Multiple sequence alignment - TraesCS7B01G163000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G163000 chr7B 100.000 5558 0 0 1 5558 223716453 223710896 0.000000e+00 10264.0
1 TraesCS7B01G163000 chr7B 91.255 789 40 14 2363 3149 606360286 606361047 0.000000e+00 1048.0
2 TraesCS7B01G163000 chr7B 90.065 463 17 3 2363 2823 621336696 621337131 1.740000e-159 573.0
3 TraesCS7B01G163000 chr7D 96.833 3315 70 14 561 3856 247317095 247313797 0.000000e+00 5507.0
4 TraesCS7B01G163000 chr7D 94.386 855 42 4 3875 4728 247313737 247312888 0.000000e+00 1308.0
5 TraesCS7B01G163000 chr7D 95.238 378 17 1 154 530 247317467 247317090 1.030000e-166 597.0
6 TraesCS7B01G163000 chr7D 78.365 832 175 5 4729 5558 40265181 40264353 8.200000e-148 534.0
7 TraesCS7B01G163000 chr7A 96.706 2459 46 10 300 2738 264850370 264847927 0.000000e+00 4060.0
8 TraesCS7B01G163000 chr7A 94.338 1148 37 13 2736 3856 264847824 264846678 0.000000e+00 1735.0
9 TraesCS7B01G163000 chr7A 93.852 862 42 3 3875 4728 264846624 264845766 0.000000e+00 1288.0
10 TraesCS7B01G163000 chr7A 95.238 147 7 0 165 311 264850778 264850632 3.350000e-57 233.0
11 TraesCS7B01G163000 chr6B 97.485 835 21 0 4724 5558 415894869 415895703 0.000000e+00 1426.0
12 TraesCS7B01G163000 chr6B 91.001 789 45 13 2363 3149 560659214 560659978 0.000000e+00 1040.0
13 TraesCS7B01G163000 chr6B 93.617 47 3 0 54 100 646438033 646438079 2.780000e-08 71.3
14 TraesCS7B01G163000 chr6B 91.489 47 4 0 54 100 166254421 166254375 1.290000e-06 65.8
15 TraesCS7B01G163000 chr5B 93.727 829 50 1 4730 5558 315934372 315935198 0.000000e+00 1242.0
16 TraesCS7B01G163000 chr4A 94.561 717 34 3 4846 5558 545096058 545096773 0.000000e+00 1103.0
17 TraesCS7B01G163000 chr4A 89.853 680 44 12 2363 3041 730752760 730752105 0.000000e+00 850.0
18 TraesCS7B01G163000 chr4A 95.312 128 5 1 3025 3151 730752087 730751960 9.440000e-48 202.0
19 TraesCS7B01G163000 chr4A 96.000 100 4 0 4730 4829 544955193 544955292 4.460000e-36 163.0
20 TraesCS7B01G163000 chr4A 98.305 59 1 0 4796 4854 544955292 544955350 2.740000e-18 104.0
21 TraesCS7B01G163000 chr3B 91.128 789 43 14 2363 3149 510796075 510795312 0.000000e+00 1044.0
22 TraesCS7B01G163000 chr3B 90.281 463 16 3 2363 2823 733428184 733427749 3.730000e-161 579.0
23 TraesCS7B01G163000 chr3B 86.076 158 18 2 1 154 565729535 565729692 3.440000e-37 167.0
24 TraesCS7B01G163000 chr3A 87.959 789 47 19 2364 3151 575759378 575760119 0.000000e+00 887.0
25 TraesCS7B01G163000 chr3A 89.032 155 16 1 1 154 571411732 571411886 2.040000e-44 191.0
26 TraesCS7B01G163000 chr2A 87.595 790 50 19 2363 3151 746820554 746819812 0.000000e+00 872.0
27 TraesCS7B01G163000 chr2A 87.342 790 52 19 2363 3151 676167847 676167105 0.000000e+00 861.0
28 TraesCS7B01G163000 chr2D 91.993 587 36 7 4730 5315 538282228 538282804 0.000000e+00 813.0
29 TraesCS7B01G163000 chr5A 89.130 460 20 3 2363 2818 324689097 324689530 3.790000e-151 545.0
30 TraesCS7B01G163000 chr1D 89.197 361 37 1 4730 5090 341842797 341843155 3.050000e-122 449.0
31 TraesCS7B01G163000 chr3D 90.968 155 13 1 1 154 433318903 433319057 2.030000e-49 207.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G163000 chr7B 223710896 223716453 5557 True 10264.000000 10264 100.000000 1 5558 1 chr7B.!!$R1 5557
1 TraesCS7B01G163000 chr7B 606360286 606361047 761 False 1048.000000 1048 91.255000 2363 3149 1 chr7B.!!$F1 786
2 TraesCS7B01G163000 chr7D 247312888 247317467 4579 True 2470.666667 5507 95.485667 154 4728 3 chr7D.!!$R2 4574
3 TraesCS7B01G163000 chr7D 40264353 40265181 828 True 534.000000 534 78.365000 4729 5558 1 chr7D.!!$R1 829
4 TraesCS7B01G163000 chr7A 264845766 264850778 5012 True 1829.000000 4060 95.033500 165 4728 4 chr7A.!!$R1 4563
5 TraesCS7B01G163000 chr6B 415894869 415895703 834 False 1426.000000 1426 97.485000 4724 5558 1 chr6B.!!$F1 834
6 TraesCS7B01G163000 chr6B 560659214 560659978 764 False 1040.000000 1040 91.001000 2363 3149 1 chr6B.!!$F2 786
7 TraesCS7B01G163000 chr5B 315934372 315935198 826 False 1242.000000 1242 93.727000 4730 5558 1 chr5B.!!$F1 828
8 TraesCS7B01G163000 chr4A 545096058 545096773 715 False 1103.000000 1103 94.561000 4846 5558 1 chr4A.!!$F1 712
9 TraesCS7B01G163000 chr4A 730751960 730752760 800 True 526.000000 850 92.582500 2363 3151 2 chr4A.!!$R1 788
10 TraesCS7B01G163000 chr3B 510795312 510796075 763 True 1044.000000 1044 91.128000 2363 3149 1 chr3B.!!$R1 786
11 TraesCS7B01G163000 chr3A 575759378 575760119 741 False 887.000000 887 87.959000 2364 3151 1 chr3A.!!$F2 787
12 TraesCS7B01G163000 chr2A 746819812 746820554 742 True 872.000000 872 87.595000 2363 3151 1 chr2A.!!$R2 788
13 TraesCS7B01G163000 chr2A 676167105 676167847 742 True 861.000000 861 87.342000 2363 3151 1 chr2A.!!$R1 788
14 TraesCS7B01G163000 chr2D 538282228 538282804 576 False 813.000000 813 91.993000 4730 5315 1 chr2D.!!$F1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.110486 AGGACCACGGACATTGCTTT 59.890 50.000 0.00 0.0 0.00 3.51 F
151 152 0.539986 TCAAATCCTAGACCCGCCAC 59.460 55.000 0.00 0.0 0.00 5.01 F
152 153 0.541863 CAAATCCTAGACCCGCCACT 59.458 55.000 0.00 0.0 0.00 4.00 F
1642 1936 1.065926 TCGGAAAGCTCTGTCATGCAT 60.066 47.619 0.00 0.0 0.00 3.96 F
3458 3923 1.413077 CCCACTCGTAAGGATTCCTCC 59.587 57.143 5.48 0.0 42.43 4.30 F
4033 4561 0.104409 AGGGACTGGTTGAGAGGGTT 60.104 55.000 0.00 0.0 37.18 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1062 1356 0.119155 AGATTGGGACAGGGAGGACA 59.881 55.0 0.00 0.0 42.39 4.02 R
1495 1789 0.846015 TTAGGCAGCCCAGCATGTAT 59.154 50.0 8.22 0.0 35.83 2.29 R
2074 2368 3.144506 CCATTATCATCACTGTCCAGGC 58.855 50.0 0.00 0.0 0.00 4.85 R
3532 3997 0.591170 AAATGCACCTACACACGCAC 59.409 50.0 0.00 0.0 37.17 5.34 R
4374 4902 0.034896 TGTCCTTCGCACCTTCTTCC 59.965 55.0 0.00 0.0 0.00 3.46 R
5393 5932 0.808755 GGTTATGGTGGCACGAAAGG 59.191 55.0 12.17 0.0 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.483587 AGGACCACGGACATTGCT 58.516 55.556 0.00 0.00 0.00 3.91
18 19 1.761174 AGGACCACGGACATTGCTT 59.239 52.632 0.00 0.00 0.00 3.91
19 20 0.110486 AGGACCACGGACATTGCTTT 59.890 50.000 0.00 0.00 0.00 3.51
20 21 0.958822 GGACCACGGACATTGCTTTT 59.041 50.000 0.00 0.00 0.00 2.27
21 22 1.335872 GGACCACGGACATTGCTTTTG 60.336 52.381 0.00 0.00 0.00 2.44
22 23 1.336755 GACCACGGACATTGCTTTTGT 59.663 47.619 0.00 0.00 0.00 2.83
23 24 2.550606 GACCACGGACATTGCTTTTGTA 59.449 45.455 0.00 0.00 0.00 2.41
24 25 2.552315 ACCACGGACATTGCTTTTGTAG 59.448 45.455 0.00 0.00 0.00 2.74
25 26 2.811431 CCACGGACATTGCTTTTGTAGA 59.189 45.455 0.00 0.00 0.00 2.59
26 27 3.440173 CCACGGACATTGCTTTTGTAGAT 59.560 43.478 0.00 0.00 0.00 1.98
27 28 4.634004 CCACGGACATTGCTTTTGTAGATA 59.366 41.667 0.00 0.00 0.00 1.98
28 29 5.296780 CCACGGACATTGCTTTTGTAGATAT 59.703 40.000 0.00 0.00 0.00 1.63
29 30 6.194463 CACGGACATTGCTTTTGTAGATATG 58.806 40.000 0.00 0.00 0.00 1.78
30 31 5.207768 CGGACATTGCTTTTGTAGATATGC 58.792 41.667 0.00 0.00 0.00 3.14
31 32 5.008019 CGGACATTGCTTTTGTAGATATGCT 59.992 40.000 0.00 0.00 0.00 3.79
32 33 6.202762 CGGACATTGCTTTTGTAGATATGCTA 59.797 38.462 0.00 0.00 0.00 3.49
33 34 7.095060 CGGACATTGCTTTTGTAGATATGCTAT 60.095 37.037 0.00 0.00 0.00 2.97
34 35 8.019669 GGACATTGCTTTTGTAGATATGCTATG 58.980 37.037 9.49 9.49 38.72 2.23
35 36 8.681486 ACATTGCTTTTGTAGATATGCTATGA 57.319 30.769 14.82 0.00 37.21 2.15
36 37 9.123902 ACATTGCTTTTGTAGATATGCTATGAA 57.876 29.630 14.82 0.00 37.21 2.57
37 38 9.608617 CATTGCTTTTGTAGATATGCTATGAAG 57.391 33.333 0.00 0.00 36.38 3.02
38 39 8.962884 TTGCTTTTGTAGATATGCTATGAAGA 57.037 30.769 0.00 0.00 0.00 2.87
39 40 9.565090 TTGCTTTTGTAGATATGCTATGAAGAT 57.435 29.630 0.00 0.00 0.00 2.40
52 53 7.905604 TGCTATGAAGATATGAAAATACGGG 57.094 36.000 0.00 0.00 0.00 5.28
53 54 7.676004 TGCTATGAAGATATGAAAATACGGGA 58.324 34.615 0.00 0.00 0.00 5.14
54 55 8.321353 TGCTATGAAGATATGAAAATACGGGAT 58.679 33.333 0.00 0.00 0.00 3.85
55 56 9.167311 GCTATGAAGATATGAAAATACGGGATT 57.833 33.333 0.00 0.00 0.00 3.01
58 59 9.799106 ATGAAGATATGAAAATACGGGATTTCT 57.201 29.630 0.00 0.00 36.71 2.52
64 65 6.935741 TGAAAATACGGGATTTCTATGTGG 57.064 37.500 0.00 0.00 36.71 4.17
65 66 5.825679 TGAAAATACGGGATTTCTATGTGGG 59.174 40.000 0.00 0.00 36.71 4.61
66 67 5.640158 AAATACGGGATTTCTATGTGGGA 57.360 39.130 0.00 0.00 31.80 4.37
67 68 5.843019 AATACGGGATTTCTATGTGGGAT 57.157 39.130 0.00 0.00 0.00 3.85
68 69 5.843019 ATACGGGATTTCTATGTGGGATT 57.157 39.130 0.00 0.00 0.00 3.01
69 70 3.820557 ACGGGATTTCTATGTGGGATTG 58.179 45.455 0.00 0.00 0.00 2.67
70 71 3.458118 ACGGGATTTCTATGTGGGATTGA 59.542 43.478 0.00 0.00 0.00 2.57
71 72 4.104738 ACGGGATTTCTATGTGGGATTGAT 59.895 41.667 0.00 0.00 0.00 2.57
72 73 5.309543 ACGGGATTTCTATGTGGGATTGATA 59.690 40.000 0.00 0.00 0.00 2.15
73 74 6.183361 ACGGGATTTCTATGTGGGATTGATAA 60.183 38.462 0.00 0.00 0.00 1.75
74 75 6.886459 CGGGATTTCTATGTGGGATTGATAAT 59.114 38.462 0.00 0.00 0.00 1.28
75 76 7.394359 CGGGATTTCTATGTGGGATTGATAATT 59.606 37.037 0.00 0.00 0.00 1.40
76 77 9.753674 GGGATTTCTATGTGGGATTGATAATTA 57.246 33.333 0.00 0.00 0.00 1.40
135 136 3.257627 AGGACCACCCTGTCTTCAA 57.742 52.632 0.00 0.00 45.61 2.69
136 137 1.518367 AGGACCACCCTGTCTTCAAA 58.482 50.000 0.00 0.00 45.61 2.69
137 138 2.065799 AGGACCACCCTGTCTTCAAAT 58.934 47.619 0.00 0.00 45.61 2.32
138 139 2.040412 AGGACCACCCTGTCTTCAAATC 59.960 50.000 0.00 0.00 45.61 2.17
139 140 2.437413 GACCACCCTGTCTTCAAATCC 58.563 52.381 0.00 0.00 32.39 3.01
140 141 2.040412 GACCACCCTGTCTTCAAATCCT 59.960 50.000 0.00 0.00 32.39 3.24
141 142 3.256704 ACCACCCTGTCTTCAAATCCTA 58.743 45.455 0.00 0.00 0.00 2.94
142 143 3.264450 ACCACCCTGTCTTCAAATCCTAG 59.736 47.826 0.00 0.00 0.00 3.02
143 144 3.519510 CCACCCTGTCTTCAAATCCTAGA 59.480 47.826 0.00 0.00 0.00 2.43
144 145 4.508662 CACCCTGTCTTCAAATCCTAGAC 58.491 47.826 0.00 0.00 38.96 2.59
145 146 3.519913 ACCCTGTCTTCAAATCCTAGACC 59.480 47.826 0.00 0.00 37.97 3.85
146 147 3.118223 CCCTGTCTTCAAATCCTAGACCC 60.118 52.174 0.00 0.00 37.97 4.46
147 148 3.430929 CCTGTCTTCAAATCCTAGACCCG 60.431 52.174 0.00 0.00 37.97 5.28
148 149 2.093658 TGTCTTCAAATCCTAGACCCGC 60.094 50.000 0.00 0.00 37.97 6.13
149 150 1.485066 TCTTCAAATCCTAGACCCGCC 59.515 52.381 0.00 0.00 0.00 6.13
150 151 1.209504 CTTCAAATCCTAGACCCGCCA 59.790 52.381 0.00 0.00 0.00 5.69
151 152 0.539986 TCAAATCCTAGACCCGCCAC 59.460 55.000 0.00 0.00 0.00 5.01
152 153 0.541863 CAAATCCTAGACCCGCCACT 59.458 55.000 0.00 0.00 0.00 4.00
199 200 7.398746 TCGTTCAAATGTTCAATATCATCGAC 58.601 34.615 0.00 0.00 0.00 4.20
265 266 6.597262 AGCCTTTTGGTAATTTTTGTTTCG 57.403 33.333 0.00 0.00 42.99 3.46
323 597 4.080356 AGCTTGACCTTTGATATGCCTGTA 60.080 41.667 0.00 0.00 0.00 2.74
352 645 1.280710 CCTGGGGTTAATTTTTGGGGC 59.719 52.381 0.00 0.00 0.00 5.80
397 690 1.686325 GGGCGTCAGCTAATCCTGGA 61.686 60.000 0.00 0.00 44.37 3.86
403 696 2.297597 GTCAGCTAATCCTGGATACGCT 59.702 50.000 20.59 20.59 42.51 5.07
472 766 3.654173 GAACCCCGTGCCCGTAGTC 62.654 68.421 0.00 0.00 0.00 2.59
726 1020 3.584848 AGTTCAGGAGTTGAATAGGTGCT 59.415 43.478 0.00 0.00 46.85 4.40
727 1021 3.616956 TCAGGAGTTGAATAGGTGCTG 57.383 47.619 0.00 0.00 31.34 4.41
728 1022 3.173151 TCAGGAGTTGAATAGGTGCTGA 58.827 45.455 0.00 0.00 35.30 4.26
729 1023 3.776969 TCAGGAGTTGAATAGGTGCTGAT 59.223 43.478 0.00 0.00 33.04 2.90
730 1024 4.225942 TCAGGAGTTGAATAGGTGCTGATT 59.774 41.667 0.00 0.00 33.04 2.57
731 1025 4.334759 CAGGAGTTGAATAGGTGCTGATTG 59.665 45.833 0.00 0.00 30.43 2.67
732 1026 4.225942 AGGAGTTGAATAGGTGCTGATTGA 59.774 41.667 0.00 0.00 0.00 2.57
733 1027 4.943705 GGAGTTGAATAGGTGCTGATTGAA 59.056 41.667 0.00 0.00 0.00 2.69
734 1028 5.591877 GGAGTTGAATAGGTGCTGATTGAAT 59.408 40.000 0.00 0.00 0.00 2.57
735 1029 6.767902 GGAGTTGAATAGGTGCTGATTGAATA 59.232 38.462 0.00 0.00 0.00 1.75
736 1030 7.041508 GGAGTTGAATAGGTGCTGATTGAATAG 60.042 40.741 0.00 0.00 0.00 1.73
737 1031 6.769822 AGTTGAATAGGTGCTGATTGAATAGG 59.230 38.462 0.00 0.00 0.00 2.57
738 1032 6.252599 TGAATAGGTGCTGATTGAATAGGT 57.747 37.500 0.00 0.00 0.00 3.08
739 1033 6.057533 TGAATAGGTGCTGATTGAATAGGTG 58.942 40.000 0.00 0.00 0.00 4.00
740 1034 2.648059 AGGTGCTGATTGAATAGGTGC 58.352 47.619 0.00 0.00 0.00 5.01
746 1040 5.528690 GTGCTGATTGAATAGGTGCTGATAA 59.471 40.000 0.00 0.00 0.00 1.75
753 1047 8.757982 ATTGAATAGGTGCTGATAATCTTGTT 57.242 30.769 0.00 0.00 0.00 2.83
776 1070 3.882888 GGTGTGTTGTTTCCATTCTCTGA 59.117 43.478 0.00 0.00 0.00 3.27
816 1110 5.132897 TGGTTTTGTTATTGCTGATGGAC 57.867 39.130 0.00 0.00 0.00 4.02
819 1113 6.435591 TGGTTTTGTTATTGCTGATGGACATA 59.564 34.615 0.00 0.00 0.00 2.29
993 1287 4.676546 TGAGAATCTAGATGTGCTTGTCG 58.323 43.478 5.86 0.00 34.92 4.35
1134 1428 2.628178 CCTATCCTATGCAACCGTCTCA 59.372 50.000 0.00 0.00 0.00 3.27
1364 1658 6.367969 GTGAAACTCGGCTTAAGTTCTGATAA 59.632 38.462 4.02 0.00 35.96 1.75
1495 1789 6.832900 TTGGAATACAATCATTGCTGGATACA 59.167 34.615 0.00 0.00 38.24 2.29
1642 1936 1.065926 TCGGAAAGCTCTGTCATGCAT 60.066 47.619 0.00 0.00 0.00 3.96
1848 2142 5.814188 TGTTAAGCTATTCAGAGACATGCAG 59.186 40.000 0.00 0.00 0.00 4.41
2074 2368 1.818060 TGGTCAAGCGGGATGATTTTG 59.182 47.619 0.00 0.00 0.00 2.44
2282 2576 4.641094 CAGTATTTACGGTATTGCCCCAAA 59.359 41.667 0.00 0.00 0.00 3.28
2286 2580 2.525105 ACGGTATTGCCCCAAAGATT 57.475 45.000 0.00 0.00 0.00 2.40
2295 2589 3.153919 TGCCCCAAAGATTGAACACTAC 58.846 45.455 0.00 0.00 0.00 2.73
2892 3294 4.014569 TGAGCCACTTAATGTGCAACTA 57.985 40.909 0.00 0.00 44.92 2.24
3057 3517 5.144692 TCTTCTCTCATGTTCTTGTCTGG 57.855 43.478 0.00 0.00 0.00 3.86
3075 3536 6.727394 TGTCTGGCAGTTATATTTTTACCCT 58.273 36.000 15.27 0.00 0.00 4.34
3208 3669 3.555966 CCTGAAAGTTCCAAACTCCAGT 58.444 45.455 15.09 0.00 41.91 4.00
3315 3780 5.185056 GCCCCAGAAGCTGACTTTTATTTTA 59.815 40.000 0.00 0.00 35.82 1.52
3458 3923 1.413077 CCCACTCGTAAGGATTCCTCC 59.587 57.143 5.48 0.00 42.43 4.30
3532 3997 5.132502 TGGTTGGATATGGATTAAGCACAG 58.867 41.667 0.00 0.00 0.00 3.66
3573 4038 5.604758 TGAGAGGAGAAGGTACATGAATG 57.395 43.478 0.00 0.00 0.00 2.67
3599 4064 2.620112 CCAGAAAGCTGTGCACCCG 61.620 63.158 15.69 6.63 40.63 5.28
3614 4079 1.153289 CCCGCAGCTTGCTGACTAT 60.153 57.895 24.67 0.00 42.25 2.12
3701 4166 2.309755 TCCTCCTCCTGCAATGAAATGT 59.690 45.455 0.00 0.00 0.00 2.71
3749 4214 6.078456 ACAGAACTCATTAAATGGATGGGA 57.922 37.500 0.00 0.00 0.00 4.37
3752 4217 7.941238 ACAGAACTCATTAAATGGATGGGATAG 59.059 37.037 0.00 0.00 0.00 2.08
3764 4229 4.042062 TGGATGGGATAGCTTGATAGGTTG 59.958 45.833 0.00 0.00 33.36 3.77
3771 4251 8.762645 TGGGATAGCTTGATAGGTTGATTATAG 58.237 37.037 0.00 0.00 33.36 1.31
3799 4279 7.399245 TTGAGCTTTAAAGTTTTGGTACACT 57.601 32.000 16.38 1.19 39.29 3.55
3808 4288 5.112129 AGTTTTGGTACACTTCTGTTCCT 57.888 39.130 0.00 0.00 39.29 3.36
3836 4319 2.009051 TGACCATATGCTTGTTGCGAG 58.991 47.619 0.00 0.00 46.63 5.03
3846 4332 0.394938 TTGTTGCGAGGGCTCTTGTA 59.605 50.000 1.91 0.00 40.82 2.41
3849 4335 0.179111 TTGCGAGGGCTCTTGTATCG 60.179 55.000 1.91 0.00 40.82 2.92
3856 4342 2.488545 AGGGCTCTTGTATCGTATAGCG 59.511 50.000 0.00 0.00 43.01 4.26
3858 4344 3.235195 GGCTCTTGTATCGTATAGCGTG 58.765 50.000 0.00 0.00 42.13 5.34
3859 4345 2.657372 GCTCTTGTATCGTATAGCGTGC 59.343 50.000 0.00 0.00 42.13 5.34
3860 4346 3.852205 GCTCTTGTATCGTATAGCGTGCA 60.852 47.826 0.00 0.00 42.13 4.57
3861 4347 4.287720 CTCTTGTATCGTATAGCGTGCAA 58.712 43.478 0.00 0.00 42.13 4.08
3863 4349 3.974871 TGTATCGTATAGCGTGCAAGA 57.025 42.857 2.99 0.00 42.13 3.02
3865 4351 4.287720 TGTATCGTATAGCGTGCAAGAAG 58.712 43.478 2.99 0.00 42.13 2.85
3866 4352 2.203800 TCGTATAGCGTGCAAGAAGG 57.796 50.000 2.99 0.00 42.13 3.46
3867 4353 1.746787 TCGTATAGCGTGCAAGAAGGA 59.253 47.619 2.99 0.00 42.13 3.36
3868 4354 2.164827 TCGTATAGCGTGCAAGAAGGAA 59.835 45.455 2.99 0.00 42.13 3.36
3870 4356 3.241995 CGTATAGCGTGCAAGAAGGAAAC 60.242 47.826 2.99 0.00 35.54 2.78
3871 4357 2.248280 TAGCGTGCAAGAAGGAAACA 57.752 45.000 2.99 0.00 0.00 2.83
3872 4358 1.388547 AGCGTGCAAGAAGGAAACAA 58.611 45.000 2.99 0.00 0.00 2.83
3873 4359 1.748493 AGCGTGCAAGAAGGAAACAAA 59.252 42.857 2.99 0.00 0.00 2.83
3879 4406 6.751888 GCGTGCAAGAAGGAAACAAATATATT 59.248 34.615 2.99 0.00 0.00 1.28
3912 4439 7.020010 CACTTGATTCTATCTTCAGCAACAAC 58.980 38.462 0.00 0.00 0.00 3.32
3914 4441 4.631377 TGATTCTATCTTCAGCAACAACGG 59.369 41.667 0.00 0.00 0.00 4.44
3922 4450 0.798776 CAGCAACAACGGTGAGATCC 59.201 55.000 7.88 0.00 36.48 3.36
3985 4513 1.679139 TCAGGCTGGTTGTGTCTTTG 58.321 50.000 15.73 0.00 0.00 2.77
3991 4519 3.243068 GGCTGGTTGTGTCTTTGTAACTG 60.243 47.826 0.00 0.00 0.00 3.16
4033 4561 0.104409 AGGGACTGGTTGAGAGGGTT 60.104 55.000 0.00 0.00 37.18 4.11
4036 4564 1.543429 GGACTGGTTGAGAGGGTTGTG 60.543 57.143 0.00 0.00 0.00 3.33
4039 4567 0.472471 TGGTTGAGAGGGTTGTGGTC 59.528 55.000 0.00 0.00 0.00 4.02
4048 4576 1.995542 AGGGTTGTGGTCATCTTCCAT 59.004 47.619 0.00 0.00 37.30 3.41
4060 4588 6.116680 GTCATCTTCCATGACAAAGATCAC 57.883 41.667 9.40 8.50 45.61 3.06
4061 4589 5.645067 GTCATCTTCCATGACAAAGATCACA 59.355 40.000 9.40 0.00 45.61 3.58
4069 4597 5.065602 CCATGACAAAGATCACATACCACTG 59.934 44.000 0.00 0.00 0.00 3.66
4102 4630 1.311859 TCAAGCTTGCAGTCAACCAG 58.688 50.000 21.99 0.00 0.00 4.00
4123 4651 2.957006 GTCCTATGGCTCCGAGTTAGAA 59.043 50.000 0.00 0.00 0.00 2.10
4126 4654 3.637229 CCTATGGCTCCGAGTTAGAAGAA 59.363 47.826 0.00 0.00 0.00 2.52
4285 4813 2.125512 CAGCCAGCGGTGACTACC 60.126 66.667 17.83 0.00 43.89 3.18
4304 4832 2.248248 CCATCACCGGGAGAGCTTATA 58.752 52.381 6.32 0.00 0.00 0.98
4371 4899 0.832559 CCTACTTCCGATCCCTCCCC 60.833 65.000 0.00 0.00 0.00 4.81
4380 4908 3.995809 ATCCCTCCCCGCGGAAGAA 62.996 63.158 30.73 14.76 37.86 2.52
4536 5064 0.326264 AACCTGGACCATCAGCAGAC 59.674 55.000 0.00 0.00 33.64 3.51
4782 5318 5.390567 CCTTACGATGACAAACTGGCTAAAC 60.391 44.000 0.00 0.00 0.00 2.01
4924 5460 9.143155 TCTAGGACATACATTCAGCTTAACATA 57.857 33.333 0.00 0.00 0.00 2.29
5224 5763 1.182667 GCTTCCTTAAACGCCCCATT 58.817 50.000 0.00 0.00 0.00 3.16
5253 5792 2.955660 ACTTTCAGGAATTCGTTTGCCA 59.044 40.909 0.00 0.00 0.00 4.92
5393 5932 4.816925 GTGTCTCCTACATTGGCCTTATTC 59.183 45.833 3.32 0.00 41.10 1.75
5502 6043 3.815401 AGGATCGTTGCATAACATTAGCC 59.185 43.478 0.00 0.00 36.58 3.93
5504 6045 4.994852 GGATCGTTGCATAACATTAGCCTA 59.005 41.667 0.00 0.00 36.58 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.110486 AAAGCAATGTCCGTGGTCCT 59.890 50.000 0.00 0.00 0.00 3.85
1 2 0.958822 AAAAGCAATGTCCGTGGTCC 59.041 50.000 0.00 0.00 0.00 4.46
2 3 1.336755 ACAAAAGCAATGTCCGTGGTC 59.663 47.619 0.00 0.00 0.00 4.02
3 4 1.398692 ACAAAAGCAATGTCCGTGGT 58.601 45.000 0.00 0.00 0.00 4.16
4 5 2.811431 TCTACAAAAGCAATGTCCGTGG 59.189 45.455 0.00 0.00 32.27 4.94
5 6 4.685169 ATCTACAAAAGCAATGTCCGTG 57.315 40.909 0.00 0.00 32.27 4.94
6 7 5.220854 GCATATCTACAAAAGCAATGTCCGT 60.221 40.000 0.00 0.00 32.27 4.69
7 8 5.008019 AGCATATCTACAAAAGCAATGTCCG 59.992 40.000 0.00 0.00 32.27 4.79
8 9 6.382869 AGCATATCTACAAAAGCAATGTCC 57.617 37.500 0.00 0.00 32.27 4.02
9 10 8.777413 TCATAGCATATCTACAAAAGCAATGTC 58.223 33.333 0.00 0.00 32.27 3.06
10 11 8.681486 TCATAGCATATCTACAAAAGCAATGT 57.319 30.769 0.00 0.00 34.81 2.71
11 12 9.608617 CTTCATAGCATATCTACAAAAGCAATG 57.391 33.333 0.00 0.00 0.00 2.82
12 13 9.565090 TCTTCATAGCATATCTACAAAAGCAAT 57.435 29.630 0.00 0.00 0.00 3.56
13 14 8.962884 TCTTCATAGCATATCTACAAAAGCAA 57.037 30.769 0.00 0.00 0.00 3.91
26 27 9.599866 CCCGTATTTTCATATCTTCATAGCATA 57.400 33.333 0.00 0.00 0.00 3.14
27 28 8.321353 TCCCGTATTTTCATATCTTCATAGCAT 58.679 33.333 0.00 0.00 0.00 3.79
28 29 7.676004 TCCCGTATTTTCATATCTTCATAGCA 58.324 34.615 0.00 0.00 0.00 3.49
29 30 8.723942 ATCCCGTATTTTCATATCTTCATAGC 57.276 34.615 0.00 0.00 0.00 2.97
32 33 9.799106 AGAAATCCCGTATTTTCATATCTTCAT 57.201 29.630 0.00 0.00 37.93 2.57
38 39 9.231297 CCACATAGAAATCCCGTATTTTCATAT 57.769 33.333 0.00 0.00 37.93 1.78
39 40 7.663905 CCCACATAGAAATCCCGTATTTTCATA 59.336 37.037 0.00 0.00 37.93 2.15
40 41 6.490040 CCCACATAGAAATCCCGTATTTTCAT 59.510 38.462 0.00 0.00 37.93 2.57
41 42 5.825679 CCCACATAGAAATCCCGTATTTTCA 59.174 40.000 0.00 0.00 37.93 2.69
42 43 6.059484 TCCCACATAGAAATCCCGTATTTTC 58.941 40.000 0.00 0.00 37.93 2.29
43 44 6.008696 TCCCACATAGAAATCCCGTATTTT 57.991 37.500 0.00 0.00 37.93 1.82
44 45 5.640158 TCCCACATAGAAATCCCGTATTT 57.360 39.130 0.00 0.00 40.59 1.40
45 46 5.843019 ATCCCACATAGAAATCCCGTATT 57.157 39.130 0.00 0.00 0.00 1.89
46 47 5.309543 TCAATCCCACATAGAAATCCCGTAT 59.690 40.000 0.00 0.00 0.00 3.06
47 48 4.656575 TCAATCCCACATAGAAATCCCGTA 59.343 41.667 0.00 0.00 0.00 4.02
48 49 3.458118 TCAATCCCACATAGAAATCCCGT 59.542 43.478 0.00 0.00 0.00 5.28
49 50 4.085357 TCAATCCCACATAGAAATCCCG 57.915 45.455 0.00 0.00 0.00 5.14
50 51 8.655935 AATTATCAATCCCACATAGAAATCCC 57.344 34.615 0.00 0.00 0.00 3.85
108 109 1.425448 CAGGGTGGTCCTCCTCTTTTT 59.575 52.381 9.84 0.00 46.12 1.94
109 110 1.068121 CAGGGTGGTCCTCCTCTTTT 58.932 55.000 9.84 0.00 46.12 2.27
110 111 0.104409 ACAGGGTGGTCCTCCTCTTT 60.104 55.000 9.84 0.00 46.12 2.52
111 112 0.545548 GACAGGGTGGTCCTCCTCTT 60.546 60.000 9.84 0.00 46.12 2.85
112 113 1.079438 GACAGGGTGGTCCTCCTCT 59.921 63.158 9.84 2.99 46.12 3.69
113 114 0.545548 AAGACAGGGTGGTCCTCCTC 60.546 60.000 9.84 0.25 46.12 3.71
114 115 0.545548 GAAGACAGGGTGGTCCTCCT 60.546 60.000 9.84 4.38 46.12 3.69
115 116 0.836400 TGAAGACAGGGTGGTCCTCC 60.836 60.000 0.87 0.87 46.12 4.30
116 117 1.056660 TTGAAGACAGGGTGGTCCTC 58.943 55.000 0.00 0.00 46.12 3.71
118 119 2.437413 GATTTGAAGACAGGGTGGTCC 58.563 52.381 0.00 0.00 38.59 4.46
119 120 2.040412 AGGATTTGAAGACAGGGTGGTC 59.960 50.000 0.00 0.00 38.08 4.02
120 121 2.065799 AGGATTTGAAGACAGGGTGGT 58.934 47.619 0.00 0.00 0.00 4.16
121 122 2.887151 AGGATTTGAAGACAGGGTGG 57.113 50.000 0.00 0.00 0.00 4.61
122 123 4.508662 GTCTAGGATTTGAAGACAGGGTG 58.491 47.826 0.00 0.00 39.54 4.61
123 124 3.519913 GGTCTAGGATTTGAAGACAGGGT 59.480 47.826 4.31 0.00 41.15 4.34
124 125 3.118223 GGGTCTAGGATTTGAAGACAGGG 60.118 52.174 4.31 0.00 41.15 4.45
125 126 3.430929 CGGGTCTAGGATTTGAAGACAGG 60.431 52.174 4.31 0.00 41.15 4.00
126 127 3.786635 CGGGTCTAGGATTTGAAGACAG 58.213 50.000 4.31 0.00 41.15 3.51
127 128 2.093658 GCGGGTCTAGGATTTGAAGACA 60.094 50.000 4.31 0.00 41.15 3.41
128 129 2.552031 GCGGGTCTAGGATTTGAAGAC 58.448 52.381 0.00 0.00 39.12 3.01
129 130 1.485066 GGCGGGTCTAGGATTTGAAGA 59.515 52.381 0.00 0.00 0.00 2.87
130 131 1.209504 TGGCGGGTCTAGGATTTGAAG 59.790 52.381 0.00 0.00 0.00 3.02
131 132 1.065709 GTGGCGGGTCTAGGATTTGAA 60.066 52.381 0.00 0.00 0.00 2.69
132 133 0.539986 GTGGCGGGTCTAGGATTTGA 59.460 55.000 0.00 0.00 0.00 2.69
133 134 0.541863 AGTGGCGGGTCTAGGATTTG 59.458 55.000 0.00 0.00 0.00 2.32
134 135 0.541863 CAGTGGCGGGTCTAGGATTT 59.458 55.000 0.00 0.00 0.00 2.17
135 136 0.325296 TCAGTGGCGGGTCTAGGATT 60.325 55.000 0.00 0.00 0.00 3.01
136 137 0.105453 ATCAGTGGCGGGTCTAGGAT 60.105 55.000 0.00 0.00 0.00 3.24
137 138 0.325296 AATCAGTGGCGGGTCTAGGA 60.325 55.000 0.00 0.00 0.00 2.94
138 139 1.341531 CTAATCAGTGGCGGGTCTAGG 59.658 57.143 0.00 0.00 0.00 3.02
139 140 1.269831 GCTAATCAGTGGCGGGTCTAG 60.270 57.143 0.00 0.00 0.00 2.43
140 141 0.750850 GCTAATCAGTGGCGGGTCTA 59.249 55.000 0.00 0.00 0.00 2.59
141 142 0.978146 AGCTAATCAGTGGCGGGTCT 60.978 55.000 0.00 0.00 0.00 3.85
142 143 0.530870 GAGCTAATCAGTGGCGGGTC 60.531 60.000 0.00 0.00 0.00 4.46
143 144 1.522569 GAGCTAATCAGTGGCGGGT 59.477 57.895 0.00 0.00 0.00 5.28
144 145 1.227674 GGAGCTAATCAGTGGCGGG 60.228 63.158 0.00 0.00 0.00 6.13
145 146 0.179000 AAGGAGCTAATCAGTGGCGG 59.821 55.000 0.00 0.00 0.00 6.13
146 147 1.936547 GAAAGGAGCTAATCAGTGGCG 59.063 52.381 0.00 0.00 0.00 5.69
147 148 2.991250 TGAAAGGAGCTAATCAGTGGC 58.009 47.619 0.00 0.00 0.00 5.01
148 149 6.586344 TCTATTGAAAGGAGCTAATCAGTGG 58.414 40.000 0.00 0.00 0.00 4.00
149 150 8.674263 AATCTATTGAAAGGAGCTAATCAGTG 57.326 34.615 0.00 0.00 0.00 3.66
150 151 7.655328 CGAATCTATTGAAAGGAGCTAATCAGT 59.345 37.037 0.00 0.00 0.00 3.41
151 152 7.655328 ACGAATCTATTGAAAGGAGCTAATCAG 59.345 37.037 0.00 0.00 0.00 2.90
152 153 7.500992 ACGAATCTATTGAAAGGAGCTAATCA 58.499 34.615 0.00 0.00 0.00 2.57
199 200 7.923414 AACTTTAAACTACAGGAGCTAATGG 57.077 36.000 2.95 0.00 0.00 3.16
296 297 5.065914 GGCATATCAAAGGTCAAGCTCATA 58.934 41.667 0.00 0.00 0.00 2.15
298 299 3.054139 AGGCATATCAAAGGTCAAGCTCA 60.054 43.478 0.00 0.00 0.00 4.26
323 597 8.598916 CCAAAAATTAACCCCAGGTTTACTTAT 58.401 33.333 4.01 0.00 44.33 1.73
562 856 4.894114 TCTACTGCTTTCCCAGGTAGTATC 59.106 45.833 0.00 0.00 37.16 2.24
674 968 7.087639 CCAACTGGAACGAAAATAAATGCTAA 58.912 34.615 0.00 0.00 37.39 3.09
726 1020 7.994911 ACAAGATTATCAGCACCTATTCAATCA 59.005 33.333 0.00 0.00 0.00 2.57
727 1021 8.388484 ACAAGATTATCAGCACCTATTCAATC 57.612 34.615 0.00 0.00 0.00 2.67
728 1022 8.627403 CAACAAGATTATCAGCACCTATTCAAT 58.373 33.333 0.00 0.00 0.00 2.57
729 1023 7.067372 CCAACAAGATTATCAGCACCTATTCAA 59.933 37.037 0.00 0.00 0.00 2.69
730 1024 6.543465 CCAACAAGATTATCAGCACCTATTCA 59.457 38.462 0.00 0.00 0.00 2.57
731 1025 6.543831 ACCAACAAGATTATCAGCACCTATTC 59.456 38.462 0.00 0.00 0.00 1.75
732 1026 6.319658 CACCAACAAGATTATCAGCACCTATT 59.680 38.462 0.00 0.00 0.00 1.73
733 1027 5.824624 CACCAACAAGATTATCAGCACCTAT 59.175 40.000 0.00 0.00 0.00 2.57
734 1028 5.185454 CACCAACAAGATTATCAGCACCTA 58.815 41.667 0.00 0.00 0.00 3.08
735 1029 4.012374 CACCAACAAGATTATCAGCACCT 58.988 43.478 0.00 0.00 0.00 4.00
736 1030 3.758554 ACACCAACAAGATTATCAGCACC 59.241 43.478 0.00 0.00 0.00 5.01
737 1031 4.216257 ACACACCAACAAGATTATCAGCAC 59.784 41.667 0.00 0.00 0.00 4.40
738 1032 4.397420 ACACACCAACAAGATTATCAGCA 58.603 39.130 0.00 0.00 0.00 4.41
739 1033 5.156355 CAACACACCAACAAGATTATCAGC 58.844 41.667 0.00 0.00 0.00 4.26
740 1034 6.317789 ACAACACACCAACAAGATTATCAG 57.682 37.500 0.00 0.00 0.00 2.90
746 1040 3.766591 TGGAAACAACACACCAACAAGAT 59.233 39.130 0.00 0.00 37.44 2.40
776 1070 9.777297 ACAAAACCAAGATTATATTTTTGCACT 57.223 25.926 0.00 0.00 37.42 4.40
816 1110 2.874701 CGAACAGGGGCAATTCTCTATG 59.125 50.000 0.00 0.00 0.00 2.23
819 1113 0.984230 TCGAACAGGGGCAATTCTCT 59.016 50.000 0.00 0.00 0.00 3.10
1062 1356 0.119155 AGATTGGGACAGGGAGGACA 59.881 55.000 0.00 0.00 42.39 4.02
1134 1428 3.141767 GGTACCTTGAGCAAAAGACCT 57.858 47.619 4.06 0.00 0.00 3.85
1495 1789 0.846015 TTAGGCAGCCCAGCATGTAT 59.154 50.000 8.22 0.00 35.83 2.29
1642 1936 7.397892 TCTCAAAACCATTTGTCACAAGTAA 57.602 32.000 0.00 0.00 45.02 2.24
1848 2142 4.456911 TCATCAACTTTCACTCCAGCAATC 59.543 41.667 0.00 0.00 0.00 2.67
2074 2368 3.144506 CCATTATCATCACTGTCCAGGC 58.855 50.000 0.00 0.00 0.00 4.85
2282 2576 3.610040 TGCATCCGTAGTGTTCAATCT 57.390 42.857 0.00 0.00 0.00 2.40
2286 2580 1.277842 ACCATGCATCCGTAGTGTTCA 59.722 47.619 0.00 0.00 0.00 3.18
2295 2589 1.202734 AGGAGATCAACCATGCATCCG 60.203 52.381 0.00 0.00 31.36 4.18
2892 3294 3.769739 TCAGGATAACAGTGTGCACTT 57.230 42.857 19.41 6.34 40.20 3.16
2927 3329 5.415701 GCAATACCAGAAGGAAACATCTCAA 59.584 40.000 0.00 0.00 35.94 3.02
3075 3536 5.944135 AACCAAAGCTGGGTTAGTAAGTTA 58.056 37.500 18.72 0.00 41.17 2.24
3208 3669 9.181061 GGCCCAGTTCAAGTAAATAACTAAATA 57.819 33.333 0.00 0.00 37.50 1.40
3315 3780 6.432162 AGTGAGATGACAATGTGCAACTATTT 59.568 34.615 0.00 0.00 38.04 1.40
3412 3877 4.279420 AGAAACCTTTGAGGAAGACAATGC 59.721 41.667 0.07 0.00 37.67 3.56
3458 3923 7.096551 CCAATGTGACTTAAATACAAAAGGGG 58.903 38.462 0.00 0.00 0.00 4.79
3503 3968 7.398618 TGCTTAATCCATATCCAACCAAAGAAA 59.601 33.333 0.00 0.00 0.00 2.52
3532 3997 0.591170 AAATGCACCTACACACGCAC 59.409 50.000 0.00 0.00 37.17 5.34
3536 4001 2.744202 CCTCTCAAATGCACCTACACAC 59.256 50.000 0.00 0.00 0.00 3.82
3573 4038 2.224314 GCACAGCTTTCTGGACAACTAC 59.776 50.000 0.00 0.00 44.54 2.73
3599 4064 2.805099 GTGGATATAGTCAGCAAGCTGC 59.195 50.000 16.89 11.87 45.46 5.25
3614 4079 3.024547 GCCAGTAGTCACAGAGTGGATA 58.975 50.000 7.61 0.00 38.27 2.59
3727 4192 7.094463 GCTATCCCATCCATTTAATGAGTTCTG 60.094 40.741 6.50 0.00 0.00 3.02
3745 4210 5.912149 AATCAACCTATCAAGCTATCCCA 57.088 39.130 0.00 0.00 0.00 4.37
3746 4211 8.763601 ACTATAATCAACCTATCAAGCTATCCC 58.236 37.037 0.00 0.00 0.00 3.85
3749 4214 8.820831 AGCACTATAATCAACCTATCAAGCTAT 58.179 33.333 0.00 0.00 0.00 2.97
3752 4217 7.442364 TCAAGCACTATAATCAACCTATCAAGC 59.558 37.037 0.00 0.00 0.00 4.01
3771 4251 5.109210 ACCAAAACTTTAAAGCTCAAGCAC 58.891 37.500 15.24 0.00 45.16 4.40
3826 4309 0.886490 ACAAGAGCCCTCGCAACAAG 60.886 55.000 0.00 0.00 37.52 3.16
3833 4316 3.426426 GCTATACGATACAAGAGCCCTCG 60.426 52.174 0.00 0.00 35.56 4.63
3849 4335 3.682858 TGTTTCCTTCTTGCACGCTATAC 59.317 43.478 0.00 0.00 0.00 1.47
3893 4420 4.393062 CACCGTTGTTGCTGAAGATAGAAT 59.607 41.667 0.00 0.00 0.00 2.40
3897 4424 3.006430 TCTCACCGTTGTTGCTGAAGATA 59.994 43.478 0.00 0.00 0.00 1.98
3899 4426 1.138069 TCTCACCGTTGTTGCTGAAGA 59.862 47.619 0.00 0.00 0.00 2.87
3922 4450 0.613260 TCAACACCAAGGGATCCTCG 59.387 55.000 12.58 0.00 30.89 4.63
3923 4451 2.820197 GTTTCAACACCAAGGGATCCTC 59.180 50.000 12.58 1.55 30.89 3.71
3985 4513 9.874215 GTTGTAAGAAAACTTATGGTCAGTTAC 57.126 33.333 0.00 0.00 33.12 2.50
3991 4519 6.072119 CCTGGGTTGTAAGAAAACTTATGGTC 60.072 42.308 0.00 0.00 0.00 4.02
4033 4561 3.786368 TTGTCATGGAAGATGACCACA 57.214 42.857 11.33 0.00 45.70 4.17
4036 4564 5.065731 GTGATCTTTGTCATGGAAGATGACC 59.934 44.000 18.32 9.39 45.70 4.02
4039 4567 6.694877 ATGTGATCTTTGTCATGGAAGATG 57.305 37.500 18.32 0.00 41.39 2.90
4048 4576 4.285775 TCCAGTGGTATGTGATCTTTGTCA 59.714 41.667 9.54 0.00 0.00 3.58
4060 4588 4.389374 ACACAAACTTCTCCAGTGGTATG 58.611 43.478 9.54 4.07 35.12 2.39
4061 4589 4.706842 ACACAAACTTCTCCAGTGGTAT 57.293 40.909 9.54 0.00 35.12 2.73
4069 4597 4.354587 CAAGCTTGAACACAAACTTCTCC 58.645 43.478 22.31 0.00 30.68 3.71
4102 4630 2.584236 TCTAACTCGGAGCCATAGGAC 58.416 52.381 4.58 0.00 0.00 3.85
4215 4743 3.550437 ATCGTCCAAGAAAGAGATGGG 57.450 47.619 0.00 0.00 34.89 4.00
4285 4813 3.306364 CCTTATAAGCTCTCCCGGTGATG 60.306 52.174 6.99 0.00 0.00 3.07
4374 4902 0.034896 TGTCCTTCGCACCTTCTTCC 59.965 55.000 0.00 0.00 0.00 3.46
4375 4903 1.801178 CTTGTCCTTCGCACCTTCTTC 59.199 52.381 0.00 0.00 0.00 2.87
4376 4904 1.543429 CCTTGTCCTTCGCACCTTCTT 60.543 52.381 0.00 0.00 0.00 2.52
4380 4908 1.674057 CTCCTTGTCCTTCGCACCT 59.326 57.895 0.00 0.00 0.00 4.00
4782 5318 1.572085 CTGAACTCTGTTGCTGGCGG 61.572 60.000 0.00 0.00 0.00 6.13
5224 5763 5.617252 ACGAATTCCTGAAAGTAAACTCCA 58.383 37.500 0.00 0.00 0.00 3.86
5253 5792 1.000896 CGGCAAAATGGTCTCCCCT 60.001 57.895 0.00 0.00 0.00 4.79
5393 5932 0.808755 GGTTATGGTGGCACGAAAGG 59.191 55.000 12.17 0.00 0.00 3.11
5502 6043 9.559958 GGCACAAATGGATAATATTCGAAATAG 57.440 33.333 0.00 0.00 0.00 1.73
5504 6045 7.950512 TGGCACAAATGGATAATATTCGAAAT 58.049 30.769 0.00 0.00 31.92 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.