Multiple sequence alignment - TraesCS7B01G164200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G164200 chr7B 100.000 3857 0 0 2338 6194 226576173 226580029 0.000000e+00 7123.0
1 TraesCS7B01G164200 chr7B 100.000 2088 0 0 1 2088 226573836 226575923 0.000000e+00 3856.0
2 TraesCS7B01G164200 chr7D 97.864 3277 54 7 2338 5607 249590157 249593424 0.000000e+00 5650.0
3 TraesCS7B01G164200 chr7D 91.131 1928 112 21 123 2023 249587875 249589770 0.000000e+00 2558.0
4 TraesCS7B01G164200 chr7D 96.335 191 7 0 5841 6031 249593422 249593612 1.300000e-81 315.0
5 TraesCS7B01G164200 chr7D 92.424 132 8 2 1 131 249587593 249587723 2.950000e-43 187.0
6 TraesCS7B01G164200 chr7D 93.636 110 6 1 5734 5842 598598578 598598469 4.970000e-36 163.0
7 TraesCS7B01G164200 chr7A 92.738 3167 117 45 2338 5439 271635506 271632388 0.000000e+00 4470.0
8 TraesCS7B01G164200 chr7A 87.383 2132 155 53 1 2088 271637579 271635518 0.000000e+00 2342.0
9 TraesCS7B01G164200 chr7A 91.453 117 8 2 5734 5849 629777853 629777738 6.430000e-35 159.0
10 TraesCS7B01G164200 chr4B 95.682 440 18 1 1438 1877 652315748 652316186 0.000000e+00 706.0
11 TraesCS7B01G164200 chr4B 79.259 135 8 6 5599 5733 366928824 366928938 6.660000e-10 76.8
12 TraesCS7B01G164200 chr6B 93.540 387 23 2 1491 1877 87006726 87007110 5.380000e-160 575.0
13 TraesCS7B01G164200 chr6B 87.736 106 9 1 5632 5733 347460003 347460108 3.030000e-23 121.0
14 TraesCS7B01G164200 chr6B 89.691 97 5 3 5646 5741 224208429 224208337 1.090000e-22 119.0
15 TraesCS7B01G164200 chr6B 97.222 36 1 0 86 121 255080007 255080042 1.860000e-05 62.1
16 TraesCS7B01G164200 chr2B 95.253 316 14 1 1562 1877 746592808 746593122 3.330000e-137 499.0
17 TraesCS7B01G164200 chr2B 87.037 54 2 5 5595 5645 464506868 464506817 8.670000e-04 56.5
18 TraesCS7B01G164200 chr2D 79.614 363 59 10 352 699 156381583 156381945 4.800000e-61 246.0
19 TraesCS7B01G164200 chr2D 93.636 110 6 1 5734 5842 164534259 164534368 4.970000e-36 163.0
20 TraesCS7B01G164200 chr2D 93.258 89 3 2 5646 5733 552189996 552189910 1.810000e-25 128.0
21 TraesCS7B01G164200 chr5B 78.218 404 53 21 350 723 57708 58106 6.250000e-55 226.0
22 TraesCS7B01G164200 chr5B 84.672 137 12 5 5604 5733 320862508 320862642 1.810000e-25 128.0
23 TraesCS7B01G164200 chr3D 78.415 366 61 7 352 699 446363807 446363442 8.080000e-54 222.0
24 TraesCS7B01G164200 chr3D 78.598 271 43 8 444 699 77136905 77136635 1.380000e-36 165.0
25 TraesCS7B01G164200 chr3D 93.636 110 6 1 5734 5842 365000848 365000957 4.970000e-36 163.0
26 TraesCS7B01G164200 chr3D 86.713 143 14 4 5594 5733 400337079 400337219 2.990000e-33 154.0
27 TraesCS7B01G164200 chr3D 93.258 89 3 2 5646 5733 267286431 267286517 1.810000e-25 128.0
28 TraesCS7B01G164200 chr3D 93.258 89 3 2 5646 5733 542080437 542080351 1.810000e-25 128.0
29 TraesCS7B01G164200 chr6D 78.552 373 50 8 356 699 230881391 230881762 1.050000e-52 219.0
30 TraesCS7B01G164200 chr6D 77.540 374 59 13 351 699 363952824 363953197 1.050000e-47 202.0
31 TraesCS7B01G164200 chr5A 78.593 327 59 9 4869 5190 504872859 504873179 8.140000e-49 206.0
32 TraesCS7B01G164200 chr5A 93.258 89 3 2 5646 5733 481114272 481114358 1.810000e-25 128.0
33 TraesCS7B01G164200 chr4D 93.694 111 6 1 5734 5843 125078544 125078654 1.380000e-36 165.0
34 TraesCS7B01G164200 chr4D 93.636 110 6 1 5734 5842 439129910 439129801 4.970000e-36 163.0
35 TraesCS7B01G164200 chr4D 92.174 115 7 2 5734 5847 106682269 106682382 1.790000e-35 161.0
36 TraesCS7B01G164200 chr1B 93.694 111 6 1 5734 5843 251466096 251466206 1.380000e-36 165.0
37 TraesCS7B01G164200 chr3A 90.756 119 9 2 5734 5850 19685951 19685833 2.310000e-34 158.0
38 TraesCS7B01G164200 chr3B 79.399 233 34 6 352 570 57057757 57057525 1.080000e-32 152.0
39 TraesCS7B01G164200 chr3B 93.182 88 5 1 5646 5733 554482610 554482696 1.810000e-25 128.0
40 TraesCS7B01G164200 chr3B 94.643 56 3 0 5678 5733 74655225 74655280 3.080000e-13 87.9
41 TraesCS7B01G164200 chr3B 93.478 46 2 1 87 132 422205192 422205236 4.010000e-07 67.6
42 TraesCS7B01G164200 chr5D 79.237 236 31 8 352 571 544972125 544972358 1.390000e-31 148.0
43 TraesCS7B01G164200 chr4A 85.714 133 14 3 5605 5733 476748247 476748116 1.080000e-27 135.0
44 TraesCS7B01G164200 chr4A 95.122 41 1 1 5605 5645 415886345 415886306 5.180000e-06 63.9
45 TraesCS7B01G164200 chr1D 91.935 62 5 0 5672 5733 184336047 184336108 3.080000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G164200 chr7B 226573836 226580029 6193 False 5489.5 7123 100.0000 1 6194 2 chr7B.!!$F1 6193
1 TraesCS7B01G164200 chr7D 249587593 249593612 6019 False 2177.5 5650 94.4385 1 6031 4 chr7D.!!$F1 6030
2 TraesCS7B01G164200 chr7A 271632388 271637579 5191 True 3406.0 4470 90.0605 1 5439 2 chr7A.!!$R2 5438

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
342 517 0.394899 CCTTTCTCACTCCATGCCCC 60.395 60.000 0.00 0.0 0.00 5.80 F
792 1000 0.818296 AACAGGCTCCTAGCAGTACG 59.182 55.000 0.78 0.0 44.75 3.67 F
883 1097 0.934496 CGTCAAACCAAGTCTCGCAA 59.066 50.000 0.00 0.0 0.00 4.85 F
1133 1347 1.134670 CCAATCTCGGTTCCTGGACTC 60.135 57.143 0.00 0.0 0.00 3.36 F
2042 2256 1.136891 GTTTGCTCAATGTATGCCCCC 59.863 52.381 0.00 0.0 0.00 5.40 F
3381 3910 7.069877 TGACCACAGTTACTACAGGTTTTAT 57.930 36.000 4.49 0.0 0.00 1.40 F
3585 4116 2.470821 CCCCGCAGAATCGTTTACTAG 58.529 52.381 0.00 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2056 2270 0.415830 TGAGGTATGGTGAGTGGGGA 59.584 55.000 0.00 0.00 0.00 4.81 R
2057 2271 0.833287 CTGAGGTATGGTGAGTGGGG 59.167 60.000 0.00 0.00 0.00 4.96 R
2058 2272 1.482593 GACTGAGGTATGGTGAGTGGG 59.517 57.143 0.00 0.00 0.00 4.61 R
2059 2273 2.179427 TGACTGAGGTATGGTGAGTGG 58.821 52.381 0.00 0.00 0.00 4.00 R
3541 4072 2.345760 GCAATGGAGGGCACACAGG 61.346 63.158 0.00 0.00 0.00 4.00 R
4208 4754 4.400567 AGGCTCATTATTCTCCTGCAAAAC 59.599 41.667 0.00 0.00 0.00 2.43 R
5531 6121 0.307146 GGTATCGAGAAGGACCGTCG 59.693 60.000 1.47 4.84 34.98 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 42 5.048643 GGGACAAAAGAGAAAAGCTAAGGAC 60.049 44.000 0.00 0.00 0.00 3.85
70 72 2.097142 CGGAGAAGGAAAGACGTACGAT 59.903 50.000 24.41 7.13 0.00 3.73
86 88 5.049886 ACGTACGATAGAAATATGAGTGCGA 60.050 40.000 24.41 0.00 38.98 5.10
256 431 9.918630 AGTGAAGAAACAATCATTCCTTTAATG 57.081 29.630 0.00 0.00 45.47 1.90
313 488 9.997172 AGATCATCCTATATGTGGACATAACTA 57.003 33.333 3.65 0.00 41.60 2.24
342 517 0.394899 CCTTTCTCACTCCATGCCCC 60.395 60.000 0.00 0.00 0.00 5.80
367 542 7.607607 CCAAAATCATGGGAGAATATCATACGA 59.392 37.037 0.00 0.00 36.79 3.43
424 599 8.655092 TCATGTGAAAACAATGTTTTGAAGTTC 58.345 29.630 26.34 12.79 36.64 3.01
425 600 7.357951 TGTGAAAACAATGTTTTGAAGTTCC 57.642 32.000 26.34 11.90 36.64 3.62
427 602 6.309251 GTGAAAACAATGTTTTGAAGTTCCGA 59.691 34.615 26.34 0.00 36.64 4.55
494 684 3.201353 TCAAGTTCAAACACATCCCGA 57.799 42.857 0.00 0.00 0.00 5.14
524 714 9.415544 GTGAGCTATGAAAAAGACAAAATCAAT 57.584 29.630 0.00 0.00 0.00 2.57
525 715 9.414295 TGAGCTATGAAAAAGACAAAATCAATG 57.586 29.630 0.00 0.00 0.00 2.82
552 742 6.372937 TGAATAGTGCCGAACAATAATGTCAA 59.627 34.615 0.00 0.00 39.40 3.18
561 751 8.693504 GCCGAACAATAATGTCAATATTCATTG 58.306 33.333 10.97 5.70 42.55 2.82
562 752 9.734620 CCGAACAATAATGTCAATATTCATTGT 57.265 29.630 10.97 3.86 41.96 2.71
585 791 7.531716 TGTTGAATTTTACACATCCCGTAATC 58.468 34.615 0.00 0.00 0.00 1.75
627 833 3.118738 ACGTGAGAATAGAACATCACCCC 60.119 47.826 0.00 0.00 39.06 4.95
641 847 1.002659 TCACCCCCTTAACATCACACG 59.997 52.381 0.00 0.00 0.00 4.49
682 888 4.729227 AACTTCCAAACGTGGTTTTCAT 57.271 36.364 0.00 0.00 46.11 2.57
696 902 6.337356 GTGGTTTTCATGGAGTTTTCTTTGA 58.663 36.000 0.00 0.00 0.00 2.69
700 906 7.347448 GTTTTCATGGAGTTTTCTTTGAATGC 58.653 34.615 0.00 0.00 0.00 3.56
703 909 5.535783 TCATGGAGTTTTCTTTGAATGCTGA 59.464 36.000 0.00 0.00 0.00 4.26
707 913 7.274447 TGGAGTTTTCTTTGAATGCTGATTTT 58.726 30.769 0.00 0.00 0.00 1.82
770 978 2.052104 CCGGCCCATTCCAAAGACC 61.052 63.158 0.00 0.00 0.00 3.85
776 984 2.235016 CCCATTCCAAAGACCGAAACA 58.765 47.619 0.00 0.00 0.00 2.83
784 992 1.640917 AAGACCGAAACAGGCTCCTA 58.359 50.000 0.00 0.00 33.69 2.94
787 995 1.192146 ACCGAAACAGGCTCCTAGCA 61.192 55.000 0.78 0.00 44.75 3.49
792 1000 0.818296 AACAGGCTCCTAGCAGTACG 59.182 55.000 0.78 0.00 44.75 3.67
795 1004 1.334243 CAGGCTCCTAGCAGTACGTAC 59.666 57.143 18.10 18.10 44.75 3.67
849 1063 2.840651 CCTTACCTTGTCACATCTCCCT 59.159 50.000 0.00 0.00 0.00 4.20
883 1097 0.934496 CGTCAAACCAAGTCTCGCAA 59.066 50.000 0.00 0.00 0.00 4.85
909 1123 1.830477 CTTGGCTAGCACTCTCTCCTT 59.170 52.381 18.24 0.00 0.00 3.36
984 1198 4.648307 GGACGAATTCTTCTTCCCCTACTA 59.352 45.833 11.32 0.00 41.02 1.82
1043 1257 4.379243 CGGGTTCGCTGGTGAGCT 62.379 66.667 0.00 0.00 43.77 4.09
1075 1289 5.013704 TCCTTGCTTGGATTACCTGTTCTAA 59.986 40.000 0.00 0.00 37.04 2.10
1080 1294 5.529060 GCTTGGATTACCTGTTCTAATCTGG 59.471 44.000 0.00 0.00 37.04 3.86
1098 1312 1.527380 GTCCGATCTCTCCTCCGCT 60.527 63.158 0.00 0.00 0.00 5.52
1133 1347 1.134670 CCAATCTCGGTTCCTGGACTC 60.135 57.143 0.00 0.00 0.00 3.36
1138 1352 2.342648 GGTTCCTGGACTCGCGTT 59.657 61.111 5.77 0.00 0.00 4.84
1145 1359 2.507324 GGACTCGCGTTCTCCAGC 60.507 66.667 5.77 0.00 0.00 4.85
1147 1361 2.992114 ACTCGCGTTCTCCAGCCT 60.992 61.111 5.77 0.00 0.00 4.58
1283 1497 4.666237 GTGCAGGATTGAAATCTTAGTGC 58.334 43.478 3.21 7.72 35.73 4.40
1311 1525 7.148000 GGTGTCTCGTACCCTAAATTACTAACT 60.148 40.741 0.00 0.00 31.89 2.24
1392 1606 4.467082 AGCAATGGCCAAGTTAATTGATGA 59.533 37.500 10.96 0.00 42.56 2.92
1393 1607 5.129815 AGCAATGGCCAAGTTAATTGATGAT 59.870 36.000 10.96 0.00 42.56 2.45
1394 1608 6.324512 AGCAATGGCCAAGTTAATTGATGATA 59.675 34.615 10.96 0.00 42.56 2.15
1649 1863 1.743394 CCATGTTAGTTCTTTCGCCCC 59.257 52.381 0.00 0.00 0.00 5.80
1654 1868 3.264947 GTTAGTTCTTTCGCCCCGTATT 58.735 45.455 0.00 0.00 0.00 1.89
1659 1873 1.551430 TCTTTCGCCCCGTATTCTCAA 59.449 47.619 0.00 0.00 0.00 3.02
1717 1931 5.403466 GGCTCAGTTTCATTTGACAATGTTC 59.597 40.000 0.00 0.00 40.78 3.18
1719 1933 6.713762 TCAGTTTCATTTGACAATGTTCCT 57.286 33.333 0.00 0.00 40.78 3.36
1724 1938 8.137437 AGTTTCATTTGACAATGTTCCTTACAG 58.863 33.333 0.00 0.00 40.83 2.74
1725 1939 7.581213 TTCATTTGACAATGTTCCTTACAGT 57.419 32.000 0.00 0.00 40.83 3.55
1761 1975 6.549364 TGTTGATGTAGGATGGAGTTTGTTTT 59.451 34.615 0.00 0.00 0.00 2.43
1814 2028 6.371548 GGTACAGATAAAGCATTGTGTTCTCA 59.628 38.462 0.00 0.00 0.00 3.27
1852 2066 6.825213 AGAACTATGCAGAATTTATCACAGCA 59.175 34.615 0.00 0.00 37.13 4.41
1955 2169 4.494091 ACAGAAGGATCATCCAACGAAT 57.506 40.909 6.42 0.00 39.61 3.34
1966 2180 1.165270 CCAACGAATGTCAAGGGGTC 58.835 55.000 0.00 0.00 0.00 4.46
2040 2254 3.874392 AAGTTTGCTCAATGTATGCCC 57.126 42.857 0.00 0.00 0.00 5.36
2041 2255 2.102578 AGTTTGCTCAATGTATGCCCC 58.897 47.619 0.00 0.00 0.00 5.80
2042 2256 1.136891 GTTTGCTCAATGTATGCCCCC 59.863 52.381 0.00 0.00 0.00 5.40
2486 3015 9.823098 CAACTGAGAAATATCTTTTGACTTCAG 57.177 33.333 0.00 0.00 35.54 3.02
2833 3362 7.446106 TCAACTTAATTGGCTTAGGATCCTA 57.554 36.000 18.00 18.00 38.98 2.94
3381 3910 7.069877 TGACCACAGTTACTACAGGTTTTAT 57.930 36.000 4.49 0.00 0.00 1.40
3585 4116 2.470821 CCCCGCAGAATCGTTTACTAG 58.529 52.381 0.00 0.00 0.00 2.57
3601 4132 7.041167 TCGTTTACTAGTCTTGCTACACAGTTA 60.041 37.037 0.00 0.00 0.00 2.24
3811 4357 9.855021 GATTTATTATTACATTGCCGCCTTTAT 57.145 29.630 0.00 0.00 0.00 1.40
4208 4754 4.808364 GCTAGACTTGGAATAGTGAGCTTG 59.192 45.833 0.00 0.00 33.77 4.01
4702 5273 4.873817 TCAATGCTGGAACACAAAATCAG 58.126 39.130 0.00 0.00 0.00 2.90
4705 5276 2.361757 TGCTGGAACACAAAATCAGTGG 59.638 45.455 0.00 0.00 41.21 4.00
4797 5369 4.236935 GTCAAATGCCATTGGTAACTGTG 58.763 43.478 4.26 0.00 37.61 3.66
5221 5796 1.076485 CTTGGCCCCCATGAAGAGG 60.076 63.158 0.00 0.00 31.53 3.69
5385 5975 4.272504 ACTTGTGTATCGTCCACTTTGTTG 59.727 41.667 0.00 0.00 33.92 3.33
5503 6093 3.741344 AGAGAAAAATTCACTCACCGTCG 59.259 43.478 0.00 0.00 33.69 5.12
5504 6094 2.223377 AGAAAAATTCACTCACCGTCGC 59.777 45.455 0.00 0.00 0.00 5.19
5514 6104 2.950309 ACTCACCGTCGCTGTATCTATT 59.050 45.455 0.00 0.00 0.00 1.73
5531 6121 2.368655 ATTGCGGAATTCACTTTGGC 57.631 45.000 7.93 1.37 0.00 4.52
5565 6155 4.935702 TCGATACCCTAAATACGGTTGTG 58.064 43.478 0.00 0.00 33.36 3.33
5566 6156 4.053295 CGATACCCTAAATACGGTTGTGG 58.947 47.826 0.00 0.00 33.36 4.17
5595 6185 5.707298 CACTTTGGTCATGGTACTTCTCAAT 59.293 40.000 0.00 0.00 0.00 2.57
5599 6189 5.741011 TGGTCATGGTACTTCTCAATAACC 58.259 41.667 0.00 0.00 0.00 2.85
5609 6199 9.761504 GGTACTTCTCAATAACCTAAATACTCC 57.238 37.037 0.00 0.00 0.00 3.85
5610 6200 9.761504 GTACTTCTCAATAACCTAAATACTCCC 57.238 37.037 0.00 0.00 0.00 4.30
5611 6201 8.625467 ACTTCTCAATAACCTAAATACTCCCT 57.375 34.615 0.00 0.00 0.00 4.20
5612 6202 8.706521 ACTTCTCAATAACCTAAATACTCCCTC 58.293 37.037 0.00 0.00 0.00 4.30
5613 6203 8.855804 TTCTCAATAACCTAAATACTCCCTCT 57.144 34.615 0.00 0.00 0.00 3.69
5614 6204 8.251383 TCTCAATAACCTAAATACTCCCTCTG 57.749 38.462 0.00 0.00 0.00 3.35
5615 6205 7.844779 TCTCAATAACCTAAATACTCCCTCTGT 59.155 37.037 0.00 0.00 0.00 3.41
5616 6206 8.019656 TCAATAACCTAAATACTCCCTCTGTC 57.980 38.462 0.00 0.00 0.00 3.51
5617 6207 6.997942 ATAACCTAAATACTCCCTCTGTCC 57.002 41.667 0.00 0.00 0.00 4.02
5618 6208 3.655384 ACCTAAATACTCCCTCTGTCCC 58.345 50.000 0.00 0.00 0.00 4.46
5619 6209 3.013648 ACCTAAATACTCCCTCTGTCCCA 59.986 47.826 0.00 0.00 0.00 4.37
5620 6210 4.037927 CCTAAATACTCCCTCTGTCCCAA 58.962 47.826 0.00 0.00 0.00 4.12
5621 6211 4.473559 CCTAAATACTCCCTCTGTCCCAAA 59.526 45.833 0.00 0.00 0.00 3.28
5622 6212 5.045140 CCTAAATACTCCCTCTGTCCCAAAA 60.045 44.000 0.00 0.00 0.00 2.44
5623 6213 5.536497 AAATACTCCCTCTGTCCCAAAAT 57.464 39.130 0.00 0.00 0.00 1.82
5624 6214 5.536497 AATACTCCCTCTGTCCCAAAATT 57.464 39.130 0.00 0.00 0.00 1.82
5625 6215 3.441500 ACTCCCTCTGTCCCAAAATTC 57.558 47.619 0.00 0.00 0.00 2.17
5626 6216 2.989571 ACTCCCTCTGTCCCAAAATTCT 59.010 45.455 0.00 0.00 0.00 2.40
5627 6217 3.399305 ACTCCCTCTGTCCCAAAATTCTT 59.601 43.478 0.00 0.00 0.00 2.52
5628 6218 3.760684 CTCCCTCTGTCCCAAAATTCTTG 59.239 47.826 0.00 0.00 0.00 3.02
5629 6219 3.140144 TCCCTCTGTCCCAAAATTCTTGT 59.860 43.478 0.00 0.00 0.00 3.16
5630 6220 3.507622 CCCTCTGTCCCAAAATTCTTGTC 59.492 47.826 0.00 0.00 0.00 3.18
5631 6221 4.401925 CCTCTGTCCCAAAATTCTTGTCT 58.598 43.478 0.00 0.00 0.00 3.41
5632 6222 4.829492 CCTCTGTCCCAAAATTCTTGTCTT 59.171 41.667 0.00 0.00 0.00 3.01
5633 6223 5.048434 CCTCTGTCCCAAAATTCTTGTCTTC 60.048 44.000 0.00 0.00 0.00 2.87
5634 6224 5.694995 TCTGTCCCAAAATTCTTGTCTTCT 58.305 37.500 0.00 0.00 0.00 2.85
5635 6225 6.129179 TCTGTCCCAAAATTCTTGTCTTCTT 58.871 36.000 0.00 0.00 0.00 2.52
5636 6226 6.039717 TCTGTCCCAAAATTCTTGTCTTCTTG 59.960 38.462 0.00 0.00 0.00 3.02
5637 6227 5.656416 TGTCCCAAAATTCTTGTCTTCTTGT 59.344 36.000 0.00 0.00 0.00 3.16
5638 6228 6.183360 TGTCCCAAAATTCTTGTCTTCTTGTC 60.183 38.462 0.00 0.00 0.00 3.18
5639 6229 6.039829 GTCCCAAAATTCTTGTCTTCTTGTCT 59.960 38.462 0.00 0.00 0.00 3.41
5640 6230 6.607198 TCCCAAAATTCTTGTCTTCTTGTCTT 59.393 34.615 0.00 0.00 0.00 3.01
5641 6231 7.777910 TCCCAAAATTCTTGTCTTCTTGTCTTA 59.222 33.333 0.00 0.00 0.00 2.10
5642 6232 8.078596 CCCAAAATTCTTGTCTTCTTGTCTTAG 58.921 37.037 0.00 0.00 0.00 2.18
5643 6233 8.840321 CCAAAATTCTTGTCTTCTTGTCTTAGA 58.160 33.333 0.00 0.00 0.00 2.10
5648 6238 8.964476 TTCTTGTCTTCTTGTCTTAGATTTGT 57.036 30.769 0.00 0.00 0.00 2.83
5649 6239 8.594881 TCTTGTCTTCTTGTCTTAGATTTGTC 57.405 34.615 0.00 0.00 0.00 3.18
5650 6240 8.424918 TCTTGTCTTCTTGTCTTAGATTTGTCT 58.575 33.333 0.00 0.00 0.00 3.41
5651 6241 9.698309 CTTGTCTTCTTGTCTTAGATTTGTCTA 57.302 33.333 0.00 0.00 0.00 2.59
5652 6242 9.698309 TTGTCTTCTTGTCTTAGATTTGTCTAG 57.302 33.333 0.00 0.00 0.00 2.43
5653 6243 9.078990 TGTCTTCTTGTCTTAGATTTGTCTAGA 57.921 33.333 0.00 0.00 0.00 2.43
5726 6316 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
5727 6317 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
5729 6319 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
5730 6320 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
5820 6410 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
5821 6411 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
5829 6419 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
5830 6420 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
5831 6421 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
5832 6422 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
5833 6423 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
5834 6424 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
5835 6425 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
5836 6426 3.072476 AGACAAGAATTTTGGGACGGAGA 59.928 43.478 0.00 0.00 0.00 3.71
5837 6427 3.412386 ACAAGAATTTTGGGACGGAGAG 58.588 45.455 0.00 0.00 0.00 3.20
5838 6428 3.072476 ACAAGAATTTTGGGACGGAGAGA 59.928 43.478 0.00 0.00 0.00 3.10
5839 6429 3.618690 AGAATTTTGGGACGGAGAGAG 57.381 47.619 0.00 0.00 0.00 3.20
5840 6430 2.907042 AGAATTTTGGGACGGAGAGAGT 59.093 45.455 0.00 0.00 0.00 3.24
5841 6431 4.094476 AGAATTTTGGGACGGAGAGAGTA 58.906 43.478 0.00 0.00 0.00 2.59
5842 6432 3.889520 ATTTTGGGACGGAGAGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
5900 6490 3.228453 TCACTTTAGTCACGGTCCTTCT 58.772 45.455 0.00 0.00 0.00 2.85
5957 6547 3.881688 GCATCTACAATCAGAGCCACAAT 59.118 43.478 0.00 0.00 0.00 2.71
5962 6552 0.322816 AATCAGAGCCACAATGCCGT 60.323 50.000 0.00 0.00 0.00 5.68
5969 6559 1.288752 CCACAATGCCGTCCCAAAC 59.711 57.895 0.00 0.00 0.00 2.93
6031 6621 2.124693 CCACAACCAGCCCAAACGT 61.125 57.895 0.00 0.00 0.00 3.99
6032 6622 1.358759 CACAACCAGCCCAAACGTC 59.641 57.895 0.00 0.00 0.00 4.34
6033 6623 1.101049 CACAACCAGCCCAAACGTCT 61.101 55.000 0.00 0.00 0.00 4.18
6034 6624 1.101049 ACAACCAGCCCAAACGTCTG 61.101 55.000 0.00 0.00 0.00 3.51
6041 6631 3.655481 CCAAACGTCTGGGCTGTC 58.345 61.111 0.00 0.00 32.32 3.51
6042 6632 1.966451 CCAAACGTCTGGGCTGTCC 60.966 63.158 0.00 0.00 32.32 4.02
6043 6633 2.030562 AAACGTCTGGGCTGTCCG 59.969 61.111 0.00 0.00 38.76 4.79
6044 6634 2.803817 AAACGTCTGGGCTGTCCGT 61.804 57.895 0.00 0.00 38.76 4.69
6045 6635 2.710724 AAACGTCTGGGCTGTCCGTC 62.711 60.000 0.00 0.00 38.76 4.79
6046 6636 3.680786 CGTCTGGGCTGTCCGTCA 61.681 66.667 0.00 0.00 38.76 4.35
6047 6637 2.741092 GTCTGGGCTGTCCGTCAA 59.259 61.111 0.00 0.00 38.76 3.18
6048 6638 1.668151 GTCTGGGCTGTCCGTCAAC 60.668 63.158 0.00 0.00 38.76 3.18
6049 6639 2.358737 CTGGGCTGTCCGTCAACC 60.359 66.667 0.00 0.00 38.76 3.77
6050 6640 2.847234 TGGGCTGTCCGTCAACCT 60.847 61.111 0.00 0.00 38.76 3.50
6051 6641 2.047179 GGGCTGTCCGTCAACCTC 60.047 66.667 0.00 0.00 33.20 3.85
6052 6642 2.047179 GGCTGTCCGTCAACCTCC 60.047 66.667 0.00 0.00 30.26 4.30
6053 6643 2.741092 GCTGTCCGTCAACCTCCA 59.259 61.111 0.00 0.00 0.00 3.86
6054 6644 1.296715 GCTGTCCGTCAACCTCCAT 59.703 57.895 0.00 0.00 0.00 3.41
6055 6645 0.535335 GCTGTCCGTCAACCTCCATA 59.465 55.000 0.00 0.00 0.00 2.74
6056 6646 1.739371 GCTGTCCGTCAACCTCCATAC 60.739 57.143 0.00 0.00 0.00 2.39
6057 6647 0.899720 TGTCCGTCAACCTCCATACC 59.100 55.000 0.00 0.00 0.00 2.73
6058 6648 0.177373 GTCCGTCAACCTCCATACCC 59.823 60.000 0.00 0.00 0.00 3.69
6059 6649 0.252330 TCCGTCAACCTCCATACCCA 60.252 55.000 0.00 0.00 0.00 4.51
6060 6650 0.616371 CCGTCAACCTCCATACCCAA 59.384 55.000 0.00 0.00 0.00 4.12
6061 6651 1.677820 CCGTCAACCTCCATACCCAAC 60.678 57.143 0.00 0.00 0.00 3.77
6062 6652 1.677820 CGTCAACCTCCATACCCAACC 60.678 57.143 0.00 0.00 0.00 3.77
6063 6653 1.633945 GTCAACCTCCATACCCAACCT 59.366 52.381 0.00 0.00 0.00 3.50
6064 6654 2.841881 GTCAACCTCCATACCCAACCTA 59.158 50.000 0.00 0.00 0.00 3.08
6065 6655 3.458487 GTCAACCTCCATACCCAACCTAT 59.542 47.826 0.00 0.00 0.00 2.57
6066 6656 4.657039 GTCAACCTCCATACCCAACCTATA 59.343 45.833 0.00 0.00 0.00 1.31
6067 6657 5.309806 GTCAACCTCCATACCCAACCTATAT 59.690 44.000 0.00 0.00 0.00 0.86
6068 6658 6.499350 GTCAACCTCCATACCCAACCTATATA 59.501 42.308 0.00 0.00 0.00 0.86
6069 6659 6.499350 TCAACCTCCATACCCAACCTATATAC 59.501 42.308 0.00 0.00 0.00 1.47
6070 6660 5.021458 ACCTCCATACCCAACCTATATACG 58.979 45.833 0.00 0.00 0.00 3.06
6071 6661 4.404715 CCTCCATACCCAACCTATATACGG 59.595 50.000 0.00 0.00 0.00 4.02
6072 6662 4.355549 TCCATACCCAACCTATATACGGG 58.644 47.826 0.00 0.00 43.02 5.28
6073 6663 4.045718 TCCATACCCAACCTATATACGGGA 59.954 45.833 0.00 0.00 39.44 5.14
6074 6664 4.161001 CCATACCCAACCTATATACGGGAC 59.839 50.000 0.00 0.00 39.44 4.46
6075 6665 3.333313 ACCCAACCTATATACGGGACA 57.667 47.619 0.00 0.00 39.44 4.02
6076 6666 3.236896 ACCCAACCTATATACGGGACAG 58.763 50.000 0.00 0.00 39.44 3.51
6077 6667 3.117016 ACCCAACCTATATACGGGACAGA 60.117 47.826 0.00 0.00 39.44 3.41
6078 6668 4.094476 CCCAACCTATATACGGGACAGAT 58.906 47.826 0.00 0.00 39.44 2.90
6079 6669 5.222400 ACCCAACCTATATACGGGACAGATA 60.222 44.000 0.00 0.00 39.44 1.98
6080 6670 5.897824 CCCAACCTATATACGGGACAGATAT 59.102 44.000 0.00 0.00 39.44 1.63
6081 6671 6.183360 CCCAACCTATATACGGGACAGATATG 60.183 46.154 0.00 0.00 39.44 1.78
6082 6672 6.183360 CCAACCTATATACGGGACAGATATGG 60.183 46.154 0.00 0.00 0.00 2.74
6083 6673 5.455872 ACCTATATACGGGACAGATATGGG 58.544 45.833 0.00 0.00 39.10 4.00
6084 6674 4.833380 CCTATATACGGGACAGATATGGGG 59.167 50.000 0.00 0.00 33.00 4.96
6085 6675 4.620086 ATATACGGGACAGATATGGGGA 57.380 45.455 0.00 0.00 0.00 4.81
6086 6676 2.304221 TACGGGACAGATATGGGGAG 57.696 55.000 0.00 0.00 0.00 4.30
6087 6677 0.471971 ACGGGACAGATATGGGGAGG 60.472 60.000 0.00 0.00 0.00 4.30
6088 6678 1.831652 CGGGACAGATATGGGGAGGC 61.832 65.000 0.00 0.00 0.00 4.70
6089 6679 1.492993 GGGACAGATATGGGGAGGCC 61.493 65.000 0.00 0.00 0.00 5.19
6090 6680 1.492993 GGACAGATATGGGGAGGCCC 61.493 65.000 0.00 0.00 44.51 5.80
6091 6681 1.831652 GACAGATATGGGGAGGCCCG 61.832 65.000 0.00 0.00 46.66 6.13
6092 6682 1.536418 CAGATATGGGGAGGCCCGA 60.536 63.158 0.00 0.00 46.66 5.14
6093 6683 1.127567 CAGATATGGGGAGGCCCGAA 61.128 60.000 0.00 0.00 46.66 4.30
6094 6684 1.128188 AGATATGGGGAGGCCCGAAC 61.128 60.000 0.00 0.00 46.66 3.95
6095 6685 1.385347 ATATGGGGAGGCCCGAACA 60.385 57.895 0.00 0.00 46.66 3.18
6096 6686 1.705997 ATATGGGGAGGCCCGAACAC 61.706 60.000 0.00 0.00 46.66 3.32
6097 6687 2.833151 TATGGGGAGGCCCGAACACT 62.833 60.000 0.00 0.00 46.66 3.55
6098 6688 2.686106 GGGGAGGCCCGAACACTA 60.686 66.667 0.00 0.00 46.66 2.74
6099 6689 2.582978 GGGAGGCCCGAACACTAC 59.417 66.667 0.00 0.00 32.13 2.73
6100 6690 2.582978 GGAGGCCCGAACACTACC 59.417 66.667 0.00 0.00 0.00 3.18
6101 6691 2.183555 GAGGCCCGAACACTACCG 59.816 66.667 0.00 0.00 0.00 4.02
6102 6692 4.078516 AGGCCCGAACACTACCGC 62.079 66.667 0.00 0.00 0.00 5.68
6103 6693 4.078516 GGCCCGAACACTACCGCT 62.079 66.667 0.00 0.00 0.00 5.52
6104 6694 2.713967 GGCCCGAACACTACCGCTA 61.714 63.158 0.00 0.00 0.00 4.26
6105 6695 1.517913 GCCCGAACACTACCGCTAC 60.518 63.158 0.00 0.00 0.00 3.58
6106 6696 1.226491 CCCGAACACTACCGCTACG 60.226 63.158 0.00 0.00 0.00 3.51
6107 6697 1.503542 CCGAACACTACCGCTACGT 59.496 57.895 0.00 0.00 0.00 3.57
6108 6698 0.109597 CCGAACACTACCGCTACGTT 60.110 55.000 0.00 0.00 0.00 3.99
6109 6699 0.979811 CGAACACTACCGCTACGTTG 59.020 55.000 0.00 0.00 0.00 4.10
6110 6700 1.343506 GAACACTACCGCTACGTTGG 58.656 55.000 0.00 0.00 0.00 3.77
6111 6701 0.961019 AACACTACCGCTACGTTGGA 59.039 50.000 8.01 0.00 0.00 3.53
6112 6702 0.242017 ACACTACCGCTACGTTGGAC 59.758 55.000 8.01 0.00 0.00 4.02
6113 6703 0.241749 CACTACCGCTACGTTGGACA 59.758 55.000 8.01 0.00 0.00 4.02
6114 6704 0.242017 ACTACCGCTACGTTGGACAC 59.758 55.000 8.01 0.00 0.00 3.67
6122 6712 4.728102 CGTTGGACACGCCCGCTA 62.728 66.667 0.00 0.00 43.37 4.26
6123 6713 2.125269 GTTGGACACGCCCGCTAT 60.125 61.111 0.00 0.00 34.97 2.97
6124 6714 2.125310 TTGGACACGCCCGCTATG 60.125 61.111 0.00 0.00 34.97 2.23
6125 6715 3.673956 TTGGACACGCCCGCTATGG 62.674 63.158 0.00 0.00 34.97 2.74
6133 6723 4.875713 CCCGCTATGGCCCACACC 62.876 72.222 0.00 0.00 35.87 4.16
6137 6727 4.875713 CTATGGCCCACACCGCCC 62.876 72.222 0.00 0.00 46.48 6.13
6152 6742 3.979497 CCCCCACAGGAACCCCAC 61.979 72.222 0.00 0.00 38.24 4.61
6153 6743 3.979497 CCCCACAGGAACCCCACC 61.979 72.222 0.00 0.00 38.24 4.61
6154 6744 3.979497 CCCACAGGAACCCCACCC 61.979 72.222 0.00 0.00 33.47 4.61
6155 6745 4.344865 CCACAGGAACCCCACCCG 62.345 72.222 0.00 0.00 33.88 5.28
6158 6748 4.047125 CAGGAACCCCACCCGCAT 62.047 66.667 0.00 0.00 33.88 4.73
6159 6749 3.728373 AGGAACCCCACCCGCATC 61.728 66.667 0.00 0.00 33.88 3.91
6160 6750 4.815108 GGAACCCCACCCGCATCC 62.815 72.222 0.00 0.00 0.00 3.51
6172 6762 3.719214 GCATCCGGCGAACCTTAG 58.281 61.111 9.30 0.00 0.00 2.18
6173 6763 1.153429 GCATCCGGCGAACCTTAGT 60.153 57.895 9.30 0.00 0.00 2.24
6174 6764 1.152383 GCATCCGGCGAACCTTAGTC 61.152 60.000 9.30 0.00 0.00 2.59
6175 6765 0.174845 CATCCGGCGAACCTTAGTCA 59.825 55.000 9.30 0.00 0.00 3.41
6176 6766 0.899720 ATCCGGCGAACCTTAGTCAA 59.100 50.000 9.30 0.00 0.00 3.18
6177 6767 0.245539 TCCGGCGAACCTTAGTCAAG 59.754 55.000 9.30 0.00 0.00 3.02
6178 6768 1.359459 CCGGCGAACCTTAGTCAAGC 61.359 60.000 9.30 0.00 0.00 4.01
6179 6769 1.359459 CGGCGAACCTTAGTCAAGCC 61.359 60.000 0.00 0.00 36.76 4.35
6180 6770 1.025113 GGCGAACCTTAGTCAAGCCC 61.025 60.000 0.00 0.00 35.13 5.19
6181 6771 0.036294 GCGAACCTTAGTCAAGCCCT 60.036 55.000 0.00 0.00 0.00 5.19
6182 6772 1.610886 GCGAACCTTAGTCAAGCCCTT 60.611 52.381 0.00 0.00 0.00 3.95
6183 6773 2.354403 GCGAACCTTAGTCAAGCCCTTA 60.354 50.000 0.00 0.00 0.00 2.69
6184 6774 3.522553 CGAACCTTAGTCAAGCCCTTAG 58.477 50.000 0.00 0.00 0.00 2.18
6185 6775 3.056035 CGAACCTTAGTCAAGCCCTTAGT 60.056 47.826 0.00 0.00 0.00 2.24
6186 6776 4.505808 GAACCTTAGTCAAGCCCTTAGTC 58.494 47.826 0.00 0.00 0.00 2.59
6187 6777 2.838813 ACCTTAGTCAAGCCCTTAGTCC 59.161 50.000 0.00 0.00 0.00 3.85
6188 6778 3.108376 CCTTAGTCAAGCCCTTAGTCCT 58.892 50.000 0.00 0.00 0.00 3.85
6189 6779 3.133183 CCTTAGTCAAGCCCTTAGTCCTC 59.867 52.174 0.00 0.00 0.00 3.71
6190 6780 2.632763 AGTCAAGCCCTTAGTCCTCT 57.367 50.000 0.00 0.00 0.00 3.69
6191 6781 2.462723 AGTCAAGCCCTTAGTCCTCTC 58.537 52.381 0.00 0.00 0.00 3.20
6192 6782 1.483004 GTCAAGCCCTTAGTCCTCTCC 59.517 57.143 0.00 0.00 0.00 3.71
6193 6783 0.461961 CAAGCCCTTAGTCCTCTCCG 59.538 60.000 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
179 352 8.945481 ATGTCTTTCATTTTTCATTTCACACA 57.055 26.923 0.00 0.00 32.08 3.72
182 355 9.393249 TCGTATGTCTTTCATTTTTCATTTCAC 57.607 29.630 0.00 0.00 37.91 3.18
183 356 9.958234 TTCGTATGTCTTTCATTTTTCATTTCA 57.042 25.926 0.00 0.00 37.91 2.69
331 506 2.112998 CATGATTTTGGGGCATGGAGT 58.887 47.619 0.00 0.00 36.61 3.85
342 517 8.552083 TCGTATGATATTCTCCCATGATTTTG 57.448 34.615 0.00 0.00 0.00 2.44
367 542 4.212636 CAGTTTCGACCGAATAGTGGTTTT 59.787 41.667 5.65 0.00 40.63 2.43
494 684 7.750229 TTTGTCTTTTTCATAGCTCACATCT 57.250 32.000 0.00 0.00 0.00 2.90
524 714 6.150307 ACATTATTGTTCGGCACTATTCAACA 59.850 34.615 0.00 0.00 29.55 3.33
525 715 6.551736 ACATTATTGTTCGGCACTATTCAAC 58.448 36.000 0.00 0.00 29.55 3.18
561 751 7.758495 AGATTACGGGATGTGTAAAATTCAAC 58.242 34.615 0.00 0.00 35.60 3.18
562 752 7.931578 AGATTACGGGATGTGTAAAATTCAA 57.068 32.000 0.00 0.00 35.60 2.69
571 761 8.889717 CAAGTAAAAATAGATTACGGGATGTGT 58.110 33.333 0.00 0.00 38.11 3.72
611 817 5.751586 TGTTAAGGGGGTGATGTTCTATTC 58.248 41.667 0.00 0.00 0.00 1.75
624 830 2.194201 AACGTGTGATGTTAAGGGGG 57.806 50.000 0.00 0.00 0.00 5.40
682 888 6.409524 AATCAGCATTCAAAGAAAACTCCA 57.590 33.333 0.00 0.00 0.00 3.86
696 902 7.917505 GGAGAATATCAAACGAAAATCAGCATT 59.082 33.333 0.00 0.00 0.00 3.56
700 906 9.624697 TTTTGGAGAATATCAAACGAAAATCAG 57.375 29.630 0.00 0.00 33.29 2.90
707 913 8.955388 TGATGATTTTTGGAGAATATCAAACGA 58.045 29.630 0.00 0.00 33.29 3.85
770 978 0.247736 ACTGCTAGGAGCCTGTTTCG 59.752 55.000 11.72 0.00 41.51 3.46
776 984 1.677942 GTACGTACTGCTAGGAGCCT 58.322 55.000 18.47 0.00 41.51 4.58
784 992 1.749634 GATCCAGTGGTACGTACTGCT 59.250 52.381 24.07 18.35 43.19 4.24
787 995 2.012673 GTCGATCCAGTGGTACGTACT 58.987 52.381 24.07 4.53 0.00 2.73
792 1000 1.436336 CGGGTCGATCCAGTGGTAC 59.564 63.158 16.61 3.73 38.11 3.34
795 1004 4.530857 GCCGGGTCGATCCAGTGG 62.531 72.222 16.61 9.24 38.11 4.00
826 1035 2.271800 GAGATGTGACAAGGTAAGGCG 58.728 52.381 0.00 0.00 0.00 5.52
827 1036 2.633488 GGAGATGTGACAAGGTAAGGC 58.367 52.381 0.00 0.00 0.00 4.35
830 1039 3.791320 AGAGGGAGATGTGACAAGGTAA 58.209 45.455 0.00 0.00 0.00 2.85
849 1063 3.891586 GACGACTGCCACGCGAAGA 62.892 63.158 15.93 0.00 0.00 2.87
895 1109 0.710588 TGGGGAAGGAGAGAGTGCTA 59.289 55.000 0.00 0.00 0.00 3.49
984 1198 1.906990 CCATCCCGGTAGATACGAGT 58.093 55.000 0.00 0.00 0.00 4.18
1043 1257 0.998928 TCCAAGCAAGGAAGGGCATA 59.001 50.000 0.00 0.00 33.93 3.14
1075 1289 1.203001 GGAGGAGAGATCGGACCAGAT 60.203 57.143 0.00 0.00 0.00 2.90
1080 1294 1.527380 AGCGGAGGAGAGATCGGAC 60.527 63.158 0.00 0.00 0.00 4.79
1133 1347 2.202676 GAGAGGCTGGAGAACGCG 60.203 66.667 3.53 3.53 0.00 6.01
1138 1352 0.043183 TGGATTGGAGAGGCTGGAGA 59.957 55.000 0.00 0.00 0.00 3.71
1145 1359 3.713764 ACTAACTGGATGGATTGGAGAGG 59.286 47.826 0.00 0.00 0.00 3.69
1147 1361 4.162320 GTCACTAACTGGATGGATTGGAGA 59.838 45.833 0.00 0.00 0.00 3.71
1270 1484 2.301870 AGACACCCGCACTAAGATTTCA 59.698 45.455 0.00 0.00 0.00 2.69
1311 1525 2.565391 TGTGGGAATCGAAACTGCTAGA 59.435 45.455 0.00 0.00 0.00 2.43
1415 1629 6.469410 ACATTCCCTTATCGTCAAACAGTTA 58.531 36.000 0.00 0.00 0.00 2.24
1649 1863 1.063174 GCTTGCCAGCTTGAGAATACG 59.937 52.381 1.78 0.00 43.51 3.06
1676 1890 1.352352 AGCCTTCTGTACACCTGCATT 59.648 47.619 0.00 0.00 0.00 3.56
1717 1931 5.527214 TCAACAATGTCAGTCAACTGTAAGG 59.473 40.000 9.82 1.33 44.12 2.69
1719 1933 6.542005 ACATCAACAATGTCAGTCAACTGTAA 59.458 34.615 9.82 0.81 45.78 2.41
1724 1938 5.700832 TCCTACATCAACAATGTCAGTCAAC 59.299 40.000 0.00 0.00 45.78 3.18
1725 1939 5.863965 TCCTACATCAACAATGTCAGTCAA 58.136 37.500 0.00 0.00 45.78 3.18
1761 1975 4.955450 ACATCATATGGCAGGCAGTTAAAA 59.045 37.500 1.89 0.00 33.60 1.52
1778 1992 7.564793 TGCTTTATCTGTACCAACTACATCAT 58.435 34.615 0.00 0.00 34.69 2.45
1801 2015 8.243426 TGAGGTTTATTTATGAGAACACAATGC 58.757 33.333 0.00 0.00 0.00 3.56
1814 2028 9.905713 TTCTGCATAGTTCTGAGGTTTATTTAT 57.094 29.630 0.00 0.00 0.00 1.40
1823 2037 7.496920 TGTGATAAATTCTGCATAGTTCTGAGG 59.503 37.037 0.00 0.00 0.00 3.86
1852 2066 8.299990 ACATAGTATAGAAGTTGAGCAGAAGT 57.700 34.615 0.00 0.00 0.00 3.01
1869 2083 8.646004 AGAACAGAAGCATACATGACATAGTAT 58.354 33.333 0.00 0.00 0.00 2.12
2049 2263 2.677228 GTGAGTGGGGATGGGGTG 59.323 66.667 0.00 0.00 0.00 4.61
2056 2270 0.415830 TGAGGTATGGTGAGTGGGGA 59.584 55.000 0.00 0.00 0.00 4.81
2057 2271 0.833287 CTGAGGTATGGTGAGTGGGG 59.167 60.000 0.00 0.00 0.00 4.96
2058 2272 1.482593 GACTGAGGTATGGTGAGTGGG 59.517 57.143 0.00 0.00 0.00 4.61
2059 2273 2.179427 TGACTGAGGTATGGTGAGTGG 58.821 52.381 0.00 0.00 0.00 4.00
2404 2928 5.394115 CCACAGGCAGAATTATGTAAAACCC 60.394 44.000 1.46 0.00 0.00 4.11
2486 3015 9.750125 AAACCAGAATTCATTTAGTTGAAGAAC 57.250 29.630 8.44 0.00 38.90 3.01
3264 3793 8.976986 ATATCAGCTCAAAACAGAATTGAAAC 57.023 30.769 0.00 0.00 36.43 2.78
3381 3910 4.598373 ACTACTACCACCCAAACAATACCA 59.402 41.667 0.00 0.00 0.00 3.25
3541 4072 2.345760 GCAATGGAGGGCACACAGG 61.346 63.158 0.00 0.00 0.00 4.00
3585 4116 6.373186 AAAAACCTAACTGTGTAGCAAGAC 57.627 37.500 0.00 0.00 0.00 3.01
3811 4357 8.364142 CCCTGTTGGATGACTTATTTTGTAAAA 58.636 33.333 0.00 0.00 35.39 1.52
4071 4617 0.038744 CTTCCCATGGAACTGGCAGT 59.961 55.000 15.88 15.88 36.71 4.40
4072 4618 0.038744 ACTTCCCATGGAACTGGCAG 59.961 55.000 15.22 14.16 36.71 4.85
4208 4754 4.400567 AGGCTCATTATTCTCCTGCAAAAC 59.599 41.667 0.00 0.00 0.00 2.43
4276 4822 6.831353 TGAAAATAACTTGGTCTGAAGGTTGA 59.169 34.615 0.00 0.00 0.00 3.18
4384 4940 7.554476 CCCCCAAAACTATTTTTCTTTTGACAA 59.446 33.333 4.12 0.00 37.14 3.18
4386 4942 7.276658 TCCCCCAAAACTATTTTTCTTTTGAC 58.723 34.615 4.12 0.00 37.14 3.18
4387 4943 7.126573 ACTCCCCCAAAACTATTTTTCTTTTGA 59.873 33.333 4.12 0.00 37.14 2.69
4388 4944 7.279615 ACTCCCCCAAAACTATTTTTCTTTTG 58.720 34.615 0.00 0.00 32.27 2.44
4391 4947 6.613679 TCAACTCCCCCAAAACTATTTTTCTT 59.386 34.615 0.00 0.00 32.27 2.52
4393 4949 6.413783 TCAACTCCCCCAAAACTATTTTTC 57.586 37.500 0.00 0.00 32.27 2.29
4560 5119 5.665459 ACAGTGCAGATAGACCAGTTATTC 58.335 41.667 0.00 0.00 0.00 1.75
4797 5369 8.607459 CAGTCATCAAATATACAAGGAGACAAC 58.393 37.037 0.00 0.00 0.00 3.32
5221 5796 4.685924 CCAAGGGATGTAAAACATGATGC 58.314 43.478 0.00 0.00 39.27 3.91
5385 5975 5.755861 GGATTACTCTAGTGGAATCAACAGC 59.244 44.000 24.36 8.83 31.25 4.40
5503 6093 4.752101 AGTGAATTCCGCAATAGATACAGC 59.248 41.667 2.27 0.00 0.00 4.40
5504 6094 6.851222 AAGTGAATTCCGCAATAGATACAG 57.149 37.500 2.27 0.00 0.00 2.74
5514 6104 0.886938 TCGCCAAAGTGAATTCCGCA 60.887 50.000 2.27 0.00 0.00 5.69
5531 6121 0.307146 GGTATCGAGAAGGACCGTCG 59.693 60.000 1.47 4.84 34.98 5.12
5565 6155 5.010282 AGTACCATGACCAAAGTGAATTCC 58.990 41.667 2.27 0.00 0.00 3.01
5566 6156 6.431234 AGAAGTACCATGACCAAAGTGAATTC 59.569 38.462 0.00 0.00 0.00 2.17
5595 6185 5.214293 GGGACAGAGGGAGTATTTAGGTTA 58.786 45.833 0.00 0.00 0.00 2.85
5599 6189 5.693769 TTTGGGACAGAGGGAGTATTTAG 57.306 43.478 0.00 0.00 42.39 1.85
5607 6197 3.140144 ACAAGAATTTTGGGACAGAGGGA 59.860 43.478 5.68 0.00 42.39 4.20
5608 6198 3.500343 ACAAGAATTTTGGGACAGAGGG 58.500 45.455 5.68 0.00 42.39 4.30
5609 6199 4.401925 AGACAAGAATTTTGGGACAGAGG 58.598 43.478 5.68 0.00 42.39 3.69
5610 6200 5.767168 AGAAGACAAGAATTTTGGGACAGAG 59.233 40.000 5.68 0.00 42.39 3.35
5611 6201 5.694995 AGAAGACAAGAATTTTGGGACAGA 58.305 37.500 5.68 0.00 42.39 3.41
5612 6202 6.183360 ACAAGAAGACAAGAATTTTGGGACAG 60.183 38.462 5.68 0.00 42.39 3.51
5613 6203 5.656416 ACAAGAAGACAAGAATTTTGGGACA 59.344 36.000 5.68 0.00 0.00 4.02
5614 6204 6.039829 AGACAAGAAGACAAGAATTTTGGGAC 59.960 38.462 5.68 0.00 0.00 4.46
5615 6205 6.129179 AGACAAGAAGACAAGAATTTTGGGA 58.871 36.000 5.68 0.00 0.00 4.37
5616 6206 6.396829 AGACAAGAAGACAAGAATTTTGGG 57.603 37.500 5.68 0.00 0.00 4.12
5617 6207 8.840321 TCTAAGACAAGAAGACAAGAATTTTGG 58.160 33.333 5.68 0.00 0.00 3.28
5622 6212 9.566432 ACAAATCTAAGACAAGAAGACAAGAAT 57.434 29.630 0.00 0.00 0.00 2.40
5623 6213 8.964476 ACAAATCTAAGACAAGAAGACAAGAA 57.036 30.769 0.00 0.00 0.00 2.52
5624 6214 8.424918 AGACAAATCTAAGACAAGAAGACAAGA 58.575 33.333 0.00 0.00 31.46 3.02
5625 6215 8.600449 AGACAAATCTAAGACAAGAAGACAAG 57.400 34.615 0.00 0.00 31.46 3.16
5626 6216 9.698309 CTAGACAAATCTAAGACAAGAAGACAA 57.302 33.333 0.00 0.00 36.98 3.18
5627 6217 9.078990 TCTAGACAAATCTAAGACAAGAAGACA 57.921 33.333 0.00 0.00 36.98 3.41
5700 6290 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
5701 6291 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
5703 6293 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
5704 6294 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
5794 6384 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
5795 6385 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
5803 6393 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
5804 6394 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
5805 6395 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
5806 6396 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
5807 6397 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
5808 6398 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
5809 6399 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
5810 6400 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
5811 6401 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
5812 6402 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
5813 6403 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
5814 6404 3.072476 TCTCCGTCCCAAAATTCTTGTCT 59.928 43.478 0.00 0.00 0.00 3.41
5815 6405 3.408634 TCTCCGTCCCAAAATTCTTGTC 58.591 45.455 0.00 0.00 0.00 3.18
5816 6406 3.072476 TCTCTCCGTCCCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
5817 6407 3.674997 TCTCTCCGTCCCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
5818 6408 3.328050 ACTCTCTCCGTCCCAAAATTCTT 59.672 43.478 0.00 0.00 0.00 2.52
5819 6409 2.907042 ACTCTCTCCGTCCCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
5820 6410 3.336138 ACTCTCTCCGTCCCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
5821 6411 3.055312 GGTACTCTCTCCGTCCCAAAATT 60.055 47.826 0.00 0.00 0.00 1.82
5822 6412 2.500504 GGTACTCTCTCCGTCCCAAAAT 59.499 50.000 0.00 0.00 0.00 1.82
5823 6413 1.897802 GGTACTCTCTCCGTCCCAAAA 59.102 52.381 0.00 0.00 0.00 2.44
5824 6414 1.076677 AGGTACTCTCTCCGTCCCAAA 59.923 52.381 0.00 0.00 0.00 3.28
5825 6415 0.702902 AGGTACTCTCTCCGTCCCAA 59.297 55.000 0.00 0.00 0.00 4.12
5826 6416 1.588239 TAGGTACTCTCTCCGTCCCA 58.412 55.000 0.00 0.00 41.75 4.37
5827 6417 2.725221 TTAGGTACTCTCTCCGTCCC 57.275 55.000 0.00 0.00 41.75 4.46
5828 6418 4.213059 CGTATTTAGGTACTCTCTCCGTCC 59.787 50.000 0.00 0.00 41.75 4.79
5829 6419 4.213059 CCGTATTTAGGTACTCTCTCCGTC 59.787 50.000 0.00 0.00 41.75 4.79
5830 6420 4.133078 CCGTATTTAGGTACTCTCTCCGT 58.867 47.826 0.00 0.00 41.75 4.69
5831 6421 4.133078 ACCGTATTTAGGTACTCTCTCCG 58.867 47.826 0.00 0.00 40.80 4.63
5832 6422 5.128919 TGACCGTATTTAGGTACTCTCTCC 58.871 45.833 0.00 0.00 43.01 3.71
5833 6423 6.485984 TGATGACCGTATTTAGGTACTCTCTC 59.514 42.308 0.00 0.00 43.01 3.20
5834 6424 6.363065 TGATGACCGTATTTAGGTACTCTCT 58.637 40.000 0.00 0.00 43.01 3.10
5835 6425 6.630444 TGATGACCGTATTTAGGTACTCTC 57.370 41.667 0.00 0.00 43.01 3.20
5836 6426 6.040616 CCTTGATGACCGTATTTAGGTACTCT 59.959 42.308 0.00 0.00 43.01 3.24
5837 6427 6.183360 ACCTTGATGACCGTATTTAGGTACTC 60.183 42.308 0.00 0.00 43.01 2.59
5838 6428 5.659971 ACCTTGATGACCGTATTTAGGTACT 59.340 40.000 0.00 0.00 43.01 2.73
5839 6429 5.751990 CACCTTGATGACCGTATTTAGGTAC 59.248 44.000 0.00 0.00 43.01 3.34
5840 6430 5.422970 ACACCTTGATGACCGTATTTAGGTA 59.577 40.000 0.00 0.00 43.01 3.08
5841 6431 4.224370 ACACCTTGATGACCGTATTTAGGT 59.776 41.667 0.00 0.00 46.16 3.08
5842 6432 4.766375 ACACCTTGATGACCGTATTTAGG 58.234 43.478 0.00 0.00 0.00 2.69
5925 6515 7.410120 TCTGATTGTAGATGCTCTAAGACAA 57.590 36.000 0.00 0.00 30.07 3.18
5942 6532 0.099968 CGGCATTGTGGCTCTGATTG 59.900 55.000 2.03 0.00 41.25 2.67
5969 6559 3.746949 GATCCAGGCAGCCCAGACG 62.747 68.421 8.22 0.00 0.00 4.18
6015 6605 1.101049 CAGACGTTTGGGCTGGTTGT 61.101 55.000 0.00 0.00 0.00 3.32
6031 6621 2.741092 GTTGACGGACAGCCCAGA 59.259 61.111 0.00 0.00 34.14 3.86
6032 6622 2.358737 GGTTGACGGACAGCCCAG 60.359 66.667 2.16 0.00 42.79 4.45
6036 6626 0.535335 TATGGAGGTTGACGGACAGC 59.465 55.000 0.00 0.00 0.00 4.40
6037 6627 1.134788 GGTATGGAGGTTGACGGACAG 60.135 57.143 0.00 0.00 0.00 3.51
6038 6628 0.899720 GGTATGGAGGTTGACGGACA 59.100 55.000 0.00 0.00 0.00 4.02
6039 6629 0.177373 GGGTATGGAGGTTGACGGAC 59.823 60.000 0.00 0.00 0.00 4.79
6040 6630 0.252330 TGGGTATGGAGGTTGACGGA 60.252 55.000 0.00 0.00 0.00 4.69
6041 6631 0.616371 TTGGGTATGGAGGTTGACGG 59.384 55.000 0.00 0.00 0.00 4.79
6042 6632 1.677820 GGTTGGGTATGGAGGTTGACG 60.678 57.143 0.00 0.00 0.00 4.35
6043 6633 1.633945 AGGTTGGGTATGGAGGTTGAC 59.366 52.381 0.00 0.00 0.00 3.18
6044 6634 2.053747 AGGTTGGGTATGGAGGTTGA 57.946 50.000 0.00 0.00 0.00 3.18
6045 6635 5.843019 ATATAGGTTGGGTATGGAGGTTG 57.157 43.478 0.00 0.00 0.00 3.77
6046 6636 5.482878 CGTATATAGGTTGGGTATGGAGGTT 59.517 44.000 0.00 0.00 0.00 3.50
6047 6637 5.021458 CGTATATAGGTTGGGTATGGAGGT 58.979 45.833 0.00 0.00 0.00 3.85
6048 6638 4.404715 CCGTATATAGGTTGGGTATGGAGG 59.595 50.000 2.00 0.00 0.00 4.30
6049 6639 4.404715 CCCGTATATAGGTTGGGTATGGAG 59.595 50.000 2.00 0.00 35.05 3.86
6050 6640 4.045718 TCCCGTATATAGGTTGGGTATGGA 59.954 45.833 8.42 0.91 40.86 3.41
6051 6641 4.161001 GTCCCGTATATAGGTTGGGTATGG 59.839 50.000 8.42 0.00 40.86 2.74
6052 6642 4.773674 TGTCCCGTATATAGGTTGGGTATG 59.226 45.833 8.42 0.00 40.86 2.39
6053 6643 5.014534 TGTCCCGTATATAGGTTGGGTAT 57.985 43.478 8.42 0.00 40.86 2.73
6054 6644 4.106179 TCTGTCCCGTATATAGGTTGGGTA 59.894 45.833 8.42 1.63 40.86 3.69
6055 6645 3.117016 TCTGTCCCGTATATAGGTTGGGT 60.117 47.826 8.42 0.00 40.86 4.51
6056 6646 3.503365 TCTGTCCCGTATATAGGTTGGG 58.497 50.000 2.00 3.00 41.43 4.12
6057 6647 6.183360 CCATATCTGTCCCGTATATAGGTTGG 60.183 46.154 2.00 0.00 0.00 3.77
6058 6648 6.183360 CCCATATCTGTCCCGTATATAGGTTG 60.183 46.154 2.00 0.00 0.00 3.77
6059 6649 5.897824 CCCATATCTGTCCCGTATATAGGTT 59.102 44.000 2.00 0.00 0.00 3.50
6060 6650 5.455872 CCCATATCTGTCCCGTATATAGGT 58.544 45.833 2.00 0.00 0.00 3.08
6061 6651 4.833380 CCCCATATCTGTCCCGTATATAGG 59.167 50.000 0.00 0.00 0.00 2.57
6062 6652 5.702266 TCCCCATATCTGTCCCGTATATAG 58.298 45.833 0.00 0.00 0.00 1.31
6063 6653 5.399842 CCTCCCCATATCTGTCCCGTATATA 60.400 48.000 0.00 0.00 0.00 0.86
6064 6654 4.547671 CTCCCCATATCTGTCCCGTATAT 58.452 47.826 0.00 0.00 0.00 0.86
6065 6655 3.309629 CCTCCCCATATCTGTCCCGTATA 60.310 52.174 0.00 0.00 0.00 1.47
6066 6656 2.559931 CCTCCCCATATCTGTCCCGTAT 60.560 54.545 0.00 0.00 0.00 3.06
6067 6657 1.203137 CCTCCCCATATCTGTCCCGTA 60.203 57.143 0.00 0.00 0.00 4.02
6068 6658 0.471971 CCTCCCCATATCTGTCCCGT 60.472 60.000 0.00 0.00 0.00 5.28
6069 6659 1.831652 GCCTCCCCATATCTGTCCCG 61.832 65.000 0.00 0.00 0.00 5.14
6070 6660 1.492993 GGCCTCCCCATATCTGTCCC 61.493 65.000 0.00 0.00 0.00 4.46
6071 6661 2.070639 GGCCTCCCCATATCTGTCC 58.929 63.158 0.00 0.00 0.00 4.02
6082 6672 2.582978 GTAGTGTTCGGGCCTCCC 59.417 66.667 0.84 0.00 41.09 4.30
6083 6673 2.582978 GGTAGTGTTCGGGCCTCC 59.417 66.667 0.84 0.00 0.00 4.30
6084 6674 2.183555 CGGTAGTGTTCGGGCCTC 59.816 66.667 0.84 0.00 0.00 4.70
6085 6675 4.078516 GCGGTAGTGTTCGGGCCT 62.079 66.667 0.84 0.00 0.00 5.19
6086 6676 2.713967 TAGCGGTAGTGTTCGGGCC 61.714 63.158 0.00 0.00 0.00 5.80
6087 6677 1.517913 GTAGCGGTAGTGTTCGGGC 60.518 63.158 0.00 0.00 0.00 6.13
6088 6678 1.226491 CGTAGCGGTAGTGTTCGGG 60.226 63.158 0.00 0.00 0.00 5.14
6089 6679 0.109597 AACGTAGCGGTAGTGTTCGG 60.110 55.000 0.00 0.00 0.00 4.30
6090 6680 0.979811 CAACGTAGCGGTAGTGTTCG 59.020 55.000 8.71 4.93 0.00 3.95
6091 6681 1.068333 TCCAACGTAGCGGTAGTGTTC 60.068 52.381 8.71 0.00 0.00 3.18
6092 6682 0.961019 TCCAACGTAGCGGTAGTGTT 59.039 50.000 0.00 0.11 0.00 3.32
6093 6683 0.242017 GTCCAACGTAGCGGTAGTGT 59.758 55.000 0.00 0.00 0.00 3.55
6094 6684 0.241749 TGTCCAACGTAGCGGTAGTG 59.758 55.000 0.00 0.00 0.00 2.74
6095 6685 0.242017 GTGTCCAACGTAGCGGTAGT 59.758 55.000 0.00 0.00 0.00 2.73
6096 6686 3.025866 GTGTCCAACGTAGCGGTAG 57.974 57.895 0.00 0.00 0.00 3.18
6106 6696 2.125269 ATAGCGGGCGTGTCCAAC 60.125 61.111 0.00 0.00 36.21 3.77
6107 6697 2.125310 CATAGCGGGCGTGTCCAA 60.125 61.111 0.00 0.00 36.21 3.53
6108 6698 4.155733 CCATAGCGGGCGTGTCCA 62.156 66.667 0.00 0.00 36.21 4.02
6116 6706 4.875713 GGTGTGGGCCATAGCGGG 62.876 72.222 16.75 0.00 41.24 6.13
6135 6725 3.979497 GTGGGGTTCCTGTGGGGG 61.979 72.222 0.00 0.00 35.33 5.40
6136 6726 3.979497 GGTGGGGTTCCTGTGGGG 61.979 72.222 0.00 0.00 0.00 4.96
6137 6727 3.979497 GGGTGGGGTTCCTGTGGG 61.979 72.222 0.00 0.00 0.00 4.61
6138 6728 4.344865 CGGGTGGGGTTCCTGTGG 62.345 72.222 0.00 0.00 0.00 4.17
6141 6731 3.995506 GATGCGGGTGGGGTTCCTG 62.996 68.421 0.00 0.00 34.70 3.86
6142 6732 3.728373 GATGCGGGTGGGGTTCCT 61.728 66.667 0.00 0.00 0.00 3.36
6143 6733 4.815108 GGATGCGGGTGGGGTTCC 62.815 72.222 0.00 0.00 0.00 3.62
6155 6745 1.152383 GACTAAGGTTCGCCGGATGC 61.152 60.000 5.05 0.00 43.66 3.91
6156 6746 0.174845 TGACTAAGGTTCGCCGGATG 59.825 55.000 5.05 0.00 43.66 3.51
6157 6747 0.899720 TTGACTAAGGTTCGCCGGAT 59.100 50.000 5.05 0.00 43.66 4.18
6158 6748 0.245539 CTTGACTAAGGTTCGCCGGA 59.754 55.000 5.05 0.00 43.66 5.14
6159 6749 1.359459 GCTTGACTAAGGTTCGCCGG 61.359 60.000 0.00 0.00 43.66 6.13
6160 6750 1.359459 GGCTTGACTAAGGTTCGCCG 61.359 60.000 0.00 0.00 43.66 6.46
6161 6751 1.025113 GGGCTTGACTAAGGTTCGCC 61.025 60.000 0.00 0.00 34.40 5.54
6162 6752 0.036294 AGGGCTTGACTAAGGTTCGC 60.036 55.000 0.00 0.00 34.40 4.70
6163 6753 2.474410 AAGGGCTTGACTAAGGTTCG 57.526 50.000 0.00 0.00 34.40 3.95
6164 6754 4.505808 GACTAAGGGCTTGACTAAGGTTC 58.494 47.826 0.00 0.00 34.40 3.62
6165 6755 3.263681 GGACTAAGGGCTTGACTAAGGTT 59.736 47.826 0.00 0.00 34.40 3.50
6166 6756 2.838813 GGACTAAGGGCTTGACTAAGGT 59.161 50.000 0.00 0.00 34.40 3.50
6167 6757 3.108376 AGGACTAAGGGCTTGACTAAGG 58.892 50.000 0.00 0.00 34.40 2.69
6168 6758 4.027437 AGAGGACTAAGGGCTTGACTAAG 58.973 47.826 0.00 0.00 36.97 2.18
6169 6759 4.024670 GAGAGGACTAAGGGCTTGACTAA 58.975 47.826 0.00 0.00 0.00 2.24
6170 6760 3.627747 GGAGAGGACTAAGGGCTTGACTA 60.628 52.174 0.00 0.00 0.00 2.59
6171 6761 2.462723 GAGAGGACTAAGGGCTTGACT 58.537 52.381 0.00 0.00 0.00 3.41
6172 6762 1.483004 GGAGAGGACTAAGGGCTTGAC 59.517 57.143 0.00 0.00 0.00 3.18
6173 6763 1.867363 GGAGAGGACTAAGGGCTTGA 58.133 55.000 0.00 0.00 0.00 3.02
6174 6764 0.461961 CGGAGAGGACTAAGGGCTTG 59.538 60.000 0.00 0.00 0.00 4.01
6175 6765 2.903404 CGGAGAGGACTAAGGGCTT 58.097 57.895 0.00 0.00 0.00 4.35
6176 6766 4.688770 CGGAGAGGACTAAGGGCT 57.311 61.111 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.