Multiple sequence alignment - TraesCS7B01G164100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G164100 chr7B 100.000 2468 0 0 1 2468 226440315 226442782 0.000000e+00 4558
1 TraesCS7B01G164100 chr7B 83.370 457 57 8 2 442 399873577 399873124 2.960000e-109 405
2 TraesCS7B01G164100 chr7B 82.781 453 59 11 4 442 140655039 140655486 1.070000e-103 387
3 TraesCS7B01G164100 chr7D 89.552 1273 68 28 562 1800 249484918 249486159 0.000000e+00 1554
4 TraesCS7B01G164100 chr7D 91.826 575 36 8 1899 2468 249488966 249489534 0.000000e+00 791
5 TraesCS7B01G164100 chr7D 88.964 444 46 3 1 442 249441269 249441711 1.670000e-151 545
6 TraesCS7B01G164100 chr7D 84.768 453 56 7 2 442 523554786 523554335 2.250000e-120 442
7 TraesCS7B01G164100 chr7D 95.200 125 6 0 1076 1200 249485517 249485641 5.380000e-47 198
8 TraesCS7B01G164100 chr7D 86.667 165 19 2 1143 1307 249485413 249485574 1.950000e-41 180
9 TraesCS7B01G164100 chr7A 90.442 837 47 13 715 1529 271724375 271723550 0.000000e+00 1072
10 TraesCS7B01G164100 chr7A 84.222 938 85 22 1545 2468 271723302 271722414 0.000000e+00 854
11 TraesCS7B01G164100 chr7A 84.564 447 56 4 2 435 37830304 37830750 4.880000e-117 431
12 TraesCS7B01G164100 chr7A 83.854 384 50 9 71 442 646700559 646700176 3.020000e-94 355
13 TraesCS7B01G164100 chr7A 88.667 150 12 3 1143 1291 271724013 271723868 7.010000e-41 178
14 TraesCS7B01G164100 chr7A 83.432 169 17 5 1059 1223 271723929 271723768 1.980000e-31 147
15 TraesCS7B01G164100 chr2B 84.768 453 51 10 2 442 592549555 592550001 2.910000e-119 438
16 TraesCS7B01G164100 chr2B 91.667 132 8 3 1056 1186 770071749 770071620 1.950000e-41 180
17 TraesCS7B01G164100 chr5D 84.375 448 54 7 4 439 188089179 188088736 2.270000e-115 425
18 TraesCS7B01G164100 chr3D 84.954 432 49 5 4 419 395044721 395045152 8.160000e-115 424
19 TraesCS7B01G164100 chr3D 82.965 452 62 8 1 440 602234017 602234465 6.400000e-106 394
20 TraesCS7B01G164100 chr1B 84.035 451 60 6 4 442 322477664 322478114 8.160000e-115 424
21 TraesCS7B01G164100 chr6B 83.885 453 58 12 2 442 706799578 706799129 3.800000e-113 418
22 TraesCS7B01G164100 chr2D 85.427 398 46 7 1163 1555 627823810 627823420 1.060000e-108 403
23 TraesCS7B01G164100 chr2D 83.040 454 63 9 2 442 403382878 403383330 1.370000e-107 399
24 TraesCS7B01G164100 chr2D 89.091 165 14 3 5 168 101933452 101933291 4.160000e-48 202
25 TraesCS7B01G164100 chr2D 87.500 128 11 5 1060 1186 627823826 627823703 2.560000e-30 143
26 TraesCS7B01G164100 chr1D 83.002 453 62 9 2 442 326224127 326223678 1.780000e-106 396
27 TraesCS7B01G164100 chr1D 82.781 453 64 5 3 442 479599174 479598723 2.300000e-105 392
28 TraesCS7B01G164100 chr1A 82.522 452 56 8 2 442 71077781 71077342 2.320000e-100 375
29 TraesCS7B01G164100 chr2A 87.591 137 11 4 1050 1186 758280611 758280481 1.180000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G164100 chr7B 226440315 226442782 2467 False 4558.00 4558 100.00000 1 2468 1 chr7B.!!$F2 2467
1 TraesCS7B01G164100 chr7D 249484918 249489534 4616 False 680.75 1554 90.81125 562 2468 4 chr7D.!!$F2 1906
2 TraesCS7B01G164100 chr7A 271722414 271724375 1961 True 562.75 1072 86.69075 715 2468 4 chr7A.!!$R2 1753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
314 315 0.032615 TGGGGCATCCGGCTTTAAAT 60.033 50.0 0.0 0.0 44.01 1.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2136 5164 0.250252 TCATCCGACAGCAGCAACAA 60.25 50.0 0.0 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.597340 ATGGGGGCATCGTCTTGG 59.403 61.111 0.00 0.00 0.00 3.61
18 19 2.000701 ATGGGGGCATCGTCTTGGA 61.001 57.895 0.00 0.00 0.00 3.53
20 21 2.514824 GGGGCATCGTCTTGGAGC 60.515 66.667 0.00 0.00 0.00 4.70
21 22 2.268920 GGGCATCGTCTTGGAGCA 59.731 61.111 0.00 0.00 0.00 4.26
22 23 1.377202 GGGCATCGTCTTGGAGCAA 60.377 57.895 0.00 0.00 0.00 3.91
23 24 1.372087 GGGCATCGTCTTGGAGCAAG 61.372 60.000 0.00 0.00 42.25 4.01
24 25 0.674895 GGCATCGTCTTGGAGCAAGT 60.675 55.000 0.00 0.00 41.66 3.16
25 26 0.445436 GCATCGTCTTGGAGCAAGTG 59.555 55.000 0.00 0.00 41.66 3.16
26 27 0.445436 CATCGTCTTGGAGCAAGTGC 59.555 55.000 0.00 0.00 41.66 4.40
36 37 3.060615 GCAAGTGCTGGCTGGAGG 61.061 66.667 0.00 0.00 38.21 4.30
37 38 2.360852 CAAGTGCTGGCTGGAGGG 60.361 66.667 0.00 0.00 0.00 4.30
38 39 3.655211 AAGTGCTGGCTGGAGGGG 61.655 66.667 0.00 0.00 0.00 4.79
39 40 4.664267 AGTGCTGGCTGGAGGGGA 62.664 66.667 0.00 0.00 0.00 4.81
40 41 4.416738 GTGCTGGCTGGAGGGGAC 62.417 72.222 0.00 0.00 0.00 4.46
41 42 4.980592 TGCTGGCTGGAGGGGACA 62.981 66.667 0.00 0.00 0.00 4.02
42 43 3.650950 GCTGGCTGGAGGGGACAA 61.651 66.667 0.00 0.00 0.00 3.18
43 44 2.673523 CTGGCTGGAGGGGACAAG 59.326 66.667 0.00 0.00 0.00 3.16
44 45 1.920325 CTGGCTGGAGGGGACAAGA 60.920 63.158 0.00 0.00 0.00 3.02
45 46 1.229951 TGGCTGGAGGGGACAAGAT 60.230 57.895 0.00 0.00 0.00 2.40
46 47 1.225704 GGCTGGAGGGGACAAGATG 59.774 63.158 0.00 0.00 0.00 2.90
47 48 1.274703 GGCTGGAGGGGACAAGATGA 61.275 60.000 0.00 0.00 0.00 2.92
48 49 0.179936 GCTGGAGGGGACAAGATGAG 59.820 60.000 0.00 0.00 0.00 2.90
49 50 1.871418 CTGGAGGGGACAAGATGAGA 58.129 55.000 0.00 0.00 0.00 3.27
50 51 2.191400 CTGGAGGGGACAAGATGAGAA 58.809 52.381 0.00 0.00 0.00 2.87
51 52 2.170187 CTGGAGGGGACAAGATGAGAAG 59.830 54.545 0.00 0.00 0.00 2.85
52 53 1.134250 GGAGGGGACAAGATGAGAAGC 60.134 57.143 0.00 0.00 0.00 3.86
53 54 0.539051 AGGGGACAAGATGAGAAGCG 59.461 55.000 0.00 0.00 0.00 4.68
54 55 0.462759 GGGGACAAGATGAGAAGCGG 60.463 60.000 0.00 0.00 0.00 5.52
55 56 0.250513 GGGACAAGATGAGAAGCGGT 59.749 55.000 0.00 0.00 0.00 5.68
56 57 1.363744 GGACAAGATGAGAAGCGGTG 58.636 55.000 0.00 0.00 0.00 4.94
57 58 1.338200 GGACAAGATGAGAAGCGGTGT 60.338 52.381 0.00 0.00 0.00 4.16
58 59 2.417719 GACAAGATGAGAAGCGGTGTT 58.582 47.619 0.00 0.00 0.00 3.32
59 60 3.585862 GACAAGATGAGAAGCGGTGTTA 58.414 45.455 0.00 0.00 0.00 2.41
60 61 3.994392 GACAAGATGAGAAGCGGTGTTAA 59.006 43.478 0.00 0.00 0.00 2.01
61 62 4.385825 ACAAGATGAGAAGCGGTGTTAAA 58.614 39.130 0.00 0.00 0.00 1.52
62 63 5.003804 ACAAGATGAGAAGCGGTGTTAAAT 58.996 37.500 0.00 0.00 0.00 1.40
63 64 5.106555 ACAAGATGAGAAGCGGTGTTAAATG 60.107 40.000 0.00 0.00 0.00 2.32
64 65 4.579869 AGATGAGAAGCGGTGTTAAATGT 58.420 39.130 0.00 0.00 0.00 2.71
65 66 5.730550 AGATGAGAAGCGGTGTTAAATGTA 58.269 37.500 0.00 0.00 0.00 2.29
66 67 5.581085 AGATGAGAAGCGGTGTTAAATGTAC 59.419 40.000 0.00 0.00 0.00 2.90
67 68 3.998341 TGAGAAGCGGTGTTAAATGTACC 59.002 43.478 0.00 0.00 0.00 3.34
111 112 4.041917 CATGGCGCTGCGGTGTTT 62.042 61.111 24.61 0.00 0.00 2.83
112 113 3.737172 ATGGCGCTGCGGTGTTTC 61.737 61.111 24.61 5.31 0.00 2.78
118 119 4.072088 CTGCGGTGTTTCGGCGAC 62.072 66.667 10.16 0.00 43.82 5.19
132 133 4.735132 CGACGGGCGTGTGTGGAT 62.735 66.667 0.00 0.00 34.64 3.41
133 134 3.118454 GACGGGCGTGTGTGGATG 61.118 66.667 0.00 0.00 0.00 3.51
134 135 4.697756 ACGGGCGTGTGTGGATGG 62.698 66.667 0.00 0.00 0.00 3.51
135 136 4.386951 CGGGCGTGTGTGGATGGA 62.387 66.667 0.00 0.00 0.00 3.41
136 137 2.272146 GGGCGTGTGTGGATGGAT 59.728 61.111 0.00 0.00 0.00 3.41
137 138 1.524961 GGGCGTGTGTGGATGGATA 59.475 57.895 0.00 0.00 0.00 2.59
138 139 0.814010 GGGCGTGTGTGGATGGATAC 60.814 60.000 0.00 0.00 0.00 2.24
139 140 1.151777 GGCGTGTGTGGATGGATACG 61.152 60.000 0.00 0.00 42.51 3.06
140 141 0.459585 GCGTGTGTGGATGGATACGT 60.460 55.000 0.00 0.00 42.51 3.57
141 142 1.277326 CGTGTGTGGATGGATACGTG 58.723 55.000 0.00 0.00 42.51 4.49
142 143 1.006832 GTGTGTGGATGGATACGTGC 58.993 55.000 0.00 0.00 45.54 5.34
148 149 1.800805 GGATGGATACGTGCAGGATG 58.199 55.000 14.38 0.00 44.54 3.51
149 150 1.344438 GGATGGATACGTGCAGGATGA 59.656 52.381 14.38 0.00 44.54 2.92
150 151 2.027745 GGATGGATACGTGCAGGATGAT 60.028 50.000 14.38 3.26 44.54 2.45
151 152 2.531522 TGGATACGTGCAGGATGATG 57.468 50.000 14.38 0.00 37.83 3.07
152 153 1.151668 GGATACGTGCAGGATGATGC 58.848 55.000 14.38 5.09 46.68 3.91
153 154 1.151668 GATACGTGCAGGATGATGCC 58.848 55.000 14.38 0.00 45.91 4.40
154 155 0.601046 ATACGTGCAGGATGATGCCG 60.601 55.000 14.38 0.00 45.91 5.69
155 156 1.955495 TACGTGCAGGATGATGCCGT 61.955 55.000 14.38 15.62 46.89 5.68
156 157 2.108514 CGTGCAGGATGATGCCGTT 61.109 57.895 0.00 0.00 45.91 4.44
157 158 1.430632 GTGCAGGATGATGCCGTTG 59.569 57.895 0.00 0.00 45.91 4.10
158 159 1.002257 TGCAGGATGATGCCGTTGT 60.002 52.632 0.00 0.00 45.91 3.32
159 160 1.026182 TGCAGGATGATGCCGTTGTC 61.026 55.000 0.00 0.00 45.91 3.18
160 161 0.745845 GCAGGATGATGCCGTTGTCT 60.746 55.000 0.00 0.00 39.69 3.41
161 162 1.012086 CAGGATGATGCCGTTGTCTG 58.988 55.000 0.00 0.00 39.69 3.51
162 163 0.107508 AGGATGATGCCGTTGTCTGG 60.108 55.000 0.00 0.00 0.00 3.86
186 187 4.335647 CGACAGGCCTGGCAAGGT 62.336 66.667 37.35 15.64 46.43 3.50
187 188 2.116125 GACAGGCCTGGCAAGGTT 59.884 61.111 34.67 12.13 46.43 3.50
188 189 2.203538 ACAGGCCTGGCAAGGTTG 60.204 61.111 35.42 10.45 46.43 3.77
189 190 2.993264 CAGGCCTGGCAAGGTTGG 60.993 66.667 26.14 0.00 46.43 3.77
190 191 3.511610 AGGCCTGGCAAGGTTGGT 61.512 61.111 22.05 0.00 46.43 3.67
191 192 3.305516 GGCCTGGCAAGGTTGGTG 61.306 66.667 22.05 0.00 46.43 4.17
192 193 3.994853 GCCTGGCAAGGTTGGTGC 61.995 66.667 15.17 0.00 46.43 5.01
193 194 3.673484 CCTGGCAAGGTTGGTGCG 61.673 66.667 0.00 0.00 43.18 5.34
194 195 2.906897 CTGGCAAGGTTGGTGCGT 60.907 61.111 0.00 0.00 43.18 5.24
195 196 2.904866 TGGCAAGGTTGGTGCGTC 60.905 61.111 0.00 0.00 43.18 5.19
196 197 2.904866 GGCAAGGTTGGTGCGTCA 60.905 61.111 0.00 0.00 43.18 4.35
197 198 2.639286 GCAAGGTTGGTGCGTCAG 59.361 61.111 0.00 0.00 31.20 3.51
198 199 2.186826 GCAAGGTTGGTGCGTCAGT 61.187 57.895 0.00 0.00 31.20 3.41
199 200 0.882927 GCAAGGTTGGTGCGTCAGTA 60.883 55.000 0.00 0.00 31.20 2.74
200 201 0.865769 CAAGGTTGGTGCGTCAGTAC 59.134 55.000 0.00 0.00 0.00 2.73
206 207 4.170723 GTGCGTCAGTACCTGCTC 57.829 61.111 0.00 0.00 0.00 4.26
207 208 1.587054 GTGCGTCAGTACCTGCTCT 59.413 57.895 0.00 0.00 0.00 4.09
208 209 0.809385 GTGCGTCAGTACCTGCTCTA 59.191 55.000 0.00 0.00 0.00 2.43
209 210 1.095600 TGCGTCAGTACCTGCTCTAG 58.904 55.000 0.00 0.00 0.00 2.43
210 211 1.339727 TGCGTCAGTACCTGCTCTAGA 60.340 52.381 0.00 0.00 0.00 2.43
211 212 1.332375 GCGTCAGTACCTGCTCTAGAG 59.668 57.143 15.85 15.85 0.00 2.43
212 213 2.907634 CGTCAGTACCTGCTCTAGAGA 58.092 52.381 24.24 7.73 0.00 3.10
213 214 3.472652 CGTCAGTACCTGCTCTAGAGAT 58.527 50.000 24.24 7.62 0.00 2.75
214 215 3.249799 CGTCAGTACCTGCTCTAGAGATG 59.750 52.174 24.24 13.75 0.00 2.90
215 216 3.568007 GTCAGTACCTGCTCTAGAGATGG 59.432 52.174 24.24 23.03 0.00 3.51
216 217 3.459969 TCAGTACCTGCTCTAGAGATGGA 59.540 47.826 27.50 10.39 0.00 3.41
217 218 4.105537 TCAGTACCTGCTCTAGAGATGGAT 59.894 45.833 27.50 17.87 0.00 3.41
218 219 4.458989 CAGTACCTGCTCTAGAGATGGATC 59.541 50.000 27.50 20.54 0.00 3.36
219 220 2.513753 ACCTGCTCTAGAGATGGATCG 58.486 52.381 27.50 10.56 0.00 3.69
220 221 1.818060 CCTGCTCTAGAGATGGATCGG 59.182 57.143 24.24 9.05 0.00 4.18
221 222 2.513753 CTGCTCTAGAGATGGATCGGT 58.486 52.381 24.24 0.00 0.00 4.69
222 223 2.228582 CTGCTCTAGAGATGGATCGGTG 59.771 54.545 24.24 0.00 0.00 4.94
223 224 2.235016 GCTCTAGAGATGGATCGGTGT 58.765 52.381 24.24 0.00 0.00 4.16
224 225 3.181443 TGCTCTAGAGATGGATCGGTGTA 60.181 47.826 24.24 0.00 0.00 2.90
225 226 3.821600 GCTCTAGAGATGGATCGGTGTAA 59.178 47.826 24.24 0.00 0.00 2.41
226 227 4.083003 GCTCTAGAGATGGATCGGTGTAAG 60.083 50.000 24.24 0.00 0.00 2.34
227 228 5.306114 TCTAGAGATGGATCGGTGTAAGA 57.694 43.478 0.00 0.00 0.00 2.10
228 229 5.064558 TCTAGAGATGGATCGGTGTAAGAC 58.935 45.833 0.00 0.00 0.00 3.01
229 230 2.619177 AGAGATGGATCGGTGTAAGACG 59.381 50.000 0.00 0.00 0.00 4.18
230 231 1.681793 AGATGGATCGGTGTAAGACGG 59.318 52.381 0.00 0.00 0.00 4.79
231 232 0.104304 ATGGATCGGTGTAAGACGGC 59.896 55.000 0.00 0.00 0.00 5.68
232 233 1.588139 GGATCGGTGTAAGACGGCG 60.588 63.158 4.80 4.80 0.00 6.46
233 234 1.588139 GATCGGTGTAAGACGGCGG 60.588 63.158 13.24 0.00 0.00 6.13
234 235 3.711541 ATCGGTGTAAGACGGCGGC 62.712 63.158 13.24 8.92 0.00 6.53
235 236 4.728102 CGGTGTAAGACGGCGGCA 62.728 66.667 18.30 0.41 0.00 5.69
236 237 2.813908 GGTGTAAGACGGCGGCAG 60.814 66.667 18.30 0.00 0.00 4.85
237 238 3.488090 GTGTAAGACGGCGGCAGC 61.488 66.667 18.30 4.66 44.18 5.25
239 240 4.789075 GTAAGACGGCGGCAGCGA 62.789 66.667 18.30 0.00 46.35 4.93
240 241 4.789075 TAAGACGGCGGCAGCGAC 62.789 66.667 18.30 0.00 46.35 5.19
246 247 4.143333 GGCGGCAGCGACCTCTAA 62.143 66.667 3.07 0.00 46.35 2.10
247 248 2.583593 GCGGCAGCGACCTCTAAG 60.584 66.667 0.00 0.00 0.00 2.18
248 249 3.064987 GCGGCAGCGACCTCTAAGA 62.065 63.158 0.00 0.00 0.00 2.10
249 250 1.064946 CGGCAGCGACCTCTAAGAG 59.935 63.158 0.00 0.00 0.00 2.85
250 251 1.658686 CGGCAGCGACCTCTAAGAGT 61.659 60.000 0.00 0.00 0.00 3.24
251 252 0.179124 GGCAGCGACCTCTAAGAGTG 60.179 60.000 0.00 0.00 0.00 3.51
252 253 0.804156 GCAGCGACCTCTAAGAGTGC 60.804 60.000 0.00 0.00 0.00 4.40
253 254 0.524392 CAGCGACCTCTAAGAGTGCG 60.524 60.000 0.00 0.00 0.00 5.34
254 255 0.961358 AGCGACCTCTAAGAGTGCGT 60.961 55.000 0.00 0.00 30.80 5.24
255 256 0.523757 GCGACCTCTAAGAGTGCGTC 60.524 60.000 0.00 0.00 30.80 5.19
256 257 0.247735 CGACCTCTAAGAGTGCGTCG 60.248 60.000 10.84 10.84 0.00 5.12
257 258 0.099082 GACCTCTAAGAGTGCGTCGG 59.901 60.000 0.00 0.00 0.00 4.79
258 259 0.322277 ACCTCTAAGAGTGCGTCGGA 60.322 55.000 0.00 0.00 0.00 4.55
259 260 0.099082 CCTCTAAGAGTGCGTCGGAC 59.901 60.000 9.08 9.08 0.00 4.79
260 261 0.099082 CTCTAAGAGTGCGTCGGACC 59.901 60.000 13.70 5.33 0.00 4.46
261 262 1.226323 CTAAGAGTGCGTCGGACCG 60.226 63.158 13.70 7.84 0.00 4.79
262 263 2.594119 CTAAGAGTGCGTCGGACCGG 62.594 65.000 15.25 0.00 0.00 5.28
264 265 3.434319 GAGTGCGTCGGACCGGTA 61.434 66.667 15.25 0.00 0.00 4.02
265 266 3.673867 GAGTGCGTCGGACCGGTAC 62.674 68.421 15.25 7.05 0.00 3.34
278 279 2.976356 GGTACGTGACCCAGTCCC 59.024 66.667 0.00 0.00 43.25 4.46
279 280 2.570181 GTACGTGACCCAGTCCCG 59.430 66.667 0.00 0.00 39.16 5.14
280 281 2.677524 TACGTGACCCAGTCCCGG 60.678 66.667 0.00 0.00 37.71 5.73
283 284 3.717294 GTGACCCAGTCCCGGCAT 61.717 66.667 0.00 0.00 0.00 4.40
284 285 2.933287 TGACCCAGTCCCGGCATT 60.933 61.111 0.00 0.00 0.00 3.56
285 286 2.438434 GACCCAGTCCCGGCATTG 60.438 66.667 0.00 0.00 0.00 2.82
286 287 3.256960 ACCCAGTCCCGGCATTGT 61.257 61.111 0.00 0.00 0.00 2.71
287 288 2.751436 CCCAGTCCCGGCATTGTG 60.751 66.667 0.00 0.00 0.00 3.33
288 289 2.751436 CCAGTCCCGGCATTGTGG 60.751 66.667 0.00 0.00 0.00 4.17
289 290 3.443045 CAGTCCCGGCATTGTGGC 61.443 66.667 0.00 0.00 39.85 5.01
290 291 3.650950 AGTCCCGGCATTGTGGCT 61.651 61.111 0.00 0.00 41.25 4.75
291 292 2.676471 GTCCCGGCATTGTGGCTT 60.676 61.111 0.00 0.00 41.25 4.35
292 293 2.676121 TCCCGGCATTGTGGCTTG 60.676 61.111 0.00 0.00 41.25 4.01
293 294 3.762247 CCCGGCATTGTGGCTTGG 61.762 66.667 0.00 0.00 41.25 3.61
294 295 4.440127 CCGGCATTGTGGCTTGGC 62.440 66.667 0.00 0.00 41.25 4.52
295 296 3.376078 CGGCATTGTGGCTTGGCT 61.376 61.111 2.03 0.00 41.25 4.75
296 297 2.263540 GGCATTGTGGCTTGGCTG 59.736 61.111 0.00 0.00 40.14 4.85
297 298 2.263540 GCATTGTGGCTTGGCTGG 59.736 61.111 0.00 0.00 0.00 4.85
298 299 2.975536 CATTGTGGCTTGGCTGGG 59.024 61.111 0.00 0.00 0.00 4.45
299 300 2.284112 ATTGTGGCTTGGCTGGGG 60.284 61.111 0.00 0.00 0.00 4.96
303 304 4.764771 TGGCTTGGCTGGGGCATC 62.765 66.667 0.00 0.00 38.08 3.91
311 312 2.595095 CTGGGGCATCCGGCTTTA 59.405 61.111 0.00 0.00 44.01 1.85
312 313 1.077068 CTGGGGCATCCGGCTTTAA 60.077 57.895 0.00 0.00 44.01 1.52
313 314 0.682855 CTGGGGCATCCGGCTTTAAA 60.683 55.000 0.00 0.00 44.01 1.52
314 315 0.032615 TGGGGCATCCGGCTTTAAAT 60.033 50.000 0.00 0.00 44.01 1.40
315 316 0.389025 GGGGCATCCGGCTTTAAATG 59.611 55.000 0.00 0.00 44.01 2.32
316 317 1.111277 GGGCATCCGGCTTTAAATGT 58.889 50.000 0.00 0.00 44.01 2.71
317 318 1.480545 GGGCATCCGGCTTTAAATGTT 59.519 47.619 0.00 0.00 44.01 2.71
318 319 2.691011 GGGCATCCGGCTTTAAATGTTA 59.309 45.455 0.00 0.00 44.01 2.41
319 320 3.243401 GGGCATCCGGCTTTAAATGTTAG 60.243 47.826 0.00 0.00 44.01 2.34
320 321 3.630312 GGCATCCGGCTTTAAATGTTAGA 59.370 43.478 0.00 0.00 44.01 2.10
321 322 4.497507 GGCATCCGGCTTTAAATGTTAGAC 60.498 45.833 0.00 0.00 44.01 2.59
322 323 4.335594 GCATCCGGCTTTAAATGTTAGACT 59.664 41.667 0.00 0.00 40.25 3.24
323 324 5.163652 GCATCCGGCTTTAAATGTTAGACTT 60.164 40.000 0.00 0.00 40.25 3.01
324 325 6.625081 GCATCCGGCTTTAAATGTTAGACTTT 60.625 38.462 0.00 0.00 40.25 2.66
325 326 6.249035 TCCGGCTTTAAATGTTAGACTTTG 57.751 37.500 0.00 0.00 0.00 2.77
326 327 5.182380 TCCGGCTTTAAATGTTAGACTTTGG 59.818 40.000 0.00 0.00 0.00 3.28
327 328 5.048294 CCGGCTTTAAATGTTAGACTTTGGT 60.048 40.000 0.00 0.00 0.00 3.67
328 329 5.856455 CGGCTTTAAATGTTAGACTTTGGTG 59.144 40.000 0.00 0.00 0.00 4.17
329 330 5.633601 GGCTTTAAATGTTAGACTTTGGTGC 59.366 40.000 0.00 0.00 0.00 5.01
330 331 5.342259 GCTTTAAATGTTAGACTTTGGTGCG 59.658 40.000 0.00 0.00 0.00 5.34
331 332 6.621316 TTTAAATGTTAGACTTTGGTGCGA 57.379 33.333 0.00 0.00 0.00 5.10
332 333 6.811253 TTAAATGTTAGACTTTGGTGCGAT 57.189 33.333 0.00 0.00 0.00 4.58
333 334 4.685169 AATGTTAGACTTTGGTGCGATG 57.315 40.909 0.00 0.00 0.00 3.84
334 335 3.120321 TGTTAGACTTTGGTGCGATGT 57.880 42.857 0.00 0.00 0.00 3.06
335 336 3.064207 TGTTAGACTTTGGTGCGATGTC 58.936 45.455 0.00 0.00 0.00 3.06
336 337 3.244078 TGTTAGACTTTGGTGCGATGTCT 60.244 43.478 0.00 0.00 40.52 3.41
337 338 1.800805 AGACTTTGGTGCGATGTCTG 58.199 50.000 0.00 0.00 36.74 3.51
338 339 1.070758 AGACTTTGGTGCGATGTCTGT 59.929 47.619 0.00 0.00 36.74 3.41
339 340 1.873591 GACTTTGGTGCGATGTCTGTT 59.126 47.619 0.00 0.00 0.00 3.16
340 341 2.290641 GACTTTGGTGCGATGTCTGTTT 59.709 45.455 0.00 0.00 0.00 2.83
341 342 2.033299 ACTTTGGTGCGATGTCTGTTTG 59.967 45.455 0.00 0.00 0.00 2.93
342 343 0.950836 TTGGTGCGATGTCTGTTTGG 59.049 50.000 0.00 0.00 0.00 3.28
343 344 0.179032 TGGTGCGATGTCTGTTTGGT 60.179 50.000 0.00 0.00 0.00 3.67
344 345 1.070914 TGGTGCGATGTCTGTTTGGTA 59.929 47.619 0.00 0.00 0.00 3.25
345 346 2.290008 TGGTGCGATGTCTGTTTGGTAT 60.290 45.455 0.00 0.00 0.00 2.73
346 347 2.747446 GGTGCGATGTCTGTTTGGTATT 59.253 45.455 0.00 0.00 0.00 1.89
347 348 3.181510 GGTGCGATGTCTGTTTGGTATTC 60.182 47.826 0.00 0.00 0.00 1.75
348 349 2.670905 TGCGATGTCTGTTTGGTATTCG 59.329 45.455 0.00 0.00 0.00 3.34
349 350 2.030457 GCGATGTCTGTTTGGTATTCGG 59.970 50.000 0.00 0.00 0.00 4.30
350 351 3.259064 CGATGTCTGTTTGGTATTCGGT 58.741 45.455 0.00 0.00 0.00 4.69
351 352 3.682858 CGATGTCTGTTTGGTATTCGGTT 59.317 43.478 0.00 0.00 0.00 4.44
352 353 4.201685 CGATGTCTGTTTGGTATTCGGTTC 60.202 45.833 0.00 0.00 0.00 3.62
353 354 3.061322 TGTCTGTTTGGTATTCGGTTCG 58.939 45.455 0.00 0.00 0.00 3.95
354 355 2.414138 GTCTGTTTGGTATTCGGTTCGG 59.586 50.000 0.00 0.00 0.00 4.30
355 356 2.299582 TCTGTTTGGTATTCGGTTCGGA 59.700 45.455 0.00 0.00 0.00 4.55
356 357 2.414138 CTGTTTGGTATTCGGTTCGGAC 59.586 50.000 0.00 0.00 0.00 4.79
357 358 2.224233 TGTTTGGTATTCGGTTCGGACA 60.224 45.455 0.00 0.00 0.00 4.02
358 359 3.004862 GTTTGGTATTCGGTTCGGACAT 58.995 45.455 0.00 0.00 0.00 3.06
359 360 2.589798 TGGTATTCGGTTCGGACATC 57.410 50.000 0.00 0.00 0.00 3.06
360 361 2.104967 TGGTATTCGGTTCGGACATCT 58.895 47.619 0.00 0.00 0.00 2.90
361 362 2.159156 TGGTATTCGGTTCGGACATCTG 60.159 50.000 0.00 0.00 0.00 2.90
362 363 1.859080 GTATTCGGTTCGGACATCTGC 59.141 52.381 0.00 0.00 0.00 4.26
363 364 0.249120 ATTCGGTTCGGACATCTGCA 59.751 50.000 0.00 0.00 0.00 4.41
364 365 0.249120 TTCGGTTCGGACATCTGCAT 59.751 50.000 0.00 0.00 0.00 3.96
365 366 0.179111 TCGGTTCGGACATCTGCATC 60.179 55.000 0.00 0.00 0.00 3.91
366 367 1.154205 CGGTTCGGACATCTGCATCC 61.154 60.000 0.00 0.00 0.00 3.51
367 368 0.815615 GGTTCGGACATCTGCATCCC 60.816 60.000 0.00 0.00 0.00 3.85
368 369 0.179000 GTTCGGACATCTGCATCCCT 59.821 55.000 0.00 0.00 0.00 4.20
369 370 0.911769 TTCGGACATCTGCATCCCTT 59.088 50.000 0.00 0.00 0.00 3.95
370 371 0.465705 TCGGACATCTGCATCCCTTC 59.534 55.000 0.00 0.00 0.00 3.46
371 372 0.178767 CGGACATCTGCATCCCTTCA 59.821 55.000 0.00 0.00 0.00 3.02
372 373 1.202734 CGGACATCTGCATCCCTTCAT 60.203 52.381 0.00 0.00 0.00 2.57
373 374 2.502295 GGACATCTGCATCCCTTCATC 58.498 52.381 0.00 0.00 0.00 2.92
374 375 2.158711 GGACATCTGCATCCCTTCATCA 60.159 50.000 0.00 0.00 0.00 3.07
375 376 3.548770 GACATCTGCATCCCTTCATCAA 58.451 45.455 0.00 0.00 0.00 2.57
376 377 3.552875 ACATCTGCATCCCTTCATCAAG 58.447 45.455 0.00 0.00 0.00 3.02
391 392 5.697473 TCATCAAGGAGATAAGAGTAGCG 57.303 43.478 0.00 0.00 34.43 4.26
392 393 5.377478 TCATCAAGGAGATAAGAGTAGCGA 58.623 41.667 0.00 0.00 34.43 4.93
393 394 5.471797 TCATCAAGGAGATAAGAGTAGCGAG 59.528 44.000 0.00 0.00 34.43 5.03
394 395 5.037383 TCAAGGAGATAAGAGTAGCGAGA 57.963 43.478 0.00 0.00 0.00 4.04
395 396 5.060506 TCAAGGAGATAAGAGTAGCGAGAG 58.939 45.833 0.00 0.00 0.00 3.20
396 397 4.015872 AGGAGATAAGAGTAGCGAGAGG 57.984 50.000 0.00 0.00 0.00 3.69
397 398 9.543474 ATCAAGGAGATAAGAGTAGCGAGAGGT 62.543 44.444 0.00 0.00 39.61 3.85
398 399 3.500680 GGAGATAAGAGTAGCGAGAGGTG 59.499 52.174 0.00 0.00 44.53 4.00
399 400 4.131596 GAGATAAGAGTAGCGAGAGGTGT 58.868 47.826 0.00 0.00 44.53 4.16
400 401 4.528920 AGATAAGAGTAGCGAGAGGTGTT 58.471 43.478 0.00 0.00 44.53 3.32
401 402 4.336993 AGATAAGAGTAGCGAGAGGTGTTG 59.663 45.833 0.00 0.00 44.53 3.33
402 403 0.528470 AGAGTAGCGAGAGGTGTTGC 59.472 55.000 0.00 0.00 44.53 4.17
403 404 0.458716 GAGTAGCGAGAGGTGTTGCC 60.459 60.000 0.00 0.00 44.53 4.52
404 405 1.185618 AGTAGCGAGAGGTGTTGCCA 61.186 55.000 0.00 0.00 44.53 4.92
405 406 0.320421 GTAGCGAGAGGTGTTGCCAA 60.320 55.000 0.00 0.00 44.53 4.52
406 407 0.037326 TAGCGAGAGGTGTTGCCAAG 60.037 55.000 0.00 0.00 44.53 3.61
407 408 1.301716 GCGAGAGGTGTTGCCAAGA 60.302 57.895 0.00 0.00 40.61 3.02
408 409 0.674895 GCGAGAGGTGTTGCCAAGAT 60.675 55.000 0.00 0.00 40.61 2.40
409 410 1.081892 CGAGAGGTGTTGCCAAGATG 58.918 55.000 0.00 0.00 40.61 2.90
410 411 1.338105 CGAGAGGTGTTGCCAAGATGA 60.338 52.381 0.00 0.00 40.61 2.92
411 412 2.679059 CGAGAGGTGTTGCCAAGATGAT 60.679 50.000 0.00 0.00 40.61 2.45
412 413 3.430790 CGAGAGGTGTTGCCAAGATGATA 60.431 47.826 0.00 0.00 40.61 2.15
413 414 4.125703 GAGAGGTGTTGCCAAGATGATAG 58.874 47.826 0.00 0.00 40.61 2.08
414 415 2.615912 GAGGTGTTGCCAAGATGATAGC 59.384 50.000 0.00 0.00 40.61 2.97
415 416 2.240667 AGGTGTTGCCAAGATGATAGCT 59.759 45.455 0.00 0.00 40.61 3.32
416 417 3.019564 GGTGTTGCCAAGATGATAGCTT 58.980 45.455 0.00 0.00 37.17 3.74
417 418 3.065925 GGTGTTGCCAAGATGATAGCTTC 59.934 47.826 0.00 0.00 37.17 3.86
418 419 3.691118 GTGTTGCCAAGATGATAGCTTCA 59.309 43.478 0.00 0.00 39.12 3.02
419 420 6.666998 GGTGTTGCCAAGATGATAGCTTCAT 61.667 44.000 10.07 10.07 41.66 2.57
420 421 4.337274 TGTTGCCAAGATGATAGCTTCATG 59.663 41.667 13.78 0.00 45.29 3.07
421 422 2.882761 TGCCAAGATGATAGCTTCATGC 59.117 45.455 13.78 11.52 45.29 4.06
438 439 8.649973 GCTTCATGCTTACTTATGTACTACTT 57.350 34.615 0.00 0.00 38.95 2.24
439 440 9.099454 GCTTCATGCTTACTTATGTACTACTTT 57.901 33.333 0.00 0.00 38.95 2.66
441 442 9.938280 TTCATGCTTACTTATGTACTACTTTGT 57.062 29.630 0.00 0.00 0.00 2.83
442 443 9.366216 TCATGCTTACTTATGTACTACTTTGTG 57.634 33.333 0.00 0.00 0.00 3.33
443 444 8.604035 CATGCTTACTTATGTACTACTTTGTGG 58.396 37.037 0.00 0.00 0.00 4.17
444 445 7.898918 TGCTTACTTATGTACTACTTTGTGGA 58.101 34.615 0.00 0.00 0.00 4.02
445 446 8.537016 TGCTTACTTATGTACTACTTTGTGGAT 58.463 33.333 0.00 0.00 0.00 3.41
463 464 8.885494 TTGTGGATAATTATTAAAATGGCTGC 57.115 30.769 0.00 0.00 0.00 5.25
464 465 8.248904 TGTGGATAATTATTAAAATGGCTGCT 57.751 30.769 0.00 0.00 0.00 4.24
465 466 8.143193 TGTGGATAATTATTAAAATGGCTGCTG 58.857 33.333 0.00 0.00 0.00 4.41
466 467 8.359642 GTGGATAATTATTAAAATGGCTGCTGA 58.640 33.333 0.00 0.00 0.00 4.26
467 468 9.092338 TGGATAATTATTAAAATGGCTGCTGAT 57.908 29.630 0.00 0.00 0.00 2.90
468 469 9.362539 GGATAATTATTAAAATGGCTGCTGATG 57.637 33.333 0.00 0.00 0.00 3.07
469 470 9.918630 GATAATTATTAAAATGGCTGCTGATGT 57.081 29.630 0.00 0.00 0.00 3.06
470 471 9.701098 ATAATTATTAAAATGGCTGCTGATGTG 57.299 29.630 0.00 0.00 0.00 3.21
471 472 6.772360 TTATTAAAATGGCTGCTGATGTGA 57.228 33.333 0.00 0.00 0.00 3.58
472 473 5.664294 ATTAAAATGGCTGCTGATGTGAA 57.336 34.783 0.00 0.00 0.00 3.18
473 474 3.308438 AAAATGGCTGCTGATGTGAAC 57.692 42.857 0.00 0.00 0.00 3.18
474 475 1.180029 AATGGCTGCTGATGTGAACC 58.820 50.000 0.00 0.00 0.00 3.62
475 476 0.330604 ATGGCTGCTGATGTGAACCT 59.669 50.000 0.00 0.00 0.00 3.50
476 477 0.983467 TGGCTGCTGATGTGAACCTA 59.017 50.000 0.00 0.00 0.00 3.08
477 478 1.350684 TGGCTGCTGATGTGAACCTAA 59.649 47.619 0.00 0.00 0.00 2.69
478 479 2.224744 TGGCTGCTGATGTGAACCTAAA 60.225 45.455 0.00 0.00 0.00 1.85
479 480 2.421424 GGCTGCTGATGTGAACCTAAAG 59.579 50.000 0.00 0.00 0.00 1.85
480 481 2.421424 GCTGCTGATGTGAACCTAAAGG 59.579 50.000 0.00 0.00 42.17 3.11
495 496 3.924686 CCTAAAGGTTGTAGTGTACTGCG 59.075 47.826 0.00 0.00 0.00 5.18
496 497 2.450609 AAGGTTGTAGTGTACTGCGG 57.549 50.000 0.00 0.00 0.00 5.69
497 498 0.606604 AGGTTGTAGTGTACTGCGGG 59.393 55.000 0.00 0.00 0.00 6.13
498 499 1.017701 GGTTGTAGTGTACTGCGGGC 61.018 60.000 0.00 0.00 0.00 6.13
499 500 0.037605 GTTGTAGTGTACTGCGGGCT 60.038 55.000 0.00 0.00 0.00 5.19
500 501 0.245539 TTGTAGTGTACTGCGGGCTC 59.754 55.000 0.00 0.00 0.00 4.70
501 502 1.141234 GTAGTGTACTGCGGGCTCC 59.859 63.158 0.00 0.00 0.00 4.70
511 512 4.077184 CGGGCTCCGGTGCTTGTA 62.077 66.667 26.25 0.00 44.15 2.41
512 513 2.125106 GGGCTCCGGTGCTTGTAG 60.125 66.667 26.25 3.99 0.00 2.74
513 514 2.125106 GGCTCCGGTGCTTGTAGG 60.125 66.667 26.25 0.00 0.00 3.18
514 515 2.820037 GCTCCGGTGCTTGTAGGC 60.820 66.667 20.97 0.11 0.00 3.93
515 516 2.662596 CTCCGGTGCTTGTAGGCA 59.337 61.111 0.00 0.00 40.15 4.75
523 524 2.391616 TGCTTGTAGGCACAGATCTG 57.608 50.000 21.37 21.37 37.29 2.90
524 525 1.065926 TGCTTGTAGGCACAGATCTGG 60.066 52.381 26.08 15.76 37.29 3.86
525 526 1.208052 GCTTGTAGGCACAGATCTGGA 59.792 52.381 26.08 3.78 35.67 3.86
526 527 2.158842 GCTTGTAGGCACAGATCTGGAT 60.159 50.000 26.08 11.31 35.67 3.41
527 528 3.464907 CTTGTAGGCACAGATCTGGATG 58.535 50.000 26.08 16.94 35.67 3.51
528 529 2.470990 TGTAGGCACAGATCTGGATGT 58.529 47.619 26.08 10.81 34.19 3.06
529 530 3.642141 TGTAGGCACAGATCTGGATGTA 58.358 45.455 26.08 9.86 34.19 2.29
530 531 3.638627 TGTAGGCACAGATCTGGATGTAG 59.361 47.826 26.08 9.79 34.19 2.74
531 532 2.756907 AGGCACAGATCTGGATGTAGT 58.243 47.619 26.08 0.53 34.19 2.73
532 533 3.110705 AGGCACAGATCTGGATGTAGTT 58.889 45.455 26.08 0.00 34.19 2.24
533 534 3.521126 AGGCACAGATCTGGATGTAGTTT 59.479 43.478 26.08 0.00 34.19 2.66
534 535 4.018960 AGGCACAGATCTGGATGTAGTTTT 60.019 41.667 26.08 0.00 34.19 2.43
535 536 4.702131 GGCACAGATCTGGATGTAGTTTTT 59.298 41.667 26.08 0.00 34.19 1.94
536 537 5.392380 GGCACAGATCTGGATGTAGTTTTTG 60.392 44.000 26.08 11.65 34.19 2.44
537 538 5.634896 CACAGATCTGGATGTAGTTTTTGC 58.365 41.667 26.08 0.00 34.19 3.68
538 539 5.413833 CACAGATCTGGATGTAGTTTTTGCT 59.586 40.000 26.08 0.00 34.19 3.91
539 540 6.006449 ACAGATCTGGATGTAGTTTTTGCTT 58.994 36.000 26.08 0.00 34.19 3.91
540 541 6.491403 ACAGATCTGGATGTAGTTTTTGCTTT 59.509 34.615 26.08 0.00 34.19 3.51
541 542 7.014615 ACAGATCTGGATGTAGTTTTTGCTTTT 59.985 33.333 26.08 0.00 34.19 2.27
542 543 7.327761 CAGATCTGGATGTAGTTTTTGCTTTTG 59.672 37.037 15.38 0.00 0.00 2.44
543 544 6.707440 TCTGGATGTAGTTTTTGCTTTTGA 57.293 33.333 0.00 0.00 0.00 2.69
544 545 7.288810 TCTGGATGTAGTTTTTGCTTTTGAT 57.711 32.000 0.00 0.00 0.00 2.57
545 546 7.147312 TCTGGATGTAGTTTTTGCTTTTGATG 58.853 34.615 0.00 0.00 0.00 3.07
546 547 6.815089 TGGATGTAGTTTTTGCTTTTGATGT 58.185 32.000 0.00 0.00 0.00 3.06
547 548 6.700960 TGGATGTAGTTTTTGCTTTTGATGTG 59.299 34.615 0.00 0.00 0.00 3.21
548 549 5.964887 TGTAGTTTTTGCTTTTGATGTGC 57.035 34.783 0.00 0.00 0.00 4.57
549 550 5.659463 TGTAGTTTTTGCTTTTGATGTGCT 58.341 33.333 0.00 0.00 0.00 4.40
550 551 6.105333 TGTAGTTTTTGCTTTTGATGTGCTT 58.895 32.000 0.00 0.00 0.00 3.91
551 552 6.593382 TGTAGTTTTTGCTTTTGATGTGCTTT 59.407 30.769 0.00 0.00 0.00 3.51
552 553 5.871539 AGTTTTTGCTTTTGATGTGCTTTG 58.128 33.333 0.00 0.00 0.00 2.77
553 554 5.412286 AGTTTTTGCTTTTGATGTGCTTTGT 59.588 32.000 0.00 0.00 0.00 2.83
554 555 6.593382 AGTTTTTGCTTTTGATGTGCTTTGTA 59.407 30.769 0.00 0.00 0.00 2.41
555 556 5.964887 TTTGCTTTTGATGTGCTTTGTAC 57.035 34.783 0.00 0.00 0.00 2.90
556 557 4.916983 TGCTTTTGATGTGCTTTGTACT 57.083 36.364 0.00 0.00 0.00 2.73
557 558 6.384258 TTGCTTTTGATGTGCTTTGTACTA 57.616 33.333 0.00 0.00 0.00 1.82
558 559 6.000891 TGCTTTTGATGTGCTTTGTACTAG 57.999 37.500 0.00 0.00 0.00 2.57
559 560 5.530915 TGCTTTTGATGTGCTTTGTACTAGT 59.469 36.000 0.00 0.00 0.00 2.57
560 561 6.708502 TGCTTTTGATGTGCTTTGTACTAGTA 59.291 34.615 0.00 0.00 0.00 1.82
561 562 7.015877 GCTTTTGATGTGCTTTGTACTAGTAC 58.984 38.462 23.58 23.58 36.63 2.73
562 563 7.095187 GCTTTTGATGTGCTTTGTACTAGTACT 60.095 37.037 28.56 10.17 37.00 2.73
563 564 9.419297 CTTTTGATGTGCTTTGTACTAGTACTA 57.581 33.333 28.56 20.97 37.00 1.82
564 565 9.938280 TTTTGATGTGCTTTGTACTAGTACTAT 57.062 29.630 28.56 9.57 37.00 2.12
565 566 9.582431 TTTGATGTGCTTTGTACTAGTACTATC 57.418 33.333 28.56 16.76 37.00 2.08
566 567 8.521170 TGATGTGCTTTGTACTAGTACTATCT 57.479 34.615 28.56 9.49 37.00 1.98
567 568 8.967918 TGATGTGCTTTGTACTAGTACTATCTT 58.032 33.333 28.56 13.56 37.00 2.40
624 625 2.800250 AGCAGCTCAGCCTTTGTTTAT 58.200 42.857 0.00 0.00 34.23 1.40
629 630 5.107337 GCAGCTCAGCCTTTGTTTATTTTTC 60.107 40.000 0.00 0.00 0.00 2.29
633 634 6.925718 GCTCAGCCTTTGTTTATTTTTCTCTT 59.074 34.615 0.00 0.00 0.00 2.85
634 635 8.082242 GCTCAGCCTTTGTTTATTTTTCTCTTA 58.918 33.333 0.00 0.00 0.00 2.10
635 636 9.617975 CTCAGCCTTTGTTTATTTTTCTCTTAG 57.382 33.333 0.00 0.00 0.00 2.18
651 652 8.975663 TTTCTCTTAGCAGATGATTTGATGAT 57.024 30.769 0.00 0.00 0.00 2.45
732 743 4.054455 CACGCGTACGCACACACC 62.054 66.667 36.44 8.82 45.53 4.16
742 753 1.150536 GCACACACCTTCCCTTGGA 59.849 57.895 0.00 0.00 0.00 3.53
745 756 1.352352 CACACACCTTCCCTTGGAGAT 59.648 52.381 0.00 0.00 31.21 2.75
747 758 2.040412 ACACACCTTCCCTTGGAGATTC 59.960 50.000 0.00 0.00 31.21 2.52
748 759 1.636003 ACACCTTCCCTTGGAGATTCC 59.364 52.381 0.00 0.00 36.96 3.01
749 760 1.635487 CACCTTCCCTTGGAGATTCCA 59.365 52.381 0.00 0.00 46.61 3.53
855 870 1.596464 CCGATACCGAGTTACTGTCGC 60.596 57.143 0.00 0.00 38.22 5.19
894 926 5.048846 ACATAACCTCAAGGAACAACACT 57.951 39.130 2.30 0.00 38.94 3.55
924 956 0.103026 TCCTCCATCAATCGCGTCAG 59.897 55.000 5.77 0.00 0.00 3.51
954 987 3.584848 CTCTTCTTCCTTCCTTTCTCCCA 59.415 47.826 0.00 0.00 0.00 4.37
1038 1071 2.885113 CAGATCGTCGGACAGGCA 59.115 61.111 9.10 0.00 0.00 4.75
1292 1325 1.532868 CAACTTCCTGCAGTTTCTCGG 59.467 52.381 13.81 0.00 34.60 4.63
1294 1327 1.270358 ACTTCCTGCAGTTTCTCGGAC 60.270 52.381 13.81 0.00 0.00 4.79
1358 1391 2.717809 GAAGCAACGACGGCGACTC 61.718 63.158 22.49 4.96 41.64 3.36
1372 1408 0.456824 CGACTCCATGTGTGAGGACG 60.457 60.000 3.03 4.45 34.06 4.79
1383 1419 1.199327 TGTGAGGACGAAGATGACGAC 59.801 52.381 0.00 0.00 34.70 4.34
1397 1433 2.065906 GACGACGAGGAGGAGATGGC 62.066 65.000 0.00 0.00 0.00 4.40
1497 1541 2.183300 CGGCCTCGTTCGGATCAA 59.817 61.111 0.00 0.00 0.00 2.57
1498 1542 1.878522 CGGCCTCGTTCGGATCAAG 60.879 63.158 0.00 0.00 0.00 3.02
1499 1543 1.515954 GGCCTCGTTCGGATCAAGA 59.484 57.895 0.00 0.00 0.00 3.02
1500 1544 0.528684 GGCCTCGTTCGGATCAAGAG 60.529 60.000 0.00 0.00 0.00 2.85
1501 1545 0.456221 GCCTCGTTCGGATCAAGAGA 59.544 55.000 0.00 0.00 0.00 3.10
1502 1546 1.067821 GCCTCGTTCGGATCAAGAGAT 59.932 52.381 0.00 0.00 37.13 2.75
1554 1830 2.880268 TCCTGCTTTCATGTGTGTTCTG 59.120 45.455 0.00 0.00 0.00 3.02
1555 1831 2.620115 CCTGCTTTCATGTGTGTTCTGT 59.380 45.455 0.00 0.00 0.00 3.41
1568 1844 4.755123 GTGTGTTCTGTAACAGTGCCTTAT 59.245 41.667 0.00 0.00 46.06 1.73
1601 1877 3.643159 AGAACAAAGATGAAAACGGCC 57.357 42.857 0.00 0.00 0.00 6.13
1689 1976 8.980596 TGGGTCAGAGAATAATGCATTTTATTT 58.019 29.630 18.75 6.77 33.11 1.40
1705 1992 7.765819 GCATTTTATTTGGGATTGCTACTTTCT 59.234 33.333 0.00 0.00 0.00 2.52
1739 2026 7.864882 CGAGAAATGAATATGAAGAGCTACTCA 59.135 37.037 0.00 0.00 32.06 3.41
1764 2051 0.474854 TTGGGTAGAGGGCAAGGTCA 60.475 55.000 0.00 0.00 0.00 4.02
1803 2928 7.337942 CAGAAAATCCCTAATTCACTAAGCAGT 59.662 37.037 0.00 0.00 34.42 4.40
1837 2962 4.093703 TGCAACCGGTAGATAAATCAAACG 59.906 41.667 8.00 0.00 0.00 3.60
1962 4979 7.094848 GCCACAATTTTAAATAAAGTGCCATGT 60.095 33.333 10.35 0.00 0.00 3.21
2077 5098 0.846693 AACCAAGCAAGAGTGTCCCT 59.153 50.000 0.00 0.00 0.00 4.20
2124 5152 1.710996 TTTCCCGTTTGCTCCCCTCA 61.711 55.000 0.00 0.00 0.00 3.86
2136 5164 0.649992 TCCCCTCATCTCAATCCCCT 59.350 55.000 0.00 0.00 0.00 4.79
2137 5165 1.011293 TCCCCTCATCTCAATCCCCTT 59.989 52.381 0.00 0.00 0.00 3.95
2138 5166 1.144503 CCCCTCATCTCAATCCCCTTG 59.855 57.143 0.00 0.00 36.09 3.61
2223 5251 0.391661 GGCTCGAGACAAAGATGGCA 60.392 55.000 18.75 0.00 36.86 4.92
2330 5358 1.465172 GTTGGGGGCTTCTTTCCCT 59.535 57.895 0.00 0.00 43.41 4.20
2344 5372 1.133181 TTCCCTGGTCCAGCACATCA 61.133 55.000 13.99 0.00 0.00 3.07
2348 5376 0.176449 CTGGTCCAGCACATCATCGA 59.824 55.000 5.79 0.00 0.00 3.59
2415 5443 0.542702 CCCCACACATTGCCTTCCTT 60.543 55.000 0.00 0.00 0.00 3.36
2455 5483 2.229062 TCTTAGTGACAACGAGGCAGAG 59.771 50.000 0.00 0.00 34.37 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.987807 CTCCAAGACGATGCCCCCAT 61.988 60.000 0.00 0.00 0.00 4.00
2 3 2.190578 CTCCAAGACGATGCCCCC 59.809 66.667 0.00 0.00 0.00 5.40
4 5 1.372087 CTTGCTCCAAGACGATGCCC 61.372 60.000 0.00 0.00 43.42 5.36
5 6 0.674895 ACTTGCTCCAAGACGATGCC 60.675 55.000 11.56 0.00 43.42 4.40
6 7 0.445436 CACTTGCTCCAAGACGATGC 59.555 55.000 11.56 0.00 43.42 3.91
7 8 0.445436 GCACTTGCTCCAAGACGATG 59.555 55.000 11.56 1.35 43.42 3.84
8 9 2.846371 GCACTTGCTCCAAGACGAT 58.154 52.632 11.56 0.00 43.42 3.73
9 10 4.361253 GCACTTGCTCCAAGACGA 57.639 55.556 11.56 0.00 43.42 4.20
20 21 2.360852 CCCTCCAGCCAGCACTTG 60.361 66.667 0.00 0.00 0.00 3.16
21 22 3.655211 CCCCTCCAGCCAGCACTT 61.655 66.667 0.00 0.00 0.00 3.16
22 23 4.664267 TCCCCTCCAGCCAGCACT 62.664 66.667 0.00 0.00 0.00 4.40
23 24 4.416738 GTCCCCTCCAGCCAGCAC 62.417 72.222 0.00 0.00 0.00 4.40
24 25 4.980592 TGTCCCCTCCAGCCAGCA 62.981 66.667 0.00 0.00 0.00 4.41
25 26 3.635268 CTTGTCCCCTCCAGCCAGC 62.635 68.421 0.00 0.00 0.00 4.85
26 27 1.277580 ATCTTGTCCCCTCCAGCCAG 61.278 60.000 0.00 0.00 0.00 4.85
27 28 1.229951 ATCTTGTCCCCTCCAGCCA 60.230 57.895 0.00 0.00 0.00 4.75
28 29 1.225704 CATCTTGTCCCCTCCAGCC 59.774 63.158 0.00 0.00 0.00 4.85
29 30 0.179936 CTCATCTTGTCCCCTCCAGC 59.820 60.000 0.00 0.00 0.00 4.85
30 31 1.871418 TCTCATCTTGTCCCCTCCAG 58.129 55.000 0.00 0.00 0.00 3.86
31 32 2.191400 CTTCTCATCTTGTCCCCTCCA 58.809 52.381 0.00 0.00 0.00 3.86
32 33 1.134250 GCTTCTCATCTTGTCCCCTCC 60.134 57.143 0.00 0.00 0.00 4.30
33 34 1.472376 CGCTTCTCATCTTGTCCCCTC 60.472 57.143 0.00 0.00 0.00 4.30
34 35 0.539051 CGCTTCTCATCTTGTCCCCT 59.461 55.000 0.00 0.00 0.00 4.79
35 36 0.462759 CCGCTTCTCATCTTGTCCCC 60.463 60.000 0.00 0.00 0.00 4.81
36 37 0.250513 ACCGCTTCTCATCTTGTCCC 59.749 55.000 0.00 0.00 0.00 4.46
37 38 1.338200 ACACCGCTTCTCATCTTGTCC 60.338 52.381 0.00 0.00 0.00 4.02
38 39 2.086054 ACACCGCTTCTCATCTTGTC 57.914 50.000 0.00 0.00 0.00 3.18
39 40 2.550830 AACACCGCTTCTCATCTTGT 57.449 45.000 0.00 0.00 0.00 3.16
40 41 5.106555 ACATTTAACACCGCTTCTCATCTTG 60.107 40.000 0.00 0.00 0.00 3.02
41 42 5.003804 ACATTTAACACCGCTTCTCATCTT 58.996 37.500 0.00 0.00 0.00 2.40
42 43 4.579869 ACATTTAACACCGCTTCTCATCT 58.420 39.130 0.00 0.00 0.00 2.90
43 44 4.946784 ACATTTAACACCGCTTCTCATC 57.053 40.909 0.00 0.00 0.00 2.92
44 45 4.634443 GGTACATTTAACACCGCTTCTCAT 59.366 41.667 0.00 0.00 0.00 2.90
45 46 3.998341 GGTACATTTAACACCGCTTCTCA 59.002 43.478 0.00 0.00 0.00 3.27
46 47 4.595198 GGTACATTTAACACCGCTTCTC 57.405 45.455 0.00 0.00 0.00 2.87
53 54 2.414957 GCCTTGCGGTACATTTAACACC 60.415 50.000 0.00 0.00 0.00 4.16
54 55 2.414957 GGCCTTGCGGTACATTTAACAC 60.415 50.000 0.00 0.00 0.00 3.32
55 56 1.813786 GGCCTTGCGGTACATTTAACA 59.186 47.619 0.00 0.00 0.00 2.41
56 57 1.202098 CGGCCTTGCGGTACATTTAAC 60.202 52.381 0.00 0.00 0.00 2.01
57 58 1.088306 CGGCCTTGCGGTACATTTAA 58.912 50.000 0.00 0.00 0.00 1.52
58 59 0.249676 TCGGCCTTGCGGTACATTTA 59.750 50.000 0.00 0.00 0.00 1.40
59 60 1.003112 TCGGCCTTGCGGTACATTT 60.003 52.632 0.00 0.00 0.00 2.32
60 61 1.743995 GTCGGCCTTGCGGTACATT 60.744 57.895 0.00 0.00 0.00 2.71
61 62 2.125269 GTCGGCCTTGCGGTACAT 60.125 61.111 0.00 0.00 0.00 2.29
62 63 3.307906 AGTCGGCCTTGCGGTACA 61.308 61.111 0.00 0.00 0.00 2.90
63 64 2.813908 CAGTCGGCCTTGCGGTAC 60.814 66.667 0.00 0.00 0.00 3.34
64 65 4.752879 GCAGTCGGCCTTGCGGTA 62.753 66.667 0.00 0.00 36.11 4.02
94 95 3.951655 GAAACACCGCAGCGCCATG 62.952 63.158 10.07 9.80 0.00 3.66
95 96 3.737172 GAAACACCGCAGCGCCAT 61.737 61.111 10.07 0.00 0.00 4.40
101 102 4.072088 GTCGCCGAAACACCGCAG 62.072 66.667 0.00 0.00 0.00 5.18
115 116 4.735132 ATCCACACACGCCCGTCG 62.735 66.667 0.00 0.00 45.38 5.12
116 117 3.118454 CATCCACACACGCCCGTC 61.118 66.667 0.00 0.00 0.00 4.79
117 118 4.697756 CCATCCACACACGCCCGT 62.698 66.667 0.00 0.00 0.00 5.28
118 119 2.304901 TATCCATCCACACACGCCCG 62.305 60.000 0.00 0.00 0.00 6.13
119 120 0.814010 GTATCCATCCACACACGCCC 60.814 60.000 0.00 0.00 0.00 6.13
120 121 1.151777 CGTATCCATCCACACACGCC 61.152 60.000 0.00 0.00 0.00 5.68
121 122 0.459585 ACGTATCCATCCACACACGC 60.460 55.000 0.00 0.00 32.90 5.34
122 123 1.277326 CACGTATCCATCCACACACG 58.723 55.000 0.00 0.00 35.62 4.49
123 124 1.006832 GCACGTATCCATCCACACAC 58.993 55.000 0.00 0.00 0.00 3.82
124 125 0.610687 TGCACGTATCCATCCACACA 59.389 50.000 0.00 0.00 0.00 3.72
125 126 1.290203 CTGCACGTATCCATCCACAC 58.710 55.000 0.00 0.00 0.00 3.82
126 127 0.177836 CCTGCACGTATCCATCCACA 59.822 55.000 0.00 0.00 0.00 4.17
127 128 0.464036 TCCTGCACGTATCCATCCAC 59.536 55.000 0.00 0.00 0.00 4.02
128 129 1.070601 CATCCTGCACGTATCCATCCA 59.929 52.381 0.00 0.00 0.00 3.41
129 130 1.344438 TCATCCTGCACGTATCCATCC 59.656 52.381 0.00 0.00 0.00 3.51
130 131 2.820059 TCATCCTGCACGTATCCATC 57.180 50.000 0.00 0.00 0.00 3.51
131 132 2.873245 GCATCATCCTGCACGTATCCAT 60.873 50.000 0.00 0.00 41.87 3.41
132 133 1.541015 GCATCATCCTGCACGTATCCA 60.541 52.381 0.00 0.00 41.87 3.41
133 134 1.151668 GCATCATCCTGCACGTATCC 58.848 55.000 0.00 0.00 41.87 2.59
134 135 1.151668 GGCATCATCCTGCACGTATC 58.848 55.000 0.00 0.00 44.12 2.24
135 136 0.601046 CGGCATCATCCTGCACGTAT 60.601 55.000 0.00 0.00 44.12 3.06
136 137 1.227234 CGGCATCATCCTGCACGTA 60.227 57.895 0.00 0.00 44.12 3.57
137 138 2.512286 CGGCATCATCCTGCACGT 60.512 61.111 0.00 0.00 44.12 4.49
138 139 2.108514 AACGGCATCATCCTGCACG 61.109 57.895 0.00 2.55 44.12 5.34
139 140 1.308069 ACAACGGCATCATCCTGCAC 61.308 55.000 0.00 0.00 44.12 4.57
140 141 1.002257 ACAACGGCATCATCCTGCA 60.002 52.632 0.00 0.00 44.12 4.41
141 142 0.745845 AGACAACGGCATCATCCTGC 60.746 55.000 0.00 0.00 41.53 4.85
142 143 1.012086 CAGACAACGGCATCATCCTG 58.988 55.000 0.00 0.00 0.00 3.86
143 144 0.107508 CCAGACAACGGCATCATCCT 60.108 55.000 0.00 0.00 0.00 3.24
144 145 2.397751 CCAGACAACGGCATCATCC 58.602 57.895 0.00 0.00 0.00 3.51
169 170 3.850098 AACCTTGCCAGGCCTGTCG 62.850 63.158 30.63 17.77 45.56 4.35
170 171 2.116125 AACCTTGCCAGGCCTGTC 59.884 61.111 30.63 20.39 45.56 3.51
171 172 2.203538 CAACCTTGCCAGGCCTGT 60.204 61.111 30.63 8.87 45.56 4.00
172 173 2.993264 CCAACCTTGCCAGGCCTG 60.993 66.667 26.87 26.87 45.56 4.85
173 174 3.511610 ACCAACCTTGCCAGGCCT 61.512 61.111 9.64 0.00 45.56 5.19
174 175 3.305516 CACCAACCTTGCCAGGCC 61.306 66.667 9.64 0.00 45.56 5.19
175 176 3.994853 GCACCAACCTTGCCAGGC 61.995 66.667 3.66 3.66 45.56 4.85
177 178 2.906897 ACGCACCAACCTTGCCAG 60.907 61.111 0.00 0.00 36.57 4.85
178 179 2.904866 GACGCACCAACCTTGCCA 60.905 61.111 0.00 0.00 36.57 4.92
179 180 2.904866 TGACGCACCAACCTTGCC 60.905 61.111 0.00 0.00 36.57 4.52
180 181 0.882927 TACTGACGCACCAACCTTGC 60.883 55.000 0.00 0.00 36.57 4.01
181 182 0.865769 GTACTGACGCACCAACCTTG 59.134 55.000 0.00 0.00 0.00 3.61
182 183 0.250166 GGTACTGACGCACCAACCTT 60.250 55.000 0.00 0.00 34.77 3.50
183 184 1.119574 AGGTACTGACGCACCAACCT 61.120 55.000 0.00 0.00 37.18 3.50
184 185 1.370064 AGGTACTGACGCACCAACC 59.630 57.895 0.00 0.00 37.18 3.77
196 197 4.662278 GATCCATCTCTAGAGCAGGTACT 58.338 47.826 22.15 12.81 43.88 2.73
197 198 3.438781 CGATCCATCTCTAGAGCAGGTAC 59.561 52.174 22.15 17.29 0.00 3.34
198 199 3.560239 CCGATCCATCTCTAGAGCAGGTA 60.560 52.174 22.15 13.57 0.00 3.08
199 200 2.513753 CGATCCATCTCTAGAGCAGGT 58.486 52.381 22.15 13.75 0.00 4.00
200 201 1.818060 CCGATCCATCTCTAGAGCAGG 59.182 57.143 15.35 17.50 0.00 4.85
201 202 2.228582 CACCGATCCATCTCTAGAGCAG 59.771 54.545 15.35 9.32 0.00 4.24
202 203 2.234143 CACCGATCCATCTCTAGAGCA 58.766 52.381 15.35 4.70 0.00 4.26
203 204 2.235016 ACACCGATCCATCTCTAGAGC 58.765 52.381 15.35 0.00 0.00 4.09
204 205 5.180492 GTCTTACACCGATCCATCTCTAGAG 59.820 48.000 13.98 13.98 0.00 2.43
205 206 5.064558 GTCTTACACCGATCCATCTCTAGA 58.935 45.833 0.00 0.00 0.00 2.43
206 207 4.083749 CGTCTTACACCGATCCATCTCTAG 60.084 50.000 0.00 0.00 0.00 2.43
207 208 3.813724 CGTCTTACACCGATCCATCTCTA 59.186 47.826 0.00 0.00 0.00 2.43
208 209 2.619177 CGTCTTACACCGATCCATCTCT 59.381 50.000 0.00 0.00 0.00 3.10
209 210 2.287668 CCGTCTTACACCGATCCATCTC 60.288 54.545 0.00 0.00 0.00 2.75
210 211 1.681793 CCGTCTTACACCGATCCATCT 59.318 52.381 0.00 0.00 0.00 2.90
211 212 1.868519 GCCGTCTTACACCGATCCATC 60.869 57.143 0.00 0.00 0.00 3.51
212 213 0.104304 GCCGTCTTACACCGATCCAT 59.896 55.000 0.00 0.00 0.00 3.41
213 214 1.514087 GCCGTCTTACACCGATCCA 59.486 57.895 0.00 0.00 0.00 3.41
214 215 1.588139 CGCCGTCTTACACCGATCC 60.588 63.158 0.00 0.00 0.00 3.36
215 216 1.588139 CCGCCGTCTTACACCGATC 60.588 63.158 0.00 0.00 0.00 3.69
216 217 2.493030 CCGCCGTCTTACACCGAT 59.507 61.111 0.00 0.00 0.00 4.18
217 218 4.424566 GCCGCCGTCTTACACCGA 62.425 66.667 0.00 0.00 0.00 4.69
218 219 4.728102 TGCCGCCGTCTTACACCG 62.728 66.667 0.00 0.00 0.00 4.94
219 220 2.813908 CTGCCGCCGTCTTACACC 60.814 66.667 0.00 0.00 0.00 4.16
220 221 3.488090 GCTGCCGCCGTCTTACAC 61.488 66.667 0.00 0.00 0.00 2.90
222 223 4.789075 TCGCTGCCGCCGTCTTAC 62.789 66.667 0.00 0.00 0.00 2.34
223 224 4.789075 GTCGCTGCCGCCGTCTTA 62.789 66.667 0.00 0.00 0.00 2.10
229 230 4.143333 TTAGAGGTCGCTGCCGCC 62.143 66.667 0.00 0.00 0.00 6.13
230 231 2.583593 CTTAGAGGTCGCTGCCGC 60.584 66.667 0.00 0.00 0.00 6.53
231 232 1.064946 CTCTTAGAGGTCGCTGCCG 59.935 63.158 0.41 0.00 0.00 5.69
232 233 0.179124 CACTCTTAGAGGTCGCTGCC 60.179 60.000 14.24 0.00 33.35 4.85
233 234 0.804156 GCACTCTTAGAGGTCGCTGC 60.804 60.000 14.24 9.80 33.35 5.25
234 235 0.524392 CGCACTCTTAGAGGTCGCTG 60.524 60.000 14.24 3.47 33.35 5.18
235 236 0.961358 ACGCACTCTTAGAGGTCGCT 60.961 55.000 19.50 8.86 34.02 4.93
236 237 0.523757 GACGCACTCTTAGAGGTCGC 60.524 60.000 19.50 14.72 34.02 5.19
237 238 0.247735 CGACGCACTCTTAGAGGTCG 60.248 60.000 19.21 19.21 36.31 4.79
238 239 0.099082 CCGACGCACTCTTAGAGGTC 59.901 60.000 14.24 10.06 33.35 3.85
239 240 0.322277 TCCGACGCACTCTTAGAGGT 60.322 55.000 14.24 1.74 33.35 3.85
240 241 0.099082 GTCCGACGCACTCTTAGAGG 59.901 60.000 14.24 3.97 33.35 3.69
241 242 0.099082 GGTCCGACGCACTCTTAGAG 59.901 60.000 7.82 7.82 35.52 2.43
242 243 1.642037 CGGTCCGACGCACTCTTAGA 61.642 60.000 4.91 0.00 0.00 2.10
243 244 1.226323 CGGTCCGACGCACTCTTAG 60.226 63.158 4.91 0.00 0.00 2.18
244 245 2.693762 CCGGTCCGACGCACTCTTA 61.694 63.158 14.39 0.00 0.00 2.10
245 246 4.052229 CCGGTCCGACGCACTCTT 62.052 66.667 14.39 0.00 0.00 2.85
246 247 3.907260 TACCGGTCCGACGCACTCT 62.907 63.158 12.40 0.00 0.00 3.24
247 248 3.434319 TACCGGTCCGACGCACTC 61.434 66.667 12.40 0.00 0.00 3.51
248 249 3.741476 GTACCGGTCCGACGCACT 61.741 66.667 12.40 0.00 0.00 4.40
252 253 3.422303 TCACGTACCGGTCCGACG 61.422 66.667 27.31 25.05 42.22 5.12
253 254 2.176792 GTCACGTACCGGTCCGAC 59.823 66.667 27.31 16.86 0.00 4.79
254 255 3.055719 GGTCACGTACCGGTCCGA 61.056 66.667 27.31 8.81 38.88 4.55
266 267 3.268103 AATGCCGGGACTGGGTCAC 62.268 63.158 2.18 0.00 33.68 3.67
267 268 2.933287 AATGCCGGGACTGGGTCA 60.933 61.111 2.18 0.00 33.68 4.02
268 269 2.438434 CAATGCCGGGACTGGGTC 60.438 66.667 2.18 0.00 0.00 4.46
269 270 3.256960 ACAATGCCGGGACTGGGT 61.257 61.111 9.81 0.00 0.00 4.51
270 271 2.751436 CACAATGCCGGGACTGGG 60.751 66.667 9.81 0.00 0.00 4.45
271 272 2.751436 CCACAATGCCGGGACTGG 60.751 66.667 9.81 5.55 0.00 4.00
272 273 3.443045 GCCACAATGCCGGGACTG 61.443 66.667 1.71 1.71 0.00 3.51
273 274 3.210012 AAGCCACAATGCCGGGACT 62.210 57.895 2.18 0.00 0.00 3.85
274 275 2.676471 AAGCCACAATGCCGGGAC 60.676 61.111 2.18 0.00 0.00 4.46
275 276 2.676121 CAAGCCACAATGCCGGGA 60.676 61.111 2.18 0.00 0.00 5.14
276 277 3.762247 CCAAGCCACAATGCCGGG 61.762 66.667 2.18 0.00 0.00 5.73
277 278 4.440127 GCCAAGCCACAATGCCGG 62.440 66.667 0.00 0.00 0.00 6.13
278 279 3.376078 AGCCAAGCCACAATGCCG 61.376 61.111 0.00 0.00 0.00 5.69
279 280 2.263540 CAGCCAAGCCACAATGCC 59.736 61.111 0.00 0.00 0.00 4.40
280 281 2.263540 CCAGCCAAGCCACAATGC 59.736 61.111 0.00 0.00 0.00 3.56
281 282 2.652095 CCCCAGCCAAGCCACAATG 61.652 63.158 0.00 0.00 0.00 2.82
282 283 2.284112 CCCCAGCCAAGCCACAAT 60.284 61.111 0.00 0.00 0.00 2.71
286 287 4.764771 GATGCCCCAGCCAAGCCA 62.765 66.667 0.00 0.00 38.69 4.75
293 294 3.714487 TAAAGCCGGATGCCCCAGC 62.714 63.158 5.05 0.00 42.71 4.85
294 295 0.682855 TTTAAAGCCGGATGCCCCAG 60.683 55.000 5.05 0.00 42.71 4.45
295 296 0.032615 ATTTAAAGCCGGATGCCCCA 60.033 50.000 5.05 0.00 42.71 4.96
296 297 0.389025 CATTTAAAGCCGGATGCCCC 59.611 55.000 5.05 0.00 42.71 5.80
297 298 1.111277 ACATTTAAAGCCGGATGCCC 58.889 50.000 5.05 0.00 42.71 5.36
298 299 2.959507 AACATTTAAAGCCGGATGCC 57.040 45.000 5.05 0.00 42.71 4.40
299 300 4.335594 AGTCTAACATTTAAAGCCGGATGC 59.664 41.667 5.05 0.00 41.71 3.91
300 301 6.436843 AAGTCTAACATTTAAAGCCGGATG 57.563 37.500 5.05 0.22 0.00 3.51
301 302 6.127730 CCAAAGTCTAACATTTAAAGCCGGAT 60.128 38.462 5.05 0.00 0.00 4.18
302 303 5.182380 CCAAAGTCTAACATTTAAAGCCGGA 59.818 40.000 5.05 0.00 0.00 5.14
303 304 5.048294 ACCAAAGTCTAACATTTAAAGCCGG 60.048 40.000 0.00 0.00 0.00 6.13
304 305 5.856455 CACCAAAGTCTAACATTTAAAGCCG 59.144 40.000 0.00 0.00 0.00 5.52
305 306 5.633601 GCACCAAAGTCTAACATTTAAAGCC 59.366 40.000 0.00 0.00 0.00 4.35
306 307 5.342259 CGCACCAAAGTCTAACATTTAAAGC 59.658 40.000 0.00 0.00 0.00 3.51
307 308 6.664515 TCGCACCAAAGTCTAACATTTAAAG 58.335 36.000 0.00 0.00 0.00 1.85
308 309 6.621316 TCGCACCAAAGTCTAACATTTAAA 57.379 33.333 0.00 0.00 0.00 1.52
309 310 6.205853 ACATCGCACCAAAGTCTAACATTTAA 59.794 34.615 0.00 0.00 0.00 1.52
310 311 5.703592 ACATCGCACCAAAGTCTAACATTTA 59.296 36.000 0.00 0.00 0.00 1.40
311 312 4.518970 ACATCGCACCAAAGTCTAACATTT 59.481 37.500 0.00 0.00 0.00 2.32
312 313 4.072131 ACATCGCACCAAAGTCTAACATT 58.928 39.130 0.00 0.00 0.00 2.71
313 314 3.674997 ACATCGCACCAAAGTCTAACAT 58.325 40.909 0.00 0.00 0.00 2.71
314 315 3.064207 GACATCGCACCAAAGTCTAACA 58.936 45.455 0.00 0.00 0.00 2.41
315 316 3.123621 CAGACATCGCACCAAAGTCTAAC 59.876 47.826 0.00 0.00 37.45 2.34
316 317 3.244078 ACAGACATCGCACCAAAGTCTAA 60.244 43.478 0.00 0.00 37.45 2.10
317 318 2.299013 ACAGACATCGCACCAAAGTCTA 59.701 45.455 0.00 0.00 37.45 2.59
318 319 1.070758 ACAGACATCGCACCAAAGTCT 59.929 47.619 0.00 0.00 39.95 3.24
319 320 1.512926 ACAGACATCGCACCAAAGTC 58.487 50.000 0.00 0.00 0.00 3.01
320 321 1.967319 AACAGACATCGCACCAAAGT 58.033 45.000 0.00 0.00 0.00 2.66
321 322 2.605338 CCAAACAGACATCGCACCAAAG 60.605 50.000 0.00 0.00 0.00 2.77
322 323 1.336440 CCAAACAGACATCGCACCAAA 59.664 47.619 0.00 0.00 0.00 3.28
323 324 0.950836 CCAAACAGACATCGCACCAA 59.049 50.000 0.00 0.00 0.00 3.67
324 325 0.179032 ACCAAACAGACATCGCACCA 60.179 50.000 0.00 0.00 0.00 4.17
325 326 1.803334 TACCAAACAGACATCGCACC 58.197 50.000 0.00 0.00 0.00 5.01
326 327 3.483574 CGAATACCAAACAGACATCGCAC 60.484 47.826 0.00 0.00 0.00 5.34
327 328 2.670905 CGAATACCAAACAGACATCGCA 59.329 45.455 0.00 0.00 0.00 5.10
328 329 2.030457 CCGAATACCAAACAGACATCGC 59.970 50.000 0.00 0.00 0.00 4.58
329 330 3.259064 ACCGAATACCAAACAGACATCG 58.741 45.455 0.00 0.00 0.00 3.84
330 331 4.201685 CGAACCGAATACCAAACAGACATC 60.202 45.833 0.00 0.00 0.00 3.06
331 332 3.682858 CGAACCGAATACCAAACAGACAT 59.317 43.478 0.00 0.00 0.00 3.06
332 333 3.061322 CGAACCGAATACCAAACAGACA 58.939 45.455 0.00 0.00 0.00 3.41
333 334 2.414138 CCGAACCGAATACCAAACAGAC 59.586 50.000 0.00 0.00 0.00 3.51
334 335 2.299582 TCCGAACCGAATACCAAACAGA 59.700 45.455 0.00 0.00 0.00 3.41
335 336 2.414138 GTCCGAACCGAATACCAAACAG 59.586 50.000 0.00 0.00 0.00 3.16
336 337 2.224233 TGTCCGAACCGAATACCAAACA 60.224 45.455 0.00 0.00 0.00 2.83
337 338 2.415776 TGTCCGAACCGAATACCAAAC 58.584 47.619 0.00 0.00 0.00 2.93
338 339 2.835580 TGTCCGAACCGAATACCAAA 57.164 45.000 0.00 0.00 0.00 3.28
339 340 2.498481 AGATGTCCGAACCGAATACCAA 59.502 45.455 0.00 0.00 0.00 3.67
340 341 2.104967 AGATGTCCGAACCGAATACCA 58.895 47.619 0.00 0.00 0.00 3.25
341 342 2.470821 CAGATGTCCGAACCGAATACC 58.529 52.381 0.00 0.00 0.00 2.73
342 343 1.859080 GCAGATGTCCGAACCGAATAC 59.141 52.381 0.00 0.00 0.00 1.89
343 344 1.478916 TGCAGATGTCCGAACCGAATA 59.521 47.619 0.00 0.00 0.00 1.75
344 345 0.249120 TGCAGATGTCCGAACCGAAT 59.751 50.000 0.00 0.00 0.00 3.34
345 346 0.249120 ATGCAGATGTCCGAACCGAA 59.751 50.000 0.00 0.00 0.00 4.30
346 347 0.179111 GATGCAGATGTCCGAACCGA 60.179 55.000 0.00 0.00 0.00 4.69
347 348 1.154205 GGATGCAGATGTCCGAACCG 61.154 60.000 0.00 0.00 0.00 4.44
348 349 0.815615 GGGATGCAGATGTCCGAACC 60.816 60.000 0.00 0.00 35.28 3.62
349 350 0.179000 AGGGATGCAGATGTCCGAAC 59.821 55.000 0.00 0.00 35.28 3.95
350 351 0.911769 AAGGGATGCAGATGTCCGAA 59.088 50.000 0.00 0.00 35.28 4.30
351 352 0.465705 GAAGGGATGCAGATGTCCGA 59.534 55.000 0.00 0.00 35.28 4.55
352 353 0.178767 TGAAGGGATGCAGATGTCCG 59.821 55.000 0.00 0.00 35.28 4.79
353 354 2.158711 TGATGAAGGGATGCAGATGTCC 60.159 50.000 0.00 0.00 0.00 4.02
354 355 3.204306 TGATGAAGGGATGCAGATGTC 57.796 47.619 0.00 0.00 0.00 3.06
355 356 3.552875 CTTGATGAAGGGATGCAGATGT 58.447 45.455 0.00 0.00 0.00 3.06
356 357 2.885266 CCTTGATGAAGGGATGCAGATG 59.115 50.000 2.47 0.00 44.76 2.90
357 358 3.225177 CCTTGATGAAGGGATGCAGAT 57.775 47.619 2.47 0.00 44.76 2.90
358 359 2.723322 CCTTGATGAAGGGATGCAGA 57.277 50.000 2.47 0.00 44.76 4.26
367 368 6.016693 TCGCTACTCTTATCTCCTTGATGAAG 60.017 42.308 0.00 0.00 36.65 3.02
368 369 5.828328 TCGCTACTCTTATCTCCTTGATGAA 59.172 40.000 0.00 0.00 36.65 2.57
369 370 5.377478 TCGCTACTCTTATCTCCTTGATGA 58.623 41.667 0.00 0.00 36.65 2.92
370 371 5.471797 TCTCGCTACTCTTATCTCCTTGATG 59.528 44.000 0.00 0.00 36.65 3.07
371 372 5.626142 TCTCGCTACTCTTATCTCCTTGAT 58.374 41.667 0.00 0.00 39.11 2.57
372 373 5.037383 TCTCGCTACTCTTATCTCCTTGA 57.963 43.478 0.00 0.00 0.00 3.02
373 374 4.215399 CCTCTCGCTACTCTTATCTCCTTG 59.785 50.000 0.00 0.00 0.00 3.61
374 375 4.141344 ACCTCTCGCTACTCTTATCTCCTT 60.141 45.833 0.00 0.00 0.00 3.36
375 376 3.393278 ACCTCTCGCTACTCTTATCTCCT 59.607 47.826 0.00 0.00 0.00 3.69
376 377 3.500680 CACCTCTCGCTACTCTTATCTCC 59.499 52.174 0.00 0.00 0.00 3.71
377 378 4.131596 ACACCTCTCGCTACTCTTATCTC 58.868 47.826 0.00 0.00 0.00 2.75
378 379 4.159244 ACACCTCTCGCTACTCTTATCT 57.841 45.455 0.00 0.00 0.00 1.98
379 380 4.602995 CAACACCTCTCGCTACTCTTATC 58.397 47.826 0.00 0.00 0.00 1.75
380 381 3.181485 GCAACACCTCTCGCTACTCTTAT 60.181 47.826 0.00 0.00 0.00 1.73
381 382 2.163815 GCAACACCTCTCGCTACTCTTA 59.836 50.000 0.00 0.00 0.00 2.10
382 383 1.067495 GCAACACCTCTCGCTACTCTT 60.067 52.381 0.00 0.00 0.00 2.85
383 384 0.528470 GCAACACCTCTCGCTACTCT 59.472 55.000 0.00 0.00 0.00 3.24
384 385 0.458716 GGCAACACCTCTCGCTACTC 60.459 60.000 0.00 0.00 34.51 2.59
385 386 1.185618 TGGCAACACCTCTCGCTACT 61.186 55.000 0.00 0.00 46.17 2.57
386 387 1.292223 TGGCAACACCTCTCGCTAC 59.708 57.895 0.00 0.00 46.17 3.58
387 388 3.785982 TGGCAACACCTCTCGCTA 58.214 55.556 0.00 0.00 46.17 4.26
394 395 7.560379 TGAAGCTATCATCTTGGCAACACCT 62.560 44.000 0.00 0.00 39.09 4.00
395 396 5.402562 TGAAGCTATCATCTTGGCAACACC 61.403 45.833 0.00 0.00 39.09 4.16
396 397 3.691118 TGAAGCTATCATCTTGGCAACAC 59.309 43.478 0.00 0.00 39.09 3.32
397 398 3.954200 TGAAGCTATCATCTTGGCAACA 58.046 40.909 0.00 0.00 37.88 3.33
398 399 4.792057 GCATGAAGCTATCATCTTGGCAAC 60.792 45.833 0.00 0.00 45.91 4.17
399 400 3.317149 GCATGAAGCTATCATCTTGGCAA 59.683 43.478 0.00 0.00 45.91 4.52
400 401 2.882761 GCATGAAGCTATCATCTTGGCA 59.117 45.455 0.00 0.00 45.91 4.92
401 402 3.555917 GCATGAAGCTATCATCTTGGC 57.444 47.619 0.00 6.05 45.91 4.52
413 414 8.649973 AAGTAGTACATAAGTAAGCATGAAGC 57.350 34.615 2.52 0.00 46.19 3.86
415 416 9.938280 ACAAAGTAGTACATAAGTAAGCATGAA 57.062 29.630 2.52 0.00 30.67 2.57
416 417 9.366216 CACAAAGTAGTACATAAGTAAGCATGA 57.634 33.333 2.52 0.00 30.67 3.07
417 418 8.604035 CCACAAAGTAGTACATAAGTAAGCATG 58.396 37.037 2.52 0.00 30.67 4.06
418 419 8.537016 TCCACAAAGTAGTACATAAGTAAGCAT 58.463 33.333 2.52 0.00 30.67 3.79
419 420 7.898918 TCCACAAAGTAGTACATAAGTAAGCA 58.101 34.615 2.52 0.00 30.67 3.91
420 421 8.943909 ATCCACAAAGTAGTACATAAGTAAGC 57.056 34.615 2.52 0.00 30.67 3.09
437 438 9.323985 GCAGCCATTTTAATAATTATCCACAAA 57.676 29.630 0.00 0.00 0.00 2.83
438 439 8.703743 AGCAGCCATTTTAATAATTATCCACAA 58.296 29.630 0.00 0.00 0.00 3.33
439 440 8.143193 CAGCAGCCATTTTAATAATTATCCACA 58.857 33.333 0.00 0.00 0.00 4.17
440 441 8.359642 TCAGCAGCCATTTTAATAATTATCCAC 58.640 33.333 0.00 0.00 0.00 4.02
441 442 8.476064 TCAGCAGCCATTTTAATAATTATCCA 57.524 30.769 0.00 0.00 0.00 3.41
442 443 9.362539 CATCAGCAGCCATTTTAATAATTATCC 57.637 33.333 0.00 0.00 0.00 2.59
443 444 9.918630 ACATCAGCAGCCATTTTAATAATTATC 57.081 29.630 0.00 0.00 0.00 1.75
444 445 9.701098 CACATCAGCAGCCATTTTAATAATTAT 57.299 29.630 0.00 0.00 0.00 1.28
445 446 8.911965 TCACATCAGCAGCCATTTTAATAATTA 58.088 29.630 0.00 0.00 0.00 1.40
446 447 7.784037 TCACATCAGCAGCCATTTTAATAATT 58.216 30.769 0.00 0.00 0.00 1.40
447 448 7.350744 TCACATCAGCAGCCATTTTAATAAT 57.649 32.000 0.00 0.00 0.00 1.28
448 449 6.772360 TCACATCAGCAGCCATTTTAATAA 57.228 33.333 0.00 0.00 0.00 1.40
449 450 6.405731 GGTTCACATCAGCAGCCATTTTAATA 60.406 38.462 0.00 0.00 0.00 0.98
450 451 5.413499 GTTCACATCAGCAGCCATTTTAAT 58.587 37.500 0.00 0.00 0.00 1.40
451 452 4.321899 GGTTCACATCAGCAGCCATTTTAA 60.322 41.667 0.00 0.00 0.00 1.52
452 453 3.193267 GGTTCACATCAGCAGCCATTTTA 59.807 43.478 0.00 0.00 0.00 1.52
453 454 2.028748 GGTTCACATCAGCAGCCATTTT 60.029 45.455 0.00 0.00 0.00 1.82
454 455 1.547372 GGTTCACATCAGCAGCCATTT 59.453 47.619 0.00 0.00 0.00 2.32
455 456 1.180029 GGTTCACATCAGCAGCCATT 58.820 50.000 0.00 0.00 0.00 3.16
456 457 0.330604 AGGTTCACATCAGCAGCCAT 59.669 50.000 0.00 0.00 0.00 4.40
457 458 0.983467 TAGGTTCACATCAGCAGCCA 59.017 50.000 0.00 0.00 0.00 4.75
458 459 2.113860 TTAGGTTCACATCAGCAGCC 57.886 50.000 0.00 0.00 0.00 4.85
459 460 2.421424 CCTTTAGGTTCACATCAGCAGC 59.579 50.000 0.00 0.00 0.00 5.25
473 474 3.924686 CGCAGTACACTACAACCTTTAGG 59.075 47.826 0.00 0.00 42.17 2.69
474 475 3.924686 CCGCAGTACACTACAACCTTTAG 59.075 47.826 0.00 0.00 0.00 1.85
475 476 3.306225 CCCGCAGTACACTACAACCTTTA 60.306 47.826 0.00 0.00 0.00 1.85
476 477 2.549349 CCCGCAGTACACTACAACCTTT 60.549 50.000 0.00 0.00 0.00 3.11
477 478 1.001633 CCCGCAGTACACTACAACCTT 59.998 52.381 0.00 0.00 0.00 3.50
478 479 0.606604 CCCGCAGTACACTACAACCT 59.393 55.000 0.00 0.00 0.00 3.50
479 480 1.017701 GCCCGCAGTACACTACAACC 61.018 60.000 0.00 0.00 0.00 3.77
480 481 0.037605 AGCCCGCAGTACACTACAAC 60.038 55.000 0.00 0.00 0.00 3.32
481 482 0.245539 GAGCCCGCAGTACACTACAA 59.754 55.000 0.00 0.00 0.00 2.41
482 483 1.601419 GGAGCCCGCAGTACACTACA 61.601 60.000 0.00 0.00 0.00 2.74
483 484 1.141234 GGAGCCCGCAGTACACTAC 59.859 63.158 0.00 0.00 0.00 2.73
484 485 2.412323 CGGAGCCCGCAGTACACTA 61.412 63.158 0.00 0.00 41.17 2.74
485 486 3.760035 CGGAGCCCGCAGTACACT 61.760 66.667 0.00 0.00 41.17 3.55
486 487 4.814294 CCGGAGCCCGCAGTACAC 62.814 72.222 0.00 0.00 46.86 2.90
488 489 4.814294 CACCGGAGCCCGCAGTAC 62.814 72.222 9.46 0.00 46.86 2.73
495 496 2.125106 CTACAAGCACCGGAGCCC 60.125 66.667 20.91 0.00 34.23 5.19
496 497 2.125106 CCTACAAGCACCGGAGCC 60.125 66.667 20.91 2.64 34.23 4.70
497 498 2.820037 GCCTACAAGCACCGGAGC 60.820 66.667 16.88 16.88 0.00 4.70
498 499 2.662596 TGCCTACAAGCACCGGAG 59.337 61.111 9.46 0.00 38.00 4.63
504 505 1.065926 CCAGATCTGTGCCTACAAGCA 60.066 52.381 21.11 0.00 41.46 3.91
505 506 1.208052 TCCAGATCTGTGCCTACAAGC 59.792 52.381 21.11 0.00 36.14 4.01
506 507 3.118482 ACATCCAGATCTGTGCCTACAAG 60.118 47.826 21.11 2.94 36.14 3.16
507 508 2.840038 ACATCCAGATCTGTGCCTACAA 59.160 45.455 21.11 0.00 36.14 2.41
508 509 2.470990 ACATCCAGATCTGTGCCTACA 58.529 47.619 21.11 0.00 35.08 2.74
509 510 3.639094 ACTACATCCAGATCTGTGCCTAC 59.361 47.826 21.11 0.00 0.00 3.18
510 511 3.916035 ACTACATCCAGATCTGTGCCTA 58.084 45.455 21.11 4.91 0.00 3.93
511 512 2.756907 ACTACATCCAGATCTGTGCCT 58.243 47.619 21.11 3.99 0.00 4.75
512 513 3.550437 AACTACATCCAGATCTGTGCC 57.450 47.619 21.11 0.00 0.00 5.01
513 514 5.634896 CAAAAACTACATCCAGATCTGTGC 58.365 41.667 21.11 0.00 0.00 4.57
514 515 5.413833 AGCAAAAACTACATCCAGATCTGTG 59.586 40.000 21.11 15.65 0.00 3.66
515 516 5.564550 AGCAAAAACTACATCCAGATCTGT 58.435 37.500 21.11 6.28 0.00 3.41
516 517 6.506500 AAGCAAAAACTACATCCAGATCTG 57.493 37.500 16.24 16.24 0.00 2.90
517 518 7.231317 TCAAAAGCAAAAACTACATCCAGATCT 59.769 33.333 0.00 0.00 0.00 2.75
518 519 7.370383 TCAAAAGCAAAAACTACATCCAGATC 58.630 34.615 0.00 0.00 0.00 2.75
519 520 7.288810 TCAAAAGCAAAAACTACATCCAGAT 57.711 32.000 0.00 0.00 0.00 2.90
520 521 6.707440 TCAAAAGCAAAAACTACATCCAGA 57.293 33.333 0.00 0.00 0.00 3.86
521 522 6.925165 ACATCAAAAGCAAAAACTACATCCAG 59.075 34.615 0.00 0.00 0.00 3.86
522 523 6.700960 CACATCAAAAGCAAAAACTACATCCA 59.299 34.615 0.00 0.00 0.00 3.41
523 524 6.346838 GCACATCAAAAGCAAAAACTACATCC 60.347 38.462 0.00 0.00 0.00 3.51
524 525 6.421801 AGCACATCAAAAGCAAAAACTACATC 59.578 34.615 0.00 0.00 0.00 3.06
525 526 6.282930 AGCACATCAAAAGCAAAAACTACAT 58.717 32.000 0.00 0.00 0.00 2.29
526 527 5.659463 AGCACATCAAAAGCAAAAACTACA 58.341 33.333 0.00 0.00 0.00 2.74
527 528 6.588348 AAGCACATCAAAAGCAAAAACTAC 57.412 33.333 0.00 0.00 0.00 2.73
528 529 6.593382 ACAAAGCACATCAAAAGCAAAAACTA 59.407 30.769 0.00 0.00 0.00 2.24
529 530 5.412286 ACAAAGCACATCAAAAGCAAAAACT 59.588 32.000 0.00 0.00 0.00 2.66
530 531 5.630061 ACAAAGCACATCAAAAGCAAAAAC 58.370 33.333 0.00 0.00 0.00 2.43
531 532 5.876612 ACAAAGCACATCAAAAGCAAAAA 57.123 30.435 0.00 0.00 0.00 1.94
532 533 6.105333 AGTACAAAGCACATCAAAAGCAAAA 58.895 32.000 0.00 0.00 0.00 2.44
533 534 5.659463 AGTACAAAGCACATCAAAAGCAAA 58.341 33.333 0.00 0.00 0.00 3.68
534 535 5.261209 AGTACAAAGCACATCAAAAGCAA 57.739 34.783 0.00 0.00 0.00 3.91
535 536 4.916983 AGTACAAAGCACATCAAAAGCA 57.083 36.364 0.00 0.00 0.00 3.91
536 537 6.002062 ACTAGTACAAAGCACATCAAAAGC 57.998 37.500 0.00 0.00 0.00 3.51
537 538 8.311650 AGTACTAGTACAAAGCACATCAAAAG 57.688 34.615 29.87 0.00 38.48 2.27
538 539 9.938280 ATAGTACTAGTACAAAGCACATCAAAA 57.062 29.630 29.87 0.00 38.48 2.44
539 540 9.582431 GATAGTACTAGTACAAAGCACATCAAA 57.418 33.333 29.87 4.37 38.48 2.69
540 541 8.967918 AGATAGTACTAGTACAAAGCACATCAA 58.032 33.333 29.87 5.57 38.48 2.57
541 542 8.521170 AGATAGTACTAGTACAAAGCACATCA 57.479 34.615 29.87 6.60 38.48 3.07
588 589 6.058183 TGAGCTGCTTTCTTTTAGAGACTTT 58.942 36.000 2.53 0.00 33.02 2.66
595 596 3.080319 AGGCTGAGCTGCTTTCTTTTAG 58.920 45.455 2.53 0.00 0.00 1.85
624 625 9.234827 TCATCAAATCATCTGCTAAGAGAAAAA 57.765 29.630 0.00 0.00 35.37 1.94
629 630 7.118535 CCTCATCATCAAATCATCTGCTAAGAG 59.881 40.741 0.00 0.00 35.37 2.85
633 634 6.429521 TCCTCATCATCAAATCATCTGCTA 57.570 37.500 0.00 0.00 0.00 3.49
634 635 5.306114 TCCTCATCATCAAATCATCTGCT 57.694 39.130 0.00 0.00 0.00 4.24
635 636 4.083217 GCTCCTCATCATCAAATCATCTGC 60.083 45.833 0.00 0.00 0.00 4.26
673 674 2.954753 CTCAACGCGGGTGAAGCAC 61.955 63.158 12.47 0.00 34.19 4.40
675 676 3.423154 CCTCAACGCGGGTGAAGC 61.423 66.667 12.47 0.00 0.00 3.86
676 677 2.027625 GTCCTCAACGCGGGTGAAG 61.028 63.158 12.47 7.71 0.00 3.02
677 678 2.029964 GTCCTCAACGCGGGTGAA 59.970 61.111 12.47 0.00 0.00 3.18
678 679 3.998672 GGTCCTCAACGCGGGTGA 61.999 66.667 12.47 12.96 0.00 4.02
855 870 5.408604 GGTTATGTATAAAGAGTGGCCGATG 59.591 44.000 0.00 0.00 0.00 3.84
894 926 3.334910 TGATGGAGGAGGATTGAGCTA 57.665 47.619 0.00 0.00 0.00 3.32
924 956 2.432874 GGAAGGAAGAAGAGCTAGGTCC 59.567 54.545 18.14 4.26 0.00 4.46
954 987 0.821517 TCGTCCCGTATGCAGATTGT 59.178 50.000 0.00 0.00 0.00 2.71
1098 1131 1.617322 TGAGGAACTGCACGTACTCT 58.383 50.000 5.84 0.00 41.55 3.24
1236 1269 2.359975 AGCCACTTAACGCTGGGC 60.360 61.111 0.00 0.00 44.92 5.36
1240 1273 1.296715 CCTCCAGCCACTTAACGCT 59.703 57.895 0.00 0.00 35.10 5.07
1245 1278 1.615424 GTCCCCCTCCAGCCACTTA 60.615 63.158 0.00 0.00 0.00 2.24
1292 1325 2.179517 CGACCTGCTCGTCCTGTC 59.820 66.667 0.00 0.00 37.64 3.51
1325 1358 2.203195 TTCCGCTGCTGCTGTTGT 60.203 55.556 14.03 0.00 36.97 3.32
1358 1391 2.094026 TCATCTTCGTCCTCACACATGG 60.094 50.000 0.00 0.00 0.00 3.66
1372 1408 1.332375 CTCCTCCTCGTCGTCATCTTC 59.668 57.143 0.00 0.00 0.00 2.87
1383 1419 0.523966 GATACGCCATCTCCTCCTCG 59.476 60.000 0.00 0.00 0.00 4.63
1456 1495 3.069158 CCCGATTAATCTTACACCGAGGT 59.931 47.826 13.45 0.00 0.00 3.85
1465 1504 2.298163 GAGGCCGTCCCGATTAATCTTA 59.702 50.000 13.45 0.00 39.21 2.10
1497 1541 4.766891 GCAGCTACCATCTCTAAGATCTCT 59.233 45.833 0.00 0.00 31.32 3.10
1498 1542 4.766891 AGCAGCTACCATCTCTAAGATCTC 59.233 45.833 0.00 0.00 31.32 2.75
1499 1543 4.739793 AGCAGCTACCATCTCTAAGATCT 58.260 43.478 0.00 0.00 31.32 2.75
1500 1544 5.229423 CAAGCAGCTACCATCTCTAAGATC 58.771 45.833 0.00 0.00 31.32 2.75
1501 1545 4.040217 CCAAGCAGCTACCATCTCTAAGAT 59.960 45.833 0.00 0.00 34.74 2.40
1502 1546 3.386078 CCAAGCAGCTACCATCTCTAAGA 59.614 47.826 0.00 0.00 0.00 2.10
1503 1547 3.133721 ACCAAGCAGCTACCATCTCTAAG 59.866 47.826 0.00 0.00 0.00 2.18
1504 1548 3.107601 ACCAAGCAGCTACCATCTCTAA 58.892 45.455 0.00 0.00 0.00 2.10
1505 1549 2.752030 ACCAAGCAGCTACCATCTCTA 58.248 47.619 0.00 0.00 0.00 2.43
1568 1844 5.850557 TCTTTGTTCTTTTTCATCAGGCA 57.149 34.783 0.00 0.00 0.00 4.75
1601 1877 5.197549 CGCATGTGTGACGGATAAAATTAG 58.802 41.667 0.00 0.00 0.00 1.73
1630 1916 0.251354 ACAGAGGCATGCAGTAGTGG 59.749 55.000 21.36 4.26 0.00 4.00
1689 1976 7.286087 TCGTTATACTAGAAAGTAGCAATCCCA 59.714 37.037 0.00 0.00 41.46 4.37
1739 2026 2.990479 CCCTCTACCCAAGCGCTT 59.010 61.111 18.98 18.98 0.00 4.68
1764 2051 7.839680 AGGGATTTTCTGTGTTTTCAGTTAT 57.160 32.000 0.00 0.00 36.85 1.89
1812 2937 6.383415 GTTTGATTTATCTACCGGTTGCAAA 58.617 36.000 15.04 14.60 0.00 3.68
1895 3023 9.331282 GAGTACATGAGATAATAAAAAGCTGGT 57.669 33.333 0.00 0.00 0.00 4.00
2045 5065 7.973944 ACTCTTGCTTGGTTTTACTGTTTTTAG 59.026 33.333 0.00 0.00 0.00 1.85
2054 5074 3.004419 GGGACACTCTTGCTTGGTTTTAC 59.996 47.826 0.00 0.00 0.00 2.01
2093 5121 0.953960 ACGGGAAAACCAGATCGTGC 60.954 55.000 0.00 0.00 40.22 5.34
2124 5152 2.731572 CAGCAACAAGGGGATTGAGAT 58.268 47.619 0.00 0.00 41.83 2.75
2136 5164 0.250252 TCATCCGACAGCAGCAACAA 60.250 50.000 0.00 0.00 0.00 2.83
2137 5165 0.950555 GTCATCCGACAGCAGCAACA 60.951 55.000 0.00 0.00 42.13 3.33
2138 5166 1.790387 GTCATCCGACAGCAGCAAC 59.210 57.895 0.00 0.00 42.13 4.17
2188 5216 2.657237 CCGATACAGATCCGCCCC 59.343 66.667 0.00 0.00 0.00 5.80
2215 5243 1.672356 GTCACCACGCTGCCATCTT 60.672 57.895 0.00 0.00 0.00 2.40
2330 5358 0.108186 GTCGATGATGTGCTGGACCA 60.108 55.000 0.00 0.00 0.00 4.02
2348 5376 2.264794 GTGATGGAACCGAGCCGT 59.735 61.111 0.00 0.00 0.00 5.68
2404 5432 3.369576 GGTAGACGAAGAAGGAAGGCAAT 60.370 47.826 0.00 0.00 0.00 3.56
2415 5443 4.223556 AGATGTCAGAGGTAGACGAAGA 57.776 45.455 0.00 0.00 38.83 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.