Multiple sequence alignment - TraesCS7B01G162600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G162600 chr7B 100.000 3816 0 0 1 3816 223180716 223184531 0.000000e+00 7047
1 TraesCS7B01G162600 chr7B 95.827 695 28 1 3122 3816 11652802 11652109 0.000000e+00 1122
2 TraesCS7B01G162600 chr7D 90.283 1451 104 19 882 2315 246828707 246830137 0.000000e+00 1864
3 TraesCS7B01G162600 chr7D 87.053 811 58 22 2316 3098 246830186 246830977 0.000000e+00 872
4 TraesCS7B01G162600 chr7D 84.687 862 57 26 11 824 246827633 246828467 0.000000e+00 791
5 TraesCS7B01G162600 chr7A 90.405 1407 102 16 925 2315 263731084 263732473 0.000000e+00 1820
6 TraesCS7B01G162600 chr7A 88.211 721 42 22 2321 3010 263732527 263733235 0.000000e+00 821
7 TraesCS7B01G162600 chr7A 91.482 587 15 10 327 899 263730064 263730629 0.000000e+00 774
8 TraesCS7B01G162600 chr7A 85.623 313 16 7 11 309 263729680 263729977 6.200000e-78 302
9 TraesCS7B01G162600 chr7A 88.372 86 6 2 3008 3089 263733338 263733423 2.430000e-17 100
10 TraesCS7B01G162600 chr2B 95.304 724 27 2 3099 3816 53272355 53273077 0.000000e+00 1142
11 TraesCS7B01G162600 chr3B 94.405 697 35 3 3122 3816 823512465 823513159 0.000000e+00 1068
12 TraesCS7B01G162600 chr3B 91.236 696 48 6 3126 3816 758469208 758469895 0.000000e+00 935
13 TraesCS7B01G162600 chr3B 90.051 583 26 6 3248 3816 680318606 680319170 0.000000e+00 726
14 TraesCS7B01G162600 chr3B 89.464 541 28 4 3287 3816 52865696 52866218 0.000000e+00 656
15 TraesCS7B01G162600 chr6B 94.278 699 31 2 3122 3816 46648437 46647744 0.000000e+00 1061
16 TraesCS7B01G162600 chr3D 92.550 698 36 5 3122 3816 451221827 451221143 0.000000e+00 987
17 TraesCS7B01G162600 chr3D 90.897 725 47 4 3099 3816 132562787 132562075 0.000000e+00 955
18 TraesCS7B01G162600 chr3D 91.441 701 41 9 3122 3816 134848107 134848794 0.000000e+00 944
19 TraesCS7B01G162600 chr4D 91.570 688 43 4 3131 3816 25354713 25354039 0.000000e+00 935
20 TraesCS7B01G162600 chr4A 90.085 706 35 9 3122 3816 673147734 673148415 0.000000e+00 883
21 TraesCS7B01G162600 chr1B 81.007 695 118 10 1095 1787 639444577 639443895 1.210000e-149 540
22 TraesCS7B01G162600 chr1B 93.204 103 7 0 2422 2524 17882350 17882452 6.600000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G162600 chr7B 223180716 223184531 3815 False 7047.000000 7047 100.0000 1 3816 1 chr7B.!!$F1 3815
1 TraesCS7B01G162600 chr7B 11652109 11652802 693 True 1122.000000 1122 95.8270 3122 3816 1 chr7B.!!$R1 694
2 TraesCS7B01G162600 chr7D 246827633 246830977 3344 False 1175.666667 1864 87.3410 11 3098 3 chr7D.!!$F1 3087
3 TraesCS7B01G162600 chr7A 263729680 263733423 3743 False 763.400000 1820 88.8186 11 3089 5 chr7A.!!$F1 3078
4 TraesCS7B01G162600 chr2B 53272355 53273077 722 False 1142.000000 1142 95.3040 3099 3816 1 chr2B.!!$F1 717
5 TraesCS7B01G162600 chr3B 823512465 823513159 694 False 1068.000000 1068 94.4050 3122 3816 1 chr3B.!!$F4 694
6 TraesCS7B01G162600 chr3B 758469208 758469895 687 False 935.000000 935 91.2360 3126 3816 1 chr3B.!!$F3 690
7 TraesCS7B01G162600 chr3B 680318606 680319170 564 False 726.000000 726 90.0510 3248 3816 1 chr3B.!!$F2 568
8 TraesCS7B01G162600 chr3B 52865696 52866218 522 False 656.000000 656 89.4640 3287 3816 1 chr3B.!!$F1 529
9 TraesCS7B01G162600 chr6B 46647744 46648437 693 True 1061.000000 1061 94.2780 3122 3816 1 chr6B.!!$R1 694
10 TraesCS7B01G162600 chr3D 451221143 451221827 684 True 987.000000 987 92.5500 3122 3816 1 chr3D.!!$R2 694
11 TraesCS7B01G162600 chr3D 132562075 132562787 712 True 955.000000 955 90.8970 3099 3816 1 chr3D.!!$R1 717
12 TraesCS7B01G162600 chr3D 134848107 134848794 687 False 944.000000 944 91.4410 3122 3816 1 chr3D.!!$F1 694
13 TraesCS7B01G162600 chr4D 25354039 25354713 674 True 935.000000 935 91.5700 3131 3816 1 chr4D.!!$R1 685
14 TraesCS7B01G162600 chr4A 673147734 673148415 681 False 883.000000 883 90.0850 3122 3816 1 chr4A.!!$F1 694
15 TraesCS7B01G162600 chr1B 639443895 639444577 682 True 540.000000 540 81.0070 1095 1787 1 chr1B.!!$R1 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 836 0.873054 TTCACACTCCTCGACTCGTC 59.127 55.0 0.00 0.00 0.00 4.20 F
1327 1994 0.098376 GAGCTCTGATGCGCAAAAGG 59.902 55.0 17.11 10.09 38.13 3.11 F
1676 2346 0.040067 CTCAAAGCAGGGTTCAACGC 60.040 55.0 0.00 0.00 0.00 4.84 F
2494 3226 0.037326 ACATTGTCGGCATGTCGAGT 60.037 50.0 24.93 14.73 40.01 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1657 2327 0.040067 GCGTTGAACCCTGCTTTGAG 60.040 55.0 0.00 0.0 0.00 3.02 R
2128 2803 0.106569 TCCATTACCTGGCCATGCAG 60.107 55.0 5.51 0.0 45.52 4.41 R
2699 3433 0.602562 CGGAAAGAAAATGGGCTGCA 59.397 50.0 0.50 0.0 0.00 4.41 R
3401 4299 2.290896 GGGATGGGATGTCAGTTTCACA 60.291 50.0 0.00 0.0 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 3.515602 AAATCCACTGGCAGAGAAACT 57.484 42.857 23.66 4.13 0.00 2.66
64 65 7.532209 GCAGAGAAACTTTTTCGTCTTTAGATG 59.468 37.037 0.00 0.00 0.00 2.90
73 74 5.723672 TTCGTCTTTAGATGTCCTCTTGT 57.276 39.130 0.00 0.00 35.28 3.16
85 86 1.608717 CCTCTTGTCCCAGTCCCGAG 61.609 65.000 0.00 0.00 0.00 4.63
133 134 9.393512 AGGAAAATGTTTGTGATTCATCAAAAA 57.606 25.926 12.73 1.55 40.65 1.94
201 202 5.522460 TCGTCCTTGTAGTATTTATTGCTGC 59.478 40.000 0.00 0.00 0.00 5.25
206 207 6.968904 CCTTGTAGTATTTATTGCTGCTTGTG 59.031 38.462 0.00 0.00 0.00 3.33
500 615 4.502259 CCTGTGAAAGCTACTGTCTTCTGT 60.502 45.833 0.00 0.00 0.00 3.41
501 616 5.279006 CCTGTGAAAGCTACTGTCTTCTGTA 60.279 44.000 0.00 0.00 0.00 2.74
502 617 6.346477 TGTGAAAGCTACTGTCTTCTGTAT 57.654 37.500 0.00 0.00 0.00 2.29
503 618 6.759272 TGTGAAAGCTACTGTCTTCTGTATT 58.241 36.000 0.00 0.00 0.00 1.89
504 619 7.217200 TGTGAAAGCTACTGTCTTCTGTATTT 58.783 34.615 0.00 0.00 0.00 1.40
543 658 1.473434 GGGGAGATTACCACGAAGCAG 60.473 57.143 0.00 0.00 0.00 4.24
616 735 3.628942 TCAAGTATTCATGTGGATGCTGC 59.371 43.478 0.00 0.00 0.00 5.25
623 742 1.822990 CATGTGGATGCTGCCTTTCTT 59.177 47.619 0.00 0.00 0.00 2.52
637 756 3.623510 GCCTTTCTTGACATGCCTAGTAC 59.376 47.826 0.00 0.00 0.00 2.73
651 770 3.557264 GCCTAGTACAACTTTCAGCCAGT 60.557 47.826 0.00 0.00 0.00 4.00
652 771 4.642429 CCTAGTACAACTTTCAGCCAGTT 58.358 43.478 0.00 0.00 34.67 3.16
678 797 3.181429 ACCTTCCTTGCTCTTCAATGGAA 60.181 43.478 0.00 0.00 38.47 3.53
679 798 4.021916 CCTTCCTTGCTCTTCAATGGAAT 58.978 43.478 0.00 0.00 39.23 3.01
712 831 1.704070 GAGCTTTCACACTCCTCGAC 58.296 55.000 0.00 0.00 0.00 4.20
713 832 1.271102 GAGCTTTCACACTCCTCGACT 59.729 52.381 0.00 0.00 0.00 4.18
714 833 1.271102 AGCTTTCACACTCCTCGACTC 59.729 52.381 0.00 0.00 0.00 3.36
715 834 1.970447 CTTTCACACTCCTCGACTCG 58.030 55.000 0.00 0.00 0.00 4.18
716 835 1.267261 CTTTCACACTCCTCGACTCGT 59.733 52.381 0.00 0.00 0.00 4.18
717 836 0.873054 TTCACACTCCTCGACTCGTC 59.127 55.000 0.00 0.00 0.00 4.20
798 918 5.260424 TGGCAGGCTTGTCTTGAATTAATA 58.740 37.500 0.92 0.00 0.00 0.98
806 926 8.470002 GGCTTGTCTTGAATTAATAAATCTGGT 58.530 33.333 0.00 0.00 0.00 4.00
899 1137 7.100458 TGCTATAAAAGGGCTTTTCTGAATC 57.900 36.000 0.00 0.00 41.39 2.52
900 1138 6.663093 TGCTATAAAAGGGCTTTTCTGAATCA 59.337 34.615 0.00 0.00 41.39 2.57
1081 1748 0.671781 CTCTGAAGCCCTCAACGTGG 60.672 60.000 0.00 0.00 32.17 4.94
1167 1834 6.366332 CAGTCTCAAACAAGTACTACCATGAC 59.634 42.308 0.00 0.00 0.00 3.06
1296 1963 4.855715 TGCAGTACCATACTATGCTCTC 57.144 45.455 3.14 0.00 37.23 3.20
1300 1967 5.777802 CAGTACCATACTATGCTCTCAAGG 58.222 45.833 0.00 0.00 37.23 3.61
1304 1971 4.716784 ACCATACTATGCTCTCAAGGACAA 59.283 41.667 0.00 0.00 0.00 3.18
1312 1979 1.622811 CTCTCAAGGACAACCAGAGCT 59.377 52.381 0.00 0.00 39.09 4.09
1314 1981 1.622811 CTCAAGGACAACCAGAGCTCT 59.377 52.381 11.45 11.45 38.94 4.09
1318 1985 1.554160 AGGACAACCAGAGCTCTGATG 59.446 52.381 39.34 34.67 46.59 3.07
1326 1993 1.085091 AGAGCTCTGATGCGCAAAAG 58.915 50.000 17.42 15.62 38.13 2.27
1327 1994 0.098376 GAGCTCTGATGCGCAAAAGG 59.902 55.000 17.11 10.09 38.13 3.11
1332 1999 0.109132 CTGATGCGCAAAAGGTTCCC 60.109 55.000 17.11 0.00 0.00 3.97
1333 2000 1.154035 GATGCGCAAAAGGTTCCCG 60.154 57.895 17.11 0.00 0.00 5.14
1334 2001 3.281359 ATGCGCAAAAGGTTCCCGC 62.281 57.895 17.11 0.00 44.39 6.13
1345 2015 1.818674 AGGTTCCCGCAATGCTTAAAG 59.181 47.619 2.94 0.00 0.00 1.85
1367 2037 2.681848 GGAATGATGGAGTGTGCAAGAG 59.318 50.000 0.00 0.00 0.00 2.85
1368 2038 3.603532 GAATGATGGAGTGTGCAAGAGA 58.396 45.455 0.00 0.00 0.00 3.10
1369 2039 2.756840 TGATGGAGTGTGCAAGAGAG 57.243 50.000 0.00 0.00 0.00 3.20
1455 2125 1.463674 ATGGAATTGAGACCGGCAAC 58.536 50.000 0.00 0.00 0.00 4.17
1492 2162 2.947127 AGGCTATGAGGAGAAATGGC 57.053 50.000 0.00 0.00 0.00 4.40
1518 2188 3.494251 TCAATATTCATGCCATCGACACG 59.506 43.478 0.00 0.00 0.00 4.49
1566 2236 1.488957 CGAGTGCAAGTGCGACTTC 59.511 57.895 8.93 0.08 45.83 3.01
1600 2270 0.179076 TGATGAGTATGGGCGCACAG 60.179 55.000 21.09 0.00 0.00 3.66
1624 2294 1.343465 CGAAGAACTACACTGGTGGGT 59.657 52.381 5.70 1.49 34.19 4.51
1664 2334 2.328099 CCCAGTGTCGGCTCAAAGC 61.328 63.158 0.00 0.00 41.46 3.51
1674 2344 0.315251 GGCTCAAAGCAGGGTTCAAC 59.685 55.000 0.86 0.00 44.75 3.18
1676 2346 0.040067 CTCAAAGCAGGGTTCAACGC 60.040 55.000 0.00 0.00 0.00 4.84
1713 2383 1.037493 TCTTGCAGTACACCGTGACT 58.963 50.000 5.28 1.83 0.00 3.41
1788 2458 0.454620 CGGATACCGCTATGCTCGAC 60.455 60.000 0.00 0.00 41.17 4.20
1796 2466 1.725557 GCTATGCTCGACGGGACTCA 61.726 60.000 0.00 0.00 0.00 3.41
1803 2473 0.242825 TCGACGGGACTCATGAACAC 59.757 55.000 0.00 0.00 0.00 3.32
1844 2517 2.518349 CCCAGTTGCCACAACGGT 60.518 61.111 15.21 0.00 36.97 4.83
1845 2518 2.721231 CCAGTTGCCACAACGGTG 59.279 61.111 0.00 0.00 44.85 4.94
1860 2533 0.588252 CGGTGGCAACTGTTTCAGAG 59.412 55.000 0.00 0.00 35.18 3.35
1935 2610 6.677781 ACGGGTATTCAAATACACAATCTG 57.322 37.500 13.90 5.19 43.81 2.90
1936 2611 6.411376 ACGGGTATTCAAATACACAATCTGA 58.589 36.000 13.90 0.00 43.81 3.27
1937 2612 6.538742 ACGGGTATTCAAATACACAATCTGAG 59.461 38.462 13.90 0.83 43.81 3.35
1938 2613 6.761242 CGGGTATTCAAATACACAATCTGAGA 59.239 38.462 13.90 0.00 43.81 3.27
1939 2614 7.042456 CGGGTATTCAAATACACAATCTGAGAG 60.042 40.741 13.90 0.00 43.81 3.20
1944 2619 6.946340 TCAAATACACAATCTGAGAGCCTTA 58.054 36.000 0.00 0.00 0.00 2.69
1945 2620 7.044181 TCAAATACACAATCTGAGAGCCTTAG 58.956 38.462 0.00 0.00 0.00 2.18
1946 2621 6.552445 AATACACAATCTGAGAGCCTTAGT 57.448 37.500 0.00 0.00 0.00 2.24
1947 2622 7.661536 AATACACAATCTGAGAGCCTTAGTA 57.338 36.000 0.00 0.00 0.00 1.82
1948 2623 5.590530 ACACAATCTGAGAGCCTTAGTAG 57.409 43.478 0.00 0.00 0.00 2.57
1949 2624 4.404073 ACACAATCTGAGAGCCTTAGTAGG 59.596 45.833 0.00 0.00 45.02 3.18
1950 2625 4.404073 CACAATCTGAGAGCCTTAGTAGGT 59.596 45.833 0.00 0.00 44.00 3.08
1951 2626 5.026790 ACAATCTGAGAGCCTTAGTAGGTT 58.973 41.667 0.00 0.00 44.00 3.50
1952 2627 5.105146 ACAATCTGAGAGCCTTAGTAGGTTG 60.105 44.000 0.00 0.00 44.00 3.77
1953 2628 3.366396 TCTGAGAGCCTTAGTAGGTTGG 58.634 50.000 0.00 0.00 44.00 3.77
1962 2637 6.178324 AGCCTTAGTAGGTTGGTTTATGAAC 58.822 40.000 0.00 0.00 44.00 3.18
1966 2641 9.379791 CCTTAGTAGGTTGGTTTATGAACTAAG 57.620 37.037 10.49 10.49 42.13 2.18
1973 2648 6.071616 GGTTGGTTTATGAACTAAGCCATTGA 60.072 38.462 15.00 0.00 46.36 2.57
2010 2685 1.915614 AAGTTGAGGAATGCAGCGCG 61.916 55.000 0.00 0.00 0.00 6.86
2050 2725 7.069950 ACAATGAGTGCATCCATACTAAGACTA 59.930 37.037 4.53 0.00 32.35 2.59
2052 2727 5.302059 TGAGTGCATCCATACTAAGACTACC 59.698 44.000 0.00 0.00 0.00 3.18
2087 2762 1.878088 GCGTGGAGGAGATATCGTGTA 59.122 52.381 0.00 0.00 0.00 2.90
2097 2772 4.421058 GAGATATCGTGTACAGTGTTGCA 58.579 43.478 0.00 0.00 0.00 4.08
2109 2784 1.224315 TGTTGCACACCAGCACTCT 59.776 52.632 0.00 0.00 45.61 3.24
2128 2803 1.251527 TGGAGGAGTCGGTGCTTCTC 61.252 60.000 3.31 3.31 39.76 2.87
2166 2841 2.037251 GGATTAGCACCCTGATCGCTTA 59.963 50.000 0.00 0.00 35.52 3.09
2167 2842 3.307059 GGATTAGCACCCTGATCGCTTAT 60.307 47.826 0.00 0.00 35.52 1.73
2169 2844 1.123077 AGCACCCTGATCGCTTATCA 58.877 50.000 0.00 0.00 42.48 2.15
2200 2876 7.391554 TGCTTATGCACTTCTCAAGAGTTATTT 59.608 33.333 0.00 0.00 45.31 1.40
2205 2881 6.767902 TGCACTTCTCAAGAGTTATTTTGAGT 59.232 34.615 12.38 0.00 46.50 3.41
2212 2888 6.954944 TCAAGAGTTATTTTGAGTGGAAACG 58.045 36.000 0.00 0.00 0.00 3.60
2290 2974 4.154015 TGCAACCAATATTCACTGAGTTCG 59.846 41.667 0.00 0.00 0.00 3.95
2292 2976 5.671329 GCAACCAATATTCACTGAGTTCGAC 60.671 44.000 0.00 0.00 0.00 4.20
2306 2990 7.759886 CACTGAGTTCGACTAATTCCTGAATTA 59.240 37.037 10.90 10.90 40.99 1.40
2315 2999 7.011389 CGACTAATTCCTGAATTACATGCTCAA 59.989 37.037 7.98 0.00 40.99 3.02
2317 3001 9.851686 ACTAATTCCTGAATTACATGCTCAATA 57.148 29.630 7.98 0.00 40.99 1.90
2356 3088 4.829064 TGGTAACATCACAAGTTCTTGC 57.171 40.909 11.79 0.00 46.17 4.01
2358 3090 3.568007 GGTAACATCACAAGTTCTTGCCA 59.432 43.478 11.79 0.40 0.00 4.92
2359 3091 4.037446 GGTAACATCACAAGTTCTTGCCAA 59.963 41.667 11.79 0.00 0.00 4.52
2360 3092 4.734398 AACATCACAAGTTCTTGCCAAA 57.266 36.364 11.79 0.00 0.00 3.28
2362 3094 3.068590 ACATCACAAGTTCTTGCCAAAGG 59.931 43.478 11.79 1.32 33.90 3.11
2364 3096 3.360867 TCACAAGTTCTTGCCAAAGGAA 58.639 40.909 11.79 0.00 33.90 3.36
2365 3097 3.766591 TCACAAGTTCTTGCCAAAGGAAA 59.233 39.130 11.79 0.00 33.90 3.13
2366 3098 4.221703 TCACAAGTTCTTGCCAAAGGAAAA 59.778 37.500 11.79 0.00 33.90 2.29
2367 3099 4.567959 CACAAGTTCTTGCCAAAGGAAAAG 59.432 41.667 11.79 0.00 33.90 2.27
2368 3100 4.466015 ACAAGTTCTTGCCAAAGGAAAAGA 59.534 37.500 11.79 0.00 33.90 2.52
2388 3120 6.435292 AAGAAAGCCTAACTTCTGAGGTAA 57.565 37.500 0.00 0.00 37.75 2.85
2392 3124 7.608376 AGAAAGCCTAACTTCTGAGGTAAATTC 59.392 37.037 0.00 0.00 37.75 2.17
2419 3151 2.307768 CTACAGGATGGACGCCTTCTA 58.692 52.381 10.18 0.00 43.62 2.10
2470 3202 3.706373 GAGGCAGGGAACGAGGCA 61.706 66.667 0.00 0.00 38.06 4.75
2479 3211 2.039879 AGGGAACGAGGCAAACTACATT 59.960 45.455 0.00 0.00 0.00 2.71
2482 3214 3.120304 GGAACGAGGCAAACTACATTGTC 60.120 47.826 0.00 0.00 35.14 3.18
2493 3225 1.854743 CTACATTGTCGGCATGTCGAG 59.145 52.381 24.93 14.00 40.01 4.04
2494 3226 0.037326 ACATTGTCGGCATGTCGAGT 60.037 50.000 24.93 14.73 40.01 4.18
2572 3304 1.080772 CAACTACAGCAGCGACCGA 60.081 57.895 0.00 0.00 0.00 4.69
2573 3305 1.073216 CAACTACAGCAGCGACCGAG 61.073 60.000 0.00 0.00 0.00 4.63
2659 3391 2.242043 CCATCCCTGTGCTTCAGTTTT 58.758 47.619 8.23 0.00 42.19 2.43
2662 3394 0.593128 CCCTGTGCTTCAGTTTTCCG 59.407 55.000 8.23 0.00 42.19 4.30
2664 3396 0.040067 CTGTGCTTCAGTTTTCCGGC 60.040 55.000 0.00 0.00 39.17 6.13
2681 3413 1.250840 GGCCCCATGTGAGTTTCACC 61.251 60.000 6.74 0.00 46.40 4.02
2684 3416 2.528564 CCCCATGTGAGTTTCACCAAT 58.471 47.619 6.74 0.00 46.40 3.16
2685 3417 2.899256 CCCCATGTGAGTTTCACCAATT 59.101 45.455 6.74 0.00 46.40 2.32
2694 3428 6.071672 TGTGAGTTTCACCAATTTTTCACTCA 60.072 34.615 6.74 0.00 46.40 3.41
2699 3433 9.230122 AGTTTCACCAATTTTTCACTCATTTTT 57.770 25.926 0.00 0.00 0.00 1.94
2700 3434 9.276397 GTTTCACCAATTTTTCACTCATTTTTG 57.724 29.630 0.00 0.00 0.00 2.44
2701 3435 7.014092 TCACCAATTTTTCACTCATTTTTGC 57.986 32.000 0.00 0.00 0.00 3.68
2702 3436 6.596888 TCACCAATTTTTCACTCATTTTTGCA 59.403 30.769 0.00 0.00 0.00 4.08
2703 3437 6.908284 CACCAATTTTTCACTCATTTTTGCAG 59.092 34.615 0.00 0.00 0.00 4.41
2705 3439 5.678132 ATTTTTCACTCATTTTTGCAGCC 57.322 34.783 0.00 0.00 0.00 4.85
2706 3440 2.818130 TTCACTCATTTTTGCAGCCC 57.182 45.000 0.00 0.00 0.00 5.19
2707 3441 1.702182 TCACTCATTTTTGCAGCCCA 58.298 45.000 0.00 0.00 0.00 5.36
2708 3442 2.250031 TCACTCATTTTTGCAGCCCAT 58.750 42.857 0.00 0.00 0.00 4.00
2710 3444 3.071312 TCACTCATTTTTGCAGCCCATTT 59.929 39.130 0.00 0.00 0.00 2.32
2712 3446 4.067192 ACTCATTTTTGCAGCCCATTTTC 58.933 39.130 0.00 0.00 0.00 2.29
2717 3451 2.837532 TTGCAGCCCATTTTCTTTCC 57.162 45.000 0.00 0.00 0.00 3.13
2718 3452 0.602562 TGCAGCCCATTTTCTTTCCG 59.397 50.000 0.00 0.00 0.00 4.30
2721 3455 2.162681 CAGCCCATTTTCTTTCCGAGT 58.837 47.619 0.00 0.00 0.00 4.18
2722 3456 2.095059 CAGCCCATTTTCTTTCCGAGTG 60.095 50.000 0.00 0.00 0.00 3.51
2723 3457 2.159382 GCCCATTTTCTTTCCGAGTGA 58.841 47.619 0.00 0.00 0.00 3.41
2726 3460 4.321974 GCCCATTTTCTTTCCGAGTGAATT 60.322 41.667 0.00 0.00 31.67 2.17
2728 3462 5.402398 CCATTTTCTTTCCGAGTGAATTCC 58.598 41.667 2.27 0.00 31.67 3.01
2729 3463 4.742438 TTTTCTTTCCGAGTGAATTCCG 57.258 40.909 2.27 0.00 31.67 4.30
2733 3470 4.382291 TCTTTCCGAGTGAATTCCGAAAA 58.618 39.130 2.27 0.00 31.67 2.29
2738 3475 3.419915 CGAGTGAATTCCGAAAATGCAG 58.580 45.455 2.27 0.00 0.00 4.41
2751 3488 6.092122 TCCGAAAATGCAGATGTGTAACTAAG 59.908 38.462 0.00 0.00 38.04 2.18
2855 3608 2.159198 CCTGCAATACAAATGGTGAGGC 60.159 50.000 0.00 0.00 0.00 4.70
2870 3623 1.271054 TGAGGCCAGAAGAAGCTGAAC 60.271 52.381 5.01 0.00 38.14 3.18
2879 3632 2.206576 AGAAGCTGAACCAATCACCC 57.793 50.000 0.00 0.00 33.47 4.61
2887 3640 2.378208 TGAACCAATCACCCTGGATCAA 59.622 45.455 0.00 0.00 41.30 2.57
2888 3641 3.011595 TGAACCAATCACCCTGGATCAAT 59.988 43.478 0.00 0.00 41.30 2.57
2889 3642 3.303351 ACCAATCACCCTGGATCAATC 57.697 47.619 0.00 0.00 37.40 2.67
2905 3658 9.860898 CTGGATCAATCATCGTCATAGTTATAA 57.139 33.333 0.00 0.00 31.26 0.98
2959 3715 4.681942 GCTAATATACAGAAGCAGTCACCG 59.318 45.833 0.00 0.00 35.05 4.94
3080 3946 5.155278 TCACCGCCATAAGAAAAACTAGA 57.845 39.130 0.00 0.00 0.00 2.43
3213 4085 4.805231 CGTGTATGTCGCGCCCCA 62.805 66.667 0.00 0.00 42.93 4.96
3313 4195 1.467883 CCCATCTACGCGTACGAAACA 60.468 52.381 21.65 0.00 43.93 2.83
3401 4299 4.274700 CCGTGTCACCGGTGTCGT 62.275 66.667 32.74 0.00 43.07 4.34
3409 4307 0.808453 CACCGGTGTCGTGTGAAACT 60.808 55.000 26.95 0.00 38.74 2.66
3476 4374 4.430765 GTCCACCGCCGTCACGAT 62.431 66.667 0.00 0.00 34.06 3.73
3539 4437 2.738480 GTAGTCACCCACACGCCA 59.262 61.111 0.00 0.00 0.00 5.69
3602 4502 4.203076 GTACGCGCCCTCCACGAT 62.203 66.667 5.73 0.00 0.00 3.73
3661 4563 4.308458 CCCCTCGACGGTGCACAA 62.308 66.667 20.43 0.00 0.00 3.33
3715 4630 5.821470 TGATTTGTCCATTGCATTTTTGTGT 59.179 32.000 0.00 0.00 0.00 3.72
3717 4632 7.660617 TGATTTGTCCATTGCATTTTTGTGTAT 59.339 29.630 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.351418 TGATTCAGCAAAAGATACCGCG 59.649 45.455 0.00 0.00 0.00 6.46
1 2 4.355543 TTGATTCAGCAAAAGATACCGC 57.644 40.909 0.00 0.00 0.00 5.68
2 3 6.122850 TGATTGATTCAGCAAAAGATACCG 57.877 37.500 0.00 0.00 0.00 4.02
28 29 3.515602 AGTTTCTCTGCCAGTGGATTT 57.484 42.857 15.20 0.00 0.00 2.17
48 49 6.990349 ACAAGAGGACATCTAAAGACGAAAAA 59.010 34.615 0.00 0.00 37.23 1.94
64 65 1.889530 CGGGACTGGGACAAGAGGAC 61.890 65.000 0.00 0.00 38.70 3.85
73 74 0.629596 AGTCATACTCGGGACTGGGA 59.370 55.000 0.00 0.00 42.49 4.37
163 164 5.183228 ACAAGGACGACAAGAAGAGAAAAA 58.817 37.500 0.00 0.00 0.00 1.94
206 207 2.543848 CCCATGTATGTATGTGTCGCAC 59.456 50.000 3.44 3.44 34.56 5.34
289 328 1.736681 GAACTGAGAGGTGCATCAAGC 59.263 52.381 0.00 0.00 45.96 4.01
292 331 3.777106 AAAGAACTGAGAGGTGCATCA 57.223 42.857 0.00 0.00 0.00 3.07
500 615 9.062524 CCCCTGTGTCAATTCGATAATAAAATA 57.937 33.333 0.00 0.00 0.00 1.40
501 616 7.777910 TCCCCTGTGTCAATTCGATAATAAAAT 59.222 33.333 0.00 0.00 0.00 1.82
502 617 7.113437 TCCCCTGTGTCAATTCGATAATAAAA 58.887 34.615 0.00 0.00 0.00 1.52
503 618 6.654959 TCCCCTGTGTCAATTCGATAATAAA 58.345 36.000 0.00 0.00 0.00 1.40
504 619 6.099125 TCTCCCCTGTGTCAATTCGATAATAA 59.901 38.462 0.00 0.00 0.00 1.40
543 658 4.452733 AAGGAGCGTACGCCAGCC 62.453 66.667 34.88 30.49 43.17 4.85
616 735 4.832248 TGTACTAGGCATGTCAAGAAAGG 58.168 43.478 0.00 0.00 0.00 3.11
623 742 5.222079 TGAAAGTTGTACTAGGCATGTCA 57.778 39.130 0.00 0.00 0.00 3.58
651 770 2.371841 TGAAGAGCAAGGAAGGTAGCAA 59.628 45.455 0.00 0.00 0.00 3.91
652 771 1.977854 TGAAGAGCAAGGAAGGTAGCA 59.022 47.619 0.00 0.00 0.00 3.49
653 772 2.770164 TGAAGAGCAAGGAAGGTAGC 57.230 50.000 0.00 0.00 0.00 3.58
654 773 3.944015 CCATTGAAGAGCAAGGAAGGTAG 59.056 47.826 0.00 0.00 40.58 3.18
655 774 3.587061 TCCATTGAAGAGCAAGGAAGGTA 59.413 43.478 0.00 0.00 40.58 3.08
656 775 2.376518 TCCATTGAAGAGCAAGGAAGGT 59.623 45.455 0.00 0.00 40.58 3.50
657 776 3.077484 TCCATTGAAGAGCAAGGAAGG 57.923 47.619 0.00 0.00 40.58 3.46
678 797 3.352611 AAGCTCCCAGGTCAGGTATAT 57.647 47.619 0.00 0.00 0.00 0.86
679 798 2.868964 AAGCTCCCAGGTCAGGTATA 57.131 50.000 0.00 0.00 0.00 1.47
711 830 4.818534 TTCAGTAACTTGTACGACGAGT 57.181 40.909 0.00 0.00 44.44 4.18
712 831 6.541086 ACTATTCAGTAACTTGTACGACGAG 58.459 40.000 0.00 0.00 32.53 4.18
713 832 6.147656 TGACTATTCAGTAACTTGTACGACGA 59.852 38.462 0.00 0.00 34.21 4.20
714 833 6.309436 TGACTATTCAGTAACTTGTACGACG 58.691 40.000 0.00 0.00 34.21 5.12
715 834 7.722647 CTGACTATTCAGTAACTTGTACGAC 57.277 40.000 1.99 0.00 43.95 4.34
1081 1748 3.272574 TGATTTCAGCAGATGACCTCC 57.727 47.619 0.00 0.00 37.77 4.30
1086 1753 4.318332 ACGTCTTTGATTTCAGCAGATGA 58.682 39.130 13.80 0.00 35.62 2.92
1134 1801 2.479566 TGTTTGAGACTGATCCAGGC 57.520 50.000 0.00 0.00 40.37 4.85
1167 1834 3.823330 CCTCGGGGGAAGTCGACG 61.823 72.222 10.46 0.00 37.23 5.12
1207 1874 0.817654 TCATCGACGACCTCAGCATT 59.182 50.000 0.00 0.00 0.00 3.56
1212 1879 1.405463 CCATTCTCATCGACGACCTCA 59.595 52.381 0.00 0.00 0.00 3.86
1296 1963 1.345741 TCAGAGCTCTGGTTGTCCTTG 59.654 52.381 36.92 14.01 43.91 3.61
1300 1967 1.367659 GCATCAGAGCTCTGGTTGTC 58.632 55.000 36.92 25.08 43.91 3.18
1304 1971 2.176314 TTGCGCATCAGAGCTCTGGT 62.176 55.000 36.92 31.29 43.91 4.00
1312 1979 0.881118 GGAACCTTTTGCGCATCAGA 59.119 50.000 12.75 0.00 0.00 3.27
1327 1994 1.135112 CCCTTTAAGCATTGCGGGAAC 60.135 52.381 11.87 0.00 33.62 3.62
1332 1999 3.781079 TCATTCCCTTTAAGCATTGCG 57.219 42.857 2.38 0.00 0.00 4.85
1333 2000 4.099881 TCCATCATTCCCTTTAAGCATTGC 59.900 41.667 0.00 0.00 0.00 3.56
1334 2001 5.361857 ACTCCATCATTCCCTTTAAGCATTG 59.638 40.000 0.00 0.00 0.00 2.82
1345 2015 1.747355 CTTGCACACTCCATCATTCCC 59.253 52.381 0.00 0.00 0.00 3.97
1369 2039 1.405121 CCCGAAGTACTGGGTTAGTGC 60.405 57.143 9.70 0.00 40.65 4.40
1455 2125 0.034670 CTTCAGGGGCCTTCTCTTGG 60.035 60.000 0.84 0.00 0.00 3.61
1492 2162 3.749609 TCGATGGCATGAATATTGAGCAG 59.250 43.478 3.81 0.00 0.00 4.24
1529 2199 2.103042 GTGCAGCTAGGCTTGTCGG 61.103 63.158 0.00 0.00 36.40 4.79
1566 2236 8.340443 CCATACTCATCAATTGTGACATTGTAG 58.660 37.037 5.13 0.00 36.31 2.74
1600 2270 3.566523 CACCAGTGTAGTTCTTCGAGAC 58.433 50.000 0.00 0.00 0.00 3.36
1624 2294 3.376234 GTCTGATCATAGCAGCAAAGCAA 59.624 43.478 0.00 0.00 36.85 3.91
1657 2327 0.040067 GCGTTGAACCCTGCTTTGAG 60.040 55.000 0.00 0.00 0.00 3.02
1664 2334 2.742372 CCTCGGCGTTGAACCCTG 60.742 66.667 6.85 0.00 0.00 4.45
1690 2360 1.260561 CACGGTGTACTGCAAGAACAC 59.739 52.381 14.42 14.42 42.17 3.32
1713 2383 0.247460 CATCAGTCCAGTCGAGCCAA 59.753 55.000 0.00 0.00 0.00 4.52
1788 2458 2.341257 CAAGAGTGTTCATGAGTCCCG 58.659 52.381 0.00 0.00 0.00 5.14
1791 2461 3.188048 CCTTGCAAGAGTGTTCATGAGTC 59.812 47.826 28.05 0.00 0.00 3.36
1844 2517 5.906113 TTTAAACTCTGAAACAGTTGCCA 57.094 34.783 0.00 0.00 34.21 4.92
1845 2518 6.330278 AGTTTTAAACTCTGAAACAGTTGCC 58.670 36.000 4.30 0.00 37.02 4.52
1846 2519 9.170584 GATAGTTTTAAACTCTGAAACAGTTGC 57.829 33.333 14.03 0.00 41.77 4.17
1904 2579 7.664731 TGTGTATTTGAATACCCGTAAAAAGGA 59.335 33.333 10.47 0.00 40.37 3.36
1905 2580 7.818642 TGTGTATTTGAATACCCGTAAAAAGG 58.181 34.615 10.47 0.00 40.37 3.11
1906 2581 9.849166 ATTGTGTATTTGAATACCCGTAAAAAG 57.151 29.630 10.47 0.00 40.37 2.27
1907 2582 9.843334 GATTGTGTATTTGAATACCCGTAAAAA 57.157 29.630 10.47 0.00 40.37 1.94
1908 2583 9.233649 AGATTGTGTATTTGAATACCCGTAAAA 57.766 29.630 10.47 0.00 40.37 1.52
1937 2612 7.797215 AGTTCATAAACCAACCTACTAAGGCTC 60.797 40.741 0.00 0.00 40.37 4.70
1938 2613 6.012771 AGTTCATAAACCAACCTACTAAGGCT 60.013 38.462 0.00 0.00 40.37 4.58
1939 2614 6.178324 AGTTCATAAACCAACCTACTAAGGC 58.822 40.000 0.00 0.00 40.37 4.35
1944 2619 6.178324 GGCTTAGTTCATAAACCAACCTACT 58.822 40.000 0.00 0.00 35.92 2.57
1945 2620 5.941647 TGGCTTAGTTCATAAACCAACCTAC 59.058 40.000 0.00 0.00 36.81 3.18
1946 2621 6.129414 TGGCTTAGTTCATAAACCAACCTA 57.871 37.500 0.00 0.00 36.81 3.08
1947 2622 4.993028 TGGCTTAGTTCATAAACCAACCT 58.007 39.130 0.00 0.00 36.81 3.50
1948 2623 5.914898 ATGGCTTAGTTCATAAACCAACC 57.085 39.130 0.00 0.00 41.74 3.77
1949 2624 6.919721 TCAATGGCTTAGTTCATAAACCAAC 58.080 36.000 0.00 0.00 41.74 3.77
1950 2625 7.716799 ATCAATGGCTTAGTTCATAAACCAA 57.283 32.000 0.00 0.00 41.74 3.67
1951 2626 7.716799 AATCAATGGCTTAGTTCATAAACCA 57.283 32.000 0.00 0.00 42.43 3.67
1952 2627 9.516314 GTAAATCAATGGCTTAGTTCATAAACC 57.484 33.333 0.00 0.00 35.92 3.27
1962 2637 6.375455 ACTCAACCTGTAAATCAATGGCTTAG 59.625 38.462 0.00 0.00 0.00 2.18
1966 2641 6.318648 TGATACTCAACCTGTAAATCAATGGC 59.681 38.462 0.00 0.00 0.00 4.40
1973 2648 7.607991 CCTCAACTTGATACTCAACCTGTAAAT 59.392 37.037 0.00 0.00 32.21 1.40
1995 2670 3.604129 TTCCGCGCTGCATTCCTCA 62.604 57.895 5.56 0.00 0.00 3.86
2010 2685 1.611491 TCATTGTTGGCTCGGTTTTCC 59.389 47.619 0.00 0.00 0.00 3.13
2060 2735 4.069232 CTCCTCCACGCGGCAAGA 62.069 66.667 12.47 0.00 0.00 3.02
2109 2784 1.228894 AGAAGCACCGACTCCTCCA 60.229 57.895 0.00 0.00 0.00 3.86
2128 2803 0.106569 TCCATTACCTGGCCATGCAG 60.107 55.000 5.51 0.00 45.52 4.41
2191 2867 5.063880 AGCGTTTCCACTCAAAATAACTCT 58.936 37.500 0.00 0.00 0.00 3.24
2205 2881 5.597182 AGATAGGTAGTATTGAGCGTTTCCA 59.403 40.000 0.00 0.00 0.00 3.53
2212 2888 7.439655 CCAAGTTTCAGATAGGTAGTATTGAGC 59.560 40.741 0.00 0.00 0.00 4.26
2253 2929 3.499338 TGGTTGCAGACAGAATTGGAAT 58.501 40.909 0.00 0.00 0.00 3.01
2254 2930 2.942804 TGGTTGCAGACAGAATTGGAA 58.057 42.857 0.00 0.00 0.00 3.53
2290 2974 7.792374 TGAGCATGTAATTCAGGAATTAGTC 57.208 36.000 13.28 5.44 42.09 2.59
2349 3081 4.271049 GCTTTCTTTTCCTTTGGCAAGAAC 59.729 41.667 0.00 0.00 34.06 3.01
2350 3082 4.441792 GCTTTCTTTTCCTTTGGCAAGAA 58.558 39.130 0.00 0.00 33.16 2.52
2352 3084 3.133691 GGCTTTCTTTTCCTTTGGCAAG 58.866 45.455 0.00 0.00 0.00 4.01
2355 3087 4.039245 AGTTAGGCTTTCTTTTCCTTTGGC 59.961 41.667 0.00 0.00 0.00 4.52
2356 3088 5.791336 AGTTAGGCTTTCTTTTCCTTTGG 57.209 39.130 0.00 0.00 0.00 3.28
2358 3090 6.833933 TCAGAAGTTAGGCTTTCTTTTCCTTT 59.166 34.615 0.00 0.00 37.59 3.11
2359 3091 6.365520 TCAGAAGTTAGGCTTTCTTTTCCTT 58.634 36.000 0.00 0.00 37.59 3.36
2360 3092 5.941788 TCAGAAGTTAGGCTTTCTTTTCCT 58.058 37.500 0.00 0.00 37.59 3.36
2362 3094 5.765677 ACCTCAGAAGTTAGGCTTTCTTTTC 59.234 40.000 0.00 0.00 37.59 2.29
2364 3096 5.311844 ACCTCAGAAGTTAGGCTTTCTTT 57.688 39.130 0.00 0.00 37.59 2.52
2365 3097 4.984146 ACCTCAGAAGTTAGGCTTTCTT 57.016 40.909 0.00 0.00 37.59 2.52
2366 3098 6.435292 TTTACCTCAGAAGTTAGGCTTTCT 57.565 37.500 0.00 0.00 37.59 2.52
2367 3099 7.413109 CGAATTTACCTCAGAAGTTAGGCTTTC 60.413 40.741 0.00 0.00 37.59 2.62
2368 3100 6.371825 CGAATTTACCTCAGAAGTTAGGCTTT 59.628 38.462 0.00 0.00 37.59 3.51
2388 3120 3.197766 TCCATCCTGTAGCAAGTCGAATT 59.802 43.478 0.00 0.00 0.00 2.17
2392 3124 1.799181 CGTCCATCCTGTAGCAAGTCG 60.799 57.143 0.00 0.00 0.00 4.18
2419 3151 3.370978 CGTAAGTTGGAAGCGATTCACAT 59.629 43.478 16.24 1.36 0.00 3.21
2470 3202 2.415168 CGACATGCCGACAATGTAGTTT 59.585 45.455 0.00 0.00 0.00 2.66
2479 3211 2.027073 GCAACTCGACATGCCGACA 61.027 57.895 0.00 0.00 36.56 4.35
2482 3214 1.421410 GGTAGCAACTCGACATGCCG 61.421 60.000 12.71 0.00 43.57 5.69
2493 3225 3.478540 CCTGGCTTAGGGTAGCAAC 57.521 57.895 0.00 0.00 43.33 4.17
2572 3304 3.695606 ATGACGCCGGTGTGCTCT 61.696 61.111 28.44 0.00 0.00 4.09
2573 3305 3.490759 CATGACGCCGGTGTGCTC 61.491 66.667 28.44 12.21 0.00 4.26
2659 3391 2.478335 GAAACTCACATGGGGCCGGA 62.478 60.000 5.05 0.00 0.00 5.14
2662 3394 2.267045 GTGAAACTCACATGGGGCC 58.733 57.895 0.00 0.00 46.22 5.80
2681 3413 5.910723 GGCTGCAAAAATGAGTGAAAAATTG 59.089 36.000 0.50 0.00 0.00 2.32
2684 3416 3.876320 GGGCTGCAAAAATGAGTGAAAAA 59.124 39.130 0.50 0.00 0.00 1.94
2685 3417 3.118482 TGGGCTGCAAAAATGAGTGAAAA 60.118 39.130 0.50 0.00 0.00 2.29
2694 3428 4.520111 GGAAAGAAAATGGGCTGCAAAAAT 59.480 37.500 0.50 0.00 0.00 1.82
2699 3433 0.602562 CGGAAAGAAAATGGGCTGCA 59.397 50.000 0.50 0.00 0.00 4.41
2700 3434 0.887933 TCGGAAAGAAAATGGGCTGC 59.112 50.000 0.00 0.00 0.00 5.25
2701 3435 2.095059 CACTCGGAAAGAAAATGGGCTG 60.095 50.000 0.00 0.00 0.00 4.85
2702 3436 2.162681 CACTCGGAAAGAAAATGGGCT 58.837 47.619 0.00 0.00 0.00 5.19
2703 3437 2.159382 TCACTCGGAAAGAAAATGGGC 58.841 47.619 0.00 0.00 0.00 5.36
2705 3439 5.402398 GGAATTCACTCGGAAAGAAAATGG 58.598 41.667 7.93 0.00 39.39 3.16
2706 3440 5.088739 CGGAATTCACTCGGAAAGAAAATG 58.911 41.667 7.93 0.00 39.39 2.32
2707 3441 5.001232 TCGGAATTCACTCGGAAAGAAAAT 58.999 37.500 7.93 0.00 39.39 1.82
2708 3442 4.382291 TCGGAATTCACTCGGAAAGAAAA 58.618 39.130 7.93 0.00 39.39 2.29
2710 3444 3.671008 TCGGAATTCACTCGGAAAGAA 57.329 42.857 7.93 0.00 39.39 2.52
2712 3446 4.742438 TTTTCGGAATTCACTCGGAAAG 57.258 40.909 7.93 0.00 42.23 2.62
2717 3451 3.125146 TCTGCATTTTCGGAATTCACTCG 59.875 43.478 7.93 1.92 0.00 4.18
2718 3452 4.685169 TCTGCATTTTCGGAATTCACTC 57.315 40.909 7.93 0.00 0.00 3.51
2721 3455 4.218200 ACACATCTGCATTTTCGGAATTCA 59.782 37.500 7.93 0.00 0.00 2.57
2722 3456 4.737054 ACACATCTGCATTTTCGGAATTC 58.263 39.130 0.00 0.00 0.00 2.17
2723 3457 4.789012 ACACATCTGCATTTTCGGAATT 57.211 36.364 0.00 0.00 0.00 2.17
2726 3460 4.323417 AGTTACACATCTGCATTTTCGGA 58.677 39.130 0.00 0.00 0.00 4.55
2728 3462 6.831769 ACTTAGTTACACATCTGCATTTTCG 58.168 36.000 0.00 0.00 0.00 3.46
2729 3463 8.507249 AGAACTTAGTTACACATCTGCATTTTC 58.493 33.333 0.00 0.00 0.00 2.29
2733 3470 6.936900 ACAAGAACTTAGTTACACATCTGCAT 59.063 34.615 0.00 0.00 0.00 3.96
2738 3475 8.819643 AGAGAACAAGAACTTAGTTACACATC 57.180 34.615 0.00 0.00 0.00 3.06
2769 3508 1.578897 TAGGCACCCTACTCATGCAA 58.421 50.000 0.00 0.00 41.27 4.08
2855 3608 3.190118 GTGATTGGTTCAGCTTCTTCTGG 59.810 47.826 0.00 0.00 34.17 3.86
2857 3610 3.416156 GGTGATTGGTTCAGCTTCTTCT 58.584 45.455 0.00 0.00 46.97 2.85
2870 3623 3.301794 TGATTGATCCAGGGTGATTGG 57.698 47.619 0.00 0.00 37.04 3.16
2879 3632 9.860898 TTATAACTATGACGATGATTGATCCAG 57.139 33.333 0.00 0.00 0.00 3.86
2888 3641 9.025041 ACATCCATCTTATAACTATGACGATGA 57.975 33.333 17.87 5.89 32.37 2.92
2889 3642 9.080915 CACATCCATCTTATAACTATGACGATG 57.919 37.037 13.75 13.75 33.15 3.84
2905 3658 9.466497 AATAGTATGACAAAAACACATCCATCT 57.534 29.630 0.00 0.00 0.00 2.90
2959 3715 3.425359 CGAAATGACATTGCTCACTGACC 60.425 47.826 0.34 0.00 0.00 4.02
3202 4074 3.845259 GGAGTATGGGGCGCGACA 61.845 66.667 17.00 7.80 0.00 4.35
3213 4085 3.017323 CGTACGACGCGGGAGTAT 58.983 61.111 10.44 0.00 33.65 2.12
3235 4110 1.957186 GCACTACCGAACCGCACAA 60.957 57.895 0.00 0.00 0.00 3.33
3236 4111 2.356553 GCACTACCGAACCGCACA 60.357 61.111 0.00 0.00 0.00 4.57
3357 4239 3.755628 GACTACAGACGCCGCCCA 61.756 66.667 0.00 0.00 0.00 5.36
3368 4250 4.367023 GGCGCGTGGGTGACTACA 62.367 66.667 8.43 0.00 42.92 2.74
3401 4299 2.290896 GGGATGGGATGTCAGTTTCACA 60.291 50.000 0.00 0.00 0.00 3.58
3409 4307 2.613576 TAGGCGGGGATGGGATGTCA 62.614 60.000 0.00 0.00 0.00 3.58
3414 4312 2.555021 TTTCCTAGGCGGGGATGGGA 62.555 60.000 2.96 0.00 32.41 4.37
3539 4437 3.419759 GCGTTTCACCGGCGACAT 61.420 61.111 9.30 0.00 0.00 3.06
3661 4563 6.079712 ACAAAAAGAGCCATCCTAACCTAT 57.920 37.500 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.