.023128 GCAACTAGTTAATCACACATGACAATT 58.977 33.333 8.04 0.00 37.79 2.32
132 133 7.609760 TCACACATGACAATTATAGTTGACC 57.390 36.000 14.28 6.59 33.37 4.02
133 134 7.164803 TCACACATGACAATTATAGTTGACCA 58.835 34.615 14.28 11.21 33.37 4.02
134 135 7.828717 TCACACATGACAATTATAGTTGACCAT 59.171 33.333 14.28 12.67 33.37 3.55
135 136 9.108284 CACACATGACAATTATAGTTGACCATA 57.892 33.333 14.28 0.00 33.37 2.74
136 137 9.109393 ACACATGACAATTATAGTTGACCATAC 57.891 33.333 14.28 0.94 33.37 2.39
137 138 9.108284 CACATGACAATTATAGTTGACCATACA 57.892 33.333 14.28 5.51 33.37 2.29
138 139 9.851686 ACATGACAATTATAGTTGACCATACAT 57.148 29.630 14.28 7.12 33.37 2.29
140 141 8.675705 TGACAATTATAGTTGACCATACATGG 57.324 34.615 14.28 6.70 41.66 3.66
141 142 7.228507 TGACAATTATAGTTGACCATACATGGC 59.771 37.037 14.28 2.45 40.66 4.40
142 143 7.059788 ACAATTATAGTTGACCATACATGGCA 58.940 34.615 14.28 4.94 40.66 4.92
143 144 7.559533 ACAATTATAGTTGACCATACATGGCAA 59.440 33.333 14.28 10.24 40.66 4.52
154 155 6.638096 CCATACATGGCAACTATGATTTGA 57.362 37.500 13.62 0.00 41.75 2.69
155 156 6.441274 CCATACATGGCAACTATGATTTGAC 58.559 40.000 13.62 0.00 41.75 3.18
156 157 4.989279 ACATGGCAACTATGATTTGACC 57.011 40.909 0.00 0.00 30.07 4.02
157 158 4.343231 ACATGGCAACTATGATTTGACCA 58.657 39.130 0.00 0.00 35.79 4.02
158 159 4.158394 ACATGGCAACTATGATTTGACCAC 59.842 41.667 0.00 0.00 34.85 4.16
159 160 3.760738 TGGCAACTATGATTTGACCACA 58.239 40.909 0.00 0.00 30.07 4.17
160 161 3.505680 TGGCAACTATGATTTGACCACAC 59.494 43.478 0.00 0.00 30.07 3.82
161 162 3.426159 GGCAACTATGATTTGACCACACG 60.426 47.826 0.00 0.00 0.00 4.49
162 163 3.188460 GCAACTATGATTTGACCACACGT 59.812 43.478 0.00 0.00 0.00 4.49
163 164 4.711721 CAACTATGATTTGACCACACGTG 58.288 43.478 15.48 15.48 0.00 4.49
172 173 4.771127 CCACACGTGGCAACTAGT 57.229 55.556 21.57 0.00 44.73 2.57
173 174 3.000815 CCACACGTGGCAACTAGTT 57.999 52.632 21.57 1.12 44.73 2.24
174 175 2.157834 CCACACGTGGCAACTAGTTA 57.842 50.000 21.57 0.00 44.73 2.24
175 176 2.485903 CCACACGTGGCAACTAGTTAA 58.514 47.619 21.57 0.00 44.73 2.01
176 177 3.071479 CCACACGTGGCAACTAGTTAAT 58.929 45.455 21.57 0.00 44.73 1.40
177 178 3.124636 CCACACGTGGCAACTAGTTAATC 59.875 47.826 21.57 1.69 44.73 1.75
178 179 3.743911 CACACGTGGCAACTAGTTAATCA 59.256 43.478 21.57 4.35 37.61 2.57
179 180 3.744426 ACACGTGGCAACTAGTTAATCAC 59.256 43.478 21.57 14.54 37.61 3.06
180 181 3.743911 CACGTGGCAACTAGTTAATCACA 59.256 43.478 23.05 11.67 37.61 3.58
181 182 3.744426 ACGTGGCAACTAGTTAATCACAC 59.256 43.478 23.05 18.29 37.61 3.82
182 183 3.743911 CGTGGCAACTAGTTAATCACACA 59.256 43.478 23.05 9.41 37.61 3.72
183 184 4.377022 CGTGGCAACTAGTTAATCACACAC 60.377 45.833 23.05 16.21 37.61 3.82
184 185 4.069304 TGGCAACTAGTTAATCACACACC 58.931 43.478 8.04 0.24 37.61 4.16
185 186 4.069304 GGCAACTAGTTAATCACACACCA 58.931 43.478 8.04 0.00 0.00 4.17
186 187 4.083484 GGCAACTAGTTAATCACACACCAC 60.083 45.833 8.04 0.00 0.00 4.16
187 188 4.513692 GCAACTAGTTAATCACACACCACA 59.486 41.667 8.04 0.00 0.00 4.17
188 189 5.008217 GCAACTAGTTAATCACACACCACAA 59.992 40.000 8.04 0.00 0.00 3.33
189 190 6.293955 GCAACTAGTTAATCACACACCACAAT 60.294 38.462 8.04 0.00 0.00 2.71
190 191 7.648142 CAACTAGTTAATCACACACCACAATT 58.352 34.615 8.04 0.00 0.00 2.32
191 192 8.779303 CAACTAGTTAATCACACACCACAATTA 58.221 33.333 8.04 0.00 0.00 1.40
192 193 9.515226 AACTAGTTAATCACACACCACAATTAT 57.485 29.630 6.26 0.00 0.00 1.28
196 197 9.515226 AGTTAATCACACACCACAATTATAGTT 57.485 29.630 0.00 0.00 0.00 2.24
197 198 9.554724 GTTAATCACACACCACAATTATAGTTG 57.445 33.333 6.44 6.44 35.25 3.16
198 199 7.994425 AATCACACACCACAATTATAGTTGA 57.006 32.000 14.28 0.00 33.37 3.18
199 200 6.795098 TCACACACCACAATTATAGTTGAC 57.205 37.500 14.28 0.00 33.37 3.18
200 201 5.703592 TCACACACCACAATTATAGTTGACC 59.296 40.000 14.28 0.00 33.37 4.02
201 202 5.471797 CACACACCACAATTATAGTTGACCA 59.528 40.000 14.28 0.00 33.37 4.02
202 203 6.150976 CACACACCACAATTATAGTTGACCAT 59.849 38.462 14.28 0.00 33.37 3.55
203 204 7.335673 CACACACCACAATTATAGTTGACCATA 59.664 37.037 14.28 0.00 33.37 2.74
204 205 7.335924 ACACACCACAATTATAGTTGACCATAC 59.664 37.037 14.28 0.00 33.37 2.39
205 206 7.335673 CACACCACAATTATAGTTGACCATACA 59.664 37.037 14.28 0.00 33.37 2.29
206 207 8.052748 ACACCACAATTATAGTTGACCATACAT 58.947 33.333 14.28 0.00 33.37 2.29
207 208 8.344831 CACCACAATTATAGTTGACCATACATG 58.655 37.037 14.28 0.00 33.37 3.21
208 209 8.271458 ACCACAATTATAGTTGACCATACATGA 58.729 33.333 14.28 0.00 33.37 3.07
209 210 8.559536 CCACAATTATAGTTGACCATACATGAC 58.440 37.037 14.28 0.00 33.37 3.06
210 211 9.108284 CACAATTATAGTTGACCATACATGACA 57.892 33.333 14.28 0.00 33.37 3.58
211 212 9.679661 ACAATTATAGTTGACCATACATGACAA 57.320 29.630 14.28 0.00 33.37 3.18
212 213 9.935682 CAATTATAGTTGACCATACATGACAAC 57.064 33.333 0.00 16.70 40.92 3.32
213 214 9.905713 AATTATAGTTGACCATACATGACAACT 57.094 29.630 23.76 23.76 46.03 3.16
217 218 6.115446 AGTTGACCATACATGACAACTATGG 58.885 40.000 21.39 14.67 44.47 2.74
219 220 6.061022 TGACCATACATGACAACTATGGTT 57.939 37.500 20.18 9.07 46.74 3.67
220 221 6.480763 TGACCATACATGACAACTATGGTTT 58.519 36.000 20.18 4.86 46.74 3.27
221 222 6.374053 TGACCATACATGACAACTATGGTTTG 59.626 38.462 20.18 0.00 46.74 2.93
222 223 6.480763 ACCATACATGACAACTATGGTTTGA 58.519 36.000 15.71 0.00 45.24 2.69
223 224 6.374333 ACCATACATGACAACTATGGTTTGAC 59.626 38.462 15.71 0.00 45.24 3.18
224 225 6.183360 CCATACATGACAACTATGGTTTGACC 60.183 42.308 0.00 0.00 39.22 4.02
233 234 3.073086 TGGTTTGACCACACGTGAG 57.927 52.632 25.01 15.20 44.79 3.51
234 235 0.537653 TGGTTTGACCACACGTGAGA 59.462 50.000 25.01 0.00 44.79 3.27
235 236 1.066071 TGGTTTGACCACACGTGAGAA 60.066 47.619 25.01 1.65 44.79 2.87
236 237 1.329599 GGTTTGACCACACGTGAGAAC 59.670 52.381 25.01 13.93 38.42 3.01
237 238 2.277084 GTTTGACCACACGTGAGAACT 58.723 47.619 25.01 0.00 0.00 3.01
238 239 2.218953 TTGACCACACGTGAGAACTC 57.781 50.000 25.01 10.05 0.00 3.01
239 240 0.387929 TGACCACACGTGAGAACTCC 59.612 55.000 25.01 4.94 0.00 3.85
240 241 0.387929 GACCACACGTGAGAACTCCA 59.612 55.000 25.01 0.00 0.00 3.86
241 242 0.828022 ACCACACGTGAGAACTCCAA 59.172 50.000 25.01 0.00 0.00 3.53
242 243 1.416401 ACCACACGTGAGAACTCCAAT 59.584 47.619 25.01 0.00 0.00 3.16
243 244 2.158813 ACCACACGTGAGAACTCCAATT 60.159 45.455 25.01 0.00 0.00 2.32
244 245 3.070446 ACCACACGTGAGAACTCCAATTA 59.930 43.478 25.01 0.00 0.00 1.40
245 246 3.679980 CCACACGTGAGAACTCCAATTAG 59.320 47.826 25.01 0.00 0.00 1.73
246 247 4.307432 CACACGTGAGAACTCCAATTAGT 58.693 43.478 25.01 0.00 0.00 2.24
247 248 4.750098 CACACGTGAGAACTCCAATTAGTT 59.250 41.667 25.01 0.00 42.36 2.24
248 249 5.924254 CACACGTGAGAACTCCAATTAGTTA 59.076 40.000 25.01 0.00 39.78 2.24
249 250 5.924825 ACACGTGAGAACTCCAATTAGTTAC 59.075 40.000 25.01 0.00 39.78 2.50
250 251 5.924254 CACGTGAGAACTCCAATTAGTTACA 59.076 40.000 10.90 0.00 39.78 2.41
251 252 5.924825 ACGTGAGAACTCCAATTAGTTACAC 59.075 40.000 14.40 14.40 39.78 2.90
252 253 5.924254 CGTGAGAACTCCAATTAGTTACACA 59.076 40.000 19.38 9.14 41.56 3.72
253 254 6.590292 CGTGAGAACTCCAATTAGTTACACAT 59.410 38.462 19.38 0.45 41.56 3.21
254 255 7.411912 CGTGAGAACTCCAATTAGTTACACATG 60.412 40.741 19.38 0.00 41.56 3.21
255 256 6.878923 TGAGAACTCCAATTAGTTACACATGG 59.121 38.462 0.00 0.00 39.78 3.66
256 257 5.648092 AGAACTCCAATTAGTTACACATGGC 59.352 40.000 0.00 0.00 39.78 4.40
257 258 4.917385 ACTCCAATTAGTTACACATGGCA 58.083 39.130 0.00 0.00 0.00 4.92
258 259 5.321102 ACTCCAATTAGTTACACATGGCAA 58.679 37.500 0.00 0.00 0.00 4.52
259 260 5.183140 ACTCCAATTAGTTACACATGGCAAC 59.817 40.000 0.00 0.00 0.00 4.17
260 261 5.321102 TCCAATTAGTTACACATGGCAACT 58.679 37.500 11.88 11.88 36.51 3.16
261 262 6.477253 TCCAATTAGTTACACATGGCAACTA 58.523 36.000 10.35 10.35 34.48 2.24
262 263 7.116075 TCCAATTAGTTACACATGGCAACTAT 58.884 34.615 13.51 2.23 35.35 2.12
263 264 8.268605 TCCAATTAGTTACACATGGCAACTATA 58.731 33.333 13.51 7.94 35.35 1.31
264 265 9.066892 CCAATTAGTTACACATGGCAACTATAT 57.933 33.333 13.51 9.22 35.35 0.86
295 296 9.936759 TGATACATAACAACTAAAGATCACACA 57.063 29.630 0.00 0.00 0.00 3.72
298 299 8.044060 ACATAACAACTAAAGATCACACATGG 57.956 34.615 0.00 0.00 0.00 3.66
299 300 5.376854 AACAACTAAAGATCACACATGGC 57.623 39.130 0.00 0.00 0.00 4.40
300 301 4.397420 ACAACTAAAGATCACACATGGCA 58.603 39.130 0.00 0.00 0.00 4.92
301 302 4.826733 ACAACTAAAGATCACACATGGCAA 59.173 37.500 0.00 0.00 0.00 4.52
302 303 5.156355 CAACTAAAGATCACACATGGCAAC 58.844 41.667 0.00 0.00 0.00 4.17
303 304 4.655963 ACTAAAGATCACACATGGCAACT 58.344 39.130 0.00 0.00 37.61 3.16
304 305 5.072741 ACTAAAGATCACACATGGCAACTT 58.927 37.500 0.00 0.00 37.61 2.66
305 306 4.942761 AAAGATCACACATGGCAACTTT 57.057 36.364 0.00 0.00 37.61 2.66
306 307 6.714810 ACTAAAGATCACACATGGCAACTTTA 59.285 34.615 0.00 0.00 37.61 1.85
307 308 5.633830 AAGATCACACATGGCAACTTTAG 57.366 39.130 0.00 0.00 37.61 1.85
308 309 4.655963 AGATCACACATGGCAACTTTAGT 58.344 39.130 0.00 0.00 37.61 2.24
309 310 5.804639 AGATCACACATGGCAACTTTAGTA 58.195 37.500 0.00 0.00 37.61 1.82
310 311 6.237901 AGATCACACATGGCAACTTTAGTAA 58.762 36.000 0.00 0.00 37.61 2.24
311 312 6.886459 AGATCACACATGGCAACTTTAGTAAT 59.114 34.615 0.00 0.00 37.61 1.89
312 313 6.892658 TCACACATGGCAACTTTAGTAATT 57.107 33.333 0.00 0.00 37.61 1.40
313 314 7.987750 TCACACATGGCAACTTTAGTAATTA 57.012 32.000 0.00 0.00 37.61 1.40
314 315 8.039603 TCACACATGGCAACTTTAGTAATTAG 57.960 34.615 0.00 0.00 37.61 1.73
315 316 7.880713 TCACACATGGCAACTTTAGTAATTAGA 59.119 33.333 0.00 0.00 37.61 2.10
316 317 7.962918 CACACATGGCAACTTTAGTAATTAGAC 59.037 37.037 0.00 0.00 37.61 2.59
317 318 7.663905 ACACATGGCAACTTTAGTAATTAGACA 59.336 33.333 0.00 0.00 37.61 3.41
318 319 8.677300 CACATGGCAACTTTAGTAATTAGACAT 58.323 33.333 0.00 0.00 37.61 3.06
319 320 8.677300 ACATGGCAACTTTAGTAATTAGACATG 58.323 33.333 14.46 14.46 36.48 3.21
320 321 7.624360 TGGCAACTTTAGTAATTAGACATGG 57.376 36.000 0.00 0.00 37.61 3.66
321 322 6.094881 TGGCAACTTTAGTAATTAGACATGGC 59.905 38.462 0.00 0.00 37.61 4.40
322 323 6.094881 GGCAACTTTAGTAATTAGACATGGCA 59.905 38.462 0.00 0.00 0.00 4.92
323 324 7.362574 GGCAACTTTAGTAATTAGACATGGCAA 60.363 37.037 0.00 0.00 0.00 4.52
324 325 7.484959 GCAACTTTAGTAATTAGACATGGCAAC 59.515 37.037 0.00 0.00 0.00 4.17
325 326 8.730680 CAACTTTAGTAATTAGACATGGCAACT 58.269 33.333 0.00 0.00 37.61 3.16
326 327 9.953565 AACTTTAGTAATTAGACATGGCAACTA 57.046 29.630 0.00 0.00 37.61 2.24
339 340 9.326413 AGACATGGCAACTATAGTTAATTACAC 57.674 33.333 17.62 8.17 36.32 2.90
340 341 9.104965 GACATGGCAACTATAGTTAATTACACA 57.895 33.333 17.62 9.36 36.32 3.72
341 342 9.627123 ACATGGCAACTATAGTTAATTACACAT 57.373 29.630 17.62 10.92 36.32 3.21
342 343 9.882996 CATGGCAACTATAGTTAATTACACATG 57.117 33.333 17.62 16.97 36.32 3.21
343 344 8.445275 TGGCAACTATAGTTAATTACACATGG 57.555 34.615 17.62 2.75 36.32 3.66
344 345 8.050325 TGGCAACTATAGTTAATTACACATGGT 58.950 33.333 17.62 0.00 36.32 3.55
345 346 9.550406 GGCAACTATAGTTAATTACACATGGTA 57.450 33.333 17.62 0.00 36.32 3.25
367 368 8.806634 TGGTAACTAAAGTTTATTATACACGCG 58.193 33.333 3.53 3.53 39.31 6.01
368 369 8.807581 GGTAACTAAAGTTTATTATACACGCGT 58.192 33.333 5.58 5.58 39.31 6.01
371 372 7.603515 ACTAAAGTTTATTATACACGCGTTCG 58.396 34.615 10.22 0.71 42.43 3.95
372 373 6.630676 AAAGTTTATTATACACGCGTTCGA 57.369 33.333 10.22 0.00 39.41 3.71
373 374 5.861491 AGTTTATTATACACGCGTTCGAG 57.139 39.130 10.22 0.00 39.41 4.04
374 375 5.572211 AGTTTATTATACACGCGTTCGAGA 58.428 37.500 10.22 0.00 39.41 4.04
375 376 5.453587 AGTTTATTATACACGCGTTCGAGAC 59.546 40.000 10.22 0.00 39.41 3.36
438 439 7.698836 AAAAGGATAATCAAAACATATGCGC 57.301 32.000 0.00 0.00 0.00 6.09
585 589 2.876079 GCTCACGGACTCAGGGAAAAAT 60.876 50.000 0.00 0.00 0.00 1.82
590 594 5.659525 TCACGGACTCAGGGAAAAATATAGA 59.340 40.000 0.00 0.00 0.00 1.98
597 601 8.794335 ACTCAGGGAAAAATATAGAGACAAAC 57.206 34.615 0.00 0.00 0.00 2.93
612 616 6.766429 AGAGACAAACGTTTTAGGGTAAGAT 58.234 36.000 11.66 0.00 0.00 2.40
613 617 7.899973 AGAGACAAACGTTTTAGGGTAAGATA 58.100 34.615 11.66 0.00 0.00 1.98
614 618 8.370182 AGAGACAAACGTTTTAGGGTAAGATAA 58.630 33.333 11.66 0.00 0.00 1.75
615 619 8.543862 AGACAAACGTTTTAGGGTAAGATAAG 57.456 34.615 11.66 0.00 0.00 1.73
616 620 8.370182 AGACAAACGTTTTAGGGTAAGATAAGA 58.630 33.333 11.66 0.00 0.00 2.10
626 630 4.103311 AGGGTAAGATAAGAGTTGGATGGC 59.897 45.833 0.00 0.00 0.00 4.40
645 649 0.994263 CCGGTTTTCGTATCACGGTC 59.006 55.000 0.00 0.00 42.81 4.79
646 650 0.994263 CGGTTTTCGTATCACGGTCC 59.006 55.000 0.00 0.00 42.81 4.46
701 705 2.380084 TTGGAGATGCACTAACCGTC 57.620 50.000 0.00 0.00 0.00 4.79
757 2239 1.818642 AAGCTAGCAGGAACAGCAAG 58.181 50.000 18.83 0.00 45.86 4.01
758 2240 0.979665 AGCTAGCAGGAACAGCAAGA 59.020 50.000 18.83 0.00 45.86 3.02
815 2317 1.142060 ACGTCCAACTCCATCACCAAA 59.858 47.619 0.00 0.00 0.00 3.28
836 2338 1.416480 CCTCCGATAACCCCCTTCCC 61.416 65.000 0.00 0.00 0.00 3.97
838 2340 0.045162 TCCGATAACCCCCTTCCCTT 59.955 55.000 0.00 0.00 0.00 3.95
839 2341 0.472898 CCGATAACCCCCTTCCCTTC 59.527 60.000 0.00 0.00 0.00 3.46
840 2342 0.472898 CGATAACCCCCTTCCCTTCC 59.527 60.000 0.00 0.00 0.00 3.46
841 2343 1.603634 GATAACCCCCTTCCCTTCCA 58.396 55.000 0.00 0.00 0.00 3.53
842 2344 2.144450 GATAACCCCCTTCCCTTCCAT 58.856 52.381 0.00 0.00 0.00 3.41
843 2345 2.995765 TAACCCCCTTCCCTTCCATA 57.004 50.000 0.00 0.00 0.00 2.74
844 2346 2.084121 AACCCCCTTCCCTTCCATAA 57.916 50.000 0.00 0.00 0.00 1.90
845 2347 1.608425 ACCCCCTTCCCTTCCATAAG 58.392 55.000 0.00 0.00 0.00 1.73
846 2348 1.203701 ACCCCCTTCCCTTCCATAAGT 60.204 52.381 0.00 0.00 0.00 2.24
850 2352 3.136626 CCCCTTCCCTTCCATAAGTAGTG 59.863 52.174 0.00 0.00 0.00 2.74
875 2378 0.400594 AGTACCAGCTCCAAACCCAC 59.599 55.000 0.00 0.00 0.00 4.61
876 2379 0.608308 GTACCAGCTCCAAACCCACC 60.608 60.000 0.00 0.00 0.00 4.61
877 2380 1.785353 TACCAGCTCCAAACCCACCC 61.785 60.000 0.00 0.00 0.00 4.61
878 2381 2.520458 CAGCTCCAAACCCACCCA 59.480 61.111 0.00 0.00 0.00 4.51
879 2382 1.903404 CAGCTCCAAACCCACCCAC 60.903 63.158 0.00 0.00 0.00 4.61
880 2383 2.983592 GCTCCAAACCCACCCACG 60.984 66.667 0.00 0.00 0.00 4.94
881 2384 2.983592 CTCCAAACCCACCCACGC 60.984 66.667 0.00 0.00 0.00 5.34
882 2385 3.491598 CTCCAAACCCACCCACGCT 62.492 63.158 0.00 0.00 0.00 5.07
883 2386 3.294493 CCAAACCCACCCACGCTG 61.294 66.667 0.00 0.00 0.00 5.18
884 2387 2.203280 CAAACCCACCCACGCTGA 60.203 61.111 0.00 0.00 0.00 4.26
885 2388 2.203294 AAACCCACCCACGCTGAC 60.203 61.111 0.00 0.00 0.00 3.51
968 2508 4.632458 GAGCCCGCGATCGACCTC 62.632 72.222 21.57 13.32 38.10 3.85
1104 2644 2.101380 GGACAGCTCGTCTCGCTC 59.899 66.667 13.59 0.00 44.70 5.03
1175 2715 4.421479 CGTCAACTCGCCGCCTCT 62.421 66.667 0.00 0.00 0.00 3.69
1186 2726 3.009115 CGCCTCTTTCCTCCCCCA 61.009 66.667 0.00 0.00 0.00 4.96
1236 2777 1.935300 GCCGACGAGTGTTTGATCAGT 60.935 52.381 0.00 0.00 0.00 3.41
1237 2778 2.670229 GCCGACGAGTGTTTGATCAGTA 60.670 50.000 0.00 0.00 0.00 2.74
1238 2779 2.915463 CCGACGAGTGTTTGATCAGTAC 59.085 50.000 0.00 0.00 0.00 2.73
1239 2780 3.366070 CCGACGAGTGTTTGATCAGTACT 60.366 47.826 0.00 7.92 0.00 2.73
1240 2781 4.142752 CCGACGAGTGTTTGATCAGTACTA 60.143 45.833 0.00 0.00 0.00 1.82
1261 2802 6.586344 ACTATACTCTGTCATCACCAATTGG 58.414 40.000 23.31 23.31 42.17 3.16
1264 2805 0.452987 CTGTCATCACCAATTGGGCG 59.547 55.000 27.89 18.21 42.05 6.13
1277 2818 5.420739 ACCAATTGGGCGTTGATTAATACTT 59.579 36.000 27.89 0.00 42.05 2.24
1287 2828 5.901884 CGTTGATTAATACTTTGTCATCGCC 59.098 40.000 0.00 0.00 0.00 5.54
1314 2855 7.977789 TTGTGCTTTGATTAATACTCTGTCA 57.022 32.000 0.00 0.00 0.00 3.58
1349 2890 1.211212 CCTGGATGACAAGAGGCATCA 59.789 52.381 12.86 0.00 42.00 3.07
1457 3009 4.653801 TCGGGAATCTAGATTGATTGGTCA 59.346 41.667 22.61 0.00 36.86 4.02
1512 3064 0.039437 TCGACACTCGACAGGAAAGC 60.039 55.000 0.00 0.00 44.82 3.51
1551 3103 6.059484 TCTCGATTAAATATTGGGGTTCCAC 58.941 40.000 0.00 0.00 43.94 4.02
1565 3117 1.137282 GTTCCACGGCTTTTTCCCAAA 59.863 47.619 0.00 0.00 0.00 3.28
1566 3118 0.747852 TCCACGGCTTTTTCCCAAAC 59.252 50.000 0.00 0.00 0.00 2.93
1600 3152 2.753966 AACATCTGATGCGGCGTGC 61.754 57.895 17.24 0.00 46.70 5.34
1648 3200 0.179156 CAAATCGTGCCTGCCATGAC 60.179 55.000 0.00 0.00 42.01 3.06
1687 3240 8.964476 TTCTTTATAAGCCGATTGAGATCTTT 57.036 30.769 0.00 0.00 0.00 2.52
1694 3247 3.686726 GCCGATTGAGATCTTTTGTGTCT 59.313 43.478 0.00 0.00 0.00 3.41
1716 3269 1.338107 TTGGACGATGTCACCTCAGT 58.662 50.000 0.00 0.00 33.68 3.41
1717 3270 1.338107 TGGACGATGTCACCTCAGTT 58.662 50.000 0.00 0.00 33.68 3.16
1718 3271 1.272490 TGGACGATGTCACCTCAGTTC 59.728 52.381 0.00 0.00 33.68 3.01
1719 3272 1.272490 GGACGATGTCACCTCAGTTCA 59.728 52.381 0.00 0.00 33.68 3.18
1720 3273 2.600731 GACGATGTCACCTCAGTTCAG 58.399 52.381 0.00 0.00 32.09 3.02
1721 3274 2.229062 GACGATGTCACCTCAGTTCAGA 59.771 50.000 0.00 0.00 32.09 3.27
1722 3275 2.029828 ACGATGTCACCTCAGTTCAGAC 60.030 50.000 0.00 0.00 0.00 3.51
1782 3335 0.943673 AAACAAAAATGCAAGCGCCC 59.056 45.000 2.29 0.00 37.32 6.13
1785 3338 0.942962 CAAAAATGCAAGCGCCCAAA 59.057 45.000 2.29 0.00 37.32 3.28
1795 3348 1.065273 GCGCCCAAATCTCAGCATG 59.935 57.895 0.00 0.00 37.54 4.06
2024 3609 6.887013 ACTGTGAGATGATCAGAAAGCTAAT 58.113 36.000 0.09 0.00 39.07 1.73
2043 3630 9.740710 AAGCTAATCCATTAAACTGTTAGAACT 57.259 29.630 0.00 0.00 0.00 3.01
2171 3764 4.635324 AGTTTGGTTTGCATTGTTTTCCTG 59.365 37.500 0.00 0.00 0.00 3.86
2370 3963 5.533903 GTGGCACAATCATATGAATCCTCTT 59.466 40.000 13.86 0.00 44.16 2.85
2372 3965 7.229306 GTGGCACAATCATATGAATCCTCTTAA 59.771 37.037 13.86 0.00 44.16 1.85
2373 3966 7.229306 TGGCACAATCATATGAATCCTCTTAAC 59.771 37.037 9.99 0.00 31.92 2.01
2503 4097 6.811253 ACACAAGCGGAAAATGTAATCTTA 57.189 33.333 0.00 0.00 0.00 2.10
2515 4109 9.700831 GAAAATGTAATCTTATATATGCCCCCT 57.299 33.333 0.00 0.00 0.00 4.79
2558 4152 3.987220 GCTTTTATGCGACACCATGTTTT 59.013 39.130 0.00 0.00 0.00 2.43
2744 4338 2.060980 TGTTGGGGTTTGTGTGGCC 61.061 57.895 0.00 0.00 0.00 5.36
2768 4362 7.820872 GCCGGCCTTATATTAGTAGTATTTTCA 59.179 37.037 18.11 0.00 0.00 2.69
2834 4428 9.212641 CTCATCAACCTATATTACAGTTCCATG 57.787 37.037 0.00 0.00 0.00 3.66
2846 4440 8.833231 ATTACAGTTCCATGTATCTATTTCCG 57.167 34.615 0.00 0.00 35.65 4.30
2847 4441 5.057149 ACAGTTCCATGTATCTATTTCCGC 58.943 41.667 0.00 0.00 0.00 5.54
3811 5438 5.542779 CTGATTAGGAAATTACTCCCTCCG 58.457 45.833 0.00 0.00 35.95 4.63
3812 5439 4.966805 TGATTAGGAAATTACTCCCTCCGT 59.033 41.667 0.00 0.00 35.95 4.69
3813 5440 5.070047 TGATTAGGAAATTACTCCCTCCGTC 59.930 44.000 0.00 0.00 35.95 4.79
3814 5441 2.117051 AGGAAATTACTCCCTCCGTCC 58.883 52.381 0.00 0.00 35.95 4.79
3815 5442 1.140452 GGAAATTACTCCCTCCGTCCC 59.860 57.143 0.00 0.00 0.00 4.46
3816 5443 1.835531 GAAATTACTCCCTCCGTCCCA 59.164 52.381 0.00 0.00 0.00 4.37
3817 5444 2.191981 AATTACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
3818 5445 3.339713 AATTACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
3819 5446 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
3820 5447 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
3821 5448 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3822 5449 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3823 5450 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
3824 5451 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
3825 5452 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
3826 5453 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3827 5454 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
3829 5456 2.132762 CCGTCCCATAATGTAAGACGC 58.867 52.381 5.39 0.00 46.66 5.19
3830 5457 2.223971 CCGTCCCATAATGTAAGACGCT 60.224 50.000 5.39 0.00 46.66 5.07
3831 5458 3.454375 CGTCCCATAATGTAAGACGCTT 58.546 45.455 0.00 0.00 43.07 4.68
3832 5459 3.869246 CGTCCCATAATGTAAGACGCTTT 59.131 43.478 0.00 0.00 43.07 3.51
3833 5460 4.331717 CGTCCCATAATGTAAGACGCTTTT 59.668 41.667 0.00 0.00 43.07 2.27
3834 5461 5.163794 CGTCCCATAATGTAAGACGCTTTTT 60.164 40.000 0.00 0.00 43.07 1.94
3835 5462 6.027749 GTCCCATAATGTAAGACGCTTTTTG 58.972 40.000 0.00 0.00 0.00 2.44
3836 5463 5.941058 TCCCATAATGTAAGACGCTTTTTGA 59.059 36.000 0.00 0.00 0.00 2.69
3837 5464 6.027749 CCCATAATGTAAGACGCTTTTTGAC 58.972 40.000 0.00 0.00 0.00 3.18
3838 5465 6.348950 CCCATAATGTAAGACGCTTTTTGACA 60.349 38.462 0.00 0.00 0.00 3.58
3839 5466 6.523201 CCATAATGTAAGACGCTTTTTGACAC 59.477 38.462 0.00 0.00 0.00 3.67
3840 5467 5.751243 AATGTAAGACGCTTTTTGACACT 57.249 34.783 0.00 0.00 0.00 3.55
3841 5468 6.854496 AATGTAAGACGCTTTTTGACACTA 57.146 33.333 0.00 0.00 0.00 2.74
3842 5469 5.646467 TGTAAGACGCTTTTTGACACTAC 57.354 39.130 0.00 0.00 0.00 2.73
3843 5470 5.110598 TGTAAGACGCTTTTTGACACTACA 58.889 37.500 0.00 0.00 0.00 2.74
3844 5471 4.531659 AAGACGCTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
3845 5472 3.793559 AGACGCTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
3846 5473 4.940463 AGACGCTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
3847 5474 4.982916 AGACGCTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
3848 5475 4.690122 ACGCTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
3877 5504 6.693315 AAAACATCTTACATTATGGGACGG 57.307 37.500 0.00 0.00 0.00 4.79
3878 5505 5.623956 AACATCTTACATTATGGGACGGA 57.376 39.130 0.00 0.00 0.00 4.69
3879 5506 5.215252 ACATCTTACATTATGGGACGGAG 57.785 43.478 0.00 0.00 0.00 4.63
3880 5507 4.040461 ACATCTTACATTATGGGACGGAGG 59.960 45.833 0.00 0.00 0.00 4.30
3881 5508 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
3882 5509 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3883 5510 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3884 5511 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
3885 5512 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
3886 5513 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
4025 5652 6.150976 TGCTTTATGCTTGCAGTAATGTTACT 59.849 34.615 0.87 0.00 42.54 2.24
4282 5911 5.589855 CAGTGGCATACAAATGTATCCTTGA 59.410 40.000 16.18 2.60 39.06 3.02
4397 6026 5.984695 TCCATCGTATCTGAGGGATTTAG 57.015 43.478 0.00 0.00 43.42 1.85
4622 6251 5.367945 AAAACCTATGACCATCCACGTAT 57.632 39.130 0.00 0.00 0.00 3.06
4664 6293 7.147976 AGAAAAATATTGTGTTCAACTCCAGC 58.852 34.615 8.63 0.00 36.33 4.85
4750 6379 2.756760 CCTACGGTGCTGAAGGTACTAA 59.243 50.000 0.00 0.00 38.49 2.24
4751 6380 3.181489 CCTACGGTGCTGAAGGTACTAAG 60.181 52.174 0.00 0.00 38.49 2.18
4752 6381 2.522185 ACGGTGCTGAAGGTACTAAGA 58.478 47.619 0.00 0.00 38.49 2.10
4755 6384 2.168728 GGTGCTGAAGGTACTAAGAGGG 59.831 54.545 0.00 0.00 38.49 4.30
4758 6387 3.908103 TGCTGAAGGTACTAAGAGGGTTT 59.092 43.478 0.00 0.00 38.49 3.27
4759 6388 4.254492 GCTGAAGGTACTAAGAGGGTTTG 58.746 47.826 0.00 0.00 38.49 2.93
4760 6389 4.254492 CTGAAGGTACTAAGAGGGTTTGC 58.746 47.826 0.00 0.00 38.49 3.68
4789 6418 1.759881 CAGATGATCCTGGGCTCCC 59.240 63.158 0.00 0.00 0.00 4.30
4800 6429 0.395173 TGGGCTCCCGGCTATTTTTC 60.395 55.000 0.00 0.00 41.46 2.29
4802 6431 1.444917 GGCTCCCGGCTATTTTTCGG 61.445 60.000 0.00 0.00 43.05 4.30
4803 6432 0.463116 GCTCCCGGCTATTTTTCGGA 60.463 55.000 0.00 0.00 45.96 4.55
4804 6433 1.583054 CTCCCGGCTATTTTTCGGAG 58.417 55.000 0.00 0.00 45.96 4.63
4806 6435 1.279846 TCCCGGCTATTTTTCGGAGTT 59.720 47.619 0.00 0.00 45.96 3.01
4807 6436 1.669265 CCCGGCTATTTTTCGGAGTTC 59.331 52.381 0.00 0.00 45.96 3.01
5020 6649 1.076024 AGCCTGTGGATGATGTGGTTT 59.924 47.619 0.00 0.00 0.00 3.27
5063 6692 5.129815 ACTCTACTTACCACCTGTTTGTTCA 59.870 40.000 0.00 0.00 0.00 3.18
5266 6895 4.664677 GACACGGCGCAGGTCACT 62.665 66.667 13.26 0.00 0.00 3.41
5416 7045 3.100671 CTCCAAGAACTAGGCAGTAGGT 58.899 50.000 0.00 0.00 33.48 3.08
5441 7071 5.591472 GCATAGGCTGATATTCATATGGCAA 59.409 40.000 2.13 0.00 36.96 4.52
5442 7072 6.264744 GCATAGGCTGATATTCATATGGCAAT 59.735 38.462 2.13 0.00 36.96 3.56
5443 7073 7.649057 CATAGGCTGATATTCATATGGCAATG 58.351 38.462 2.13 0.00 0.00 2.82
5523 7154 5.751028 CCTATCCAGTTTGAGATTCGACTTC 59.249 44.000 0.00 0.00 0.00 3.01
5526 7157 3.929610 CCAGTTTGAGATTCGACTTCCTC 59.070 47.826 0.00 0.00 0.00 3.71
5527 7158 4.322349 CCAGTTTGAGATTCGACTTCCTCT 60.322 45.833 0.00 0.00 0.00 3.69
5530 7161 5.245075 AGTTTGAGATTCGACTTCCTCTTCT 59.755 40.000 0.00 0.00 0.00 2.85
5532 7163 5.317733 TGAGATTCGACTTCCTCTTCTTC 57.682 43.478 0.00 0.00 0.00 2.87
5635 7270 9.935241 TTTAGCCAACATAAGAAAATGCAATAA 57.065 25.926 0.00 0.00 0.00 1.40
5736 7371 5.670485 TGCAACTGGTACTCCTAACATATG 58.330 41.667 0.00 0.00 34.23 1.78
5740 7375 7.632028 GCAACTGGTACTCCTAACATATGTACA 60.632 40.741 9.21 0.00 36.26 2.90
5764 7399 7.276438 ACAGCTTTTGTTGAGAAAAATCAGTTC 59.724 33.333 0.00 0.00 36.31 3.01
5767 7402 8.962111 GCTTTTGTTGAGAAAAATCAGTTCTAG 58.038 33.333 0.00 0.00 35.46 2.43
5797 7432 8.821686 ACTACAATAACCAAATGATCCATCAA 57.178 30.769 0.00 0.00 40.69 2.57
5801 7436 9.199645 ACAATAACCAAATGATCCATCAACATA 57.800 29.630 0.00 0.00 40.69 2.29
5804 7439 7.664552 AACCAAATGATCCATCAACATATGT 57.335 32.000 1.41 1.41 40.69 2.29
5861 7496 3.728385 AAGAACCCAAAGAGATGGAGG 57.272 47.619 0.00 0.00 43.54 4.30
5863 7498 0.332972 AACCCAAAGAGATGGAGGCC 59.667 55.000 0.00 0.00 43.54 5.19
5874 7509 2.582636 AGATGGAGGCCCACAAGTTAAT 59.417 45.455 0.00 0.00 46.98 1.40
5942 7685 3.026630 TCGGATGCGATAACCAATCTC 57.973 47.619 4.75 0.00 31.87 2.75
5954 7697 4.843220 AACCAATCTCAAGAGTTTGCAG 57.157 40.909 13.02 5.82 37.01 4.41
5955 7698 4.090761 ACCAATCTCAAGAGTTTGCAGA 57.909 40.909 13.02 0.00 37.01 4.26
5956 7699 4.070716 ACCAATCTCAAGAGTTTGCAGAG 58.929 43.478 13.02 5.02 37.01 3.35
5957 7700 4.070716 CCAATCTCAAGAGTTTGCAGAGT 58.929 43.478 13.02 0.00 37.01 3.24
5958 7701 4.083431 CCAATCTCAAGAGTTTGCAGAGTG 60.083 45.833 13.02 5.86 37.01 3.51
5959 7702 2.487934 TCTCAAGAGTTTGCAGAGTGC 58.512 47.619 0.00 0.00 45.29 4.40
6056 8208 4.834496 TGCTCCATCTTGAGATTTGGTTTT 59.166 37.500 1.68 0.00 34.11 2.43
6117 8269 7.508977 TCCTTAAAATTTTCACTCAATCCACCT 59.491 33.333 6.72 0.00 0.00 4.00
6134 8286 3.247648 CCACCTTTATCGCCGTTATTGAG 59.752 47.826 0.00 0.00 0.00 3.02
6147 8299 5.665459 CCGTTATTGAGACTTCCTTGAGAT 58.335 41.667 0.00 0.00 0.00 2.75
6150 8302 7.119846 CCGTTATTGAGACTTCCTTGAGATTTT 59.880 37.037 0.00 0.00 0.00 1.82
6152 8304 8.787852 GTTATTGAGACTTCCTTGAGATTTTGT 58.212 33.333 0.00 0.00 0.00 2.83
6155 8307 8.553459 TTGAGACTTCCTTGAGATTTTGTATC 57.447 34.615 0.00 0.00 0.00 2.24
6156 8308 7.106239 TGAGACTTCCTTGAGATTTTGTATCC 58.894 38.462 0.00 0.00 0.00 2.59
6157 8309 6.418946 AGACTTCCTTGAGATTTTGTATCCC 58.581 40.000 0.00 0.00 0.00 3.85
6158 8310 5.510430 ACTTCCTTGAGATTTTGTATCCCC 58.490 41.667 0.00 0.00 0.00 4.81
6159 8311 5.015178 ACTTCCTTGAGATTTTGTATCCCCA 59.985 40.000 0.00 0.00 0.00 4.96
6160 8312 5.528600 TCCTTGAGATTTTGTATCCCCAA 57.471 39.130 0.00 0.00 0.00 4.12
6186 8355 5.432885 AACCCTTACAAAAGAATCGTGTG 57.567 39.130 0.00 0.00 34.37 3.82
6190 8359 4.693566 CCTTACAAAAGAATCGTGTGCCTA 59.306 41.667 0.00 0.00 34.37 3.93
6235 8404 4.142182 TGCCTTTTCTTCAAACTTGACAGG 60.142 41.667 0.00 0.00 36.83 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.744719 TGTCCGTTCGGCGAGGAG 61.745 66.667 17.10 9.36 44.77 3.69
7 8 4.351938 TGTGTCCGTTCGGCGAGG 62.352 66.667 10.46 9.51 44.77 4.63
9 10 4.986587 CGTGTGTCCGTTCGGCGA 62.987 66.667 4.99 4.99 44.77 5.54
10 11 4.986587 TCGTGTGTCCGTTCGGCG 62.987 66.667 0.00 0.00 40.95 6.46
11 12 3.400590 GTCGTGTGTCCGTTCGGC 61.401 66.667 6.35 2.90 0.00 5.54
12 13 3.095278 CGTCGTGTGTCCGTTCGG 61.095 66.667 4.74 4.74 0.00 4.30
13 14 1.940758 AACGTCGTGTGTCCGTTCG 60.941 57.895 0.00 0.00 40.46 3.95
14 15 4.002037 AACGTCGTGTGTCCGTTC 57.998 55.556 0.00 0.00 40.46 3.95
15 16 1.940758 CGAACGTCGTGTGTCCGTT 60.941 57.895 0.00 0.00 46.38 4.44
16 17 2.352686 CGAACGTCGTGTGTCCGT 60.353 61.111 0.00 0.00 34.72 4.69
17 18 3.749373 GCGAACGTCGTGTGTCCG 61.749 66.667 0.00 0.00 42.81 4.79
18 19 3.400590 GGCGAACGTCGTGTGTCC 61.401 66.667 0.00 0.00 42.81 4.02
19 20 3.749373 CGGCGAACGTCGTGTGTC 61.749 66.667 12.89 0.00 42.81 3.67
21 22 4.986587 TCCGGCGAACGTCGTGTG 62.987 66.667 18.85 5.20 42.81 3.82
22 23 4.268939 TTCCGGCGAACGTCGTGT 62.269 61.111 18.85 0.00 42.81 4.49
23 24 3.759828 GTTCCGGCGAACGTCGTG 61.760 66.667 18.85 10.99 42.81 4.35
29 30 2.090524 CCTACACGTTCCGGCGAAC 61.091 63.158 9.30 10.25 44.24 3.95
30 31 2.259204 CCTACACGTTCCGGCGAA 59.741 61.111 9.30 0.00 35.59 4.70
31 32 2.985282 ACCTACACGTTCCGGCGA 60.985 61.111 9.30 0.00 35.59 5.54
32 33 2.752322 TTCACCTACACGTTCCGGCG 62.752 60.000 0.00 0.00 37.94 6.46
33 34 0.600782 TTTCACCTACACGTTCCGGC 60.601 55.000 0.00 0.00 0.00 6.13
34 35 1.142474 GTTTCACCTACACGTTCCGG 58.858 55.000 0.00 0.00 0.00 5.14
35 36 1.790623 CAGTTTCACCTACACGTTCCG 59.209 52.381 0.00 0.00 0.00 4.30
36 37 1.529865 GCAGTTTCACCTACACGTTCC 59.470 52.381 0.00 0.00 0.00 3.62
37 38 2.475487 GAGCAGTTTCACCTACACGTTC 59.525 50.000 0.00 0.00 0.00 3.95
38 39 2.102588 AGAGCAGTTTCACCTACACGTT 59.897 45.455 0.00 0.00 0.00 3.99
39 40 1.687123 AGAGCAGTTTCACCTACACGT 59.313 47.619 0.00 0.00 0.00 4.49
40 41 2.440539 AGAGCAGTTTCACCTACACG 57.559 50.000 0.00 0.00 0.00 4.49
41 42 2.731976 CGAAGAGCAGTTTCACCTACAC 59.268 50.000 0.00 0.00 0.00 2.90
42 43 3.026630 CGAAGAGCAGTTTCACCTACA 57.973 47.619 0.00 0.00 0.00 2.74
55 56 3.112709 GTCGTGTGGGCGAAGAGC 61.113 66.667 0.00 0.00 42.82 4.09
56 57 2.805353 CGTCGTGTGGGCGAAGAG 60.805 66.667 0.00 0.00 42.82 2.85
64 65 2.867333 ATAGTGCGAGCGTCGTGTGG 62.867 60.000 8.72 0.00 42.81 4.17
65 66 1.514228 ATAGTGCGAGCGTCGTGTG 60.514 57.895 8.72 0.00 42.81 3.82
66 67 1.514228 CATAGTGCGAGCGTCGTGT 60.514 57.895 8.72 0.00 42.81 4.49
67 68 0.592500 ATCATAGTGCGAGCGTCGTG 60.593 55.000 8.72 0.75 42.81 4.35
68 69 0.942252 TATCATAGTGCGAGCGTCGT 59.058 50.000 8.72 0.00 42.81 4.34
69 70 1.194772 TCTATCATAGTGCGAGCGTCG 59.805 52.381 3.50 3.50 43.89 5.12
70 71 2.971430 TCTATCATAGTGCGAGCGTC 57.029 50.000 0.00 0.00 0.00 5.19
71 72 4.254492 TCTATCTATCATAGTGCGAGCGT 58.746 43.478 0.00 0.00 0.00 5.07
72 73 4.866682 TCTATCTATCATAGTGCGAGCG 57.133 45.455 0.00 0.00 0.00 5.03
73 74 5.518812 CCATCTATCTATCATAGTGCGAGC 58.481 45.833 0.00 0.00 0.00 5.03
74 75 5.067023 TGCCATCTATCTATCATAGTGCGAG 59.933 44.000 0.00 0.00 0.00 5.03
75 76 4.949856 TGCCATCTATCTATCATAGTGCGA 59.050 41.667 0.00 0.00 0.00 5.10
76 77 5.254339 TGCCATCTATCTATCATAGTGCG 57.746 43.478 0.00 0.00 0.00 5.34
77 78 6.638610 AGTTGCCATCTATCTATCATAGTGC 58.361 40.000 0.00 0.00 0.00 4.40
78 79 8.965819 ACTAGTTGCCATCTATCTATCATAGTG 58.034 37.037 0.00 0.00 0.00 2.74
79 80 9.540538 AACTAGTTGCCATCTATCTATCATAGT 57.459 33.333 7.48 0.00 0.00 2.12
86 87 9.143155 TGTGATTAACTAGTTGCCATCTATCTA 57.857 33.333 18.56 0.00 0.00 1.98
87 88 7.928706 GTGTGATTAACTAGTTGCCATCTATCT 59.071 37.037 18.56 0.00 0.00 1.98
88 89 7.710907 TGTGTGATTAACTAGTTGCCATCTATC 59.289 37.037 18.56 9.26 0.00 2.08
89 90 7.564793 TGTGTGATTAACTAGTTGCCATCTAT 58.435 34.615 18.56 0.65 0.00 1.98
90 91 6.941857 TGTGTGATTAACTAGTTGCCATCTA 58.058 36.000 18.56 7.67 0.00 1.98
91 92 5.804639 TGTGTGATTAACTAGTTGCCATCT 58.195 37.500 18.56 0.00 0.00 2.90
92 93 6.316140 TCATGTGTGATTAACTAGTTGCCATC 59.684 38.462 18.56 15.47 0.00 3.51
93 94 6.094048 GTCATGTGTGATTAACTAGTTGCCAT 59.906 38.462 18.56 7.36 36.60 4.40
94 95 5.411361 GTCATGTGTGATTAACTAGTTGCCA 59.589 40.000 18.56 9.87 36.60 4.92
95 96 5.411361 TGTCATGTGTGATTAACTAGTTGCC 59.589 40.000 18.56 7.46 36.60 4.52
96 97 6.480524 TGTCATGTGTGATTAACTAGTTGC 57.519 37.500 18.56 8.02 36.60 4.17
106 107 8.677300 GGTCAACTATAATTGTCATGTGTGATT 58.323 33.333 0.00 0.00 36.60 2.57
107 108 7.828717 TGGTCAACTATAATTGTCATGTGTGAT 59.171 33.333 0.00 0.00 36.60 3.06
108 109 7.164803 TGGTCAACTATAATTGTCATGTGTGA 58.835 34.615 0.00 0.00 0.00 3.58
109 110 7.376435 TGGTCAACTATAATTGTCATGTGTG 57.624 36.000 0.00 0.00 0.00 3.82
110 111 9.109393 GTATGGTCAACTATAATTGTCATGTGT 57.891 33.333 12.26 0.00 31.87 3.72
111 112 9.108284 TGTATGGTCAACTATAATTGTCATGTG 57.892 33.333 12.26 0.00 31.87 3.21
112 113 9.851686 ATGTATGGTCAACTATAATTGTCATGT 57.148 29.630 12.26 1.84 31.87 3.21
114 115 9.288576 CCATGTATGGTCAACTATAATTGTCAT 57.711 33.333 2.66 9.21 43.05 3.06
115 116 8.675705 CCATGTATGGTCAACTATAATTGTCA 57.324 34.615 2.66 0.00 43.05 3.58
132 133 6.039605 TGGTCAAATCATAGTTGCCATGTATG 59.960 38.462 0.00 0.00 31.54 2.39
133 134 6.039717 GTGGTCAAATCATAGTTGCCATGTAT 59.960 38.462 6.55 0.00 35.82 2.29
134 135 5.356751 GTGGTCAAATCATAGTTGCCATGTA 59.643 40.000 6.55 0.00 35.82 2.29
135 136 4.158394 GTGGTCAAATCATAGTTGCCATGT 59.842 41.667 6.55 0.00 35.82 3.21
136 137 4.158209 TGTGGTCAAATCATAGTTGCCATG 59.842 41.667 6.55 0.00 35.82 3.66
137 138 4.158394 GTGTGGTCAAATCATAGTTGCCAT 59.842 41.667 6.55 0.00 35.82 4.40
138 139 3.505680 GTGTGGTCAAATCATAGTTGCCA 59.494 43.478 0.00 0.00 33.00 4.92
139 140 3.426159 CGTGTGGTCAAATCATAGTTGCC 60.426 47.826 0.00 0.00 0.00 4.52
140 141 3.188460 ACGTGTGGTCAAATCATAGTTGC 59.812 43.478 0.00 0.00 0.00 4.17
141 142 4.378356 CCACGTGTGGTCAAATCATAGTTG 60.378 45.833 15.65 0.00 45.53 3.16
142 143 3.751175 CCACGTGTGGTCAAATCATAGTT 59.249 43.478 15.65 0.00 45.53 2.24
143 144 3.334691 CCACGTGTGGTCAAATCATAGT 58.665 45.455 15.65 0.00 45.53 2.12
156 157 3.743911 TGATTAACTAGTTGCCACGTGTG 59.256 43.478 18.56 7.24 0.00 3.82
157 158 3.744426 GTGATTAACTAGTTGCCACGTGT 59.256 43.478 18.56 0.00 0.00 4.49
158 159 3.743911 TGTGATTAACTAGTTGCCACGTG 59.256 43.478 18.56 9.08 0.00 4.49
159 160 3.744426 GTGTGATTAACTAGTTGCCACGT 59.256 43.478 18.56 0.00 0.00 4.49
160 161 3.743911 TGTGTGATTAACTAGTTGCCACG 59.256 43.478 18.56 0.00 0.00 4.94
161 162 4.083484 GGTGTGTGATTAACTAGTTGCCAC 60.083 45.833 18.56 19.76 0.00 5.01
162 163 4.069304 GGTGTGTGATTAACTAGTTGCCA 58.931 43.478 18.56 9.87 0.00 4.92
163 164 4.069304 TGGTGTGTGATTAACTAGTTGCC 58.931 43.478 18.56 7.46 0.00 4.52
164 165 4.513692 TGTGGTGTGTGATTAACTAGTTGC 59.486 41.667 18.56 8.02 0.00 4.17
165 166 6.612247 TTGTGGTGTGTGATTAACTAGTTG 57.388 37.500 18.56 0.00 0.00 3.16
166 167 7.817418 AATTGTGGTGTGTGATTAACTAGTT 57.183 32.000 13.68 13.68 0.00 2.24
170 171 9.515226 AACTATAATTGTGGTGTGTGATTAACT 57.485 29.630 0.00 0.00 0.00 2.24
171 172 9.554724 CAACTATAATTGTGGTGTGTGATTAAC 57.445 33.333 0.00 0.00 0.00 2.01
172 173 9.508642 TCAACTATAATTGTGGTGTGTGATTAA 57.491 29.630 0.00 0.00 0.00 1.40
173 174 8.941977 GTCAACTATAATTGTGGTGTGTGATTA 58.058 33.333 0.00 0.00 0.00 1.75
174 175 7.094377 GGTCAACTATAATTGTGGTGTGTGATT 60.094 37.037 0.00 0.00 0.00 2.57
175 176 6.374333 GGTCAACTATAATTGTGGTGTGTGAT 59.626 38.462 0.00 0.00 0.00 3.06
176 177 5.703592 GGTCAACTATAATTGTGGTGTGTGA 59.296 40.000 0.00 0.00 0.00 3.58
177 178 5.471797 TGGTCAACTATAATTGTGGTGTGTG 59.528 40.000 0.00 0.00 0.00 3.82
178 179 5.626142 TGGTCAACTATAATTGTGGTGTGT 58.374 37.500 0.00 0.00 0.00 3.72
179 180 6.757897 ATGGTCAACTATAATTGTGGTGTG 57.242 37.500 0.00 0.00 0.00 3.82
180 181 7.398829 TGTATGGTCAACTATAATTGTGGTGT 58.601 34.615 0.00 0.00 0.00 4.16
181 182 7.857734 TGTATGGTCAACTATAATTGTGGTG 57.142 36.000 0.00 0.00 0.00 4.17
182 183 8.271458 TCATGTATGGTCAACTATAATTGTGGT 58.729 33.333 0.00 0.00 0.00 4.16
183 184 8.559536 GTCATGTATGGTCAACTATAATTGTGG 58.440 37.037 0.00 0.00 0.00 4.17
184 185 9.108284 TGTCATGTATGGTCAACTATAATTGTG 57.892 33.333 0.00 0.00 0.00 3.33
185 186 9.679661 TTGTCATGTATGGTCAACTATAATTGT 57.320 29.630 0.00 0.00 0.00 2.71
186 187 9.935682 GTTGTCATGTATGGTCAACTATAATTG 57.064 33.333 17.56 0.00 38.55 2.32
187 188 9.905713 AGTTGTCATGTATGGTCAACTATAATT 57.094 29.630 21.89 8.47 43.62 1.40
192 193 7.272244 CCATAGTTGTCATGTATGGTCAACTA 58.728 38.462 25.62 25.62 45.99 2.24
193 194 6.115446 CCATAGTTGTCATGTATGGTCAACT 58.885 40.000 24.17 24.17 45.26 3.16
194 195 6.363577 CCATAGTTGTCATGTATGGTCAAC 57.636 41.667 17.34 17.34 38.86 3.18
199 200 6.183360 GGTCAAACCATAGTTGTCATGTATGG 60.183 42.308 14.67 14.67 46.02 2.74
200 201 6.374053 TGGTCAAACCATAGTTGTCATGTATG 59.626 38.462 0.00 0.00 44.79 2.39
201 202 6.480763 TGGTCAAACCATAGTTGTCATGTAT 58.519 36.000 0.00 0.00 44.79 2.29
202 203 5.870706 TGGTCAAACCATAGTTGTCATGTA 58.129 37.500 0.00 0.00 44.79 2.29
203 204 4.724399 TGGTCAAACCATAGTTGTCATGT 58.276 39.130 0.00 0.00 44.79 3.21
216 217 1.329599 GTTCTCACGTGTGGTCAAACC 59.670 52.381 16.51 0.00 39.22 3.27
217 218 2.277084 AGTTCTCACGTGTGGTCAAAC 58.723 47.619 16.51 12.71 0.00 2.93
218 219 2.546778 GAGTTCTCACGTGTGGTCAAA 58.453 47.619 16.51 0.29 0.00 2.69
219 220 1.202486 GGAGTTCTCACGTGTGGTCAA 60.202 52.381 16.51 0.67 0.00 3.18
220 221 0.387929 GGAGTTCTCACGTGTGGTCA 59.612 55.000 16.51 0.00 0.00 4.02
221 222 0.387929 TGGAGTTCTCACGTGTGGTC 59.612 55.000 16.51 10.53 0.00 4.02
222 223 0.828022 TTGGAGTTCTCACGTGTGGT 59.172 50.000 16.51 1.65 0.00 4.16
223 224 2.169832 ATTGGAGTTCTCACGTGTGG 57.830 50.000 16.51 10.01 0.00 4.17
224 225 4.307432 ACTAATTGGAGTTCTCACGTGTG 58.693 43.478 16.51 13.78 0.00 3.82
225 226 4.602340 ACTAATTGGAGTTCTCACGTGT 57.398 40.909 16.51 0.00 0.00 4.49
226 227 5.924254 TGTAACTAATTGGAGTTCTCACGTG 59.076 40.000 9.94 9.94 40.22 4.49
227 228 5.924825 GTGTAACTAATTGGAGTTCTCACGT 59.075 40.000 0.00 0.00 40.22 4.49
228 229 5.924254 TGTGTAACTAATTGGAGTTCTCACG 59.076 40.000 16.05 0.00 41.74 4.35
229 230 7.148407 CCATGTGTAACTAATTGGAGTTCTCAC 60.148 40.741 15.17 15.17 40.22 3.51
230 231 6.878923 CCATGTGTAACTAATTGGAGTTCTCA 59.121 38.462 0.00 0.00 40.22 3.27
231 232 6.183360 GCCATGTGTAACTAATTGGAGTTCTC 60.183 42.308 0.00 0.00 40.22 2.87
232 233 5.648092 GCCATGTGTAACTAATTGGAGTTCT 59.352 40.000 0.00 0.00 40.22 3.01
233 234 5.414454 TGCCATGTGTAACTAATTGGAGTTC 59.586 40.000 0.00 0.00 40.22 3.01
234 235 5.321102 TGCCATGTGTAACTAATTGGAGTT 58.679 37.500 0.00 0.00 42.35 3.01
235 236 4.917385 TGCCATGTGTAACTAATTGGAGT 58.083 39.130 0.00 0.00 38.04 3.85
236 237 5.415701 AGTTGCCATGTGTAACTAATTGGAG 59.584 40.000 13.26 0.00 46.46 3.86
237 238 5.321102 AGTTGCCATGTGTAACTAATTGGA 58.679 37.500 13.26 0.00 46.46 3.53
238 239 5.643379 AGTTGCCATGTGTAACTAATTGG 57.357 39.130 13.26 0.00 46.46 3.16
269 270 9.936759 TGTGTGATCTTTAGTTGTTATGTATCA 57.063 29.630 0.00 0.00 0.00 2.15
272 273 9.161629 CCATGTGTGATCTTTAGTTGTTATGTA 57.838 33.333 0.00 0.00 0.00 2.29
273 274 7.362056 GCCATGTGTGATCTTTAGTTGTTATGT 60.362 37.037 0.00 0.00 0.00 2.29
274 275 6.968904 GCCATGTGTGATCTTTAGTTGTTATG 59.031 38.462 0.00 0.00 0.00 1.90
275 276 6.658816 TGCCATGTGTGATCTTTAGTTGTTAT 59.341 34.615 0.00 0.00 0.00 1.89
276 277 6.000840 TGCCATGTGTGATCTTTAGTTGTTA 58.999 36.000 0.00 0.00 0.00 2.41
277 278 4.826733 TGCCATGTGTGATCTTTAGTTGTT 59.173 37.500 0.00 0.00 0.00 2.83
278 279 4.397420 TGCCATGTGTGATCTTTAGTTGT 58.603 39.130 0.00 0.00 0.00 3.32
279 280 5.048504 AGTTGCCATGTGTGATCTTTAGTTG 60.049 40.000 0.00 0.00 0.00 3.16
280 281 5.072741 AGTTGCCATGTGTGATCTTTAGTT 58.927 37.500 0.00 0.00 0.00 2.24
281 282 4.655963 AGTTGCCATGTGTGATCTTTAGT 58.344 39.130 0.00 0.00 0.00 2.24
282 283 5.633830 AAGTTGCCATGTGTGATCTTTAG 57.366 39.130 0.00 0.00 0.00 1.85
283 284 6.714810 ACTAAAGTTGCCATGTGTGATCTTTA 59.285 34.615 0.00 0.00 0.00 1.85
284 285 4.942761 AAAGTTGCCATGTGTGATCTTT 57.057 36.364 0.00 0.00 0.00 2.52
285 286 5.072741 ACTAAAGTTGCCATGTGTGATCTT 58.927 37.500 0.00 0.00 0.00 2.40
286 287 4.655963 ACTAAAGTTGCCATGTGTGATCT 58.344 39.130 0.00 0.00 0.00 2.75
287 288 6.494893 TTACTAAAGTTGCCATGTGTGATC 57.505 37.500 0.00 0.00 0.00 2.92
288 289 7.466746 AATTACTAAAGTTGCCATGTGTGAT 57.533 32.000 0.00 0.00 0.00 3.06
289 290 6.892658 AATTACTAAAGTTGCCATGTGTGA 57.107 33.333 0.00 0.00 0.00 3.58
290 291 7.962918 GTCTAATTACTAAAGTTGCCATGTGTG 59.037 37.037 0.00 0.00 0.00 3.82
291 292 7.663905 TGTCTAATTACTAAAGTTGCCATGTGT 59.336 33.333 0.00 0.00 0.00 3.72
292 293 8.039603 TGTCTAATTACTAAAGTTGCCATGTG 57.960 34.615 0.00 0.00 0.00 3.21
293 294 8.677300 CATGTCTAATTACTAAAGTTGCCATGT 58.323 33.333 0.00 0.00 0.00 3.21
294 295 8.131100 CCATGTCTAATTACTAAAGTTGCCATG 58.869 37.037 0.00 0.00 0.00 3.66
295 296 7.201821 GCCATGTCTAATTACTAAAGTTGCCAT 60.202 37.037 0.00 0.00 0.00 4.40
296 297 6.094881 GCCATGTCTAATTACTAAAGTTGCCA 59.905 38.462 0.00 0.00 0.00 4.92
297 298 6.094881 TGCCATGTCTAATTACTAAAGTTGCC 59.905 38.462 0.00 0.00 0.00 4.52
298 299 7.083875 TGCCATGTCTAATTACTAAAGTTGC 57.916 36.000 0.00 0.00 0.00 4.17
299 300 8.730680 AGTTGCCATGTCTAATTACTAAAGTTG 58.269 33.333 0.00 0.00 0.00 3.16
300 301 8.863872 AGTTGCCATGTCTAATTACTAAAGTT 57.136 30.769 0.00 0.00 0.00 2.66
313 314 9.326413 GTGTAATTAACTATAGTTGCCATGTCT 57.674 33.333 25.27 1.08 38.90 3.41
314 315 9.104965 TGTGTAATTAACTATAGTTGCCATGTC 57.895 33.333 25.27 12.58 38.90 3.06
315 316 9.627123 ATGTGTAATTAACTATAGTTGCCATGT 57.373 29.630 25.27 9.10 38.90 3.21
316 317 9.882996 CATGTGTAATTAACTATAGTTGCCATG 57.117 33.333 25.27 19.09 38.90 3.66
317 318 9.066892 CCATGTGTAATTAACTATAGTTGCCAT 57.933 33.333 25.27 12.98 38.90 4.40
318 319 8.050325 ACCATGTGTAATTAACTATAGTTGCCA 58.950 33.333 25.27 11.41 38.90 4.92
319 320 8.446599 ACCATGTGTAATTAACTATAGTTGCC 57.553 34.615 25.27 10.44 38.90 4.52
341 342 8.806634 CGCGTGTATAATAAACTTTAGTTACCA 58.193 33.333 0.00 0.00 37.25 3.25
342 343 8.807581 ACGCGTGTATAATAAACTTTAGTTACC 58.192 33.333 12.93 0.00 37.25 2.85
345 346 8.103924 CGAACGCGTGTATAATAAACTTTAGTT 58.896 33.333 14.98 0.00 40.50 2.24
346 347 7.484641 TCGAACGCGTGTATAATAAACTTTAGT 59.515 33.333 14.98 0.00 38.98 2.24
347 348 7.820757 TCGAACGCGTGTATAATAAACTTTAG 58.179 34.615 14.98 0.00 38.98 1.85
348 349 7.696035 TCTCGAACGCGTGTATAATAAACTTTA 59.304 33.333 14.98 0.00 38.98 1.85
349 350 6.527722 TCTCGAACGCGTGTATAATAAACTTT 59.472 34.615 14.98 0.00 38.98 2.66
350 351 6.021153 GTCTCGAACGCGTGTATAATAAACTT 60.021 38.462 14.98 0.00 38.98 2.66
351 352 5.453587 GTCTCGAACGCGTGTATAATAAACT 59.546 40.000 14.98 0.00 38.98 2.66
352 353 5.604004 CGTCTCGAACGCGTGTATAATAAAC 60.604 44.000 14.98 1.91 45.76 2.01
353 354 4.434266 CGTCTCGAACGCGTGTATAATAAA 59.566 41.667 14.98 0.00 45.76 1.40
354 355 3.961860 CGTCTCGAACGCGTGTATAATAA 59.038 43.478 14.98 0.00 45.76 1.40
355 356 3.534889 CGTCTCGAACGCGTGTATAATA 58.465 45.455 14.98 0.00 45.76 0.98
356 357 2.369600 CGTCTCGAACGCGTGTATAAT 58.630 47.619 14.98 0.00 45.76 1.28
357 358 1.801618 CGTCTCGAACGCGTGTATAA 58.198 50.000 14.98 0.00 45.76 0.98
358 359 3.497110 CGTCTCGAACGCGTGTATA 57.503 52.632 14.98 0.00 45.76 1.47
359 360 4.354935 CGTCTCGAACGCGTGTAT 57.645 55.556 14.98 0.00 45.76 2.29
367 368 0.790814 CTTCTTTGGGCGTCTCGAAC 59.209 55.000 0.00 0.00 0.00 3.95
368 369 0.677288 TCTTCTTTGGGCGTCTCGAA 59.323 50.000 0.00 0.00 0.00 3.71
369 370 0.895530 ATCTTCTTTGGGCGTCTCGA 59.104 50.000 0.00 0.00 0.00 4.04
370 371 1.726853 AATCTTCTTTGGGCGTCTCG 58.273 50.000 0.00 0.00 0.00 4.04
371 372 3.074412 TCAAATCTTCTTTGGGCGTCTC 58.926 45.455 0.00 0.00 0.00 3.36
372 373 3.140325 TCAAATCTTCTTTGGGCGTCT 57.860 42.857 0.00 0.00 0.00 4.18
373 374 4.440839 AATCAAATCTTCTTTGGGCGTC 57.559 40.909 0.00 0.00 0.00 5.19
374 375 5.622233 GCTTAATCAAATCTTCTTTGGGCGT 60.622 40.000 0.00 0.00 0.00 5.68
375 376 4.800471 GCTTAATCAAATCTTCTTTGGGCG 59.200 41.667 0.00 0.00 0.00 6.13
382 383 5.297776 CCACGGATGCTTAATCAAATCTTCT 59.702 40.000 0.00 0.00 36.98 2.85
562 566 0.832135 TTCCCTGAGTCCGTGAGCTT 60.832 55.000 0.00 0.00 0.00 3.74
585 589 9.023962 TCTTACCCTAAAACGTTTGTCTCTATA 57.976 33.333 15.46 0.15 0.00 1.31
590 594 8.370182 TCTTATCTTACCCTAAAACGTTTGTCT 58.630 33.333 15.46 1.16 0.00 3.41
597 601 7.325694 TCCAACTCTTATCTTACCCTAAAACG 58.674 38.462 0.00 0.00 0.00 3.60
605 609 4.390264 GGCCATCCAACTCTTATCTTACC 58.610 47.826 0.00 0.00 0.00 2.85
612 616 0.988832 AACCGGCCATCCAACTCTTA 59.011 50.000 0.00 0.00 0.00 2.10
613 617 0.112412 AAACCGGCCATCCAACTCTT 59.888 50.000 0.00 0.00 0.00 2.85
614 618 0.112412 AAAACCGGCCATCCAACTCT 59.888 50.000 0.00 0.00 0.00 3.24
615 619 0.526211 GAAAACCGGCCATCCAACTC 59.474 55.000 0.00 0.00 0.00 3.01
616 620 1.241315 CGAAAACCGGCCATCCAACT 61.241 55.000 0.00 0.00 33.91 3.16
626 630 0.994263 GACCGTGATACGAAAACCGG 59.006 55.000 0.00 0.00 46.05 5.28
650 654 1.160329 AAACGGTCACTGTGCTCTGC 61.160 55.000 2.12 0.00 0.00 4.26
651 655 1.003545 CAAAACGGTCACTGTGCTCTG 60.004 52.381 2.12 6.52 0.00 3.35
658 662 1.260561 CGGTCTTCAAAACGGTCACTG 59.739 52.381 0.00 0.00 0.00 3.66
701 705 1.982073 GATGCGTTTGGAGCGGAAGG 61.982 60.000 0.00 0.00 37.44 3.46
757 2239 1.227292 GAGGCCCGTCGGATCTTTC 60.227 63.158 14.39 0.00 0.00 2.62
758 2240 1.987855 TGAGGCCCGTCGGATCTTT 60.988 57.895 14.39 0.00 0.00 2.52
815 2317 0.693430 GAAGGGGGTTATCGGAGGGT 60.693 60.000 0.00 0.00 0.00 4.34
836 2338 7.501559 TGGTACTAGTAGCACTACTTATGGAAG 59.498 40.741 26.76 8.23 43.35 3.46
838 2340 6.903516 TGGTACTAGTAGCACTACTTATGGA 58.096 40.000 26.76 3.83 43.35 3.41
839 2341 6.294065 GCTGGTACTAGTAGCACTACTTATGG 60.294 46.154 26.76 16.24 43.35 2.74
840 2342 6.487331 AGCTGGTACTAGTAGCACTACTTATG 59.513 42.308 26.76 16.84 43.35 1.90
841 2343 6.603224 AGCTGGTACTAGTAGCACTACTTAT 58.397 40.000 26.76 8.34 43.35 1.73
842 2344 5.999044 AGCTGGTACTAGTAGCACTACTTA 58.001 41.667 26.76 8.03 43.35 2.24
843 2345 4.857679 AGCTGGTACTAGTAGCACTACTT 58.142 43.478 26.76 10.69 43.35 2.24
845 2347 3.565063 GGAGCTGGTACTAGTAGCACTAC 59.435 52.174 26.76 23.32 38.48 2.73
846 2348 3.201487 TGGAGCTGGTACTAGTAGCACTA 59.799 47.826 26.76 14.83 38.48 2.74
850 2352 3.430513 GGTTTGGAGCTGGTACTAGTAGC 60.431 52.174 22.42 22.42 37.71 3.58
881 2384 3.112075 AATCGTGCGGTGCGTCAG 61.112 61.111 0.00 0.00 0.00 3.51
882 2385 3.410516 CAATCGTGCGGTGCGTCA 61.411 61.111 0.00 0.00 0.00 4.35
883 2386 2.950172 AACAATCGTGCGGTGCGTC 61.950 57.895 0.00 0.00 0.00 5.19
884 2387 2.970324 AACAATCGTGCGGTGCGT 60.970 55.556 0.00 0.00 0.00 5.24
885 2388 2.499520 CAACAATCGTGCGGTGCG 60.500 61.111 0.00 0.00 0.00 5.34
886 2389 0.996727 GAACAACAATCGTGCGGTGC 60.997 55.000 0.00 0.00 0.00 5.01
887 2390 0.306228 TGAACAACAATCGTGCGGTG 59.694 50.000 0.00 0.00 0.00 4.94
888 2391 1.018148 TTGAACAACAATCGTGCGGT 58.982 45.000 0.00 0.00 33.18 5.68
889 2392 1.002900 AGTTGAACAACAATCGTGCGG 60.003 47.619 17.85 0.00 43.47 5.69
968 2508 2.662006 TCGAGCTGGATCAACAGAAG 57.338 50.000 0.00 0.00 40.97 2.85
1089 2629 2.360600 AGGAGCGAGACGAGCTGT 60.361 61.111 0.00 0.00 46.13 4.40
1104 2644 2.903357 CCGGTGGAGGTGATGAGG 59.097 66.667 0.00 0.00 0.00 3.86
1175 2715 2.674754 GCGACATGGGGGAGGAAA 59.325 61.111 0.00 0.00 0.00 3.13
1213 2754 4.072088 CAAACACTCGTCGGCCGC 62.072 66.667 23.51 15.21 36.19 6.53
1236 2777 7.202001 CCCAATTGGTGATGACAGAGTATAGTA 60.202 40.741 22.91 0.00 0.00 1.82
1237 2778 6.408548 CCCAATTGGTGATGACAGAGTATAGT 60.409 42.308 22.91 0.00 0.00 2.12
1238 2779 5.994054 CCCAATTGGTGATGACAGAGTATAG 59.006 44.000 22.91 0.00 0.00 1.31
1239 2780 5.687441 GCCCAATTGGTGATGACAGAGTATA 60.687 44.000 22.91 0.00 36.04 1.47
1240 2781 4.785301 CCCAATTGGTGATGACAGAGTAT 58.215 43.478 22.91 0.00 0.00 2.12
1261 2802 5.901884 CGATGACAAAGTATTAATCAACGCC 59.098 40.000 0.00 0.00 30.61 5.68
1264 2805 6.781138 TGGCGATGACAAAGTATTAATCAAC 58.219 36.000 0.00 0.00 0.00 3.18
1277 2818 1.246649 AGCACAATTGGCGATGACAA 58.753 45.000 10.83 0.00 33.93 3.18
1287 2828 9.282247 GACAGAGTATTAATCAAAGCACAATTG 57.718 33.333 3.24 3.24 0.00 2.32
1349 2890 0.899019 GAGAAGAGAAAGCGGAGGGT 59.101 55.000 0.00 0.00 0.00 4.34
1457 3009 2.595238 ACTGAAGAACACGAGGTAGGT 58.405 47.619 0.00 0.00 0.00 3.08
1507 3059 3.509184 AGAGGCTCCAAAAATCTGCTTTC 59.491 43.478 11.71 0.00 0.00 2.62
1512 3064 2.977914 TCGAGAGGCTCCAAAAATCTG 58.022 47.619 11.71 0.00 0.00 2.90
1551 3103 2.613026 AAAGGTTTGGGAAAAAGCCG 57.387 45.000 0.00 0.00 35.70 5.52
1565 3117 7.051623 TCAGATGTTGTGTAAACTGTAAAGGT 58.948 34.615 0.00 0.00 0.00 3.50
1566 3118 7.490962 TCAGATGTTGTGTAAACTGTAAAGG 57.509 36.000 0.00 0.00 0.00 3.11
1635 3187 0.961019 TCTTTTGTCATGGCAGGCAC 59.039 50.000 0.00 0.00 0.00 5.01
1637 3189 4.660789 AATATCTTTTGTCATGGCAGGC 57.339 40.909 0.00 0.00 0.00 4.85
1638 3190 6.949352 ACTAATATCTTTTGTCATGGCAGG 57.051 37.500 0.00 0.00 0.00 4.85
1687 3240 2.869801 GACATCGTCCAAACAGACACAA 59.130 45.455 0.00 0.00 36.52 3.33
1694 3247 1.414550 TGAGGTGACATCGTCCAAACA 59.585 47.619 0.00 0.00 0.00 2.83
1716 3269 3.801638 GCACTCTGCTTCTGAAGTCTGAA 60.802 47.826 17.97 1.36 40.96 3.02
1717 3270 2.288702 GCACTCTGCTTCTGAAGTCTGA 60.289 50.000 17.97 16.22 40.96 3.27
1718 3271 2.067766 GCACTCTGCTTCTGAAGTCTG 58.932 52.381 17.97 13.47 40.96 3.51
1719 3272 1.690893 TGCACTCTGCTTCTGAAGTCT 59.309 47.619 17.97 0.00 45.31 3.24
1720 3273 1.797635 GTGCACTCTGCTTCTGAAGTC 59.202 52.381 17.97 11.10 45.31 3.01
1721 3274 1.415659 AGTGCACTCTGCTTCTGAAGT 59.584 47.619 15.25 0.00 45.31 3.01
1722 3275 2.067766 GAGTGCACTCTGCTTCTGAAG 58.932 52.381 34.54 13.02 45.31 3.02
1782 3335 7.520119 TTACGTACTAACATGCTGAGATTTG 57.480 36.000 0.00 0.00 0.00 2.32
1785 3338 9.982651 AAATATTACGTACTAACATGCTGAGAT 57.017 29.630 0.00 0.00 0.00 2.75
1795 3348 9.868389 GCCCAACATTAAATATTACGTACTAAC 57.132 33.333 0.00 0.00 0.00 2.34
1972 3557 2.413837 GAGGCGTGCTAAGAACAGAAA 58.586 47.619 0.00 0.00 0.00 2.52
2024 3609 8.653191 TCCTTACAGTTCTAACAGTTTAATGGA 58.347 33.333 0.00 0.00 30.90 3.41
2171 3764 7.918536 ATCCTACAATCATCAATCATGTAGC 57.081 36.000 5.87 0.00 41.19 3.58
2467 4061 4.021280 TCCGCTTGTGTTAACTACATACCA 60.021 41.667 7.22 0.00 39.39 3.25
2503 4097 8.740616 ACATTAAATTCAAAGGGGGCATATAT 57.259 30.769 0.00 0.00 0.00 0.86
2515 4109 6.371595 AGCCCCATTGACATTAAATTCAAA 57.628 33.333 6.28 0.00 35.42 2.69
2558 4152 4.235372 ACCAATTATGTTTTGTTCCCCCA 58.765 39.130 0.00 0.00 0.00 4.96
2768 4362 0.749649 GATCAGAGGCATGGACGTCT 59.250 55.000 16.46 0.00 35.24 4.18
2834 4428 2.348591 GCAGCGTTGCGGAAATAGATAC 60.349 50.000 8.94 0.00 41.13 2.24
3804 5431 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3805 5432 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
3806 5433 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
3807 5434 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
3808 5435 2.223876 GCGTCTTACATTATGGGACGGA 60.224 50.000 25.20 5.94 46.26 4.69
3809 5436 2.132762 GCGTCTTACATTATGGGACGG 58.867 52.381 25.20 14.78 46.26 4.79
3811 5438 5.813080 AAAAGCGTCTTACATTATGGGAC 57.187 39.130 0.00 1.75 0.00 4.46
3812 5439 5.941058 TCAAAAAGCGTCTTACATTATGGGA 59.059 36.000 0.00 0.00 0.00 4.37
3813 5440 6.027749 GTCAAAAAGCGTCTTACATTATGGG 58.972 40.000 0.00 0.00 0.00 4.00
3814 5441 6.523201 GTGTCAAAAAGCGTCTTACATTATGG 59.477 38.462 0.00 0.00 0.00 2.74
3815 5442 7.298122 AGTGTCAAAAAGCGTCTTACATTATG 58.702 34.615 0.00 0.00 0.00 1.90
3816 5443 7.435068 AGTGTCAAAAAGCGTCTTACATTAT 57.565 32.000 0.00 0.00 0.00 1.28
3817 5444 6.854496 AGTGTCAAAAAGCGTCTTACATTA 57.146 33.333 0.00 0.00 0.00 1.90
3818 5445 5.751243 AGTGTCAAAAAGCGTCTTACATT 57.249 34.783 0.00 0.00 0.00 2.71
3819 5446 5.756347 TGTAGTGTCAAAAAGCGTCTTACAT 59.244 36.000 0.00 0.00 0.00 2.29
3820 5447 5.005971 GTGTAGTGTCAAAAAGCGTCTTACA 59.994 40.000 0.00 0.00 0.00 2.41
3821 5448 5.233689 AGTGTAGTGTCAAAAAGCGTCTTAC 59.766 40.000 0.00 0.00 0.00 2.34
3822 5449 5.353938 AGTGTAGTGTCAAAAAGCGTCTTA 58.646 37.500 0.00 0.00 0.00 2.10
3823 5450 4.189231 AGTGTAGTGTCAAAAAGCGTCTT 58.811 39.130 0.00 0.00 0.00 3.01
3824 5451 3.793559 AGTGTAGTGTCAAAAAGCGTCT 58.206 40.909 0.00 0.00 0.00 4.18
3825 5452 4.743644 ACTAGTGTAGTGTCAAAAAGCGTC 59.256 41.667 0.00 0.00 37.69 5.19
3826 5453 4.690122 ACTAGTGTAGTGTCAAAAAGCGT 58.310 39.130 0.00 0.00 37.69 5.07
3853 5480 6.887545 TCCGTCCCATAATGTAAGATGTTTTT 59.112 34.615 0.00 0.00 0.00 1.94
3854 5481 6.419791 TCCGTCCCATAATGTAAGATGTTTT 58.580 36.000 0.00 0.00 0.00 2.43
3855 5482 5.996644 TCCGTCCCATAATGTAAGATGTTT 58.003 37.500 0.00 0.00 0.00 2.83
3856 5483 5.454755 CCTCCGTCCCATAATGTAAGATGTT 60.455 44.000 0.00 0.00 0.00 2.71
3857 5484 4.040461 CCTCCGTCCCATAATGTAAGATGT 59.960 45.833 0.00 0.00 0.00 3.06
3858 5485 4.563580 CCCTCCGTCCCATAATGTAAGATG 60.564 50.000 0.00 0.00 0.00 2.90
3859 5486 3.583086 CCCTCCGTCCCATAATGTAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
3860 5487 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3861 5488 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
3862 5489 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
3863 5490 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
3864 5491 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3865 5492 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3866 5493 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
3867 5494 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
3868 5495 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
3869 5496 0.042131 TTGTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
3870 5497 0.178926 TTTGTACTCCCTCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
3871 5498 0.978907 TTTTGTACTCCCTCCGTCCC 59.021 55.000 0.00 0.00 0.00 4.46
3872 5499 3.007635 CAATTTTGTACTCCCTCCGTCC 58.992 50.000 0.00 0.00 0.00 4.79
3873 5500 3.671716 ACAATTTTGTACTCCCTCCGTC 58.328 45.455 0.00 0.00 40.16 4.79
3874 5501 3.782656 ACAATTTTGTACTCCCTCCGT 57.217 42.857 0.00 0.00 40.16 4.69
3875 5502 4.069304 TCAACAATTTTGTACTCCCTCCG 58.931 43.478 0.00 0.00 41.31 4.63
3876 5503 5.535030 AGTTCAACAATTTTGTACTCCCTCC 59.465 40.000 0.00 0.00 41.31 4.30
3877 5504 6.635030 AGTTCAACAATTTTGTACTCCCTC 57.365 37.500 0.00 0.00 41.31 4.30
3878 5505 6.379988 ACAAGTTCAACAATTTTGTACTCCCT 59.620 34.615 10.61 0.00 41.31 4.20
3879 5506 6.569780 ACAAGTTCAACAATTTTGTACTCCC 58.430 36.000 10.61 0.00 41.31 4.30
3880 5507 9.744468 ATAACAAGTTCAACAATTTTGTACTCC 57.256 29.630 10.61 0.00 41.31 3.85
4025 5652 5.541101 TGGTAAGAGTTGCTAGTTTACCTCA 59.459 40.000 18.22 6.18 42.27 3.86
4164 5793 6.018469 TGAAACATCAGGGAGGAAAATTGAT 58.982 36.000 0.00 0.00 0.00 2.57
4180 5809 9.823647 TTCTTGACTAGATATTCCTGAAACATC 57.176 33.333 0.00 0.00 31.54 3.06
4282 5911 7.171630 TCGGAGAAGCTAGAAGATTTAAGTT 57.828 36.000 0.00 0.00 0.00 2.66
4517 6146 5.059833 GCCCAAAACGATAATGAGAGAGAT 58.940 41.667 0.00 0.00 0.00 2.75
4579 6208 9.056005 GGTTTTTAGCATGTCATATGTCTATCA 57.944 33.333 1.90 0.00 0.00 2.15
4580 6209 9.277783 AGGTTTTTAGCATGTCATATGTCTATC 57.722 33.333 1.90 0.00 0.00 2.08
4584 6213 9.056005 TCATAGGTTTTTAGCATGTCATATGTC 57.944 33.333 1.90 0.00 0.00 3.06
4585 6214 8.840321 GTCATAGGTTTTTAGCATGTCATATGT 58.160 33.333 1.90 0.00 0.00 2.29
4586 6215 8.292448 GGTCATAGGTTTTTAGCATGTCATATG 58.708 37.037 0.00 0.00 0.00 1.78
4587 6216 7.998383 TGGTCATAGGTTTTTAGCATGTCATAT 59.002 33.333 0.00 0.00 0.00 1.78
4588 6217 7.342581 TGGTCATAGGTTTTTAGCATGTCATA 58.657 34.615 0.00 0.00 0.00 2.15
4589 6218 6.186957 TGGTCATAGGTTTTTAGCATGTCAT 58.813 36.000 0.00 0.00 0.00 3.06
4590 6219 5.565509 TGGTCATAGGTTTTTAGCATGTCA 58.434 37.500 0.00 0.00 0.00 3.58
4591 6220 6.238759 GGATGGTCATAGGTTTTTAGCATGTC 60.239 42.308 0.00 0.00 0.00 3.06
4657 6286 2.233271 CACCTGAAACATTGCTGGAGT 58.767 47.619 2.65 0.00 0.00 3.85
4750 6379 2.553247 GGTAAAGCTCAGCAAACCCTCT 60.553 50.000 0.00 0.00 0.00 3.69
4751 6380 1.813178 GGTAAAGCTCAGCAAACCCTC 59.187 52.381 0.00 0.00 0.00 4.30
4752 6381 1.144913 TGGTAAAGCTCAGCAAACCCT 59.855 47.619 11.41 0.00 0.00 4.34
4755 6384 3.753272 TCATCTGGTAAAGCTCAGCAAAC 59.247 43.478 0.00 0.00 0.00 2.93
4758 6387 3.432749 GGATCATCTGGTAAAGCTCAGCA 60.433 47.826 0.00 0.00 0.00 4.41
4759 6388 3.137533 GGATCATCTGGTAAAGCTCAGC 58.862 50.000 0.00 0.00 0.00 4.26
4760 6389 4.378774 CAGGATCATCTGGTAAAGCTCAG 58.621 47.826 0.00 0.00 0.00 3.35
4789 6418 2.351726 CAGGAACTCCGAAAAATAGCCG 59.648 50.000 0.00 0.00 42.08 5.52
4800 6429 1.734465 GCAAGATTGTCAGGAACTCCG 59.266 52.381 0.00 0.00 42.08 4.63
4802 6431 4.260170 AGATGCAAGATTGTCAGGAACTC 58.740 43.478 0.00 0.00 34.60 3.01
4803 6432 4.298103 AGATGCAAGATTGTCAGGAACT 57.702 40.909 0.00 0.00 43.88 3.01
4804 6433 7.976135 ATATAGATGCAAGATTGTCAGGAAC 57.024 36.000 0.00 0.00 0.00 3.62
4806 6435 8.819845 ACATATATAGATGCAAGATTGTCAGGA 58.180 33.333 7.26 0.00 0.00 3.86
4807 6436 9.096160 GACATATATAGATGCAAGATTGTCAGG 57.904 37.037 7.26 0.00 32.22 3.86
4978 6607 6.212955 GCTTTAGCCGGCAATTATTTAATCA 58.787 36.000 31.54 1.48 34.31 2.57
5063 6692 2.591715 GTCAACCTGGCAGTGCGT 60.592 61.111 14.43 0.95 0.00 5.24
5416 7045 5.128205 GCCATATGAATATCAGCCTATGCA 58.872 41.667 3.65 0.00 41.13 3.96
5441 7071 4.787551 TGAGAATTGTTATAACCGCCCAT 58.212 39.130 13.01 0.00 0.00 4.00
5442 7072 4.196193 CTGAGAATTGTTATAACCGCCCA 58.804 43.478 13.01 3.46 0.00 5.36
5443 7073 4.035208 CACTGAGAATTGTTATAACCGCCC 59.965 45.833 13.01 0.88 0.00 6.13
5502 7132 4.223923 AGGAAGTCGAATCTCAAACTGGAT 59.776 41.667 0.00 0.00 0.00 3.41
5595 7229 7.695480 TGTTGGCTAAATGATTGCTAAACTA 57.305 32.000 0.00 0.00 0.00 2.24
5736 7371 7.702348 ACTGATTTTTCTCAACAAAAGCTGTAC 59.298 33.333 4.70 0.00 38.86 2.90
5740 7375 7.550712 AGAACTGATTTTTCTCAACAAAAGCT 58.449 30.769 0.00 0.00 32.02 3.74
5764 7399 8.801882 TCATTTGGTTATTGTAGTTTCCCTAG 57.198 34.615 0.00 0.00 0.00 3.02
5767 7402 7.123547 TGGATCATTTGGTTATTGTAGTTTCCC 59.876 37.037 0.00 0.00 0.00 3.97
5827 7462 9.863845 TCTTTGGGTTCTTTTTACTGTTTTTAG 57.136 29.630 0.00 0.00 0.00 1.85
5874 7509 9.760077 TCCTTTATTTTTAACAAAATACCGCAA 57.240 25.926 0.59 0.00 42.22 4.85
5923 7666 2.754472 TGAGATTGGTTATCGCATCCG 58.246 47.619 0.00 0.00 38.02 4.18
5931 7674 6.240894 TCTGCAAACTCTTGAGATTGGTTAT 58.759 36.000 17.91 0.00 34.14 1.89
5942 7685 1.220529 TCGCACTCTGCAAACTCTTG 58.779 50.000 0.00 0.00 45.36 3.02
5954 7697 7.201393 CGATTCTTCTCCATATATTTCGCACTC 60.201 40.741 0.00 0.00 0.00 3.51
5955 7698 6.587990 CGATTCTTCTCCATATATTTCGCACT 59.412 38.462 0.00 0.00 0.00 4.40
5956 7699 6.366332 ACGATTCTTCTCCATATATTTCGCAC 59.634 38.462 0.00 0.00 0.00 5.34
5957 7700 6.455647 ACGATTCTTCTCCATATATTTCGCA 58.544 36.000 0.00 0.00 0.00 5.10
5958 7701 6.952935 ACGATTCTTCTCCATATATTTCGC 57.047 37.500 0.00 0.00 0.00 4.70
5959 7702 9.788960 TCATACGATTCTTCTCCATATATTTCG 57.211 33.333 0.00 0.00 0.00 3.46
6056 8208 3.135712 TCTGAGTGGCCAAGAACAGTAAA 59.864 43.478 7.24 0.00 0.00 2.01
6097 8249 8.028938 CGATAAAGGTGGATTGAGTGAAAATTT 58.971 33.333 0.00 0.00 0.00 1.82
6117 8269 4.807304 GGAAGTCTCAATAACGGCGATAAA 59.193 41.667 16.62 0.00 0.00 1.40
6134 8286 5.590663 GGGGATACAAAATCTCAAGGAAGTC 59.409 44.000 0.00 0.00 39.74 3.01
6155 8307 0.781278 TTGTAAGGGTTCCCTTGGGG 59.219 55.000 27.59 0.00 45.15 4.96
6156 8308 2.687003 TTTGTAAGGGTTCCCTTGGG 57.313 50.000 27.59 0.00 45.15 4.12
6157 8309 3.839778 TCTTTTGTAAGGGTTCCCTTGG 58.160 45.455 27.59 13.24 45.15 3.61
6158 8310 5.335661 CGATTCTTTTGTAAGGGTTCCCTTG 60.336 44.000 27.59 13.37 45.15 3.61
6159 8311 4.765339 CGATTCTTTTGTAAGGGTTCCCTT 59.235 41.667 24.08 24.08 46.89 3.95
6160 8312 4.202535 ACGATTCTTTTGTAAGGGTTCCCT 60.203 41.667 4.31 4.31 38.23 4.20
6235 8404 3.010420 GTGAACCTATCTGGCCTCAAAC 58.990 50.000 3.32 0.00 40.22 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.