Multiple sequence alignment - TraesCS7B01G162100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G162100 chr7B 100.000 3250 0 0 1 3250 222312349 222315598 0.000000e+00 6002.0
1 TraesCS7B01G162100 chr7B 94.371 533 25 5 2720 3250 51061296 51061825 0.000000e+00 813.0
2 TraesCS7B01G162100 chr7B 79.512 205 25 10 19 219 649219279 649219088 2.630000e-26 130.0
3 TraesCS7B01G162100 chr7D 92.210 1258 37 24 264 1489 246073832 246075060 0.000000e+00 1724.0
4 TraesCS7B01G162100 chr7D 93.844 731 33 2 1539 2263 246075346 246076070 0.000000e+00 1090.0
5 TraesCS7B01G162100 chr7D 83.333 258 27 5 10 263 58135988 58135743 1.170000e-54 224.0
6 TraesCS7B01G162100 chr7D 79.070 215 30 8 9 219 581402837 581402634 2.030000e-27 134.0
7 TraesCS7B01G162100 chr7D 79.426 209 28 9 15 219 581493224 581493027 2.030000e-27 134.0
8 TraesCS7B01G162100 chr7A 91.193 1090 30 16 440 1495 262473220 262474277 0.000000e+00 1421.0
9 TraesCS7B01G162100 chr7A 93.742 767 35 7 1506 2263 262474350 262475112 0.000000e+00 1138.0
10 TraesCS7B01G162100 chr7A 93.154 409 21 4 2279 2682 262475097 262475503 7.760000e-166 593.0
11 TraesCS7B01G162100 chr7A 80.695 259 32 9 11 262 510900861 510900614 5.540000e-43 185.0
12 TraesCS7B01G162100 chr1B 95.497 533 22 2 2720 3250 585830248 585829716 0.000000e+00 850.0
13 TraesCS7B01G162100 chr1B 94.569 534 24 5 2720 3250 279905743 279906274 0.000000e+00 821.0
14 TraesCS7B01G162100 chr1B 83.398 259 27 7 9 263 22398823 22398577 3.260000e-55 226.0
15 TraesCS7B01G162100 chr1B 82.625 259 29 7 9 263 22518768 22518522 7.060000e-52 215.0
16 TraesCS7B01G162100 chr1B 82.239 259 30 9 9 263 22606929 22606683 3.290000e-50 209.0
17 TraesCS7B01G162100 chr5B 94.569 534 24 5 2720 3250 700597552 700598083 0.000000e+00 821.0
18 TraesCS7B01G162100 chr5B 87.209 172 20 2 1743 1913 497504692 497504862 9.200000e-46 195.0
19 TraesCS7B01G162100 chr5B 80.695 259 35 7 9 263 544944958 544944711 1.540000e-43 187.0
20 TraesCS7B01G162100 chr5B 81.977 172 27 4 1744 1913 417886227 417886396 3.380000e-30 143.0
21 TraesCS7B01G162100 chr5B 91.667 48 1 2 2672 2716 620762806 620762759 2.710000e-06 63.9
22 TraesCS7B01G162100 chr5B 91.667 48 1 2 2672 2716 620764030 620763983 2.710000e-06 63.9
23 TraesCS7B01G162100 chr5B 91.667 48 1 2 2672 2716 620765253 620765206 2.710000e-06 63.9
24 TraesCS7B01G162100 chr3B 94.382 534 25 5 2720 3250 426087120 426086589 0.000000e+00 815.0
25 TraesCS7B01G162100 chr3B 93.996 533 29 3 2720 3250 428201274 428200743 0.000000e+00 804.0
26 TraesCS7B01G162100 chr3B 83.398 259 28 6 9 263 821758484 821758731 3.260000e-55 226.0
27 TraesCS7B01G162100 chrUn 94.206 535 23 7 2720 3250 31720060 31720590 0.000000e+00 809.0
28 TraesCS7B01G162100 chr1A 93.996 533 28 4 2720 3250 441834735 441834205 0.000000e+00 804.0
29 TraesCS7B01G162100 chr1A 93.985 532 29 3 2720 3250 23067050 23066521 0.000000e+00 802.0
30 TraesCS7B01G162100 chr1A 79.151 259 35 12 9 263 8736420 8736663 9.330000e-36 161.0
31 TraesCS7B01G162100 chr1A 81.503 173 28 4 1743 1913 547908055 547907885 4.370000e-29 139.0
32 TraesCS7B01G162100 chr1A 81.143 175 28 5 1743 1914 547887106 547887278 5.660000e-28 135.0
33 TraesCS7B01G162100 chr1A 80.347 173 30 4 1743 1913 547864270 547864440 9.460000e-26 128.0
34 TraesCS7B01G162100 chr5D 83.398 259 28 6 9 263 115972933 115972686 3.260000e-55 226.0
35 TraesCS7B01G162100 chr5D 81.890 254 28 12 14 263 388874556 388874317 7.110000e-47 198.0
36 TraesCS7B01G162100 chr5D 87.209 172 20 2 1743 1913 412960787 412960957 9.200000e-46 195.0
37 TraesCS7B01G162100 chr5A 88.372 172 18 2 1743 1913 525026121 525026291 4.250000e-49 206.0
38 TraesCS7B01G162100 chr5A 80.928 194 32 5 1744 1935 454732998 454733188 7.260000e-32 148.0
39 TraesCS7B01G162100 chr2B 82.787 244 26 8 25 263 226520816 226520584 1.530000e-48 204.0
40 TraesCS7B01G162100 chr2B 83.626 171 28 0 1743 1913 95796563 95796733 9.330000e-36 161.0
41 TraesCS7B01G162100 chr2B 83.582 67 5 6 2656 2716 133012206 133012272 1.260000e-04 58.4
42 TraesCS7B01G162100 chr2B 90.698 43 2 2 2678 2719 249107297 249107256 4.530000e-04 56.5
43 TraesCS7B01G162100 chr3D 85.714 175 23 2 1740 1913 486050777 486050604 1.990000e-42 183.0
44 TraesCS7B01G162100 chr3A 85.143 175 24 2 1740 1913 629228104 629227931 9.270000e-41 178.0
45 TraesCS7B01G162100 chr3A 86.441 59 3 4 2660 2716 607110193 607110138 3.500000e-05 60.2
46 TraesCS7B01G162100 chr2A 84.795 171 26 0 1743 1913 61488449 61488619 4.310000e-39 172.0
47 TraesCS7B01G162100 chr2D 84.211 171 27 0 1743 1913 61021904 61022074 2.010000e-37 167.0
48 TraesCS7B01G162100 chr2D 88.172 93 6 1 161 253 43096638 43096725 4.430000e-19 106.0
49 TraesCS7B01G162100 chr6B 83.815 173 19 8 1750 1918 615605784 615605951 4.340000e-34 156.0
50 TraesCS7B01G162100 chr6A 83.237 173 20 8 1750 1918 555089338 555089505 2.020000e-32 150.0
51 TraesCS7B01G162100 chr6A 77.500 200 40 5 1743 1940 535403364 535403168 7.370000e-22 115.0
52 TraesCS7B01G162100 chr4B 82.143 168 29 1 1756 1923 585822533 585822367 3.380000e-30 143.0
53 TraesCS7B01G162100 chr4B 78.818 203 39 4 1713 1913 585964004 585963804 2.030000e-27 134.0
54 TraesCS7B01G162100 chr4B 86.207 58 2 4 2662 2716 473531743 473531797 1.260000e-04 58.4
55 TraesCS7B01G162100 chr4D 92.857 98 6 1 381 478 74095809 74095905 1.220000e-29 141.0
56 TraesCS7B01G162100 chr4D 81.548 168 30 1 1756 1923 467636284 467636118 1.570000e-28 137.0
57 TraesCS7B01G162100 chr1D 80.571 175 29 5 1743 1914 453199998 453200170 2.630000e-26 130.0
58 TraesCS7B01G162100 chr1D 80.347 173 30 4 1743 1913 453182069 453182239 9.460000e-26 128.0
59 TraesCS7B01G162100 chr1D 80.233 172 30 4 1744 1913 453135034 453135203 3.400000e-25 126.0
60 TraesCS7B01G162100 chr1D 87.500 56 3 4 2665 2716 4309194 4309139 9.740000e-06 62.1
61 TraesCS7B01G162100 chr1D 87.500 56 3 4 2665 2716 7179539 7179594 9.740000e-06 62.1
62 TraesCS7B01G162100 chr6D 80.556 144 24 3 1743 1884 388951397 388951256 1.230000e-19 108.0
63 TraesCS7B01G162100 chr6D 91.489 47 4 0 1825 1871 85100137 85100183 7.530000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G162100 chr7B 222312349 222315598 3249 False 6002.000000 6002 100.000000 1 3250 1 chr7B.!!$F2 3249
1 TraesCS7B01G162100 chr7B 51061296 51061825 529 False 813.000000 813 94.371000 2720 3250 1 chr7B.!!$F1 530
2 TraesCS7B01G162100 chr7D 246073832 246076070 2238 False 1407.000000 1724 93.027000 264 2263 2 chr7D.!!$F1 1999
3 TraesCS7B01G162100 chr7A 262473220 262475503 2283 False 1050.666667 1421 92.696333 440 2682 3 chr7A.!!$F1 2242
4 TraesCS7B01G162100 chr1B 585829716 585830248 532 True 850.000000 850 95.497000 2720 3250 1 chr1B.!!$R4 530
5 TraesCS7B01G162100 chr1B 279905743 279906274 531 False 821.000000 821 94.569000 2720 3250 1 chr1B.!!$F1 530
6 TraesCS7B01G162100 chr5B 700597552 700598083 531 False 821.000000 821 94.569000 2720 3250 1 chr5B.!!$F3 530
7 TraesCS7B01G162100 chr3B 426086589 426087120 531 True 815.000000 815 94.382000 2720 3250 1 chr3B.!!$R1 530
8 TraesCS7B01G162100 chr3B 428200743 428201274 531 True 804.000000 804 93.996000 2720 3250 1 chr3B.!!$R2 530
9 TraesCS7B01G162100 chrUn 31720060 31720590 530 False 809.000000 809 94.206000 2720 3250 1 chrUn.!!$F1 530
10 TraesCS7B01G162100 chr1A 441834205 441834735 530 True 804.000000 804 93.996000 2720 3250 1 chr1A.!!$R2 530
11 TraesCS7B01G162100 chr1A 23066521 23067050 529 True 802.000000 802 93.985000 2720 3250 1 chr1A.!!$R1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.029035 CGGACGAGGATAGAACGTGG 59.971 60.0 0.00 0.00 40.29 4.94 F
287 288 0.042708 CGTGTAGCATTGCTCGCATC 60.043 55.0 15.81 9.24 40.44 3.91 F
1037 1075 0.244721 CACGTCATCAGCTCCACTCA 59.755 55.0 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1331 1388 0.040067 CAGTTGGCGAGTTCCAAAGC 60.040 55.000 0.0 0.0 46.63 3.51 R
1821 2115 2.112297 GGTGTCGAAGGTGCCCAA 59.888 61.111 0.0 0.0 0.00 4.12 R
2711 3016 0.323629 CGCCAAGGAGGGTAGTTTGA 59.676 55.000 0.0 0.0 38.09 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.344458 CATATGCTCTCCGACGATGC 58.656 55.000 0.00 0.00 0.00 3.91
20 21 1.067985 CATATGCTCTCCGACGATGCT 60.068 52.381 0.00 0.00 0.00 3.79
21 22 1.892209 TATGCTCTCCGACGATGCTA 58.108 50.000 0.00 0.00 0.00 3.49
22 23 0.595588 ATGCTCTCCGACGATGCTAG 59.404 55.000 0.00 0.00 0.00 3.42
23 24 0.463833 TGCTCTCCGACGATGCTAGA 60.464 55.000 0.00 0.00 0.00 2.43
24 25 0.040781 GCTCTCCGACGATGCTAGAC 60.041 60.000 0.00 0.00 0.00 2.59
25 26 0.233590 CTCTCCGACGATGCTAGACG 59.766 60.000 0.00 0.00 0.00 4.18
26 27 1.369448 CTCCGACGATGCTAGACGC 60.369 63.158 0.00 0.00 39.77 5.19
35 36 2.414750 TGCTAGACGCATCATCGGA 58.585 52.632 0.00 0.00 45.47 4.55
36 37 0.030773 TGCTAGACGCATCATCGGAC 59.969 55.000 0.00 0.00 45.47 4.79
37 38 0.999228 GCTAGACGCATCATCGGACG 60.999 60.000 0.00 0.00 38.92 4.79
38 39 0.586802 CTAGACGCATCATCGGACGA 59.413 55.000 0.00 0.00 0.00 4.20
39 40 0.586802 TAGACGCATCATCGGACGAG 59.413 55.000 0.00 0.00 0.00 4.18
40 41 1.658717 GACGCATCATCGGACGAGG 60.659 63.158 0.00 0.00 0.00 4.63
41 42 2.060004 GACGCATCATCGGACGAGGA 62.060 60.000 11.53 11.53 39.31 3.71
42 43 1.287191 CGCATCATCGGACGAGGAT 59.713 57.895 15.08 15.08 45.01 3.24
43 44 0.521735 CGCATCATCGGACGAGGATA 59.478 55.000 19.44 0.00 42.72 2.59
44 45 1.466529 CGCATCATCGGACGAGGATAG 60.467 57.143 19.44 14.85 42.72 2.08
45 46 1.813178 GCATCATCGGACGAGGATAGA 59.187 52.381 19.44 4.29 42.72 1.98
46 47 2.229062 GCATCATCGGACGAGGATAGAA 59.771 50.000 19.44 0.00 42.72 2.10
47 48 3.827625 CATCATCGGACGAGGATAGAAC 58.172 50.000 19.44 0.00 42.72 3.01
48 49 1.871676 TCATCGGACGAGGATAGAACG 59.128 52.381 4.86 0.00 29.49 3.95
49 50 1.602851 CATCGGACGAGGATAGAACGT 59.397 52.381 0.00 0.00 42.84 3.99
50 51 1.012086 TCGGACGAGGATAGAACGTG 58.988 55.000 0.00 0.00 40.29 4.49
51 52 0.029035 CGGACGAGGATAGAACGTGG 59.971 60.000 0.00 0.00 40.29 4.94
52 53 0.384669 GGACGAGGATAGAACGTGGG 59.615 60.000 0.00 0.00 40.29 4.61
53 54 1.386533 GACGAGGATAGAACGTGGGA 58.613 55.000 0.00 0.00 40.29 4.37
54 55 1.334243 GACGAGGATAGAACGTGGGAG 59.666 57.143 0.00 0.00 40.29 4.30
55 56 1.064906 ACGAGGATAGAACGTGGGAGA 60.065 52.381 0.00 0.00 38.79 3.71
56 57 1.334243 CGAGGATAGAACGTGGGAGAC 59.666 57.143 0.00 0.00 0.00 3.36
57 58 2.376109 GAGGATAGAACGTGGGAGACA 58.624 52.381 0.00 0.00 0.00 3.41
58 59 2.959707 GAGGATAGAACGTGGGAGACAT 59.040 50.000 0.00 0.00 0.00 3.06
59 60 2.959707 AGGATAGAACGTGGGAGACATC 59.040 50.000 0.00 0.00 0.00 3.06
60 61 2.693591 GGATAGAACGTGGGAGACATCA 59.306 50.000 0.00 0.00 0.00 3.07
61 62 3.322254 GGATAGAACGTGGGAGACATCAT 59.678 47.826 0.00 0.00 0.00 2.45
62 63 4.202264 GGATAGAACGTGGGAGACATCATT 60.202 45.833 0.00 0.00 0.00 2.57
63 64 3.252974 AGAACGTGGGAGACATCATTC 57.747 47.619 0.00 0.00 0.00 2.67
64 65 2.093447 AGAACGTGGGAGACATCATTCC 60.093 50.000 0.00 0.00 0.00 3.01
65 66 1.573108 ACGTGGGAGACATCATTCCT 58.427 50.000 0.00 0.00 33.85 3.36
66 67 2.747177 ACGTGGGAGACATCATTCCTA 58.253 47.619 0.00 0.00 33.85 2.94
67 68 2.431057 ACGTGGGAGACATCATTCCTAC 59.569 50.000 0.00 0.00 40.43 3.18
68 69 2.695666 CGTGGGAGACATCATTCCTACT 59.304 50.000 5.66 0.00 41.33 2.57
69 70 3.889538 CGTGGGAGACATCATTCCTACTA 59.110 47.826 5.66 0.00 41.33 1.82
70 71 4.341235 CGTGGGAGACATCATTCCTACTAA 59.659 45.833 5.66 0.00 41.33 2.24
71 72 5.602628 GTGGGAGACATCATTCCTACTAAC 58.397 45.833 0.44 0.00 40.60 2.34
72 73 4.341235 TGGGAGACATCATTCCTACTAACG 59.659 45.833 0.00 0.00 33.85 3.18
73 74 4.583489 GGGAGACATCATTCCTACTAACGA 59.417 45.833 0.00 0.00 33.85 3.85
74 75 5.068723 GGGAGACATCATTCCTACTAACGAA 59.931 44.000 0.00 0.00 33.85 3.85
75 76 5.978322 GGAGACATCATTCCTACTAACGAAC 59.022 44.000 0.00 0.00 0.00 3.95
76 77 6.405508 GGAGACATCATTCCTACTAACGAACA 60.406 42.308 0.00 0.00 0.00 3.18
77 78 7.113658 AGACATCATTCCTACTAACGAACAT 57.886 36.000 0.00 0.00 0.00 2.71
78 79 7.203910 AGACATCATTCCTACTAACGAACATC 58.796 38.462 0.00 0.00 0.00 3.06
79 80 5.977725 ACATCATTCCTACTAACGAACATCG 59.022 40.000 0.00 0.00 46.93 3.84
80 81 4.357142 TCATTCCTACTAACGAACATCGC 58.643 43.478 0.00 0.00 45.12 4.58
81 82 2.857592 TCCTACTAACGAACATCGCC 57.142 50.000 0.00 0.00 45.12 5.54
82 83 1.064505 TCCTACTAACGAACATCGCCG 59.935 52.381 0.00 0.00 45.12 6.46
83 84 0.844503 CTACTAACGAACATCGCCGC 59.155 55.000 0.00 0.00 45.12 6.53
84 85 0.526096 TACTAACGAACATCGCCGCC 60.526 55.000 0.00 0.00 45.12 6.13
85 86 2.856346 CTAACGAACATCGCCGCCG 61.856 63.158 0.00 0.00 45.12 6.46
89 90 4.811761 GAACATCGCCGCCGCAAC 62.812 66.667 0.00 0.00 34.03 4.17
97 98 4.659874 CCGCCGCAACACAACGTC 62.660 66.667 0.00 0.00 0.00 4.34
98 99 3.931130 CGCCGCAACACAACGTCA 61.931 61.111 0.00 0.00 0.00 4.35
99 100 2.405594 GCCGCAACACAACGTCAA 59.594 55.556 0.00 0.00 0.00 3.18
100 101 1.008995 GCCGCAACACAACGTCAAT 60.009 52.632 0.00 0.00 0.00 2.57
101 102 0.996727 GCCGCAACACAACGTCAATC 60.997 55.000 0.00 0.00 0.00 2.67
102 103 0.306228 CCGCAACACAACGTCAATCA 59.694 50.000 0.00 0.00 0.00 2.57
103 104 1.268285 CCGCAACACAACGTCAATCAA 60.268 47.619 0.00 0.00 0.00 2.57
104 105 2.036217 CGCAACACAACGTCAATCAAG 58.964 47.619 0.00 0.00 0.00 3.02
105 106 2.286125 CGCAACACAACGTCAATCAAGA 60.286 45.455 0.00 0.00 0.00 3.02
106 107 3.606846 CGCAACACAACGTCAATCAAGAT 60.607 43.478 0.00 0.00 0.00 2.40
107 108 3.665409 GCAACACAACGTCAATCAAGATG 59.335 43.478 0.00 0.00 0.00 2.90
108 109 3.542712 ACACAACGTCAATCAAGATGC 57.457 42.857 0.00 0.00 0.00 3.91
109 110 3.141398 ACACAACGTCAATCAAGATGCT 58.859 40.909 0.00 0.00 0.00 3.79
110 111 3.058708 ACACAACGTCAATCAAGATGCTG 60.059 43.478 0.00 0.00 0.00 4.41
111 112 3.187022 CACAACGTCAATCAAGATGCTGA 59.813 43.478 0.00 0.00 0.00 4.26
112 113 3.187227 ACAACGTCAATCAAGATGCTGAC 59.813 43.478 0.00 5.28 35.82 3.51
113 114 3.325293 ACGTCAATCAAGATGCTGACT 57.675 42.857 11.16 0.22 36.80 3.41
114 115 4.456280 ACGTCAATCAAGATGCTGACTA 57.544 40.909 11.16 0.00 36.80 2.59
115 116 4.177026 ACGTCAATCAAGATGCTGACTAC 58.823 43.478 11.16 0.00 36.80 2.73
116 117 4.176271 CGTCAATCAAGATGCTGACTACA 58.824 43.478 11.16 0.00 36.80 2.74
117 118 4.627035 CGTCAATCAAGATGCTGACTACAA 59.373 41.667 11.16 0.00 36.80 2.41
118 119 5.120674 CGTCAATCAAGATGCTGACTACAAA 59.879 40.000 11.16 0.00 36.80 2.83
119 120 6.183360 CGTCAATCAAGATGCTGACTACAAAT 60.183 38.462 11.16 0.00 36.80 2.32
120 121 7.010460 CGTCAATCAAGATGCTGACTACAAATA 59.990 37.037 11.16 0.00 36.80 1.40
121 122 8.119226 GTCAATCAAGATGCTGACTACAAATAC 58.881 37.037 7.35 0.00 36.18 1.89
122 123 6.834959 ATCAAGATGCTGACTACAAATACG 57.165 37.500 0.00 0.00 0.00 3.06
123 124 5.961272 TCAAGATGCTGACTACAAATACGA 58.039 37.500 0.00 0.00 0.00 3.43
124 125 6.036470 TCAAGATGCTGACTACAAATACGAG 58.964 40.000 0.00 0.00 0.00 4.18
125 126 5.836821 AGATGCTGACTACAAATACGAGA 57.163 39.130 0.00 0.00 0.00 4.04
126 127 6.208988 AGATGCTGACTACAAATACGAGAA 57.791 37.500 0.00 0.00 0.00 2.87
127 128 6.037098 AGATGCTGACTACAAATACGAGAAC 58.963 40.000 0.00 0.00 0.00 3.01
128 129 4.163552 TGCTGACTACAAATACGAGAACG 58.836 43.478 0.00 0.00 45.75 3.95
129 130 3.546670 GCTGACTACAAATACGAGAACGG 59.453 47.826 0.00 0.00 44.46 4.44
130 131 4.100707 TGACTACAAATACGAGAACGGG 57.899 45.455 0.00 0.00 44.46 5.28
131 132 3.119388 TGACTACAAATACGAGAACGGGG 60.119 47.826 0.00 0.00 44.46 5.73
132 133 2.827921 ACTACAAATACGAGAACGGGGT 59.172 45.455 0.00 0.00 44.46 4.95
133 134 2.375173 ACAAATACGAGAACGGGGTC 57.625 50.000 0.00 0.00 44.46 4.46
134 135 1.066645 ACAAATACGAGAACGGGGTCC 60.067 52.381 0.00 0.00 44.46 4.46
135 136 0.538584 AAATACGAGAACGGGGTCCC 59.461 55.000 0.00 0.00 44.46 4.46
136 137 0.325016 AATACGAGAACGGGGTCCCT 60.325 55.000 8.15 0.00 44.46 4.20
137 138 0.754587 ATACGAGAACGGGGTCCCTC 60.755 60.000 8.15 0.00 44.46 4.30
138 139 2.843912 TACGAGAACGGGGTCCCTCC 62.844 65.000 8.15 0.00 44.46 4.30
175 176 4.268720 GAGAGATCCTCCGCACCT 57.731 61.111 0.00 0.00 35.87 4.00
176 177 2.037871 GAGAGATCCTCCGCACCTC 58.962 63.158 0.00 0.00 35.87 3.85
177 178 1.456705 AGAGATCCTCCGCACCTCC 60.457 63.158 0.00 0.00 0.00 4.30
178 179 1.758514 GAGATCCTCCGCACCTCCA 60.759 63.158 0.00 0.00 0.00 3.86
179 180 1.074926 AGATCCTCCGCACCTCCAT 60.075 57.895 0.00 0.00 0.00 3.41
180 181 1.070445 GATCCTCCGCACCTCCATG 59.930 63.158 0.00 0.00 0.00 3.66
181 182 2.388890 GATCCTCCGCACCTCCATGG 62.389 65.000 4.97 4.97 42.93 3.66
182 183 4.864334 CCTCCGCACCTCCATGGC 62.864 72.222 6.96 0.00 40.22 4.40
183 184 4.864334 CTCCGCACCTCCATGGCC 62.864 72.222 6.96 0.00 40.22 5.36
185 186 4.431131 CCGCACCTCCATGGCCTT 62.431 66.667 6.96 0.00 40.22 4.35
186 187 3.136123 CGCACCTCCATGGCCTTG 61.136 66.667 6.96 11.68 40.22 3.61
187 188 3.455469 GCACCTCCATGGCCTTGC 61.455 66.667 13.15 11.07 40.22 4.01
206 207 2.175878 CCTAAAGGCCATCGGAGATG 57.824 55.000 5.01 3.21 45.12 2.90
207 208 1.271054 CCTAAAGGCCATCGGAGATGG 60.271 57.143 21.26 21.26 45.12 3.51
208 209 0.764890 TAAAGGCCATCGGAGATGGG 59.235 55.000 25.10 11.14 45.12 4.00
209 210 0.988145 AAAGGCCATCGGAGATGGGA 60.988 55.000 25.10 0.00 45.12 4.37
210 211 1.700042 AAGGCCATCGGAGATGGGAC 61.700 60.000 25.10 12.75 45.12 4.46
211 212 2.029666 GCCATCGGAGATGGGACG 59.970 66.667 25.10 5.65 45.12 4.79
212 213 2.737180 CCATCGGAGATGGGACGG 59.263 66.667 18.63 0.00 45.12 4.79
213 214 1.832608 CCATCGGAGATGGGACGGA 60.833 63.158 18.63 0.00 45.12 4.69
214 215 1.364171 CATCGGAGATGGGACGGAC 59.636 63.158 2.29 0.00 45.12 4.79
215 216 1.833049 ATCGGAGATGGGACGGACC 60.833 63.158 0.00 0.00 45.12 4.46
216 217 3.900892 CGGAGATGGGACGGACCG 61.901 72.222 13.61 13.61 40.11 4.79
217 218 3.537874 GGAGATGGGACGGACCGG 61.538 72.222 20.00 0.00 40.11 5.28
218 219 4.222847 GAGATGGGACGGACCGGC 62.223 72.222 20.00 16.70 40.11 6.13
240 241 4.415150 ACGCCGACGGGAGGAGTA 62.415 66.667 17.22 0.00 46.04 2.59
241 242 3.584052 CGCCGACGGGAGGAGTAG 61.584 72.222 17.22 0.00 34.06 2.57
242 243 2.124403 GCCGACGGGAGGAGTAGA 60.124 66.667 17.22 0.00 34.06 2.59
243 244 2.188161 GCCGACGGGAGGAGTAGAG 61.188 68.421 17.22 0.00 34.06 2.43
244 245 2.188161 CCGACGGGAGGAGTAGAGC 61.188 68.421 5.81 0.00 34.06 4.09
245 246 1.153127 CGACGGGAGGAGTAGAGCT 60.153 63.158 0.00 0.00 0.00 4.09
246 247 0.748729 CGACGGGAGGAGTAGAGCTT 60.749 60.000 0.00 0.00 0.00 3.74
247 248 1.476477 GACGGGAGGAGTAGAGCTTT 58.524 55.000 0.00 0.00 0.00 3.51
248 249 1.826096 GACGGGAGGAGTAGAGCTTTT 59.174 52.381 0.00 0.00 0.00 2.27
249 250 1.826096 ACGGGAGGAGTAGAGCTTTTC 59.174 52.381 0.00 0.00 0.00 2.29
250 251 2.104170 CGGGAGGAGTAGAGCTTTTCT 58.896 52.381 0.00 0.00 40.06 2.52
251 252 2.498078 CGGGAGGAGTAGAGCTTTTCTT 59.502 50.000 0.00 0.00 37.36 2.52
252 253 3.677424 CGGGAGGAGTAGAGCTTTTCTTG 60.677 52.174 0.00 0.00 37.36 3.02
253 254 3.266636 GGAGGAGTAGAGCTTTTCTTGC 58.733 50.000 0.00 0.00 37.36 4.01
254 255 2.926838 GAGGAGTAGAGCTTTTCTTGCG 59.073 50.000 0.00 0.00 37.36 4.85
255 256 2.300437 AGGAGTAGAGCTTTTCTTGCGT 59.700 45.455 0.00 0.00 37.36 5.24
256 257 3.510360 AGGAGTAGAGCTTTTCTTGCGTA 59.490 43.478 0.00 0.00 37.36 4.42
257 258 3.860536 GGAGTAGAGCTTTTCTTGCGTAG 59.139 47.826 0.00 0.00 37.36 3.51
258 259 3.851098 AGTAGAGCTTTTCTTGCGTAGG 58.149 45.455 0.00 0.00 37.36 3.18
259 260 3.510360 AGTAGAGCTTTTCTTGCGTAGGA 59.490 43.478 0.00 0.00 37.36 2.94
260 261 2.966050 AGAGCTTTTCTTGCGTAGGAG 58.034 47.619 0.00 0.00 29.61 3.69
261 262 2.003301 GAGCTTTTCTTGCGTAGGAGG 58.997 52.381 0.00 0.00 35.28 4.30
262 263 1.623811 AGCTTTTCTTGCGTAGGAGGA 59.376 47.619 0.00 0.00 35.28 3.71
270 271 3.003113 GCGTAGGAGGACCTTGCGT 62.003 63.158 0.00 0.00 45.36 5.24
287 288 0.042708 CGTGTAGCATTGCTCGCATC 60.043 55.000 15.81 9.24 40.44 3.91
410 422 2.175715 CCCTTTTCTCCCCCTAATCCAG 59.824 54.545 0.00 0.00 0.00 3.86
439 451 2.117156 CCAGCCAAAGATCAGCCCG 61.117 63.158 0.00 0.00 0.00 6.13
496 509 8.816144 CATTGTTGAGCTTAAACTTAGCAAAAA 58.184 29.630 12.74 0.66 41.11 1.94
534 547 3.130516 GTGGCTTGGTTATAAAGGGAAGC 59.869 47.826 0.00 0.00 36.02 3.86
554 567 0.693049 TTCAGGAAGGAAGGAGTGCC 59.307 55.000 0.00 0.00 0.00 5.01
555 568 1.201429 TCAGGAAGGAAGGAGTGCCC 61.201 60.000 0.00 0.00 33.31 5.36
556 569 1.925972 AGGAAGGAAGGAGTGCCCC 60.926 63.158 0.00 0.00 34.66 5.80
557 570 2.231380 GGAAGGAAGGAGTGCCCCA 61.231 63.158 0.00 0.00 34.66 4.96
558 571 1.301293 GAAGGAAGGAGTGCCCCAG 59.699 63.158 0.00 0.00 34.66 4.45
559 572 1.464198 AAGGAAGGAGTGCCCCAGT 60.464 57.895 0.00 0.00 34.66 4.00
560 573 1.783250 AAGGAAGGAGTGCCCCAGTG 61.783 60.000 0.00 0.00 34.66 3.66
561 574 2.224159 GGAAGGAGTGCCCCAGTGA 61.224 63.158 0.00 0.00 34.66 3.41
662 685 1.494721 ACTCTCCAGGCCAAACAGAAA 59.505 47.619 5.01 0.00 0.00 2.52
691 714 2.032634 GCGAAGGACACATCGGCAA 61.033 57.895 0.00 0.00 39.38 4.52
708 731 2.009774 GCAATTATCCATCGATCGGGG 58.990 52.381 16.41 16.98 0.00 5.73
1037 1075 0.244721 CACGTCATCAGCTCCACTCA 59.755 55.000 0.00 0.00 0.00 3.41
1306 1363 2.031163 GCTCAGGAGGCACGTGTT 59.969 61.111 18.38 5.87 36.04 3.32
1331 1388 6.149129 AGCTTTGTTTTGGAGAAGTTTAGG 57.851 37.500 0.00 0.00 0.00 2.69
1495 1553 8.347004 TCTCCATCATCTCAAGTATGATACTC 57.653 38.462 5.45 0.00 41.13 2.59
1496 1554 7.946776 TCTCCATCATCTCAAGTATGATACTCA 59.053 37.037 5.45 0.00 41.13 3.41
1498 1556 9.097946 TCCATCATCTCAAGTATGATACTCAAT 57.902 33.333 5.45 0.00 41.13 2.57
1499 1557 9.722184 CCATCATCTCAAGTATGATACTCAATT 57.278 33.333 5.45 0.00 41.13 2.32
1617 1911 7.963981 TCAAGTATTTGATCTTTGACATCGTC 58.036 34.615 0.00 0.00 38.37 4.20
1620 1914 4.668576 TTTGATCTTTGACATCGTCTGC 57.331 40.909 0.00 0.00 33.15 4.26
1672 1966 1.600636 CTGTGACCCGCCAACACAT 60.601 57.895 0.00 0.00 42.30 3.21
2263 2563 3.067040 GGCTGCTAAGTGAGTAGTACTCC 59.933 52.174 24.32 16.39 44.44 3.85
2264 2564 3.067040 GCTGCTAAGTGAGTAGTACTCCC 59.933 52.174 24.32 15.25 44.44 4.30
2265 2565 4.528920 CTGCTAAGTGAGTAGTACTCCCT 58.471 47.826 24.32 17.21 44.44 4.20
2266 2566 4.931914 TGCTAAGTGAGTAGTACTCCCTT 58.068 43.478 25.16 25.16 44.44 3.95
2267 2567 5.331069 TGCTAAGTGAGTAGTACTCCCTTT 58.669 41.667 26.43 19.00 39.37 3.11
2268 2568 5.778750 TGCTAAGTGAGTAGTACTCCCTTTT 59.221 40.000 26.43 17.11 39.37 2.27
2269 2569 6.269307 TGCTAAGTGAGTAGTACTCCCTTTTT 59.731 38.462 26.43 15.77 39.37 1.94
2313 2613 9.170734 TGTACTCTTACTGAATACGTACTGATT 57.829 33.333 0.00 0.00 30.68 2.57
2332 2632 6.073765 ACTGATTGACGTGTACATGAGAAAAC 60.074 38.462 21.82 10.96 0.00 2.43
2342 2642 4.574599 ACATGAGAAAACCAAGTTCTGC 57.425 40.909 0.00 0.00 35.46 4.26
2345 2645 5.127682 ACATGAGAAAACCAAGTTCTGCTTT 59.872 36.000 0.00 0.00 35.46 3.51
2348 2648 6.099341 TGAGAAAACCAAGTTCTGCTTTTTC 58.901 36.000 0.00 0.00 35.46 2.29
2349 2649 5.419542 AGAAAACCAAGTTCTGCTTTTTCC 58.580 37.500 0.00 0.00 36.78 3.13
2350 2650 3.819564 AACCAAGTTCTGCTTTTTCCC 57.180 42.857 0.00 0.00 34.69 3.97
2366 2666 4.494091 TTTCCCCATCTTTTTGTTTGCA 57.506 36.364 0.00 0.00 0.00 4.08
2374 2674 6.093909 CCCATCTTTTTGTTTGCATATTTCCC 59.906 38.462 0.00 0.00 0.00 3.97
2388 2688 8.900983 TGCATATTTCCCTATTTATTTTTGGC 57.099 30.769 0.00 0.00 0.00 4.52
2397 2697 9.225436 TCCCTATTTATTTTTGGCAAAATGAAC 57.775 29.630 24.61 0.00 41.77 3.18
2467 2767 4.366586 CACTGTATATGTCAGCACTGAGG 58.633 47.826 0.00 0.00 40.75 3.86
2495 2795 2.625639 AGGAACTCTCAGGATTGTGGT 58.374 47.619 0.00 0.00 0.00 4.16
2497 2797 2.611518 GAACTCTCAGGATTGTGGTCG 58.388 52.381 0.00 0.00 0.00 4.79
2532 2832 4.091509 GGTGCGTAGAACAATACAGAACTG 59.908 45.833 0.00 0.00 0.00 3.16
2551 2856 1.000394 TGTGTATGTGTGTCACCCTCG 60.000 52.381 0.00 0.00 32.73 4.63
2603 2908 1.440353 GTGAATGCACGCACGGTTC 60.440 57.895 5.17 0.00 34.94 3.62
2611 2916 0.734942 CACGCACGGTTCGGACTATT 60.735 55.000 5.03 0.00 0.00 1.73
2623 2928 7.384115 ACGGTTCGGACTATTGTATATTCATTG 59.616 37.037 0.00 0.00 0.00 2.82
2625 2930 7.360946 GGTTCGGACTATTGTATATTCATTGGC 60.361 40.741 0.00 0.00 0.00 4.52
2648 2953 6.346678 GGCGACAACTCTTGTTTAGAACTTAG 60.347 42.308 0.00 0.00 45.52 2.18
2666 2971 5.776744 ACTTAGAACTCGGTCGTGTTTTAT 58.223 37.500 11.23 5.14 32.85 1.40
2692 2997 6.690194 TTTGTAGACTTATCGTACTCCTCC 57.310 41.667 0.00 0.00 0.00 4.30
2693 2998 4.375272 TGTAGACTTATCGTACTCCTCCG 58.625 47.826 0.00 0.00 0.00 4.63
2694 2999 3.557228 AGACTTATCGTACTCCTCCGT 57.443 47.619 0.00 0.00 0.00 4.69
2695 3000 3.465871 AGACTTATCGTACTCCTCCGTC 58.534 50.000 0.00 0.00 0.00 4.79
2696 3001 2.547634 GACTTATCGTACTCCTCCGTCC 59.452 54.545 0.00 0.00 0.00 4.79
2697 3002 1.530293 CTTATCGTACTCCTCCGTCCG 59.470 57.143 0.00 0.00 0.00 4.79
2698 3003 0.752658 TATCGTACTCCTCCGTCCGA 59.247 55.000 0.00 0.00 0.00 4.55
2699 3004 0.107508 ATCGTACTCCTCCGTCCGAA 60.108 55.000 0.00 0.00 0.00 4.30
2700 3005 0.321564 TCGTACTCCTCCGTCCGAAA 60.322 55.000 0.00 0.00 0.00 3.46
2701 3006 0.523072 CGTACTCCTCCGTCCGAAAA 59.477 55.000 0.00 0.00 0.00 2.29
2702 3007 1.133790 CGTACTCCTCCGTCCGAAAAT 59.866 52.381 0.00 0.00 0.00 1.82
2703 3008 2.355756 CGTACTCCTCCGTCCGAAAATA 59.644 50.000 0.00 0.00 0.00 1.40
2704 3009 2.955477 ACTCCTCCGTCCGAAAATAC 57.045 50.000 0.00 0.00 0.00 1.89
2705 3010 2.454538 ACTCCTCCGTCCGAAAATACT 58.545 47.619 0.00 0.00 0.00 2.12
2706 3011 2.830321 ACTCCTCCGTCCGAAAATACTT 59.170 45.455 0.00 0.00 0.00 2.24
2707 3012 3.187700 CTCCTCCGTCCGAAAATACTTG 58.812 50.000 0.00 0.00 0.00 3.16
2708 3013 2.564062 TCCTCCGTCCGAAAATACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
2709 3014 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2710 3015 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2711 3016 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2712 3017 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2713 3018 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2714 3019 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2715 3020 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2716 3021 5.788531 CGTCCGAAAATACTTGTCATCAAAC 59.211 40.000 0.00 0.00 32.87 2.93
2717 3022 6.347402 CGTCCGAAAATACTTGTCATCAAACT 60.347 38.462 0.00 0.00 32.87 2.66
2718 3023 7.148705 CGTCCGAAAATACTTGTCATCAAACTA 60.149 37.037 0.00 0.00 32.87 2.24
2725 3030 3.910627 ACTTGTCATCAAACTACCCTCCT 59.089 43.478 0.00 0.00 32.87 3.69
2906 3212 1.827399 GCTCCCTTTCGGTGGTGAGA 61.827 60.000 0.00 0.00 0.00 3.27
3066 3373 3.702048 CCGGGCTTCCCTCGTCAA 61.702 66.667 0.00 0.00 42.67 3.18
3075 3382 0.613853 TCCCTCGTCAAATCGGAGGT 60.614 55.000 5.67 0.00 31.43 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.067985 AGCATCGTCGGAGAGCATATG 60.068 52.381 0.00 0.00 36.95 1.78
1 2 1.252175 AGCATCGTCGGAGAGCATAT 58.748 50.000 0.00 0.00 36.95 1.78
2 3 1.807142 CTAGCATCGTCGGAGAGCATA 59.193 52.381 0.00 0.00 36.95 3.14
3 4 0.595588 CTAGCATCGTCGGAGAGCAT 59.404 55.000 0.00 0.00 36.95 3.79
4 5 0.463833 TCTAGCATCGTCGGAGAGCA 60.464 55.000 0.00 0.00 36.95 4.26
5 6 0.040781 GTCTAGCATCGTCGGAGAGC 60.041 60.000 0.00 0.00 36.95 4.09
6 7 0.233590 CGTCTAGCATCGTCGGAGAG 59.766 60.000 0.00 0.00 36.95 3.20
7 8 2.308344 CGTCTAGCATCGTCGGAGA 58.692 57.895 0.00 0.00 0.00 3.71
19 20 0.586802 TCGTCCGATGATGCGTCTAG 59.413 55.000 7.58 0.00 0.00 2.43
20 21 0.586802 CTCGTCCGATGATGCGTCTA 59.413 55.000 7.58 0.00 0.00 2.59
21 22 1.356979 CTCGTCCGATGATGCGTCT 59.643 57.895 7.58 0.00 0.00 4.18
22 23 1.658717 CCTCGTCCGATGATGCGTC 60.659 63.158 0.00 0.00 0.00 5.19
23 24 1.456196 ATCCTCGTCCGATGATGCGT 61.456 55.000 6.66 0.00 30.33 5.24
24 25 0.521735 TATCCTCGTCCGATGATGCG 59.478 55.000 14.94 0.00 32.98 4.73
25 26 1.813178 TCTATCCTCGTCCGATGATGC 59.187 52.381 14.94 0.00 32.98 3.91
26 27 3.668226 CGTTCTATCCTCGTCCGATGATG 60.668 52.174 14.94 7.49 32.98 3.07
27 28 2.484651 CGTTCTATCCTCGTCCGATGAT 59.515 50.000 11.28 11.28 34.66 2.45
28 29 1.871676 CGTTCTATCCTCGTCCGATGA 59.128 52.381 0.00 0.00 0.00 2.92
29 30 1.602851 ACGTTCTATCCTCGTCCGATG 59.397 52.381 0.00 0.00 32.26 3.84
30 31 1.602851 CACGTTCTATCCTCGTCCGAT 59.397 52.381 0.00 0.00 35.62 4.18
31 32 1.012086 CACGTTCTATCCTCGTCCGA 58.988 55.000 0.00 0.00 35.62 4.55
32 33 0.029035 CCACGTTCTATCCTCGTCCG 59.971 60.000 0.00 0.00 35.62 4.79
33 34 0.384669 CCCACGTTCTATCCTCGTCC 59.615 60.000 0.00 0.00 35.62 4.79
34 35 1.334243 CTCCCACGTTCTATCCTCGTC 59.666 57.143 0.00 0.00 35.62 4.20
35 36 1.064906 TCTCCCACGTTCTATCCTCGT 60.065 52.381 0.00 0.00 38.34 4.18
36 37 1.334243 GTCTCCCACGTTCTATCCTCG 59.666 57.143 0.00 0.00 0.00 4.63
37 38 2.376109 TGTCTCCCACGTTCTATCCTC 58.624 52.381 0.00 0.00 0.00 3.71
38 39 2.526888 TGTCTCCCACGTTCTATCCT 57.473 50.000 0.00 0.00 0.00 3.24
39 40 2.693591 TGATGTCTCCCACGTTCTATCC 59.306 50.000 0.00 0.00 0.00 2.59
40 41 4.592485 ATGATGTCTCCCACGTTCTATC 57.408 45.455 0.00 0.00 0.00 2.08
41 42 4.202264 GGAATGATGTCTCCCACGTTCTAT 60.202 45.833 0.00 0.00 0.00 1.98
42 43 3.132289 GGAATGATGTCTCCCACGTTCTA 59.868 47.826 0.00 0.00 0.00 2.10
43 44 2.093447 GGAATGATGTCTCCCACGTTCT 60.093 50.000 0.00 0.00 0.00 3.01
44 45 2.093447 AGGAATGATGTCTCCCACGTTC 60.093 50.000 0.00 0.00 31.50 3.95
45 46 1.909302 AGGAATGATGTCTCCCACGTT 59.091 47.619 0.00 0.00 31.50 3.99
46 47 1.573108 AGGAATGATGTCTCCCACGT 58.427 50.000 0.00 0.00 31.50 4.49
47 48 2.695666 AGTAGGAATGATGTCTCCCACG 59.304 50.000 0.00 0.00 29.68 4.94
48 49 5.602628 GTTAGTAGGAATGATGTCTCCCAC 58.397 45.833 0.00 0.00 31.50 4.61
49 50 4.341235 CGTTAGTAGGAATGATGTCTCCCA 59.659 45.833 0.00 0.00 31.50 4.37
50 51 4.583489 TCGTTAGTAGGAATGATGTCTCCC 59.417 45.833 0.00 0.00 31.50 4.30
51 52 5.769484 TCGTTAGTAGGAATGATGTCTCC 57.231 43.478 0.00 0.00 0.00 3.71
52 53 6.561614 TGTTCGTTAGTAGGAATGATGTCTC 58.438 40.000 0.00 0.00 31.50 3.36
53 54 6.525578 TGTTCGTTAGTAGGAATGATGTCT 57.474 37.500 0.00 0.00 31.50 3.41
54 55 6.142480 CGATGTTCGTTAGTAGGAATGATGTC 59.858 42.308 0.00 0.00 34.72 3.06
55 56 5.977725 CGATGTTCGTTAGTAGGAATGATGT 59.022 40.000 0.00 0.00 34.72 3.06
56 57 5.107837 GCGATGTTCGTTAGTAGGAATGATG 60.108 44.000 0.00 0.00 42.81 3.07
57 58 4.982916 GCGATGTTCGTTAGTAGGAATGAT 59.017 41.667 0.00 0.00 42.81 2.45
58 59 4.357142 GCGATGTTCGTTAGTAGGAATGA 58.643 43.478 0.00 0.00 42.81 2.57
59 60 3.489785 GGCGATGTTCGTTAGTAGGAATG 59.510 47.826 0.00 0.00 42.81 2.67
60 61 3.714391 GGCGATGTTCGTTAGTAGGAAT 58.286 45.455 0.00 0.00 42.81 3.01
61 62 2.478370 CGGCGATGTTCGTTAGTAGGAA 60.478 50.000 0.00 0.00 42.81 3.36
62 63 1.064505 CGGCGATGTTCGTTAGTAGGA 59.935 52.381 0.00 0.00 42.81 2.94
63 64 1.474017 CGGCGATGTTCGTTAGTAGG 58.526 55.000 0.00 0.00 42.81 3.18
64 65 0.844503 GCGGCGATGTTCGTTAGTAG 59.155 55.000 12.98 0.00 42.81 2.57
65 66 0.526096 GGCGGCGATGTTCGTTAGTA 60.526 55.000 12.98 0.00 42.81 1.82
66 67 1.808390 GGCGGCGATGTTCGTTAGT 60.808 57.895 12.98 0.00 42.81 2.24
67 68 2.856346 CGGCGGCGATGTTCGTTAG 61.856 63.158 29.19 0.00 42.81 2.34
68 69 2.881827 CGGCGGCGATGTTCGTTA 60.882 61.111 29.19 0.00 42.81 3.18
72 73 4.811761 GTTGCGGCGGCGATGTTC 62.812 66.667 36.87 17.41 44.10 3.18
80 81 4.659874 GACGTTGTGTTGCGGCGG 62.660 66.667 9.78 0.00 0.00 6.13
81 82 2.709629 ATTGACGTTGTGTTGCGGCG 62.710 55.000 0.51 0.51 39.30 6.46
82 83 0.996727 GATTGACGTTGTGTTGCGGC 60.997 55.000 0.00 0.00 36.53 6.53
83 84 0.306228 TGATTGACGTTGTGTTGCGG 59.694 50.000 0.00 0.00 0.00 5.69
84 85 2.036217 CTTGATTGACGTTGTGTTGCG 58.964 47.619 0.00 0.00 0.00 4.85
85 86 3.332761 TCTTGATTGACGTTGTGTTGC 57.667 42.857 0.00 0.00 0.00 4.17
86 87 3.665409 GCATCTTGATTGACGTTGTGTTG 59.335 43.478 0.00 0.00 0.00 3.33
87 88 3.565482 AGCATCTTGATTGACGTTGTGTT 59.435 39.130 0.00 0.00 0.00 3.32
88 89 3.058708 CAGCATCTTGATTGACGTTGTGT 60.059 43.478 0.00 0.00 0.00 3.72
89 90 3.187022 TCAGCATCTTGATTGACGTTGTG 59.813 43.478 0.00 0.00 0.00 3.33
90 91 3.187227 GTCAGCATCTTGATTGACGTTGT 59.813 43.478 0.00 0.00 31.72 3.32
91 92 3.434641 AGTCAGCATCTTGATTGACGTTG 59.565 43.478 0.00 0.00 43.48 4.10
92 93 3.668447 AGTCAGCATCTTGATTGACGTT 58.332 40.909 0.00 0.00 43.48 3.99
93 94 3.325293 AGTCAGCATCTTGATTGACGT 57.675 42.857 0.00 0.00 43.48 4.34
94 95 4.176271 TGTAGTCAGCATCTTGATTGACG 58.824 43.478 8.77 0.00 43.48 4.35
95 96 6.486253 TTTGTAGTCAGCATCTTGATTGAC 57.514 37.500 7.13 7.13 40.08 3.18
96 97 7.010460 CGTATTTGTAGTCAGCATCTTGATTGA 59.990 37.037 0.00 0.00 0.00 2.57
97 98 7.010460 TCGTATTTGTAGTCAGCATCTTGATTG 59.990 37.037 0.00 0.00 0.00 2.67
98 99 7.041721 TCGTATTTGTAGTCAGCATCTTGATT 58.958 34.615 0.00 0.00 0.00 2.57
99 100 6.573434 TCGTATTTGTAGTCAGCATCTTGAT 58.427 36.000 0.00 0.00 0.00 2.57
100 101 5.961272 TCGTATTTGTAGTCAGCATCTTGA 58.039 37.500 0.00 0.00 0.00 3.02
101 102 6.036470 TCTCGTATTTGTAGTCAGCATCTTG 58.964 40.000 0.00 0.00 0.00 3.02
102 103 6.208988 TCTCGTATTTGTAGTCAGCATCTT 57.791 37.500 0.00 0.00 0.00 2.40
103 104 5.836821 TCTCGTATTTGTAGTCAGCATCT 57.163 39.130 0.00 0.00 0.00 2.90
104 105 5.052304 CGTTCTCGTATTTGTAGTCAGCATC 60.052 44.000 0.00 0.00 0.00 3.91
105 106 4.798907 CGTTCTCGTATTTGTAGTCAGCAT 59.201 41.667 0.00 0.00 0.00 3.79
106 107 4.163552 CGTTCTCGTATTTGTAGTCAGCA 58.836 43.478 0.00 0.00 0.00 4.41
107 108 3.546670 CCGTTCTCGTATTTGTAGTCAGC 59.453 47.826 0.00 0.00 35.01 4.26
108 109 4.103357 CCCGTTCTCGTATTTGTAGTCAG 58.897 47.826 0.00 0.00 35.01 3.51
109 110 3.119388 CCCCGTTCTCGTATTTGTAGTCA 60.119 47.826 0.00 0.00 35.01 3.41
110 111 3.119352 ACCCCGTTCTCGTATTTGTAGTC 60.119 47.826 0.00 0.00 35.01 2.59
111 112 2.827921 ACCCCGTTCTCGTATTTGTAGT 59.172 45.455 0.00 0.00 35.01 2.73
112 113 3.442100 GACCCCGTTCTCGTATTTGTAG 58.558 50.000 0.00 0.00 35.01 2.74
113 114 2.166254 GGACCCCGTTCTCGTATTTGTA 59.834 50.000 0.00 0.00 35.01 2.41
114 115 1.066645 GGACCCCGTTCTCGTATTTGT 60.067 52.381 0.00 0.00 35.01 2.83
115 116 1.648504 GGACCCCGTTCTCGTATTTG 58.351 55.000 0.00 0.00 35.01 2.32
116 117 0.538584 GGGACCCCGTTCTCGTATTT 59.461 55.000 0.00 0.00 35.01 1.40
117 118 0.325016 AGGGACCCCGTTCTCGTATT 60.325 55.000 7.00 0.00 41.95 1.89
118 119 0.754587 GAGGGACCCCGTTCTCGTAT 60.755 60.000 7.00 0.00 41.95 3.06
119 120 1.379044 GAGGGACCCCGTTCTCGTA 60.379 63.158 7.00 0.00 41.95 3.43
120 121 2.679287 GAGGGACCCCGTTCTCGT 60.679 66.667 7.00 0.00 41.95 4.18
121 122 3.459063 GGAGGGACCCCGTTCTCG 61.459 72.222 7.00 0.00 41.95 4.04
158 159 4.268720 AGGTGCGGAGGATCTCTC 57.731 61.111 0.00 0.00 28.04 3.20
162 163 1.070445 CATGGAGGTGCGGAGGATC 59.930 63.158 0.00 0.00 0.00 3.36
163 164 2.446848 CCATGGAGGTGCGGAGGAT 61.447 63.158 5.56 0.00 0.00 3.24
164 165 3.083349 CCATGGAGGTGCGGAGGA 61.083 66.667 5.56 0.00 0.00 3.71
165 166 4.864334 GCCATGGAGGTGCGGAGG 62.864 72.222 18.40 0.00 40.61 4.30
166 167 4.864334 GGCCATGGAGGTGCGGAG 62.864 72.222 18.40 0.00 40.61 4.63
168 169 4.431131 AAGGCCATGGAGGTGCGG 62.431 66.667 18.40 0.00 40.61 5.69
169 170 3.136123 CAAGGCCATGGAGGTGCG 61.136 66.667 18.40 0.00 40.61 5.34
170 171 3.455469 GCAAGGCCATGGAGGTGC 61.455 66.667 18.40 16.59 40.61 5.01
187 188 1.271054 CCATCTCCGATGGCCTTTAGG 60.271 57.143 3.32 6.02 38.53 2.69
188 189 1.271054 CCCATCTCCGATGGCCTTTAG 60.271 57.143 15.70 0.00 37.85 1.85
189 190 0.764890 CCCATCTCCGATGGCCTTTA 59.235 55.000 15.70 0.00 37.85 1.85
190 191 0.988145 TCCCATCTCCGATGGCCTTT 60.988 55.000 15.70 0.00 37.85 3.11
191 192 1.384502 TCCCATCTCCGATGGCCTT 60.385 57.895 15.70 0.00 37.85 4.35
192 193 2.143419 GTCCCATCTCCGATGGCCT 61.143 63.158 15.70 0.00 37.85 5.19
193 194 2.427753 GTCCCATCTCCGATGGCC 59.572 66.667 15.70 0.00 37.85 5.36
194 195 2.029666 CGTCCCATCTCCGATGGC 59.970 66.667 15.70 4.39 37.85 4.40
195 196 1.832608 TCCGTCCCATCTCCGATGG 60.833 63.158 14.48 14.48 38.88 3.51
196 197 1.364171 GTCCGTCCCATCTCCGATG 59.636 63.158 0.00 0.00 0.00 3.84
197 198 1.833049 GGTCCGTCCCATCTCCGAT 60.833 63.158 0.00 0.00 0.00 4.18
198 199 2.441532 GGTCCGTCCCATCTCCGA 60.442 66.667 0.00 0.00 0.00 4.55
199 200 3.900892 CGGTCCGTCCCATCTCCG 61.901 72.222 2.08 0.00 0.00 4.63
200 201 3.537874 CCGGTCCGTCCCATCTCC 61.538 72.222 11.06 0.00 0.00 3.71
201 202 4.222847 GCCGGTCCGTCCCATCTC 62.223 72.222 11.06 0.00 0.00 2.75
223 224 4.415150 TACTCCTCCCGTCGGCGT 62.415 66.667 9.28 0.00 36.15 5.68
224 225 3.584052 CTACTCCTCCCGTCGGCG 61.584 72.222 0.29 0.29 37.95 6.46
225 226 2.124403 TCTACTCCTCCCGTCGGC 60.124 66.667 5.50 0.00 0.00 5.54
226 227 2.188161 GCTCTACTCCTCCCGTCGG 61.188 68.421 3.60 3.60 0.00 4.79
227 228 0.748729 AAGCTCTACTCCTCCCGTCG 60.749 60.000 0.00 0.00 0.00 5.12
228 229 1.476477 AAAGCTCTACTCCTCCCGTC 58.524 55.000 0.00 0.00 0.00 4.79
229 230 1.826096 GAAAAGCTCTACTCCTCCCGT 59.174 52.381 0.00 0.00 0.00 5.28
230 231 2.104170 AGAAAAGCTCTACTCCTCCCG 58.896 52.381 0.00 0.00 30.22 5.14
231 232 3.867857 CAAGAAAAGCTCTACTCCTCCC 58.132 50.000 0.00 0.00 32.46 4.30
232 233 3.266636 GCAAGAAAAGCTCTACTCCTCC 58.733 50.000 0.00 0.00 32.46 4.30
233 234 2.926838 CGCAAGAAAAGCTCTACTCCTC 59.073 50.000 0.00 0.00 43.02 3.71
234 235 2.300437 ACGCAAGAAAAGCTCTACTCCT 59.700 45.455 0.00 0.00 43.62 3.69
235 236 2.689646 ACGCAAGAAAAGCTCTACTCC 58.310 47.619 0.00 0.00 43.62 3.85
236 237 3.860536 CCTACGCAAGAAAAGCTCTACTC 59.139 47.826 0.00 0.00 43.62 2.59
237 238 3.510360 TCCTACGCAAGAAAAGCTCTACT 59.490 43.478 0.00 0.00 43.62 2.57
238 239 3.846360 TCCTACGCAAGAAAAGCTCTAC 58.154 45.455 0.00 0.00 43.62 2.59
239 240 3.119101 CCTCCTACGCAAGAAAAGCTCTA 60.119 47.826 0.00 0.00 43.62 2.43
240 241 2.354203 CCTCCTACGCAAGAAAAGCTCT 60.354 50.000 0.00 0.00 43.62 4.09
241 242 2.003301 CCTCCTACGCAAGAAAAGCTC 58.997 52.381 0.00 0.00 43.62 4.09
242 243 1.623811 TCCTCCTACGCAAGAAAAGCT 59.376 47.619 0.00 0.00 43.62 3.74
243 244 1.732809 GTCCTCCTACGCAAGAAAAGC 59.267 52.381 0.00 0.00 43.62 3.51
244 245 2.028020 AGGTCCTCCTACGCAAGAAAAG 60.028 50.000 0.00 0.00 43.12 2.27
245 246 1.975680 AGGTCCTCCTACGCAAGAAAA 59.024 47.619 0.00 0.00 43.12 2.29
246 247 1.640917 AGGTCCTCCTACGCAAGAAA 58.359 50.000 0.00 0.00 43.12 2.52
247 248 1.275291 CAAGGTCCTCCTACGCAAGAA 59.725 52.381 0.00 0.00 44.35 2.52
248 249 0.895530 CAAGGTCCTCCTACGCAAGA 59.104 55.000 0.00 0.00 44.35 3.02
249 250 0.741221 GCAAGGTCCTCCTACGCAAG 60.741 60.000 0.00 0.00 44.35 4.01
250 251 1.295423 GCAAGGTCCTCCTACGCAA 59.705 57.895 0.00 0.00 44.35 4.85
251 252 2.978824 GCAAGGTCCTCCTACGCA 59.021 61.111 0.00 0.00 44.35 5.24
252 253 2.202756 CGCAAGGTCCTCCTACGC 60.203 66.667 0.00 0.00 44.35 4.42
253 254 1.153823 CACGCAAGGTCCTCCTACG 60.154 63.158 0.00 0.00 44.35 3.51
254 255 1.134560 CTACACGCAAGGTCCTCCTAC 59.865 57.143 0.00 0.00 44.35 3.18
255 256 1.471119 CTACACGCAAGGTCCTCCTA 58.529 55.000 0.00 0.00 44.35 2.94
257 258 1.448013 GCTACACGCAAGGTCCTCC 60.448 63.158 0.00 0.00 46.39 4.30
258 259 4.187056 GCTACACGCAAGGTCCTC 57.813 61.111 0.00 0.00 46.39 3.71
270 271 1.153597 CCGATGCGAGCAATGCTACA 61.154 55.000 8.12 10.49 39.88 2.74
287 288 7.951530 TTTTGGAGTAAGTTAGACTTAACCG 57.048 36.000 14.56 0.00 41.80 4.44
410 422 0.463620 TTTGGCTGGCAGTTTTCCAC 59.536 50.000 17.16 0.00 0.00 4.02
439 451 7.542025 TCAACGGAGAGTTACTTAAGGATTAC 58.458 38.462 7.53 0.00 42.02 1.89
496 509 1.475682 GCCACCTGCTACTAGTTACGT 59.524 52.381 0.00 0.00 36.87 3.57
534 547 1.339535 GGCACTCCTTCCTTCCTGAAG 60.340 57.143 0.00 0.00 41.15 3.02
554 567 2.529136 TGGGACTGGGTCACTGGG 60.529 66.667 1.63 0.00 36.82 4.45
555 568 2.750350 GTGGGACTGGGTCACTGG 59.250 66.667 1.63 0.00 36.82 4.00
556 569 2.343758 CGTGGGACTGGGTCACTG 59.656 66.667 1.63 0.00 36.82 3.66
557 570 3.626924 GCGTGGGACTGGGTCACT 61.627 66.667 1.63 0.00 36.82 3.41
558 571 3.936203 TGCGTGGGACTGGGTCAC 61.936 66.667 0.14 0.00 36.36 3.67
559 572 3.936203 GTGCGTGGGACTGGGTCA 61.936 66.667 0.14 0.00 33.68 4.02
560 573 3.591254 GAGTGCGTGGGACTGGGTC 62.591 68.421 0.00 0.00 0.00 4.46
561 574 3.626924 GAGTGCGTGGGACTGGGT 61.627 66.667 0.00 0.00 0.00 4.51
588 604 3.582164 GGAGATAAGGATGGGACTGACT 58.418 50.000 0.00 0.00 0.00 3.41
662 685 1.104630 GTCCTTCGCCTAGTAGCTGT 58.895 55.000 0.00 0.00 0.00 4.40
691 714 0.541863 GGCCCCGATCGATGGATAAT 59.458 55.000 22.83 0.00 31.51 1.28
793 816 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
794 817 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
795 818 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
796 819 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
955 993 2.150837 GGTAGCTCGTCGTCGCAAC 61.151 63.158 10.81 0.00 36.96 4.17
956 994 2.177531 GGTAGCTCGTCGTCGCAA 59.822 61.111 10.81 0.00 36.96 4.85
957 995 3.035576 CTGGTAGCTCGTCGTCGCA 62.036 63.158 10.81 0.00 36.96 5.10
1148 1195 1.135972 CACGCAAAGATTCCAAGGACG 60.136 52.381 0.00 0.00 0.00 4.79
1254 1302 1.142060 TCCCTTCCTTCCGTTTTCCA 58.858 50.000 0.00 0.00 0.00 3.53
1255 1303 2.281539 TTCCCTTCCTTCCGTTTTCC 57.718 50.000 0.00 0.00 0.00 3.13
1256 1304 2.031420 CGTTTCCCTTCCTTCCGTTTTC 60.031 50.000 0.00 0.00 0.00 2.29
1306 1363 5.659440 AAACTTCTCCAAAACAAAGCTCA 57.341 34.783 0.00 0.00 0.00 4.26
1331 1388 0.040067 CAGTTGGCGAGTTCCAAAGC 60.040 55.000 0.00 0.00 46.63 3.51
1408 1465 7.815840 TGATTGTAACTTGAAAGATTGTCCA 57.184 32.000 0.00 0.00 0.00 4.02
1459 1517 9.829507 CTTGAGATGATGGAGAATTAGTTAGTT 57.170 33.333 0.00 0.00 0.00 2.24
1460 1518 8.986991 ACTTGAGATGATGGAGAATTAGTTAGT 58.013 33.333 0.00 0.00 0.00 2.24
1470 1528 7.946776 TGAGTATCATACTTGAGATGATGGAGA 59.053 37.037 0.00 0.00 42.56 3.71
1821 2115 2.112297 GGTGTCGAAGGTGCCCAA 59.888 61.111 0.00 0.00 0.00 4.12
2283 2583 8.663911 AGTACGTATTCAGTAAGAGTACAACTC 58.336 37.037 0.00 0.00 45.38 3.01
2284 2584 8.449397 CAGTACGTATTCAGTAAGAGTACAACT 58.551 37.037 0.00 0.00 38.86 3.16
2285 2585 8.446273 TCAGTACGTATTCAGTAAGAGTACAAC 58.554 37.037 0.00 0.00 38.86 3.32
2286 2586 8.552083 TCAGTACGTATTCAGTAAGAGTACAA 57.448 34.615 0.00 0.00 38.86 2.41
2287 2587 8.728337 ATCAGTACGTATTCAGTAAGAGTACA 57.272 34.615 0.00 0.00 38.86 2.90
2288 2588 9.435802 CAATCAGTACGTATTCAGTAAGAGTAC 57.564 37.037 0.00 0.00 36.42 2.73
2289 2589 9.387257 TCAATCAGTACGTATTCAGTAAGAGTA 57.613 33.333 0.00 0.00 0.00 2.59
2290 2590 8.182881 GTCAATCAGTACGTATTCAGTAAGAGT 58.817 37.037 0.00 0.00 0.00 3.24
2291 2591 7.373703 CGTCAATCAGTACGTATTCAGTAAGAG 59.626 40.741 0.00 0.00 34.48 2.85
2292 2592 7.184779 CGTCAATCAGTACGTATTCAGTAAGA 58.815 38.462 0.00 0.00 34.48 2.10
2293 2593 7.364878 CGTCAATCAGTACGTATTCAGTAAG 57.635 40.000 0.00 0.00 34.48 2.34
2313 2613 4.061357 TGGTTTTCTCATGTACACGTCA 57.939 40.909 0.00 0.00 0.00 4.35
2332 2632 2.038659 TGGGGAAAAAGCAGAACTTGG 58.961 47.619 0.00 0.00 39.09 3.61
2342 2642 5.356470 TGCAAACAAAAAGATGGGGAAAAAG 59.644 36.000 0.00 0.00 0.00 2.27
2345 2645 4.494091 TGCAAACAAAAAGATGGGGAAA 57.506 36.364 0.00 0.00 0.00 3.13
2348 2648 6.093909 GGAAATATGCAAACAAAAAGATGGGG 59.906 38.462 0.00 0.00 0.00 4.96
2349 2649 6.093909 GGGAAATATGCAAACAAAAAGATGGG 59.906 38.462 0.00 0.00 0.00 4.00
2350 2650 6.880529 AGGGAAATATGCAAACAAAAAGATGG 59.119 34.615 0.00 0.00 0.00 3.51
2388 2688 7.015226 TCTAGTGTTGTGTCTGTTCATTTTG 57.985 36.000 0.00 0.00 0.00 2.44
2397 2697 3.060272 CGCTGTTTCTAGTGTTGTGTCTG 60.060 47.826 0.00 0.00 0.00 3.51
2467 2767 1.548269 CCTGAGAGTTCCTCACCACTC 59.452 57.143 0.00 0.00 46.38 3.51
2495 2795 1.721664 CGCACCCTATCCGAGTTCGA 61.722 60.000 2.59 0.00 43.02 3.71
2497 2797 1.001597 CTACGCACCCTATCCGAGTTC 60.002 57.143 0.00 0.00 0.00 3.01
2532 2832 1.671850 CCGAGGGTGACACACATACAC 60.672 57.143 11.16 0.00 35.86 2.90
2551 2856 4.806342 ATTTATACGTGCATTTCGTCCC 57.194 40.909 3.93 0.00 41.72 4.46
2603 2908 5.867174 TCGCCAATGAATATACAATAGTCCG 59.133 40.000 0.00 0.00 0.00 4.79
2611 2916 5.670485 AGAGTTGTCGCCAATGAATATACA 58.330 37.500 0.00 0.00 32.11 2.29
2623 2928 3.808174 AGTTCTAAACAAGAGTTGTCGCC 59.192 43.478 0.00 0.00 44.59 5.54
2625 2930 7.925703 TCTAAGTTCTAAACAAGAGTTGTCG 57.074 36.000 0.00 0.00 44.59 4.35
2630 2935 7.146648 CCGAGTTCTAAGTTCTAAACAAGAGT 58.853 38.462 0.00 0.00 35.05 3.24
2648 2953 7.293018 ACAAAATATAAAACACGACCGAGTTC 58.707 34.615 5.77 0.00 0.00 3.01
2666 2971 8.844244 GGAGGAGTACGATAAGTCTACAAAATA 58.156 37.037 0.00 0.00 0.00 1.40
2683 2988 2.955477 ATTTTCGGACGGAGGAGTAC 57.045 50.000 0.00 0.00 0.00 2.73
2684 2989 3.624777 AGTATTTTCGGACGGAGGAGTA 58.375 45.455 0.00 0.00 0.00 2.59
2685 2990 2.454538 AGTATTTTCGGACGGAGGAGT 58.545 47.619 0.00 0.00 0.00 3.85
2686 2991 3.187700 CAAGTATTTTCGGACGGAGGAG 58.812 50.000 0.00 0.00 0.00 3.69
2687 2992 2.564062 ACAAGTATTTTCGGACGGAGGA 59.436 45.455 0.00 0.00 0.00 3.71
2688 2993 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2689 2994 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2690 2995 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2691 2996 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2692 2997 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2693 2998 6.899114 AGTTTGATGACAAGTATTTTCGGAC 58.101 36.000 0.00 0.00 37.32 4.79
2694 2999 7.118680 GGTAGTTTGATGACAAGTATTTTCGGA 59.881 37.037 0.00 0.00 37.32 4.55
2695 3000 7.241376 GGTAGTTTGATGACAAGTATTTTCGG 58.759 38.462 0.00 0.00 37.32 4.30
2696 3001 7.119262 AGGGTAGTTTGATGACAAGTATTTTCG 59.881 37.037 0.00 0.00 37.32 3.46
2697 3002 8.336801 AGGGTAGTTTGATGACAAGTATTTTC 57.663 34.615 0.00 0.00 37.32 2.29
2698 3003 7.393515 GGAGGGTAGTTTGATGACAAGTATTTT 59.606 37.037 0.00 0.00 37.32 1.82
2699 3004 6.884836 GGAGGGTAGTTTGATGACAAGTATTT 59.115 38.462 0.00 0.00 37.32 1.40
2700 3005 6.215636 AGGAGGGTAGTTTGATGACAAGTATT 59.784 38.462 0.00 0.00 37.32 1.89
2701 3006 5.726793 AGGAGGGTAGTTTGATGACAAGTAT 59.273 40.000 0.00 0.00 37.32 2.12
2702 3007 5.091552 AGGAGGGTAGTTTGATGACAAGTA 58.908 41.667 0.00 0.00 37.32 2.24
2703 3008 3.910627 AGGAGGGTAGTTTGATGACAAGT 59.089 43.478 0.00 0.00 37.32 3.16
2704 3009 4.559862 AGGAGGGTAGTTTGATGACAAG 57.440 45.455 0.00 0.00 37.32 3.16
2705 3010 4.506625 CCAAGGAGGGTAGTTTGATGACAA 60.507 45.833 0.00 0.00 0.00 3.18
2706 3011 3.009033 CCAAGGAGGGTAGTTTGATGACA 59.991 47.826 0.00 0.00 0.00 3.58
2707 3012 3.610911 CCAAGGAGGGTAGTTTGATGAC 58.389 50.000 0.00 0.00 0.00 3.06
2708 3013 2.026262 GCCAAGGAGGGTAGTTTGATGA 60.026 50.000 0.00 0.00 38.09 2.92
2709 3014 2.369394 GCCAAGGAGGGTAGTTTGATG 58.631 52.381 0.00 0.00 38.09 3.07
2710 3015 1.065418 CGCCAAGGAGGGTAGTTTGAT 60.065 52.381 0.00 0.00 38.09 2.57
2711 3016 0.323629 CGCCAAGGAGGGTAGTTTGA 59.676 55.000 0.00 0.00 38.09 2.69
2712 3017 0.676782 CCGCCAAGGAGGGTAGTTTG 60.677 60.000 0.29 0.00 45.00 2.93
2713 3018 1.683441 CCGCCAAGGAGGGTAGTTT 59.317 57.895 0.29 0.00 45.00 2.66
2714 3019 2.967946 GCCGCCAAGGAGGGTAGTT 61.968 63.158 10.98 0.00 45.00 2.24
2715 3020 3.400054 GCCGCCAAGGAGGGTAGT 61.400 66.667 10.98 0.00 45.00 2.73
2716 3021 4.530857 CGCCGCCAAGGAGGGTAG 62.531 72.222 10.98 0.00 45.00 3.18
3056 3363 0.613853 ACCTCCGATTTGACGAGGGA 60.614 55.000 7.23 0.00 36.07 4.20
3075 3382 2.362503 ACGAGCGGACCAGGATCA 60.363 61.111 0.00 0.00 0.00 2.92
3141 3448 0.606401 CCGAACCAGCCACAACATCT 60.606 55.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.