Multiple sequence alignment - TraesCS7B01G162900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G162900 chr7B 100.000 2505 0 0 1 2505 223710189 223712693 0.000000e+00 4626
1 TraesCS7B01G162900 chr6B 97.474 1544 36 3 1 1542 415896411 415894869 0.000000e+00 2632
2 TraesCS7B01G162900 chr5B 93.043 1538 93 8 1 1536 315935897 315934372 0.000000e+00 2235
3 TraesCS7B01G162900 chr7D 94.386 855 42 4 1538 2391 247312888 247313737 0.000000e+00 1308
4 TraesCS7B01G162900 chr7D 79.919 1489 285 13 55 1537 40263701 40265181 0.000000e+00 1081
5 TraesCS7B01G162900 chr7A 93.852 862 42 3 1538 2391 264845766 264846624 0.000000e+00 1288
6 TraesCS7B01G162900 chr4A 94.474 742 36 3 683 1420 545096798 545096058 0.000000e+00 1138
7 TraesCS7B01G162900 chr4A 96.000 100 4 0 1437 1536 544955292 544955193 1.990000e-36 163
8 TraesCS7B01G162900 chr4A 98.305 59 1 0 1412 1470 544955350 544955292 1.230000e-18 104
9 TraesCS7B01G162900 chr2D 91.993 587 36 7 951 1536 538282804 538282228 0.000000e+00 813
10 TraesCS7B01G162900 chr1D 89.197 361 37 1 1176 1536 341843155 341842797 1.370000e-122 449


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G162900 chr7B 223710189 223712693 2504 False 4626 4626 100.000 1 2505 1 chr7B.!!$F1 2504
1 TraesCS7B01G162900 chr6B 415894869 415896411 1542 True 2632 2632 97.474 1 1542 1 chr6B.!!$R1 1541
2 TraesCS7B01G162900 chr5B 315934372 315935897 1525 True 2235 2235 93.043 1 1536 1 chr5B.!!$R1 1535
3 TraesCS7B01G162900 chr7D 247312888 247313737 849 False 1308 1308 94.386 1538 2391 1 chr7D.!!$F2 853
4 TraesCS7B01G162900 chr7D 40263701 40265181 1480 False 1081 1081 79.919 55 1537 1 chr7D.!!$F1 1482
5 TraesCS7B01G162900 chr7A 264845766 264846624 858 False 1288 1288 93.852 1538 2391 1 chr7A.!!$F1 853
6 TraesCS7B01G162900 chr4A 545096058 545096798 740 True 1138 1138 94.474 683 1420 1 chr4A.!!$R1 737
7 TraesCS7B01G162900 chr2D 538282228 538282804 576 True 813 813 91.993 951 1536 1 chr2D.!!$R1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
871 879 0.808755 GGTTATGGTGGCACGAAAGG 59.191 55.0 12.17 0.0 0.0 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2425 2446 0.029834 CATATGCTTGTTGCGAGGGC 59.97 55.0 0.0 0.0 46.63 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.338249 ACTTCAGAACCCGTCATCATTG 58.662 45.455 0.00 0.00 0.00 2.82
120 122 1.680735 GGGAATTTCGTATGCATGGCA 59.319 47.619 10.16 0.00 44.86 4.92
165 168 7.171337 GCAACTTCTGAAAAAGGCATAATTTGA 59.829 33.333 0.00 0.00 0.00 2.69
480 485 5.753438 TGGATAGCATAGAACGTGATTCAAC 59.247 40.000 0.00 0.00 40.09 3.18
633 639 9.638176 ACCATTAAGAATGAAGCTGAAGAATAT 57.362 29.630 0.70 0.00 41.46 1.28
693 699 3.513119 AGATATGATGAGGATGGTGGTCG 59.487 47.826 0.00 0.00 0.00 4.79
760 766 7.950512 TGGCACAAATGGATAATATTCGAAAT 58.049 30.769 0.00 0.00 31.92 2.17
762 768 9.559958 GGCACAAATGGATAATATTCGAAATAG 57.440 33.333 0.00 0.00 0.00 1.73
871 879 0.808755 GGTTATGGTGGCACGAAAGG 59.191 55.000 12.17 0.00 0.00 3.11
1011 1019 1.000896 CGGCAAAATGGTCTCCCCT 60.001 57.895 0.00 0.00 0.00 4.79
1040 1048 5.617252 ACGAATTCCTGAAAGTAAACTCCA 58.383 37.500 0.00 0.00 0.00 3.86
1482 1494 1.572085 CTGAACTCTGTTGCTGGCGG 61.572 60.000 0.00 0.00 0.00 6.13
1884 1904 1.674057 CTCCTTGTCCTTCGCACCT 59.326 57.895 0.00 0.00 0.00 4.00
1888 1908 1.543429 CCTTGTCCTTCGCACCTTCTT 60.543 52.381 0.00 0.00 0.00 2.52
1889 1909 1.801178 CTTGTCCTTCGCACCTTCTTC 59.199 52.381 0.00 0.00 0.00 2.87
1890 1910 0.034896 TGTCCTTCGCACCTTCTTCC 59.965 55.000 0.00 0.00 0.00 3.46
1979 1999 3.306364 CCTTATAAGCTCTCCCGGTGATG 60.306 52.174 6.99 0.00 0.00 3.07
2049 2069 3.550437 ATCGTCCAAGAAAGAGATGGG 57.450 47.619 0.00 0.00 34.89 4.00
2162 2182 2.584236 TCTAACTCGGAGCCATAGGAC 58.416 52.381 4.58 0.00 0.00 3.85
2195 2215 4.354587 CAAGCTTGAACACAAACTTCTCC 58.645 43.478 22.31 0.00 30.68 3.71
2203 2223 4.706842 ACACAAACTTCTCCAGTGGTAT 57.293 40.909 9.54 0.00 35.12 2.73
2204 2224 4.389374 ACACAAACTTCTCCAGTGGTATG 58.611 43.478 9.54 4.07 35.12 2.39
2216 2236 4.285775 TCCAGTGGTATGTGATCTTTGTCA 59.714 41.667 9.54 0.00 0.00 3.58
2225 2245 6.694877 ATGTGATCTTTGTCATGGAAGATG 57.305 37.500 18.32 0.00 41.39 2.90
2228 2248 5.065731 GTGATCTTTGTCATGGAAGATGACC 59.934 44.000 18.32 9.39 45.70 4.02
2231 2251 3.786368 TTGTCATGGAAGATGACCACA 57.214 42.857 11.33 0.00 45.70 4.17
2273 2293 6.072119 CCTGGGTTGTAAGAAAACTTATGGTC 60.072 42.308 0.00 0.00 0.00 4.02
2279 2299 9.874215 GTTGTAAGAAAACTTATGGTCAGTTAC 57.126 33.333 0.00 0.00 33.12 2.50
2341 2361 2.820197 GTTTCAACACCAAGGGATCCTC 59.180 50.000 12.58 1.55 30.89 3.71
2342 2362 0.613260 TCAACACCAAGGGATCCTCG 59.387 55.000 12.58 0.00 30.89 4.63
2365 2386 1.138069 TCTCACCGTTGTTGCTGAAGA 59.862 47.619 0.00 0.00 0.00 2.87
2367 2388 3.006430 TCTCACCGTTGTTGCTGAAGATA 59.994 43.478 0.00 0.00 0.00 1.98
2371 2392 4.393062 CACCGTTGTTGCTGAAGATAGAAT 59.607 41.667 0.00 0.00 0.00 2.40
2409 2430 9.781834 TTAATATATTTGTTTCCTTCTTGCACG 57.218 29.630 2.68 0.00 0.00 5.34
2410 2431 2.202295 TTTGTTTCCTTCTTGCACGC 57.798 45.000 0.00 0.00 0.00 5.34
2411 2432 1.388547 TTGTTTCCTTCTTGCACGCT 58.611 45.000 0.00 0.00 0.00 5.07
2412 2433 2.248280 TGTTTCCTTCTTGCACGCTA 57.752 45.000 0.00 0.00 0.00 4.26
2413 2434 2.778299 TGTTTCCTTCTTGCACGCTAT 58.222 42.857 0.00 0.00 0.00 2.97
2414 2435 3.932822 TGTTTCCTTCTTGCACGCTATA 58.067 40.909 0.00 0.00 0.00 1.31
2415 2436 3.682858 TGTTTCCTTCTTGCACGCTATAC 59.317 43.478 0.00 0.00 0.00 1.47
2424 2445 5.449451 TTCTTGCACGCTATACGATACAAGA 60.449 40.000 13.66 13.66 46.30 3.02
2430 2451 4.099380 GCTATACGATACAAGAGCCCTC 57.901 50.000 0.00 0.00 0.00 4.30
2431 2452 3.426426 GCTATACGATACAAGAGCCCTCG 60.426 52.174 0.00 0.00 35.56 4.63
2432 2453 0.666913 TACGATACAAGAGCCCTCGC 59.333 55.000 0.00 0.00 32.81 5.03
2433 2454 1.320344 ACGATACAAGAGCCCTCGCA 61.320 55.000 0.00 0.00 37.52 5.10
2434 2455 0.179111 CGATACAAGAGCCCTCGCAA 60.179 55.000 0.00 0.00 37.52 4.85
2435 2456 1.291132 GATACAAGAGCCCTCGCAAC 58.709 55.000 0.00 0.00 37.52 4.17
2436 2457 0.613260 ATACAAGAGCCCTCGCAACA 59.387 50.000 0.00 0.00 37.52 3.33
2437 2458 0.394938 TACAAGAGCCCTCGCAACAA 59.605 50.000 0.00 0.00 37.52 2.83
2438 2459 0.886490 ACAAGAGCCCTCGCAACAAG 60.886 55.000 0.00 0.00 37.52 3.16
2439 2460 1.968540 AAGAGCCCTCGCAACAAGC 60.969 57.895 0.00 0.00 37.52 4.01
2440 2461 2.669569 GAGCCCTCGCAACAAGCA 60.670 61.111 0.00 0.00 46.13 3.91
2441 2462 2.034687 AGCCCTCGCAACAAGCAT 59.965 55.556 0.00 0.00 46.13 3.79
2442 2463 0.744414 GAGCCCTCGCAACAAGCATA 60.744 55.000 0.00 0.00 46.13 3.14
2443 2464 0.107017 AGCCCTCGCAACAAGCATAT 60.107 50.000 0.00 0.00 46.13 1.78
2444 2465 0.029834 GCCCTCGCAACAAGCATATG 59.970 55.000 0.00 0.00 46.13 1.78
2445 2466 0.664761 CCCTCGCAACAAGCATATGG 59.335 55.000 4.56 0.00 46.13 2.74
2446 2467 1.382522 CCTCGCAACAAGCATATGGT 58.617 50.000 0.40 0.40 46.13 3.55
2447 2468 1.331756 CCTCGCAACAAGCATATGGTC 59.668 52.381 8.07 0.00 46.13 4.02
2448 2469 2.009051 CTCGCAACAAGCATATGGTCA 58.991 47.619 8.07 0.00 46.13 4.02
2449 2470 2.419673 CTCGCAACAAGCATATGGTCAA 59.580 45.455 8.07 0.00 46.13 3.18
2450 2471 2.816672 TCGCAACAAGCATATGGTCAAA 59.183 40.909 8.07 0.00 46.13 2.69
2451 2472 3.254411 TCGCAACAAGCATATGGTCAAAA 59.746 39.130 8.07 0.00 46.13 2.44
2452 2473 3.986572 CGCAACAAGCATATGGTCAAAAA 59.013 39.130 8.07 0.00 46.13 1.94
2472 2493 4.353383 AAAGGAGGAACAGAAGTGTACC 57.647 45.455 0.00 0.00 35.08 3.34
2473 2494 2.972348 AGGAGGAACAGAAGTGTACCA 58.028 47.619 0.00 0.00 35.08 3.25
2474 2495 3.314693 AGGAGGAACAGAAGTGTACCAA 58.685 45.455 0.00 0.00 35.08 3.67
2475 2496 3.714798 AGGAGGAACAGAAGTGTACCAAA 59.285 43.478 0.00 0.00 35.08 3.28
2476 2497 4.165372 AGGAGGAACAGAAGTGTACCAAAA 59.835 41.667 0.00 0.00 35.08 2.44
2477 2498 4.275196 GGAGGAACAGAAGTGTACCAAAAC 59.725 45.833 0.00 0.00 35.08 2.43
2478 2499 5.112129 AGGAACAGAAGTGTACCAAAACT 57.888 39.130 0.00 0.00 35.08 2.66
2479 2500 5.506708 AGGAACAGAAGTGTACCAAAACTT 58.493 37.500 0.00 0.00 39.31 2.66
2480 2501 5.949952 AGGAACAGAAGTGTACCAAAACTTT 59.050 36.000 0.00 0.00 36.77 2.66
2481 2502 7.114095 AGGAACAGAAGTGTACCAAAACTTTA 58.886 34.615 0.00 0.00 36.77 1.85
2482 2503 7.612633 AGGAACAGAAGTGTACCAAAACTTTAA 59.387 33.333 0.00 0.00 36.77 1.52
2483 2504 8.245491 GGAACAGAAGTGTACCAAAACTTTAAA 58.755 33.333 0.00 0.00 36.77 1.52
2484 2505 9.285770 GAACAGAAGTGTACCAAAACTTTAAAG 57.714 33.333 13.76 13.76 36.77 1.85
2485 2506 7.255569 ACAGAAGTGTACCAAAACTTTAAAGC 58.744 34.615 15.24 0.00 36.77 3.51
2486 2507 7.122204 ACAGAAGTGTACCAAAACTTTAAAGCT 59.878 33.333 15.24 0.00 36.77 3.74
2487 2508 7.644157 CAGAAGTGTACCAAAACTTTAAAGCTC 59.356 37.037 15.24 0.00 36.77 4.09
2488 2509 7.338449 AGAAGTGTACCAAAACTTTAAAGCTCA 59.662 33.333 15.24 1.20 36.77 4.26
2489 2510 7.399245 AGTGTACCAAAACTTTAAAGCTCAA 57.601 32.000 15.24 0.00 0.00 3.02
2490 2511 7.480810 AGTGTACCAAAACTTTAAAGCTCAAG 58.519 34.615 15.24 4.59 0.00 3.02
2491 2512 6.198403 GTGTACCAAAACTTTAAAGCTCAAGC 59.802 38.462 15.24 0.00 42.49 4.01
2492 2513 5.337578 ACCAAAACTTTAAAGCTCAAGCA 57.662 34.783 15.24 0.00 45.16 3.91
2493 2514 5.109210 ACCAAAACTTTAAAGCTCAAGCAC 58.891 37.500 15.24 0.00 45.16 4.40
2494 2515 5.105351 ACCAAAACTTTAAAGCTCAAGCACT 60.105 36.000 15.24 0.00 45.16 4.40
2495 2516 6.096282 ACCAAAACTTTAAAGCTCAAGCACTA 59.904 34.615 15.24 0.00 45.16 2.74
2496 2517 7.147976 CCAAAACTTTAAAGCTCAAGCACTAT 58.852 34.615 15.24 0.00 45.16 2.12
2497 2518 8.296713 CCAAAACTTTAAAGCTCAAGCACTATA 58.703 33.333 15.24 0.00 45.16 1.31
2498 2519 9.677567 CAAAACTTTAAAGCTCAAGCACTATAA 57.322 29.630 15.24 0.00 45.16 0.98
2501 2522 8.792830 ACTTTAAAGCTCAAGCACTATAATCA 57.207 30.769 15.24 0.00 45.16 2.57
2502 2523 9.231297 ACTTTAAAGCTCAAGCACTATAATCAA 57.769 29.630 15.24 0.00 45.16 2.57
2503 2524 9.495754 CTTTAAAGCTCAAGCACTATAATCAAC 57.504 33.333 1.47 0.00 45.16 3.18
2504 2525 6.442513 AAAGCTCAAGCACTATAATCAACC 57.557 37.500 4.59 0.00 45.16 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.669795 GCTTGCAGTATTTGGGCACAC 60.670 52.381 0.00 0.00 37.26 3.82
120 122 5.594317 AGTTGCACTCCTTTCAAAATACTGT 59.406 36.000 0.00 0.00 0.00 3.55
165 168 3.146847 GTTTCGTCCATTCCCAACTCTT 58.853 45.455 0.00 0.00 0.00 2.85
429 434 1.347707 CCTTGTAGGCTGACTTCACCA 59.652 52.381 0.00 0.00 0.00 4.17
633 639 7.147655 GGCATCTACTATCTATTTCCATGCCTA 60.148 40.741 11.08 0.00 46.83 3.93
693 699 6.852345 CACCATTTTGCATTTAAGAAAACAGC 59.148 34.615 0.00 0.00 32.43 4.40
760 766 4.994852 GGATCGTTGCATAACATTAGCCTA 59.005 41.667 0.00 0.00 36.58 3.93
762 768 3.815401 AGGATCGTTGCATAACATTAGCC 59.185 43.478 0.00 0.00 36.58 3.93
871 879 4.816925 GTGTCTCCTACATTGGCCTTATTC 59.183 45.833 3.32 0.00 41.10 1.75
1011 1019 2.955660 ACTTTCAGGAATTCGTTTGCCA 59.044 40.909 0.00 0.00 0.00 4.92
1040 1048 1.182667 GCTTCCTTAAACGCCCCATT 58.817 50.000 0.00 0.00 0.00 3.16
1340 1352 9.143155 TCTAGGACATACATTCAGCTTAACATA 57.857 33.333 0.00 0.00 0.00 2.29
1482 1494 5.390567 CCTTACGATGACAAACTGGCTAAAC 60.391 44.000 0.00 0.00 0.00 2.01
1728 1748 0.326264 AACCTGGACCATCAGCAGAC 59.674 55.000 0.00 0.00 33.64 3.51
1884 1904 3.995809 ATCCCTCCCCGCGGAAGAA 62.996 63.158 30.73 14.76 37.86 2.52
1893 1913 0.832559 CCTACTTCCGATCCCTCCCC 60.833 65.000 0.00 0.00 0.00 4.81
1960 1980 2.248248 CCATCACCGGGAGAGCTTATA 58.752 52.381 6.32 0.00 0.00 0.98
1979 1999 2.125512 CAGCCAGCGGTGACTACC 60.126 66.667 17.83 0.00 43.89 3.18
2138 2158 3.637229 CCTATGGCTCCGAGTTAGAAGAA 59.363 47.826 0.00 0.00 0.00 2.52
2141 2161 2.957006 GTCCTATGGCTCCGAGTTAGAA 59.043 50.000 0.00 0.00 0.00 2.10
2162 2182 1.311859 TCAAGCTTGCAGTCAACCAG 58.688 50.000 21.99 0.00 0.00 4.00
2195 2215 5.065602 CCATGACAAAGATCACATACCACTG 59.934 44.000 0.00 0.00 0.00 3.66
2203 2223 5.645067 GTCATCTTCCATGACAAAGATCACA 59.355 40.000 9.40 0.00 45.61 3.58
2204 2224 6.116680 GTCATCTTCCATGACAAAGATCAC 57.883 41.667 9.40 8.50 45.61 3.06
2216 2236 1.995542 AGGGTTGTGGTCATCTTCCAT 59.004 47.619 0.00 0.00 37.30 3.41
2225 2245 0.472471 TGGTTGAGAGGGTTGTGGTC 59.528 55.000 0.00 0.00 0.00 4.02
2228 2248 1.543429 GGACTGGTTGAGAGGGTTGTG 60.543 57.143 0.00 0.00 0.00 3.33
2231 2251 0.104409 AGGGACTGGTTGAGAGGGTT 60.104 55.000 0.00 0.00 37.18 4.11
2273 2293 3.243068 GGCTGGTTGTGTCTTTGTAACTG 60.243 47.826 0.00 0.00 0.00 3.16
2279 2299 1.679139 TCAGGCTGGTTGTGTCTTTG 58.321 50.000 15.73 0.00 0.00 2.77
2342 2362 0.798776 CAGCAACAACGGTGAGATCC 59.201 55.000 7.88 0.00 36.48 3.36
2350 2370 4.631377 TGATTCTATCTTCAGCAACAACGG 59.369 41.667 0.00 0.00 0.00 4.44
2352 2372 7.020010 CACTTGATTCTATCTTCAGCAACAAC 58.980 38.462 0.00 0.00 0.00 3.32
2385 2406 6.751888 GCGTGCAAGAAGGAAACAAATATATT 59.248 34.615 2.99 0.00 0.00 1.28
2391 2412 1.748493 AGCGTGCAAGAAGGAAACAAA 59.252 42.857 2.99 0.00 0.00 2.83
2392 2413 1.388547 AGCGTGCAAGAAGGAAACAA 58.611 45.000 2.99 0.00 0.00 2.83
2393 2414 2.248280 TAGCGTGCAAGAAGGAAACA 57.752 45.000 2.99 0.00 0.00 2.83
2394 2415 3.241995 CGTATAGCGTGCAAGAAGGAAAC 60.242 47.826 2.99 0.00 35.54 2.78
2395 2416 2.927477 CGTATAGCGTGCAAGAAGGAAA 59.073 45.455 2.99 0.00 35.54 3.13
2396 2417 2.164827 TCGTATAGCGTGCAAGAAGGAA 59.835 45.455 2.99 0.00 42.13 3.36
2397 2418 1.746787 TCGTATAGCGTGCAAGAAGGA 59.253 47.619 2.99 0.00 42.13 3.36
2398 2419 2.203800 TCGTATAGCGTGCAAGAAGG 57.796 50.000 2.99 0.00 42.13 3.46
2399 2420 4.287720 TGTATCGTATAGCGTGCAAGAAG 58.712 43.478 2.99 0.00 42.13 2.85
2400 2421 4.295857 TGTATCGTATAGCGTGCAAGAA 57.704 40.909 2.99 0.00 42.13 2.52
2401 2422 3.974871 TGTATCGTATAGCGTGCAAGA 57.025 42.857 2.99 0.00 42.13 3.02
2402 2423 4.287720 TCTTGTATCGTATAGCGTGCAAG 58.712 43.478 0.00 0.00 40.99 4.01
2403 2424 4.287720 CTCTTGTATCGTATAGCGTGCAA 58.712 43.478 0.00 0.00 42.13 4.08
2404 2425 3.852205 GCTCTTGTATCGTATAGCGTGCA 60.852 47.826 0.00 0.00 42.13 4.57
2405 2426 2.657372 GCTCTTGTATCGTATAGCGTGC 59.343 50.000 0.00 0.00 42.13 5.34
2406 2427 3.235195 GGCTCTTGTATCGTATAGCGTG 58.765 50.000 0.00 0.00 42.13 5.34
2407 2428 2.228343 GGGCTCTTGTATCGTATAGCGT 59.772 50.000 0.00 0.00 42.13 5.07
2408 2429 2.488545 AGGGCTCTTGTATCGTATAGCG 59.511 50.000 0.00 0.00 43.01 4.26
2409 2430 3.426426 CGAGGGCTCTTGTATCGTATAGC 60.426 52.174 0.00 0.00 0.00 2.97
2410 2431 3.426426 GCGAGGGCTCTTGTATCGTATAG 60.426 52.174 1.91 0.00 35.87 1.31
2411 2432 2.486982 GCGAGGGCTCTTGTATCGTATA 59.513 50.000 1.91 0.00 35.87 1.47
2412 2433 1.269998 GCGAGGGCTCTTGTATCGTAT 59.730 52.381 1.91 0.00 35.87 3.06
2413 2434 0.666913 GCGAGGGCTCTTGTATCGTA 59.333 55.000 1.91 0.00 35.87 3.43
2414 2435 1.320344 TGCGAGGGCTCTTGTATCGT 61.320 55.000 1.91 0.00 40.82 3.73
2415 2436 0.179111 TTGCGAGGGCTCTTGTATCG 60.179 55.000 1.91 0.00 40.82 2.92
2416 2437 1.291132 GTTGCGAGGGCTCTTGTATC 58.709 55.000 1.91 0.00 40.82 2.24
2417 2438 0.613260 TGTTGCGAGGGCTCTTGTAT 59.387 50.000 1.91 0.00 40.82 2.29
2418 2439 0.394938 TTGTTGCGAGGGCTCTTGTA 59.605 50.000 1.91 0.00 40.82 2.41
2419 2440 0.886490 CTTGTTGCGAGGGCTCTTGT 60.886 55.000 1.91 0.00 40.82 3.16
2420 2441 1.871772 CTTGTTGCGAGGGCTCTTG 59.128 57.895 0.00 0.00 40.82 3.02
2421 2442 1.968540 GCTTGTTGCGAGGGCTCTT 60.969 57.895 0.00 0.00 40.82 2.85
2422 2443 2.359230 GCTTGTTGCGAGGGCTCT 60.359 61.111 0.00 0.00 40.82 4.09
2423 2444 0.744414 TATGCTTGTTGCGAGGGCTC 60.744 55.000 0.00 0.00 46.63 4.70
2424 2445 0.107017 ATATGCTTGTTGCGAGGGCT 60.107 50.000 0.00 0.00 46.63 5.19
2425 2446 0.029834 CATATGCTTGTTGCGAGGGC 59.970 55.000 0.00 0.00 46.63 5.19
2426 2447 0.664761 CCATATGCTTGTTGCGAGGG 59.335 55.000 0.00 0.00 46.63 4.30
2427 2448 1.331756 GACCATATGCTTGTTGCGAGG 59.668 52.381 0.00 0.00 46.63 4.63
2428 2449 2.009051 TGACCATATGCTTGTTGCGAG 58.991 47.619 0.00 0.00 46.63 5.03
2429 2450 2.106477 TGACCATATGCTTGTTGCGA 57.894 45.000 0.00 0.00 46.63 5.10
2430 2451 2.917701 TTGACCATATGCTTGTTGCG 57.082 45.000 0.00 0.00 46.63 4.85
2449 2470 5.131067 GGTACACTTCTGTTCCTCCTTTTT 58.869 41.667 0.00 0.00 35.45 1.94
2450 2471 4.165372 TGGTACACTTCTGTTCCTCCTTTT 59.835 41.667 0.00 0.00 38.40 2.27
2451 2472 3.714798 TGGTACACTTCTGTTCCTCCTTT 59.285 43.478 0.00 0.00 38.40 3.11
2452 2473 3.314693 TGGTACACTTCTGTTCCTCCTT 58.685 45.455 0.00 0.00 38.40 3.36
2453 2474 2.972348 TGGTACACTTCTGTTCCTCCT 58.028 47.619 0.00 0.00 38.40 3.69
2454 2475 3.764237 TTGGTACACTTCTGTTCCTCC 57.236 47.619 0.00 0.00 39.29 4.30
2455 2476 5.123936 AGTTTTGGTACACTTCTGTTCCTC 58.876 41.667 0.00 0.00 39.29 3.71
2456 2477 5.112129 AGTTTTGGTACACTTCTGTTCCT 57.888 39.130 0.00 0.00 39.29 3.36
2457 2478 5.830000 AAGTTTTGGTACACTTCTGTTCC 57.170 39.130 0.00 0.00 39.29 3.62
2458 2479 9.285770 CTTTAAAGTTTTGGTACACTTCTGTTC 57.714 33.333 7.07 0.00 39.29 3.18
2459 2480 7.758076 GCTTTAAAGTTTTGGTACACTTCTGTT 59.242 33.333 16.38 0.00 39.29 3.16
2460 2481 7.122204 AGCTTTAAAGTTTTGGTACACTTCTGT 59.878 33.333 16.38 0.00 39.29 3.41
2461 2482 7.480810 AGCTTTAAAGTTTTGGTACACTTCTG 58.519 34.615 16.38 0.00 39.29 3.02
2462 2483 7.338449 TGAGCTTTAAAGTTTTGGTACACTTCT 59.662 33.333 16.38 0.10 39.29 2.85
2463 2484 7.477494 TGAGCTTTAAAGTTTTGGTACACTTC 58.523 34.615 16.38 0.00 39.29 3.01
2464 2485 7.399245 TGAGCTTTAAAGTTTTGGTACACTT 57.601 32.000 16.38 0.00 39.29 3.16
2465 2486 7.399245 TTGAGCTTTAAAGTTTTGGTACACT 57.601 32.000 16.38 1.19 39.29 3.55
2466 2487 6.198403 GCTTGAGCTTTAAAGTTTTGGTACAC 59.802 38.462 16.38 0.00 36.41 2.90
2467 2488 6.127591 TGCTTGAGCTTTAAAGTTTTGGTACA 60.128 34.615 16.38 1.44 42.66 2.90
2468 2489 6.198403 GTGCTTGAGCTTTAAAGTTTTGGTAC 59.802 38.462 16.38 9.73 42.66 3.34
2469 2490 6.096282 AGTGCTTGAGCTTTAAAGTTTTGGTA 59.904 34.615 16.38 2.38 42.66 3.25
2470 2491 5.105351 AGTGCTTGAGCTTTAAAGTTTTGGT 60.105 36.000 16.38 0.00 42.66 3.67
2471 2492 5.351458 AGTGCTTGAGCTTTAAAGTTTTGG 58.649 37.500 16.38 6.05 42.66 3.28
2472 2493 9.677567 TTATAGTGCTTGAGCTTTAAAGTTTTG 57.322 29.630 16.38 6.36 42.66 2.44
2475 2496 9.231297 TGATTATAGTGCTTGAGCTTTAAAGTT 57.769 29.630 16.38 10.74 42.66 2.66
2476 2497 8.792830 TGATTATAGTGCTTGAGCTTTAAAGT 57.207 30.769 16.38 3.79 42.66 2.66
2477 2498 9.495754 GTTGATTATAGTGCTTGAGCTTTAAAG 57.504 33.333 11.02 11.02 42.66 1.85
2478 2499 8.458843 GGTTGATTATAGTGCTTGAGCTTTAAA 58.541 33.333 4.44 0.00 42.66 1.52
2479 2500 7.985476 GGTTGATTATAGTGCTTGAGCTTTAA 58.015 34.615 4.44 0.00 42.66 1.52
2480 2501 7.553881 GGTTGATTATAGTGCTTGAGCTTTA 57.446 36.000 4.44 0.00 42.66 1.85
2481 2502 6.442513 GGTTGATTATAGTGCTTGAGCTTT 57.557 37.500 4.44 0.00 42.66 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.