AutoCloner

Multiple sequence alignment - TraesCS7B01G161700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G161700	chr7B	100.000	3785	0	0	1	3785	221916125	221912341	0.000000e+00	6990.0
1	TraesCS7B01G161700	chr7B	98.030	609	11	1	1	609	595535947	595536554	0.000000e+00	1057.0
2	TraesCS7B01G161700	chr7D	95.186	2929	90	30	607	3511	245485792	245482891	0.000000e+00	4580.0
3	TraesCS7B01G161700	chr7D	91.705	217	13	3	3510	3721	245482756	245482540	2.860000e-76	296.0
4	TraesCS7B01G161700	chr7A	94.773	2927	91	32	607	3511	261881420	261878534	0.000000e+00	4501.0
5	TraesCS7B01G161700	chr7A	90.278	216	16	3	3511	3721	261878395	261878180	1.040000e-70	278.0
6	TraesCS7B01G161700	chr1A	99.172	604	5	0	1	604	425731293	425731896	0.000000e+00	1088.0
7	TraesCS7B01G161700	chr4B	99.007	604	6	0	1	604	386042916	386042313	0.000000e+00	1083.0
8	TraesCS7B01G161700	chr4B	98.353	607	10	0	1	607	35512361	35511755	0.000000e+00	1066.0
9	TraesCS7B01G161700	chr4B	98.510	604	9	0	1	604	411530628	411531231	0.000000e+00	1066.0
10	TraesCS7B01G161700	chr5A	98.353	607	10	0	1	607	324965056	324964450	0.000000e+00	1066.0
11	TraesCS7B01G161700	chr5A	98.013	604	12	0	1	604	328723019	328723622	0.000000e+00	1050.0
12	TraesCS7B01G161700	chr5A	77.289	273	39	18	1598	1857	502787402	502787140	5.100000e-29	139.0
13	TraesCS7B01G161700	chr5A	92.593	81	6	0	1448	1528	502787582	502787502	2.390000e-22	117.0
14	TraesCS7B01G161700	chr5A	85.567	97	11	2	1995	2088	502787047	502786951	8.650000e-17	99.0
15	TraesCS7B01G161700	chr6A	98.344	604	10	0	1	604	418951864	418951261	0.000000e+00	1061.0
16	TraesCS7B01G161700	chr5B	98.344	604	10	0	1	604	678521089	678521692	0.000000e+00	1061.0
17	TraesCS7B01G161700	chr5B	76.573	286	35	24	1598	1863	477611046	477610773	1.100000e-25	128.0
18	TraesCS7B01G161700	chr5B	90.361	83	8	0	1446	1528	477611226	477611144	4.000000e-20	110.0
19	TraesCS7B01G161700	chr5B	84.536	97	12	2	1995	2088	477610699	477610603	4.030000e-15	93.5
20	TraesCS7B01G161700	chr5D	77.500	280	38	22	1598	1863	397425887	397425619	1.100000e-30	145.0
21	TraesCS7B01G161700	chr5D	92.771	83	6	0	1446	1528	397426069	397425987	1.850000e-23	121.0
22	TraesCS7B01G161700	chr5D	82.727	110	16	2	1995	2101	397425529	397425420	1.120000e-15	95.3
23	TraesCS7B01G161700	chr4A	100.000	30	0	0	3459	3488	87417896	87417925	5.280000e-04	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G161700	chr7B	221912341	221916125	3784	True	6990.0	6990	100.0000	1	3785	1	chr7B.!!$R1	3784
1	TraesCS7B01G161700	chr7B	595535947	595536554	607	False	1057.0	1057	98.0300	1	609	1	chr7B.!!$F1	608
2	TraesCS7B01G161700	chr7D	245482540	245485792	3252	True	2438.0	4580	93.4455	607	3721	2	chr7D.!!$R1	3114
3	TraesCS7B01G161700	chr7A	261878180	261881420	3240	True	2389.5	4501	92.5255	607	3721	2	chr7A.!!$R1	3114
4	TraesCS7B01G161700	chr1A	425731293	425731896	603	False	1088.0	1088	99.1720	1	604	1	chr1A.!!$F1	603
5	TraesCS7B01G161700	chr4B	386042313	386042916	603	True	1083.0	1083	99.0070	1	604	1	chr4B.!!$R2	603
6	TraesCS7B01G161700	chr4B	35511755	35512361	606	True	1066.0	1066	98.3530	1	607	1	chr4B.!!$R1	606
7	TraesCS7B01G161700	chr4B	411530628	411531231	603	False	1066.0	1066	98.5100	1	604	1	chr4B.!!$F1	603
8	TraesCS7B01G161700	chr5A	324964450	324965056	606	True	1066.0	1066	98.3530	1	607	1	chr5A.!!$R1	606
9	TraesCS7B01G161700	chr5A	328723019	328723622	603	False	1050.0	1050	98.0130	1	604	1	chr5A.!!$F1	603
10	TraesCS7B01G161700	chr6A	418951261	418951864	603	True	1061.0	1061	98.3440	1	604	1	chr6A.!!$R1	603
11	TraesCS7B01G161700	chr5B	678521089	678521692	603	False	1061.0	1061	98.3440	1	604	1	chr5B.!!$F1	603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
911	914	0.746063	CCTCTGCCAACAAGCAACAA	59.254	50.000	0.00	43.52	2.83	F
913	916	1.134753	CTCTGCCAACAAGCAACAACA	59.865	47.619	0.00	43.52	3.33	F
2262	2271	0.620030	TAGCCCAGCTGCATCTCAAA	59.380	50.000	8.66	40.10	2.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
2262	2271	1.064463	GGATGTGGTGTCCATCATGGT	60.064	52.381	2.79	40.38	3.55	R
2381	2390	2.972021	ACTAATTTGGGGCTTTGCTTGT	59.028	40.909	0.00	0.00	3.16	R
3731	3902	0.249031	GGAATGGTATGGCAAAGCGC	60.249	55.000	0.00	41.28	5.92	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
632	635	4.017499	AGTTAGCCATGGGAAATGGTTACT	60.017	41.667	15.13	0.00	41.17	2.24
633	636	2.738743	AGCCATGGGAAATGGTTACTG	58.261	47.619	15.13	0.00	41.17	2.74
672	675	3.746492	AGTCAAAGTCGGCATACTGAAAC	59.254	43.478	0.00	0.00	31.36	2.78
694	697	5.891451	ACTTTGTTACCAGAAAGAAACTGC	58.109	37.500	0.00	0.00	35.67	4.40
793	796	8.562892	GTCTTATCATCTCTCTTTCTCTCTCTG	58.437	40.741	0.00	0.00	0.00	3.35
804	807	1.360852	TCTCTCTCTGCCCCTTTCTCT	59.639	52.381	0.00	0.00	0.00	3.10
805	808	2.187100	CTCTCTCTGCCCCTTTCTCTT	58.813	52.381	0.00	0.00	0.00	2.85
911	914	0.746063	CCTCTGCCAACAAGCAACAA	59.254	50.000	0.00	0.00	43.52	2.83
912	915	1.536709	CCTCTGCCAACAAGCAACAAC	60.537	52.381	0.00	0.00	43.52	3.32
913	916	1.134753	CTCTGCCAACAAGCAACAACA	59.865	47.619	0.00	0.00	43.52	3.33
917	920	1.925229	CCAACAAGCAACAACAGGTG	58.075	50.000	0.00	0.00	0.00	4.00
918	921	1.471327	CCAACAAGCAACAACAGGTGG	60.471	52.381	0.00	0.00	0.00	4.61
920	923	2.425312	CAACAAGCAACAACAGGTGGTA	59.575	45.455	0.00	0.00	0.00	3.25
1019	1026	1.949799	ATGGCAGACTTCTCCTCAGT	58.050	50.000	0.00	0.00	0.00	3.41
1134	1141	2.191513	CCATGGCCAATCTCCAGCG	61.192	63.158	10.96	0.00	36.98	5.18
1153	1160	1.213275	CCAGCAAATGCATGTGCGA	59.787	52.632	31.15	0.00	45.62	5.10
1596	1603	2.655090	TCTTGTTGATCTTGGTGGCA	57.345	45.000	0.00	0.00	0.00	4.92
1615	1622	3.625313	GGCATTTCTCTTTCTCTAGGTGC	59.375	47.826	0.00	0.00	0.00	5.01
1858	1865	3.476552	TGCAGAACCAAGTTGAGGTAAG	58.523	45.455	3.87	0.00	38.76	2.34
1859	1866	2.226674	GCAGAACCAAGTTGAGGTAAGC	59.773	50.000	3.87	0.00	38.76	3.09
1877	1884	1.348696	AGCAAGCCAAATGGGGAAAAG	59.651	47.619	0.90	0.00	37.04	2.27
1891	1898	7.675161	ATGGGGAAAAGAAAAGAGAGAAAAA	57.325	32.000	0.00	0.00	0.00	1.94
1950	1958	4.389374	TCCTTTTAAGAGTTGCTGACCAG	58.611	43.478	0.00	0.00	0.00	4.00
1955	1963	3.996921	AAGAGTTGCTGACCAGATCAT	57.003	42.857	0.47	0.00	36.48	2.45
1956	1964	3.263489	AGAGTTGCTGACCAGATCATG	57.737	47.619	0.47	0.00	36.48	3.07
1995	2004	2.943033	GCTCACTGTTGTACCTGTTGTT	59.057	45.455	0.00	0.00	0.00	2.83
2262	2271	0.620030	TAGCCCAGCTGCATCTCAAA	59.380	50.000	8.66	0.00	40.10	2.69
2381	2390	5.536538	CCTCTCACTTGCTAGACCATATGTA	59.463	44.000	1.04	0.00	0.00	2.29
2559	2569	3.704061	CCAGTAGGGGAAGAGAAAGAGAG	59.296	52.174	0.00	0.00	0.00	3.20
2560	2570	4.570933	CCAGTAGGGGAAGAGAAAGAGAGA	60.571	50.000	0.00	0.00	0.00	3.10
2565	2575	3.008485	GGGGAAGAGAAAGAGAGAAAGCA	59.992	47.826	0.00	0.00	0.00	3.91
2651	2671	3.152341	CAGAGTTTCCATTGGCTTGTCT	58.848	45.455	0.00	0.00	0.00	3.41
2652	2672	3.057736	CAGAGTTTCCATTGGCTTGTCTG	60.058	47.826	0.00	4.46	0.00	3.51
2653	2673	3.149196	GAGTTTCCATTGGCTTGTCTGA	58.851	45.455	0.00	0.00	0.00	3.27
2667	2687	5.182001	GGCTTGTCTGATGTTGTCACTAAAT	59.818	40.000	0.00	0.00	32.22	1.40
2895	2916	6.427974	CATGCTATGCTACACATTTTCAGAG	58.572	40.000	0.00	0.00	40.38	3.35
2981	3002	5.698741	ACCTCAATGGATTCACTGTCATA	57.301	39.130	0.00	0.00	39.71	2.15
3144	3167	4.694982	TCTTTTGCGATGAACATCTGCTTA	59.305	37.500	21.44	12.96	37.82	3.09
3196	3219	9.994432	CTTCTGCTGTTCCAGTTAAATAATTAG	57.006	33.333	0.00	0.00	33.43	1.73
3242	3265	5.327091	CAGTTTCAATGGATGCTTAGTTCG	58.673	41.667	0.00	0.00	0.00	3.95
3436	3462	5.013808	CCGGGGAATTAGTTATAGGAATGGT	59.986	44.000	0.00	0.00	0.00	3.55
3463	3489	4.489737	TGAGAGGGACGGGACATATAATT	58.510	43.478	0.00	0.00	0.00	1.40
3582	3751	3.267031	CCCACTTCTAAACTCCCATTCCT	59.733	47.826	0.00	0.00	0.00	3.36
3589	3758	3.923273	AAACTCCCATTCCTTTTCCCT	57.077	42.857	0.00	0.00	0.00	4.20
3591	3760	3.458044	ACTCCCATTCCTTTTCCCTTC	57.542	47.619	0.00	0.00	0.00	3.46
3606	3775	1.804748	CCCTTCGTAGCCAAACACTTC	59.195	52.381	0.00	0.00	0.00	3.01
3612	3781	3.057033	TCGTAGCCAAACACTTCTCCTAC	60.057	47.826	0.00	0.00	0.00	3.18
3713	3884	6.737254	ATAACAGGGTCAGTAAAATTGACG	57.263	37.500	0.00	0.00	44.56	4.35
3739	3910	4.043200	GGGTCACCTGCGCTTTGC	62.043	66.667	9.73	0.00	46.70	3.68
3740	3911	4.043200	GGTCACCTGCGCTTTGCC	62.043	66.667	9.73	5.23	45.60	4.52
3741	3912	3.286751	GTCACCTGCGCTTTGCCA	61.287	61.111	9.73	0.00	45.60	4.92
3742	3913	2.282391	TCACCTGCGCTTTGCCAT	60.282	55.556	9.73	0.00	45.60	4.40
3743	3914	1.002746	TCACCTGCGCTTTGCCATA	60.003	52.632	9.73	0.00	45.60	2.74
3744	3915	1.137404	CACCTGCGCTTTGCCATAC	59.863	57.895	9.73	0.00	45.60	2.39
3745	3916	2.046285	ACCTGCGCTTTGCCATACC	61.046	57.895	9.73	0.00	45.60	2.73
3746	3917	2.045708	CCTGCGCTTTGCCATACCA	61.046	57.895	9.73	0.00	45.60	3.25
3747	3918	1.386525	CCTGCGCTTTGCCATACCAT	61.387	55.000	9.73	0.00	45.60	3.55
3748	3919	0.457035	CTGCGCTTTGCCATACCATT	59.543	50.000	9.73	0.00	45.60	3.16
3749	3920	0.455410	TGCGCTTTGCCATACCATTC	59.545	50.000	9.73	0.00	45.60	2.67
3750	3921	0.249031	GCGCTTTGCCATACCATTCC	60.249	55.000	0.00	0.00	37.76	3.01
3751	3922	1.102154	CGCTTTGCCATACCATTCCA	58.898	50.000	0.00	0.00	0.00	3.53
3752	3923	1.682854	CGCTTTGCCATACCATTCCAT	59.317	47.619	0.00	0.00	0.00	3.41
3753	3924	2.544277	CGCTTTGCCATACCATTCCATG	60.544	50.000	0.00	0.00	0.00	3.66
3754	3925	2.431782	GCTTTGCCATACCATTCCATGT	59.568	45.455	0.00	0.00	0.00	3.21
3755	3926	3.118665	GCTTTGCCATACCATTCCATGTT	60.119	43.478	0.00	0.00	0.00	2.71
3756	3927	4.623647	GCTTTGCCATACCATTCCATGTTT	60.624	41.667	0.00	0.00	0.00	2.83
3757	3928	4.468765	TTGCCATACCATTCCATGTTTG	57.531	40.909	0.00	0.00	0.00	2.93
3758	3929	2.168106	TGCCATACCATTCCATGTTTGC	59.832	45.455	0.00	0.00	0.00	3.68
3759	3930	2.799207	GCCATACCATTCCATGTTTGCG	60.799	50.000	0.00	0.00	0.00	4.85
3760	3931	2.687425	CCATACCATTCCATGTTTGCGA	59.313	45.455	0.00	0.00	0.00	5.10
3761	3932	3.489059	CCATACCATTCCATGTTTGCGAC	60.489	47.826	0.00	0.00	0.00	5.19
3762	3933	1.909700	ACCATTCCATGTTTGCGACT	58.090	45.000	0.00	0.00	0.00	4.18
3763	3934	2.238521	ACCATTCCATGTTTGCGACTT	58.761	42.857	0.00	0.00	0.00	3.01
3764	3935	2.627699	ACCATTCCATGTTTGCGACTTT	59.372	40.909	0.00	0.00	0.00	2.66
3765	3936	3.069443	ACCATTCCATGTTTGCGACTTTT	59.931	39.130	0.00	0.00	0.00	2.27
3766	3937	4.057432	CCATTCCATGTTTGCGACTTTTT	58.943	39.130	0.00	0.00	0.00	1.94

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	3.649986	GCCGCAACAGTTCACGCT	61.650	61.111	0.46	0.00	0.00	5.07
604	605	4.580580	CCATTTCCCATGGCTAACTAACTC	59.419	45.833	6.09	0.00	31.75	3.01
633	636	8.324163	ACTTTGACTACAATCATTTAGTGGTC	57.676	34.615	0.00	0.00	42.07	4.02
694	697	2.757077	GGTCCCTGTGTCTTGGGG	59.243	66.667	0.00	0.00	43.51	4.96
793	796	2.163509	GACAAGGAAAGAGAAAGGGGC	58.836	52.381	0.00	0.00	0.00	5.80
804	807	1.625818	GAGGAGGCTGAGACAAGGAAA	59.374	52.381	0.00	0.00	0.00	3.13
805	808	1.203237	AGAGGAGGCTGAGACAAGGAA	60.203	52.381	0.00	0.00	0.00	3.36
911	914	0.041386	GGGAGAGGAGTACCACCTGT	59.959	60.000	12.98	9.53	37.93	4.00
912	915	0.688087	GGGGAGAGGAGTACCACCTG	60.688	65.000	12.98	0.00	37.93	4.00
913	916	1.704704	GGGGAGAGGAGTACCACCT	59.295	63.158	8.67	8.67	40.80	4.00
917	920	0.756070	CTTCGGGGGAGAGGAGTACC	60.756	65.000	0.00	0.00	0.00	3.34
918	921	0.258194	TCTTCGGGGGAGAGGAGTAC	59.742	60.000	0.00	0.00	0.00	2.73
920	923	0.116541	TTTCTTCGGGGGAGAGGAGT	59.883	55.000	0.00	0.00	0.00	3.85
1019	1026	0.251832	GAGGAGAGAGTGGTGGTGGA	60.252	60.000	0.00	0.00	0.00	4.02
1052	1059	1.202927	AGGTGTCATTGGTGGTGAAGG	60.203	52.381	0.00	0.00	0.00	3.46
1125	1132	1.077212	ATTTGCTGGCGCTGGAGAT	60.077	52.632	7.64	0.00	36.97	2.75
1134	1141	2.449525	CGCACATGCATTTGCTGGC	61.450	57.895	29.48	9.15	42.21	4.85
1153	1160	1.620589	AGGCATCCTCCACCATGGT	60.621	57.895	13.00	13.00	39.03	3.55
1512	1519	3.701542	CTGTACATACCCTCTCTGCAAGA	59.298	47.826	0.00	0.00	43.69	3.02
1596	1603	3.769844	TCCGCACCTAGAGAAAGAGAAAT	59.230	43.478	0.00	0.00	0.00	2.17
1615	1622	0.106469	TCACTGATCCTCTCCCTCCG	60.106	60.000	0.00	0.00	0.00	4.63
1858	1865	1.347378	TCTTTTCCCCATTTGGCTTGC	59.653	47.619	0.00	0.00	0.00	4.01
1859	1866	3.767902	TTCTTTTCCCCATTTGGCTTG	57.232	42.857	0.00	0.00	0.00	4.01
1891	1898	3.755378	GCATCAGGTGTTTCTTGACATCT	59.245	43.478	0.00	0.00	41.55	2.90
1935	1942	3.008813	ACATGATCTGGTCAGCAACTCTT	59.991	43.478	0.00	0.00	40.92	2.85
1938	1946	4.767578	ATACATGATCTGGTCAGCAACT	57.232	40.909	0.00	0.00	40.92	3.16
1955	1963	9.317936	CAGTGAGCTTCTCATTACATTAATACA	57.682	33.333	0.00	0.00	42.73	2.29
1956	1964	9.319143	ACAGTGAGCTTCTCATTACATTAATAC	57.681	33.333	0.00	0.00	42.73	1.89
2262	2271	1.064463	GGATGTGGTGTCCATCATGGT	60.064	52.381	2.79	0.00	40.38	3.55
2381	2390	2.972021	ACTAATTTGGGGCTTTGCTTGT	59.028	40.909	0.00	0.00	0.00	3.16
2559	2569	6.980397	CCTATTGTCAATATGGGTTTGCTTTC	59.020	38.462	5.74	0.00	0.00	2.62
2560	2570	6.440328	ACCTATTGTCAATATGGGTTTGCTTT	59.560	34.615	17.93	1.44	33.57	3.51
2565	2575	8.999895	AGTAGTACCTATTGTCAATATGGGTTT	58.000	33.333	17.28	11.17	37.87	3.27
2631	2651	3.152341	CAGACAAGCCAATGGAAACTCT	58.848	45.455	2.05	0.00	0.00	3.24
2704	2724	8.970020	AGGATAAACATAAATTGCTGTCATTCA	58.030	29.630	0.00	0.00	0.00	2.57
2735	2755	9.140286	GCCTGTTCAGGTAAGAAATAAATTTTC	57.860	33.333	18.42	0.00	0.00	2.29
2736	2756	7.812669	CGCCTGTTCAGGTAAGAAATAAATTTT	59.187	33.333	18.42	0.00	0.00	1.82
2737	2757	7.312899	CGCCTGTTCAGGTAAGAAATAAATTT	58.687	34.615	18.42	0.00	0.00	1.82
2738	2758	6.625081	GCGCCTGTTCAGGTAAGAAATAAATT	60.625	38.462	18.42	0.00	0.00	1.82
2739	2759	5.163652	GCGCCTGTTCAGGTAAGAAATAAAT	60.164	40.000	18.42	0.00	0.00	1.40
2895	2916	6.533367	GCTGCTTGCTACAGATATTATAGGTC	59.467	42.308	5.54	0.00	37.32	3.85
3144	3167	4.533707	TCCTCATCCTGACACTGAAAAGAT	59.466	41.667	0.00	0.00	0.00	2.40
3196	3219	5.127031	TGCCATATCTCTTTGCCCTAAAAAC	59.873	40.000	0.00	0.00	0.00	2.43
3242	3265	1.072331	TGCAGGAGAGACAGGGAAAAC	59.928	52.381	0.00	0.00	0.00	2.43
3436	3462	2.542550	TGTCCCGTCCCTCTCAAATTA	58.457	47.619	0.00	0.00	0.00	1.40
3463	3489	1.337118	GCCCTCCAACCAAACAATGA	58.663	50.000	0.00	0.00	0.00	2.57
3524	3690	1.628846	AGGCTTGGGACGATGTTTAGT	59.371	47.619	0.00	0.00	0.00	2.24
3530	3696	1.417890	AGGATTAGGCTTGGGACGATG	59.582	52.381	0.00	0.00	0.00	3.84
3582	3751	2.619646	GTGTTTGGCTACGAAGGGAAAA	59.380	45.455	0.00	0.00	0.00	2.29
3589	3758	2.367567	AGGAGAAGTGTTTGGCTACGAA	59.632	45.455	0.00	0.00	0.00	3.85
3591	3760	2.457366	AGGAGAAGTGTTTGGCTACG	57.543	50.000	0.00	0.00	0.00	3.51
3691	3862	4.453136	GCGTCAATTTTACTGACCCTGTTA	59.547	41.667	0.00	0.00	40.11	2.41
3713	3884	3.450115	AGGTGACCCTCGCTACGC	61.450	66.667	0.00	0.00	35.62	4.42
3721	3892	2.281761	CAAAGCGCAGGTGACCCT	60.282	61.111	11.47	0.00	44.02	4.34
3722	3893	4.043200	GCAAAGCGCAGGTGACCC	62.043	66.667	11.47	0.00	41.79	4.46
3723	3894	4.043200	GGCAAAGCGCAGGTGACC	62.043	66.667	11.47	0.00	45.17	4.02
3724	3895	1.305219	TATGGCAAAGCGCAGGTGAC	61.305	55.000	11.47	7.08	45.17	3.67
3725	3896	1.002746	TATGGCAAAGCGCAGGTGA	60.003	52.632	11.47	0.00	45.17	4.02
3726	3897	1.137404	GTATGGCAAAGCGCAGGTG	59.863	57.895	11.47	5.27	45.17	4.00
3727	3898	2.046285	GGTATGGCAAAGCGCAGGT	61.046	57.895	11.47	0.00	45.17	4.00
3728	3899	1.386525	ATGGTATGGCAAAGCGCAGG	61.387	55.000	11.47	0.00	45.17	4.85
3729	3900	0.457035	AATGGTATGGCAAAGCGCAG	59.543	50.000	11.47	0.00	45.17	5.18
3730	3901	0.455410	GAATGGTATGGCAAAGCGCA	59.545	50.000	11.47	0.00	45.17	6.09
3731	3902	0.249031	GGAATGGTATGGCAAAGCGC	60.249	55.000	0.00	0.00	41.28	5.92
3732	3903	1.102154	TGGAATGGTATGGCAAAGCG	58.898	50.000	0.00	0.00	0.00	4.68
3733	3904	3.102052	CATGGAATGGTATGGCAAAGC	57.898	47.619	0.00	0.00	41.79	3.51

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.