Multiple sequence alignment - TraesCS7B01G161400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G161400 chr7B 100.000 2479 0 0 982 3460 220428434 220430912 0.000000e+00 4578.0
1 TraesCS7B01G161400 chr7B 100.000 690 0 0 1 690 220427453 220428142 0.000000e+00 1275.0
2 TraesCS7B01G161400 chr7B 93.349 857 48 3 2613 3460 220153308 220154164 0.000000e+00 1258.0
3 TraesCS7B01G161400 chr7B 86.304 1139 66 30 1364 2440 220145846 220146956 0.000000e+00 1157.0
4 TraesCS7B01G161400 chr7B 91.753 194 9 3 2430 2617 220150754 220150946 2.650000e-66 263.0
5 TraesCS7B01G161400 chr7D 91.720 2041 113 32 1364 3358 244793480 244795510 0.000000e+00 2782.0
6 TraesCS7B01G161400 chr7D 90.187 1498 95 15 2004 3460 225834747 225833261 0.000000e+00 1905.0
7 TraesCS7B01G161400 chr7D 89.083 687 43 14 1364 2021 225835438 225834755 0.000000e+00 824.0
8 TraesCS7B01G161400 chr7D 83.047 407 28 14 982 1349 225835823 225835419 7.160000e-87 331.0
9 TraesCS7B01G161400 chr7D 92.958 71 4 1 621 690 32094138 32094208 6.110000e-18 102.0
10 TraesCS7B01G161400 chr7A 88.873 2166 120 41 1364 3460 260910517 260912630 0.000000e+00 2553.0
11 TraesCS7B01G161400 chr7A 97.727 44 1 0 1306 1349 260910493 260910536 3.700000e-10 76.8
12 TraesCS7B01G161400 chr1B 97.143 70 2 0 621 690 443470202 443470271 6.070000e-23 119.0
13 TraesCS7B01G161400 chr3D 78.333 180 36 3 344 520 170582130 170582309 2.820000e-21 113.0
14 TraesCS7B01G161400 chr3D 85.714 70 10 0 621 690 572146337 572146406 1.330000e-09 75.0
15 TraesCS7B01G161400 chr6D 84.483 116 13 4 420 532 339001266 339001153 3.650000e-20 110.0
16 TraesCS7B01G161400 chr5B 94.286 70 4 0 621 690 536839502 536839571 1.310000e-19 108.0
17 TraesCS7B01G161400 chr2D 79.825 114 19 4 5 117 177865671 177865561 2.860000e-11 80.5
18 TraesCS7B01G161400 chr5A 87.879 66 8 0 13 78 674828878 674828943 1.030000e-10 78.7
19 TraesCS7B01G161400 chr5A 87.879 66 8 0 13 78 674870279 674870344 1.030000e-10 78.7
20 TraesCS7B01G161400 chr5A 89.474 57 5 1 4 60 547506753 547506698 1.720000e-08 71.3
21 TraesCS7B01G161400 chr2B 78.704 108 18 4 13 117 721911207 721911312 2.230000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G161400 chr7B 220427453 220430912 3459 False 2926.500000 4578 100.000000 1 3460 2 chr7B.!!$F2 3459
1 TraesCS7B01G161400 chr7B 220145846 220154164 8318 False 892.666667 1258 90.468667 1364 3460 3 chr7B.!!$F1 2096
2 TraesCS7B01G161400 chr7D 244793480 244795510 2030 False 2782.000000 2782 91.720000 1364 3358 1 chr7D.!!$F2 1994
3 TraesCS7B01G161400 chr7D 225833261 225835823 2562 True 1020.000000 1905 87.439000 982 3460 3 chr7D.!!$R1 2478
4 TraesCS7B01G161400 chr7A 260910493 260912630 2137 False 1314.900000 2553 93.300000 1306 3460 2 chr7A.!!$F1 2154

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
569 570 0.042448 CTTATTTACGCCCGCGCTTC 60.042 55.0 9.37 0.0 44.19 3.86 F
1329 1369 0.107703 CAGCAGAAAGGGCGTGGATA 60.108 55.0 0.00 0.0 36.08 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1482 1544 1.136891 TCATCACCGTGCTATGGACAG 59.863 52.381 0.0 0.0 0.00 3.51 R
2625 8983 0.179009 ATGGGGTGGATCAGCAATCG 60.179 55.000 0.0 0.0 34.99 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 7.801547 ATGTAGATTCATTTTTGTTGCTTCG 57.198 32.000 0.00 0.00 0.00 3.79
59 60 6.734137 TGTAGATTCATTTTTGTTGCTTCGT 58.266 32.000 0.00 0.00 0.00 3.85
60 61 7.866729 TGTAGATTCATTTTTGTTGCTTCGTA 58.133 30.769 0.00 0.00 0.00 3.43
61 62 8.511321 TGTAGATTCATTTTTGTTGCTTCGTAT 58.489 29.630 0.00 0.00 0.00 3.06
62 63 7.801547 AGATTCATTTTTGTTGCTTCGTATG 57.198 32.000 0.00 0.00 0.00 2.39
63 64 7.370383 AGATTCATTTTTGTTGCTTCGTATGT 58.630 30.769 0.00 0.00 0.00 2.29
64 65 8.511321 AGATTCATTTTTGTTGCTTCGTATGTA 58.489 29.630 0.00 0.00 0.00 2.29
65 66 9.123709 GATTCATTTTTGTTGCTTCGTATGTAA 57.876 29.630 0.00 0.00 0.00 2.41
66 67 9.638239 ATTCATTTTTGTTGCTTCGTATGTAAT 57.362 25.926 0.00 0.00 0.00 1.89
67 68 9.469807 TTCATTTTTGTTGCTTCGTATGTAATT 57.530 25.926 0.00 0.00 0.00 1.40
68 69 9.469807 TCATTTTTGTTGCTTCGTATGTAATTT 57.530 25.926 0.00 0.00 0.00 1.82
71 72 9.731819 TTTTTGTTGCTTCGTATGTAATTTACA 57.268 25.926 11.47 11.47 43.80 2.41
73 74 9.900710 TTTGTTGCTTCGTATGTAATTTACATT 57.099 25.926 23.26 10.65 46.69 2.71
111 112 8.857694 AAAAGACCTATATTTCAAAACGGAGA 57.142 30.769 0.00 0.00 0.00 3.71
112 113 8.494016 AAAGACCTATATTTCAAAACGGAGAG 57.506 34.615 0.00 0.00 0.00 3.20
113 114 7.419711 AGACCTATATTTCAAAACGGAGAGA 57.580 36.000 0.00 0.00 0.00 3.10
114 115 7.493367 AGACCTATATTTCAAAACGGAGAGAG 58.507 38.462 0.00 0.00 0.00 3.20
115 116 7.124448 AGACCTATATTTCAAAACGGAGAGAGT 59.876 37.037 0.00 0.00 0.00 3.24
116 117 8.302515 ACCTATATTTCAAAACGGAGAGAGTA 57.697 34.615 0.00 0.00 0.00 2.59
117 118 8.925338 ACCTATATTTCAAAACGGAGAGAGTAT 58.075 33.333 0.00 0.00 0.00 2.12
118 119 9.765795 CCTATATTTCAAAACGGAGAGAGTATT 57.234 33.333 0.00 0.00 0.00 1.89
121 122 9.892130 ATATTTCAAAACGGAGAGAGTATTTCT 57.108 29.630 0.00 0.00 39.43 2.52
136 137 7.435068 GAGTATTTCTCTTTGTTGGTTAGCA 57.565 36.000 0.00 0.00 39.86 3.49
137 138 7.817418 AGTATTTCTCTTTGTTGGTTAGCAA 57.183 32.000 0.00 0.00 0.00 3.91
138 139 8.409358 AGTATTTCTCTTTGTTGGTTAGCAAT 57.591 30.769 0.00 0.00 0.00 3.56
139 140 9.515226 AGTATTTCTCTTTGTTGGTTAGCAATA 57.485 29.630 0.00 0.00 0.00 1.90
140 141 9.774742 GTATTTCTCTTTGTTGGTTAGCAATAG 57.225 33.333 0.00 0.00 0.00 1.73
141 142 6.817765 TTCTCTTTGTTGGTTAGCAATAGG 57.182 37.500 0.00 0.00 0.00 2.57
142 143 6.121776 TCTCTTTGTTGGTTAGCAATAGGA 57.878 37.500 0.00 0.25 0.00 2.94
143 144 6.539173 TCTCTTTGTTGGTTAGCAATAGGAA 58.461 36.000 0.00 0.00 0.00 3.36
144 145 7.001674 TCTCTTTGTTGGTTAGCAATAGGAAA 58.998 34.615 0.00 0.00 0.00 3.13
145 146 6.977213 TCTTTGTTGGTTAGCAATAGGAAAC 58.023 36.000 0.00 0.00 0.00 2.78
146 147 6.547880 TCTTTGTTGGTTAGCAATAGGAAACA 59.452 34.615 0.00 0.00 0.00 2.83
147 148 6.716934 TTGTTGGTTAGCAATAGGAAACAA 57.283 33.333 0.00 0.00 34.80 2.83
148 149 6.716934 TGTTGGTTAGCAATAGGAAACAAA 57.283 33.333 0.00 0.00 31.89 2.83
149 150 7.296628 TGTTGGTTAGCAATAGGAAACAAAT 57.703 32.000 0.00 0.00 31.89 2.32
150 151 8.410673 TGTTGGTTAGCAATAGGAAACAAATA 57.589 30.769 0.00 0.00 31.89 1.40
151 152 8.301002 TGTTGGTTAGCAATAGGAAACAAATAC 58.699 33.333 0.00 0.00 31.89 1.89
152 153 8.520351 GTTGGTTAGCAATAGGAAACAAATACT 58.480 33.333 0.00 0.00 31.89 2.12
153 154 8.050778 TGGTTAGCAATAGGAAACAAATACTG 57.949 34.615 0.00 0.00 0.00 2.74
154 155 7.668052 TGGTTAGCAATAGGAAACAAATACTGT 59.332 33.333 0.00 0.00 41.27 3.55
155 156 9.169592 GGTTAGCAATAGGAAACAAATACTGTA 57.830 33.333 0.00 0.00 37.23 2.74
159 160 9.686683 AGCAATAGGAAACAAATACTGTAATCT 57.313 29.630 0.00 0.00 37.23 2.40
190 191 8.792830 TTCTTTAGGATGATTTCAGTACTTGG 57.207 34.615 0.00 0.00 0.00 3.61
191 192 7.918076 TCTTTAGGATGATTTCAGTACTTGGT 58.082 34.615 0.00 0.00 0.00 3.67
192 193 8.383175 TCTTTAGGATGATTTCAGTACTTGGTT 58.617 33.333 0.00 0.00 0.00 3.67
193 194 8.934023 TTTAGGATGATTTCAGTACTTGGTTT 57.066 30.769 0.00 0.00 0.00 3.27
194 195 8.934023 TTAGGATGATTTCAGTACTTGGTTTT 57.066 30.769 0.00 0.00 0.00 2.43
195 196 7.839680 AGGATGATTTCAGTACTTGGTTTTT 57.160 32.000 0.00 0.00 0.00 1.94
196 197 8.934023 AGGATGATTTCAGTACTTGGTTTTTA 57.066 30.769 0.00 0.00 0.00 1.52
197 198 9.533831 AGGATGATTTCAGTACTTGGTTTTTAT 57.466 29.630 0.00 0.00 0.00 1.40
200 201 9.840427 ATGATTTCAGTACTTGGTTTTTATTCG 57.160 29.630 0.00 0.00 0.00 3.34
201 202 8.293867 TGATTTCAGTACTTGGTTTTTATTCGG 58.706 33.333 0.00 0.00 0.00 4.30
202 203 7.804843 TTTCAGTACTTGGTTTTTATTCGGA 57.195 32.000 0.00 0.00 0.00 4.55
203 204 7.989416 TTCAGTACTTGGTTTTTATTCGGAT 57.011 32.000 0.00 0.00 0.00 4.18
204 205 7.605410 TCAGTACTTGGTTTTTATTCGGATC 57.395 36.000 0.00 0.00 0.00 3.36
205 206 6.311935 TCAGTACTTGGTTTTTATTCGGATCG 59.688 38.462 0.00 0.00 0.00 3.69
206 207 6.311935 CAGTACTTGGTTTTTATTCGGATCGA 59.688 38.462 0.00 0.00 0.00 3.59
207 208 7.011109 CAGTACTTGGTTTTTATTCGGATCGAT 59.989 37.037 0.00 0.00 35.23 3.59
208 209 6.119144 ACTTGGTTTTTATTCGGATCGATG 57.881 37.500 0.54 0.00 35.23 3.84
209 210 5.878116 ACTTGGTTTTTATTCGGATCGATGA 59.122 36.000 0.54 0.00 35.23 2.92
210 211 5.984233 TGGTTTTTATTCGGATCGATGAG 57.016 39.130 0.54 0.00 35.23 2.90
211 212 5.424757 TGGTTTTTATTCGGATCGATGAGT 58.575 37.500 0.54 0.00 35.23 3.41
212 213 6.575267 TGGTTTTTATTCGGATCGATGAGTA 58.425 36.000 0.54 0.00 35.23 2.59
213 214 6.477688 TGGTTTTTATTCGGATCGATGAGTAC 59.522 38.462 0.54 0.00 35.23 2.73
214 215 6.700520 GGTTTTTATTCGGATCGATGAGTACT 59.299 38.462 0.54 0.00 35.23 2.73
215 216 7.864379 GGTTTTTATTCGGATCGATGAGTACTA 59.136 37.037 0.54 0.00 35.23 1.82
216 217 9.241317 GTTTTTATTCGGATCGATGAGTACTAA 57.759 33.333 0.54 0.00 35.23 2.24
217 218 9.976511 TTTTTATTCGGATCGATGAGTACTAAT 57.023 29.630 0.54 0.00 35.23 1.73
218 219 9.976511 TTTTATTCGGATCGATGAGTACTAATT 57.023 29.630 0.54 0.00 35.23 1.40
222 223 7.683437 TCGGATCGATGAGTACTAATTATGT 57.317 36.000 0.54 0.00 0.00 2.29
223 224 7.527457 TCGGATCGATGAGTACTAATTATGTG 58.473 38.462 0.54 0.00 0.00 3.21
224 225 6.251589 CGGATCGATGAGTACTAATTATGTGC 59.748 42.308 0.54 0.00 0.00 4.57
225 226 6.531948 GGATCGATGAGTACTAATTATGTGCC 59.468 42.308 0.54 0.00 0.00 5.01
226 227 6.399639 TCGATGAGTACTAATTATGTGCCA 57.600 37.500 0.00 0.00 0.00 4.92
227 228 6.993079 TCGATGAGTACTAATTATGTGCCAT 58.007 36.000 0.00 0.00 0.00 4.40
228 229 7.441836 TCGATGAGTACTAATTATGTGCCATT 58.558 34.615 0.00 0.00 0.00 3.16
229 230 7.384932 TCGATGAGTACTAATTATGTGCCATTG 59.615 37.037 0.00 0.00 0.00 2.82
230 231 7.384932 CGATGAGTACTAATTATGTGCCATTGA 59.615 37.037 0.00 0.00 0.00 2.57
231 232 7.786178 TGAGTACTAATTATGTGCCATTGAC 57.214 36.000 0.00 0.00 0.00 3.18
232 233 7.564793 TGAGTACTAATTATGTGCCATTGACT 58.435 34.615 0.00 0.00 0.00 3.41
233 234 8.046708 TGAGTACTAATTATGTGCCATTGACTT 58.953 33.333 0.00 0.00 0.00 3.01
234 235 9.542462 GAGTACTAATTATGTGCCATTGACTTA 57.458 33.333 0.00 0.00 0.00 2.24
235 236 9.547753 AGTACTAATTATGTGCCATTGACTTAG 57.452 33.333 0.00 0.00 0.00 2.18
236 237 9.326413 GTACTAATTATGTGCCATTGACTTAGT 57.674 33.333 0.00 0.00 33.09 2.24
237 238 8.807948 ACTAATTATGTGCCATTGACTTAGTT 57.192 30.769 0.00 0.00 0.00 2.24
238 239 9.243105 ACTAATTATGTGCCATTGACTTAGTTT 57.757 29.630 0.00 0.00 0.00 2.66
239 240 9.722056 CTAATTATGTGCCATTGACTTAGTTTC 57.278 33.333 0.00 0.00 0.00 2.78
240 241 6.509418 TTATGTGCCATTGACTTAGTTTCC 57.491 37.500 0.00 0.00 0.00 3.13
241 242 3.826524 TGTGCCATTGACTTAGTTTCCA 58.173 40.909 0.00 0.00 0.00 3.53
242 243 4.211125 TGTGCCATTGACTTAGTTTCCAA 58.789 39.130 0.00 0.00 0.00 3.53
243 244 4.646945 TGTGCCATTGACTTAGTTTCCAAA 59.353 37.500 0.00 0.00 0.00 3.28
244 245 5.221224 TGTGCCATTGACTTAGTTTCCAAAG 60.221 40.000 0.00 0.00 0.00 2.77
245 246 5.009610 GTGCCATTGACTTAGTTTCCAAAGA 59.990 40.000 0.00 0.00 0.00 2.52
246 247 5.596361 TGCCATTGACTTAGTTTCCAAAGAA 59.404 36.000 0.00 0.00 0.00 2.52
247 248 6.097554 TGCCATTGACTTAGTTTCCAAAGAAA 59.902 34.615 0.00 0.00 39.70 2.52
248 249 6.983890 GCCATTGACTTAGTTTCCAAAGAAAA 59.016 34.615 0.00 0.00 43.48 2.29
249 250 7.494298 GCCATTGACTTAGTTTCCAAAGAAAAA 59.506 33.333 0.00 0.00 43.48 1.94
307 308 8.833231 TTTTGAAAAGTAAAACATGTTGGTCA 57.167 26.923 12.82 5.56 0.00 4.02
308 309 8.472683 TTTGAAAAGTAAAACATGTTGGTCAG 57.527 30.769 12.82 0.00 0.00 3.51
309 310 7.397892 TGAAAAGTAAAACATGTTGGTCAGA 57.602 32.000 12.82 0.00 0.00 3.27
310 311 7.831753 TGAAAAGTAAAACATGTTGGTCAGAA 58.168 30.769 12.82 0.00 0.00 3.02
311 312 8.307483 TGAAAAGTAAAACATGTTGGTCAGAAA 58.693 29.630 12.82 0.00 0.00 2.52
312 313 9.145865 GAAAAGTAAAACATGTTGGTCAGAAAA 57.854 29.630 12.82 0.00 0.00 2.29
313 314 8.702163 AAAGTAAAACATGTTGGTCAGAAAAG 57.298 30.769 12.82 0.00 0.00 2.27
314 315 7.639113 AGTAAAACATGTTGGTCAGAAAAGA 57.361 32.000 12.82 0.00 0.00 2.52
315 316 8.062065 AGTAAAACATGTTGGTCAGAAAAGAA 57.938 30.769 12.82 0.00 0.00 2.52
316 317 8.190784 AGTAAAACATGTTGGTCAGAAAAGAAG 58.809 33.333 12.82 0.00 0.00 2.85
317 318 5.520376 AACATGTTGGTCAGAAAAGAAGG 57.480 39.130 11.07 0.00 0.00 3.46
318 319 4.536765 ACATGTTGGTCAGAAAAGAAGGT 58.463 39.130 0.00 0.00 0.00 3.50
319 320 4.956075 ACATGTTGGTCAGAAAAGAAGGTT 59.044 37.500 0.00 0.00 0.00 3.50
320 321 6.126409 ACATGTTGGTCAGAAAAGAAGGTTA 58.874 36.000 0.00 0.00 0.00 2.85
321 322 6.263168 ACATGTTGGTCAGAAAAGAAGGTTAG 59.737 38.462 0.00 0.00 0.00 2.34
322 323 5.996644 TGTTGGTCAGAAAAGAAGGTTAGA 58.003 37.500 0.00 0.00 0.00 2.10
323 324 6.055588 TGTTGGTCAGAAAAGAAGGTTAGAG 58.944 40.000 0.00 0.00 0.00 2.43
324 325 4.642429 TGGTCAGAAAAGAAGGTTAGAGC 58.358 43.478 0.00 0.00 0.00 4.09
325 326 4.348168 TGGTCAGAAAAGAAGGTTAGAGCT 59.652 41.667 0.00 0.00 0.00 4.09
326 327 5.542635 TGGTCAGAAAAGAAGGTTAGAGCTA 59.457 40.000 0.00 0.00 0.00 3.32
327 328 5.870433 GGTCAGAAAAGAAGGTTAGAGCTAC 59.130 44.000 0.00 0.00 0.00 3.58
328 329 6.295405 GGTCAGAAAAGAAGGTTAGAGCTACT 60.295 42.308 0.00 0.00 0.00 2.57
329 330 7.093858 GGTCAGAAAAGAAGGTTAGAGCTACTA 60.094 40.741 0.00 0.00 0.00 1.82
330 331 8.471609 GTCAGAAAAGAAGGTTAGAGCTACTAT 58.528 37.037 0.00 0.00 0.00 2.12
331 332 8.688151 TCAGAAAAGAAGGTTAGAGCTACTATC 58.312 37.037 0.00 0.00 0.00 2.08
332 333 8.691797 CAGAAAAGAAGGTTAGAGCTACTATCT 58.308 37.037 0.00 0.00 0.00 1.98
333 334 8.909923 AGAAAAGAAGGTTAGAGCTACTATCTC 58.090 37.037 0.00 0.00 0.00 2.75
334 335 7.591421 AAAGAAGGTTAGAGCTACTATCTCC 57.409 40.000 0.00 0.00 0.00 3.71
335 336 5.310451 AGAAGGTTAGAGCTACTATCTCCG 58.690 45.833 0.00 0.00 0.00 4.63
336 337 4.710313 AGGTTAGAGCTACTATCTCCGT 57.290 45.455 0.00 0.00 0.00 4.69
337 338 4.644498 AGGTTAGAGCTACTATCTCCGTC 58.356 47.826 0.00 0.00 0.00 4.79
338 339 3.752747 GGTTAGAGCTACTATCTCCGTCC 59.247 52.174 0.00 0.00 0.00 4.79
339 340 4.387598 GTTAGAGCTACTATCTCCGTCCA 58.612 47.826 0.00 0.00 0.00 4.02
340 341 3.579534 AGAGCTACTATCTCCGTCCAA 57.420 47.619 0.00 0.00 0.00 3.53
341 342 3.482436 AGAGCTACTATCTCCGTCCAAG 58.518 50.000 0.00 0.00 0.00 3.61
342 343 3.117813 AGAGCTACTATCTCCGTCCAAGT 60.118 47.826 0.00 0.00 0.00 3.16
343 344 3.633065 GAGCTACTATCTCCGTCCAAGTT 59.367 47.826 0.00 0.00 0.00 2.66
344 345 4.024670 AGCTACTATCTCCGTCCAAGTTT 58.975 43.478 0.00 0.00 0.00 2.66
345 346 5.198965 AGCTACTATCTCCGTCCAAGTTTA 58.801 41.667 0.00 0.00 0.00 2.01
346 347 5.834204 AGCTACTATCTCCGTCCAAGTTTAT 59.166 40.000 0.00 0.00 0.00 1.40
347 348 6.324254 AGCTACTATCTCCGTCCAAGTTTATT 59.676 38.462 0.00 0.00 0.00 1.40
348 349 7.504911 AGCTACTATCTCCGTCCAAGTTTATTA 59.495 37.037 0.00 0.00 0.00 0.98
349 350 7.808856 GCTACTATCTCCGTCCAAGTTTATTAG 59.191 40.741 0.00 0.00 0.00 1.73
350 351 7.052142 ACTATCTCCGTCCAAGTTTATTAGG 57.948 40.000 0.00 0.00 0.00 2.69
351 352 4.133013 TCTCCGTCCAAGTTTATTAGGC 57.867 45.455 0.00 0.00 0.00 3.93
352 353 3.118519 TCTCCGTCCAAGTTTATTAGGCC 60.119 47.826 0.00 0.00 0.00 5.19
353 354 2.841881 TCCGTCCAAGTTTATTAGGCCT 59.158 45.455 11.78 11.78 0.00 5.19
354 355 3.118519 TCCGTCCAAGTTTATTAGGCCTC 60.119 47.826 9.68 0.00 0.00 4.70
355 356 3.370103 CCGTCCAAGTTTATTAGGCCTCA 60.370 47.826 9.68 0.00 0.00 3.86
356 357 4.451900 CGTCCAAGTTTATTAGGCCTCAT 58.548 43.478 9.68 6.60 0.00 2.90
357 358 5.454187 CCGTCCAAGTTTATTAGGCCTCATA 60.454 44.000 9.68 5.25 0.00 2.15
358 359 6.231211 CGTCCAAGTTTATTAGGCCTCATAT 58.769 40.000 9.68 4.11 0.00 1.78
359 360 6.710744 CGTCCAAGTTTATTAGGCCTCATATT 59.289 38.462 9.68 0.00 0.00 1.28
360 361 7.876068 CGTCCAAGTTTATTAGGCCTCATATTA 59.124 37.037 9.68 0.00 0.00 0.98
361 362 9.740710 GTCCAAGTTTATTAGGCCTCATATTAT 57.259 33.333 9.68 0.00 0.00 1.28
370 371 8.829373 ATTAGGCCTCATATTATTTTGGATCC 57.171 34.615 9.68 4.20 0.00 3.36
371 372 6.218195 AGGCCTCATATTATTTTGGATCCA 57.782 37.500 11.44 11.44 0.00 3.41
372 373 6.623329 AGGCCTCATATTATTTTGGATCCAA 58.377 36.000 23.63 23.63 0.00 3.53
373 374 6.723052 AGGCCTCATATTATTTTGGATCCAAG 59.277 38.462 25.69 12.74 37.24 3.61
374 375 6.494835 GGCCTCATATTATTTTGGATCCAAGT 59.505 38.462 25.69 20.25 37.24 3.16
375 376 7.015584 GGCCTCATATTATTTTGGATCCAAGTT 59.984 37.037 25.69 19.06 37.24 2.66
376 377 8.424133 GCCTCATATTATTTTGGATCCAAGTTT 58.576 33.333 25.69 16.80 37.24 2.66
377 378 9.754382 CCTCATATTATTTTGGATCCAAGTTTG 57.246 33.333 25.69 16.74 37.24 2.93
380 381 9.533253 CATATTATTTTGGATCCAAGTTTGACC 57.467 33.333 25.69 0.00 37.24 4.02
381 382 6.985653 TTATTTTGGATCCAAGTTTGACCA 57.014 33.333 25.69 7.19 37.24 4.02
382 383 7.552050 TTATTTTGGATCCAAGTTTGACCAT 57.448 32.000 25.69 11.76 37.24 3.55
383 384 4.870123 TTTGGATCCAAGTTTGACCATG 57.130 40.909 25.69 0.00 37.24 3.66
384 385 3.524095 TGGATCCAAGTTTGACCATGT 57.476 42.857 13.46 0.00 0.00 3.21
385 386 4.649267 TGGATCCAAGTTTGACCATGTA 57.351 40.909 13.46 0.00 0.00 2.29
386 387 5.191727 TGGATCCAAGTTTGACCATGTAT 57.808 39.130 13.46 0.00 0.00 2.29
387 388 5.579047 TGGATCCAAGTTTGACCATGTATT 58.421 37.500 13.46 0.00 0.00 1.89
388 389 6.015918 TGGATCCAAGTTTGACCATGTATTT 58.984 36.000 13.46 0.00 0.00 1.40
389 390 7.178573 TGGATCCAAGTTTGACCATGTATTTA 58.821 34.615 13.46 0.00 0.00 1.40
390 391 7.671819 TGGATCCAAGTTTGACCATGTATTTAA 59.328 33.333 13.46 0.00 0.00 1.52
391 392 7.973944 GGATCCAAGTTTGACCATGTATTTAAC 59.026 37.037 6.95 0.00 0.00 2.01
392 393 8.650143 ATCCAAGTTTGACCATGTATTTAACT 57.350 30.769 0.00 0.00 0.00 2.24
393 394 9.747898 ATCCAAGTTTGACCATGTATTTAACTA 57.252 29.630 0.00 0.00 0.00 2.24
394 395 9.575868 TCCAAGTTTGACCATGTATTTAACTAA 57.424 29.630 0.00 0.00 0.00 2.24
540 541 9.511144 ACTTTAGTTTAAAATGAAAACCAGACG 57.489 29.630 0.00 0.00 37.51 4.18
541 542 9.724839 CTTTAGTTTAAAATGAAAACCAGACGA 57.275 29.630 0.00 0.00 37.51 4.20
543 544 9.724839 TTAGTTTAAAATGAAAACCAGACGAAG 57.275 29.630 0.00 0.00 37.51 3.79
544 545 7.200455 AGTTTAAAATGAAAACCAGACGAAGG 58.800 34.615 0.00 0.00 37.51 3.46
545 546 4.584327 AAAATGAAAACCAGACGAAGGG 57.416 40.909 0.00 0.00 0.00 3.95
546 547 3.502123 AATGAAAACCAGACGAAGGGA 57.498 42.857 0.00 0.00 0.00 4.20
547 548 2.543777 TGAAAACCAGACGAAGGGAG 57.456 50.000 0.00 0.00 0.00 4.30
548 549 1.766496 TGAAAACCAGACGAAGGGAGT 59.234 47.619 0.00 0.00 0.00 3.85
549 550 2.967201 TGAAAACCAGACGAAGGGAGTA 59.033 45.455 0.00 0.00 0.00 2.59
550 551 3.243975 TGAAAACCAGACGAAGGGAGTAC 60.244 47.826 0.00 0.00 0.00 2.73
551 552 2.305858 AACCAGACGAAGGGAGTACT 57.694 50.000 0.00 0.00 0.00 2.73
552 553 2.305858 ACCAGACGAAGGGAGTACTT 57.694 50.000 0.00 0.00 0.00 2.24
553 554 3.446442 ACCAGACGAAGGGAGTACTTA 57.554 47.619 0.00 0.00 0.00 2.24
554 555 3.978610 ACCAGACGAAGGGAGTACTTAT 58.021 45.455 0.00 0.00 0.00 1.73
555 556 4.351127 ACCAGACGAAGGGAGTACTTATT 58.649 43.478 0.00 0.00 0.00 1.40
556 557 4.776308 ACCAGACGAAGGGAGTACTTATTT 59.224 41.667 0.00 0.00 0.00 1.40
557 558 5.954150 ACCAGACGAAGGGAGTACTTATTTA 59.046 40.000 0.00 0.00 0.00 1.40
558 559 6.127507 ACCAGACGAAGGGAGTACTTATTTAC 60.128 42.308 0.00 0.00 0.00 2.01
559 560 5.970023 CAGACGAAGGGAGTACTTATTTACG 59.030 44.000 0.00 2.56 0.00 3.18
560 561 4.676546 ACGAAGGGAGTACTTATTTACGC 58.323 43.478 0.00 0.00 0.00 4.42
561 562 4.047142 CGAAGGGAGTACTTATTTACGCC 58.953 47.826 0.00 0.00 40.28 5.68
564 565 2.130395 GGAGTACTTATTTACGCCCGC 58.870 52.381 0.00 0.00 36.26 6.13
565 566 1.783140 GAGTACTTATTTACGCCCGCG 59.217 52.381 7.69 7.69 46.03 6.46
566 567 0.230515 GTACTTATTTACGCCCGCGC 59.769 55.000 9.37 0.00 44.19 6.86
567 568 0.102844 TACTTATTTACGCCCGCGCT 59.897 50.000 9.37 0.00 44.19 5.92
568 569 0.741927 ACTTATTTACGCCCGCGCTT 60.742 50.000 9.37 0.00 44.19 4.68
569 570 0.042448 CTTATTTACGCCCGCGCTTC 60.042 55.000 9.37 0.00 44.19 3.86
570 571 1.430707 TTATTTACGCCCGCGCTTCC 61.431 55.000 9.37 0.00 44.19 3.46
571 572 2.575125 TATTTACGCCCGCGCTTCCA 62.575 55.000 9.37 0.00 44.19 3.53
572 573 3.833649 TATTTACGCCCGCGCTTCCAT 62.834 52.381 9.37 0.00 44.19 3.41
573 574 4.884257 TACGCCCGCGCTTCCATC 62.884 66.667 9.37 0.00 44.19 3.51
576 577 3.577313 GCCCGCGCTTCCATCTTC 61.577 66.667 5.56 0.00 0.00 2.87
577 578 2.125147 CCCGCGCTTCCATCTTCA 60.125 61.111 5.56 0.00 0.00 3.02
578 579 1.745115 CCCGCGCTTCCATCTTCAA 60.745 57.895 5.56 0.00 0.00 2.69
579 580 1.305219 CCCGCGCTTCCATCTTCAAA 61.305 55.000 5.56 0.00 0.00 2.69
580 581 0.521291 CCGCGCTTCCATCTTCAAAA 59.479 50.000 5.56 0.00 0.00 2.44
581 582 1.133025 CCGCGCTTCCATCTTCAAAAT 59.867 47.619 5.56 0.00 0.00 1.82
582 583 2.354510 CCGCGCTTCCATCTTCAAAATA 59.645 45.455 5.56 0.00 0.00 1.40
583 584 3.181501 CCGCGCTTCCATCTTCAAAATAA 60.182 43.478 5.56 0.00 0.00 1.40
584 585 4.411327 CGCGCTTCCATCTTCAAAATAAA 58.589 39.130 5.56 0.00 0.00 1.40
585 586 4.856487 CGCGCTTCCATCTTCAAAATAAAA 59.144 37.500 5.56 0.00 0.00 1.52
586 587 5.344665 CGCGCTTCCATCTTCAAAATAAAAA 59.655 36.000 5.56 0.00 0.00 1.94
620 621 8.635765 AAAATTAAACTACTCTGGCTTCATCA 57.364 30.769 0.00 0.00 0.00 3.07
621 622 8.635765 AAATTAAACTACTCTGGCTTCATCAA 57.364 30.769 0.00 0.00 0.00 2.57
622 623 8.635765 AATTAAACTACTCTGGCTTCATCAAA 57.364 30.769 0.00 0.00 0.00 2.69
623 624 5.948992 AAACTACTCTGGCTTCATCAAAC 57.051 39.130 0.00 0.00 0.00 2.93
624 625 4.623932 ACTACTCTGGCTTCATCAAACA 57.376 40.909 0.00 0.00 0.00 2.83
625 626 5.171339 ACTACTCTGGCTTCATCAAACAT 57.829 39.130 0.00 0.00 0.00 2.71
626 627 5.564550 ACTACTCTGGCTTCATCAAACATT 58.435 37.500 0.00 0.00 0.00 2.71
627 628 5.645497 ACTACTCTGGCTTCATCAAACATTC 59.355 40.000 0.00 0.00 0.00 2.67
628 629 3.760684 ACTCTGGCTTCATCAAACATTCC 59.239 43.478 0.00 0.00 0.00 3.01
629 630 2.749076 TCTGGCTTCATCAAACATTCCG 59.251 45.455 0.00 0.00 0.00 4.30
630 631 2.749076 CTGGCTTCATCAAACATTCCGA 59.251 45.455 0.00 0.00 0.00 4.55
631 632 2.749076 TGGCTTCATCAAACATTCCGAG 59.251 45.455 0.00 0.00 0.00 4.63
632 633 2.098117 GGCTTCATCAAACATTCCGAGG 59.902 50.000 0.00 0.00 0.00 4.63
633 634 2.098117 GCTTCATCAAACATTCCGAGGG 59.902 50.000 0.00 0.00 0.00 4.30
634 635 1.750193 TCATCAAACATTCCGAGGGC 58.250 50.000 0.00 0.00 0.00 5.19
635 636 0.740737 CATCAAACATTCCGAGGGCC 59.259 55.000 0.00 0.00 0.00 5.80
636 637 0.331278 ATCAAACATTCCGAGGGCCA 59.669 50.000 6.18 0.00 0.00 5.36
637 638 0.322456 TCAAACATTCCGAGGGCCAG 60.322 55.000 6.18 0.00 0.00 4.85
638 639 1.678970 AAACATTCCGAGGGCCAGC 60.679 57.895 6.18 0.00 0.00 4.85
639 640 3.976701 AACATTCCGAGGGCCAGCG 62.977 63.158 6.18 9.30 0.00 5.18
656 657 4.347453 GGGTTTGCTGCGCCAGTG 62.347 66.667 4.18 0.00 33.43 3.66
657 658 3.595758 GGTTTGCTGCGCCAGTGT 61.596 61.111 4.18 0.00 33.43 3.55
658 659 2.353839 GTTTGCTGCGCCAGTGTG 60.354 61.111 4.18 0.00 33.43 3.82
659 660 2.515757 TTTGCTGCGCCAGTGTGA 60.516 55.556 4.18 0.00 33.43 3.58
660 661 1.898094 TTTGCTGCGCCAGTGTGAT 60.898 52.632 4.18 0.00 33.43 3.06
661 662 1.454572 TTTGCTGCGCCAGTGTGATT 61.455 50.000 4.18 0.00 33.43 2.57
662 663 1.454572 TTGCTGCGCCAGTGTGATTT 61.455 50.000 4.18 0.00 33.43 2.17
663 664 0.605050 TGCTGCGCCAGTGTGATTTA 60.605 50.000 4.18 0.00 33.43 1.40
664 665 0.734889 GCTGCGCCAGTGTGATTTAT 59.265 50.000 4.18 0.00 33.43 1.40
665 666 1.532505 GCTGCGCCAGTGTGATTTATG 60.533 52.381 4.18 0.00 33.43 1.90
666 667 1.064505 CTGCGCCAGTGTGATTTATGG 59.935 52.381 4.18 0.00 35.84 2.74
667 668 1.339535 TGCGCCAGTGTGATTTATGGA 60.340 47.619 4.18 0.00 34.60 3.41
668 669 1.742831 GCGCCAGTGTGATTTATGGAA 59.257 47.619 0.00 0.00 34.60 3.53
669 670 2.358898 GCGCCAGTGTGATTTATGGAAT 59.641 45.455 0.00 0.00 34.60 3.01
670 671 3.548818 GCGCCAGTGTGATTTATGGAATC 60.549 47.826 0.00 0.00 43.67 2.52
671 672 3.303329 CGCCAGTGTGATTTATGGAATCG 60.303 47.826 0.00 0.00 45.85 3.34
672 673 3.003689 GCCAGTGTGATTTATGGAATCGG 59.996 47.826 0.00 0.00 45.85 4.18
673 674 3.565482 CCAGTGTGATTTATGGAATCGGG 59.435 47.826 0.00 0.00 45.85 5.14
674 675 3.565482 CAGTGTGATTTATGGAATCGGGG 59.435 47.826 0.00 0.00 45.85 5.73
675 676 3.202151 AGTGTGATTTATGGAATCGGGGT 59.798 43.478 0.00 0.00 45.85 4.95
676 677 3.315191 GTGTGATTTATGGAATCGGGGTG 59.685 47.826 0.00 0.00 45.85 4.61
677 678 3.053991 TGTGATTTATGGAATCGGGGTGT 60.054 43.478 0.00 0.00 45.85 4.16
678 679 3.951680 GTGATTTATGGAATCGGGGTGTT 59.048 43.478 0.00 0.00 45.85 3.32
679 680 4.036380 GTGATTTATGGAATCGGGGTGTTC 59.964 45.833 0.00 0.00 45.85 3.18
680 681 2.721425 TTATGGAATCGGGGTGTTCC 57.279 50.000 0.00 0.00 43.33 3.62
682 683 2.393416 TGGAATCGGGGTGTTCCAT 58.607 52.632 2.88 0.00 46.59 3.41
683 684 0.701731 TGGAATCGGGGTGTTCCATT 59.298 50.000 2.88 0.00 46.59 3.16
684 685 1.076350 TGGAATCGGGGTGTTCCATTT 59.924 47.619 2.88 0.00 46.59 2.32
685 686 1.749063 GGAATCGGGGTGTTCCATTTC 59.251 52.381 0.00 0.00 42.72 2.17
686 687 2.442413 GAATCGGGGTGTTCCATTTCA 58.558 47.619 0.00 0.00 37.22 2.69
687 688 2.595750 ATCGGGGTGTTCCATTTCAA 57.404 45.000 0.00 0.00 37.22 2.69
688 689 2.366640 TCGGGGTGTTCCATTTCAAA 57.633 45.000 0.00 0.00 37.22 2.69
689 690 2.667470 TCGGGGTGTTCCATTTCAAAA 58.333 42.857 0.00 0.00 37.22 2.44
1006 1007 1.179152 TAGCTCGTCGTTGATGGGAA 58.821 50.000 0.00 0.00 0.00 3.97
1029 1030 4.045761 CGCAAAAGCAAACGCGGC 62.046 61.111 12.47 3.95 43.84 6.53
1128 1147 3.777925 CGTTCTGCGGCGGACTTG 61.778 66.667 11.82 0.20 36.85 3.16
1130 1149 2.664851 TTCTGCGGCGGACTTGTG 60.665 61.111 11.82 0.00 0.00 3.33
1151 1173 2.509336 CTACTGCCGAACCTGCCG 60.509 66.667 0.00 0.00 0.00 5.69
1212 1240 3.948719 GACACCACCTCCGCCCAA 61.949 66.667 0.00 0.00 0.00 4.12
1329 1369 0.107703 CAGCAGAAAGGGCGTGGATA 60.108 55.000 0.00 0.00 36.08 2.59
1330 1370 0.179000 AGCAGAAAGGGCGTGGATAG 59.821 55.000 0.00 0.00 36.08 2.08
1331 1371 0.178068 GCAGAAAGGGCGTGGATAGA 59.822 55.000 0.00 0.00 0.00 1.98
1332 1372 1.406887 GCAGAAAGGGCGTGGATAGAA 60.407 52.381 0.00 0.00 0.00 2.10
1333 1373 2.939640 GCAGAAAGGGCGTGGATAGAAA 60.940 50.000 0.00 0.00 0.00 2.52
1334 1374 3.545703 CAGAAAGGGCGTGGATAGAAAT 58.454 45.455 0.00 0.00 0.00 2.17
1335 1375 3.561725 CAGAAAGGGCGTGGATAGAAATC 59.438 47.826 0.00 0.00 0.00 2.17
1336 1376 3.456277 AGAAAGGGCGTGGATAGAAATCT 59.544 43.478 0.00 0.00 32.29 2.40
1337 1377 4.654262 AGAAAGGGCGTGGATAGAAATCTA 59.346 41.667 0.00 0.00 32.29 1.98
1338 1378 4.608948 AAGGGCGTGGATAGAAATCTAG 57.391 45.455 0.00 0.00 32.29 2.43
1339 1379 3.577919 AGGGCGTGGATAGAAATCTAGT 58.422 45.455 0.00 0.00 32.29 2.57
1340 1380 3.967987 AGGGCGTGGATAGAAATCTAGTT 59.032 43.478 0.00 0.00 32.29 2.24
1341 1381 4.409247 AGGGCGTGGATAGAAATCTAGTTT 59.591 41.667 0.00 0.00 32.29 2.66
1342 1382 5.601313 AGGGCGTGGATAGAAATCTAGTTTA 59.399 40.000 0.00 0.00 32.29 2.01
1343 1383 6.270231 AGGGCGTGGATAGAAATCTAGTTTAT 59.730 38.462 0.00 0.00 32.29 1.40
1344 1384 6.590677 GGGCGTGGATAGAAATCTAGTTTATC 59.409 42.308 0.00 0.00 32.29 1.75
1345 1385 7.379750 GGCGTGGATAGAAATCTAGTTTATCT 58.620 38.462 0.00 0.00 32.29 1.98
1346 1386 7.873505 GGCGTGGATAGAAATCTAGTTTATCTT 59.126 37.037 0.00 0.00 32.29 2.40
1347 1387 9.262358 GCGTGGATAGAAATCTAGTTTATCTTT 57.738 33.333 0.00 0.00 32.29 2.52
1415 1455 6.213525 AGGGAGGTGGATCTAATCTACTTTT 58.786 40.000 3.87 0.00 40.24 2.27
1430 1470 6.899393 TCTACTTTTTCTGATGGTTGCAAT 57.101 33.333 0.59 0.00 0.00 3.56
1509 1571 1.945387 AGCACGGTGATGATGATGAC 58.055 50.000 13.29 0.00 0.00 3.06
1529 1595 5.122519 TGACACAAATTGTTCACTCAGCTA 58.877 37.500 0.00 0.00 39.17 3.32
1530 1596 5.764686 TGACACAAATTGTTCACTCAGCTAT 59.235 36.000 0.00 0.00 39.17 2.97
1538 1604 5.039920 TGTTCACTCAGCTATTATGCCAT 57.960 39.130 0.00 0.00 0.00 4.40
1567 1637 7.915923 TGAATCGCTATTACTTCTACTCACAAG 59.084 37.037 0.00 0.00 0.00 3.16
1598 1676 1.675641 GCAATGTTCTGCCCTCCGT 60.676 57.895 0.00 0.00 36.25 4.69
2031 2164 4.799564 TTTCTTCCTGTTTGCACACTTT 57.200 36.364 4.37 0.00 0.00 2.66
2032 2165 4.799564 TTCTTCCTGTTTGCACACTTTT 57.200 36.364 4.37 0.00 0.00 2.27
2078 2221 7.836685 CCCTGAGATAAGACCATATAAGAGCTA 59.163 40.741 0.00 0.00 0.00 3.32
2180 2325 9.066892 TCAACAGTTTGAACTAGAGCATAATTT 57.933 29.630 0.00 0.00 38.87 1.82
2333 2502 9.129532 GGTGATTAGGATCTGAAAATGAAGATT 57.870 33.333 0.00 0.00 33.26 2.40
2435 6413 4.787135 TTCTGGCATGGACATGGTTATA 57.213 40.909 13.63 0.00 39.16 0.98
2664 9022 5.007724 CCCATTCTTTTAGGATCTTGCGTAC 59.992 44.000 0.00 0.00 0.00 3.67
2717 9075 8.918202 TCAATTTGTGAAGACTATAAGTGGTT 57.082 30.769 0.00 0.00 31.51 3.67
2783 9141 6.008960 AGGATCTTTTCTTTGCTGAAGTGAT 58.991 36.000 0.00 0.00 36.70 3.06
2793 9151 7.710856 TCTTTGCTGAAGTGATAGAGGGAACT 61.711 42.308 1.31 0.00 39.11 3.01
2857 9215 8.924511 ATCCAATGAAAATGGTAAGTATCGAT 57.075 30.769 2.16 2.16 39.09 3.59
2923 9281 6.333416 TGGATCTTGTCTTTCTATCTGTTCG 58.667 40.000 0.00 0.00 0.00 3.95
2926 9284 6.576662 TCTTGTCTTTCTATCTGTTCGACT 57.423 37.500 0.00 0.00 0.00 4.18
2967 9326 5.261216 TCTGTCCTTTTCCACTCTTGTTTT 58.739 37.500 0.00 0.00 0.00 2.43
3029 9389 3.323775 TGAGAAGTTTTACCCTCACCCT 58.676 45.455 0.00 0.00 31.45 4.34
3149 9522 1.064505 CCAACAAGGCTGATGCATACG 59.935 52.381 0.00 0.00 41.91 3.06
3343 9719 5.255397 AGCTAGGCTGAGATACATCTACT 57.745 43.478 0.00 0.00 37.57 2.57
3409 9785 2.051334 TGTTGGAGTTGTGGTGGAAG 57.949 50.000 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.867403 ACGAAGCAACAAAAATGAATCTACATT 59.133 29.630 0.00 0.00 41.43 2.71
34 35 7.370383 ACGAAGCAACAAAAATGAATCTACAT 58.630 30.769 0.00 0.00 0.00 2.29
35 36 6.734137 ACGAAGCAACAAAAATGAATCTACA 58.266 32.000 0.00 0.00 0.00 2.74
36 37 8.788813 CATACGAAGCAACAAAAATGAATCTAC 58.211 33.333 0.00 0.00 0.00 2.59
37 38 8.511321 ACATACGAAGCAACAAAAATGAATCTA 58.489 29.630 0.00 0.00 0.00 1.98
38 39 7.370383 ACATACGAAGCAACAAAAATGAATCT 58.630 30.769 0.00 0.00 0.00 2.40
39 40 7.566858 ACATACGAAGCAACAAAAATGAATC 57.433 32.000 0.00 0.00 0.00 2.52
40 41 9.638239 ATTACATACGAAGCAACAAAAATGAAT 57.362 25.926 0.00 0.00 0.00 2.57
41 42 9.469807 AATTACATACGAAGCAACAAAAATGAA 57.530 25.926 0.00 0.00 0.00 2.57
42 43 9.469807 AAATTACATACGAAGCAACAAAAATGA 57.530 25.926 0.00 0.00 0.00 2.57
45 46 9.731819 TGTAAATTACATACGAAGCAACAAAAA 57.268 25.926 1.08 0.00 32.89 1.94
46 47 9.900710 ATGTAAATTACATACGAAGCAACAAAA 57.099 25.926 16.22 0.00 46.90 2.44
85 86 9.292195 TCTCCGTTTTGAAATATAGGTCTTTTT 57.708 29.630 0.00 0.00 0.00 1.94
86 87 8.857694 TCTCCGTTTTGAAATATAGGTCTTTT 57.142 30.769 0.00 0.00 0.00 2.27
87 88 8.319146 TCTCTCCGTTTTGAAATATAGGTCTTT 58.681 33.333 0.00 0.00 0.00 2.52
88 89 7.848128 TCTCTCCGTTTTGAAATATAGGTCTT 58.152 34.615 0.00 0.00 0.00 3.01
89 90 7.124448 ACTCTCTCCGTTTTGAAATATAGGTCT 59.876 37.037 0.00 0.00 0.00 3.85
90 91 7.266400 ACTCTCTCCGTTTTGAAATATAGGTC 58.734 38.462 0.00 0.00 0.00 3.85
91 92 7.184067 ACTCTCTCCGTTTTGAAATATAGGT 57.816 36.000 0.00 0.00 0.00 3.08
92 93 9.765795 AATACTCTCTCCGTTTTGAAATATAGG 57.234 33.333 0.00 0.00 0.00 2.57
95 96 9.892130 AGAAATACTCTCTCCGTTTTGAAATAT 57.108 29.630 0.00 0.00 0.00 1.28
96 97 9.367444 GAGAAATACTCTCTCCGTTTTGAAATA 57.633 33.333 0.00 0.00 46.32 1.40
97 98 8.257830 GAGAAATACTCTCTCCGTTTTGAAAT 57.742 34.615 0.00 0.00 46.32 2.17
98 99 7.653767 GAGAAATACTCTCTCCGTTTTGAAA 57.346 36.000 0.00 0.00 46.32 2.69
112 113 7.435068 TGCTAACCAACAAAGAGAAATACTC 57.565 36.000 0.00 0.00 45.22 2.59
113 114 7.817418 TTGCTAACCAACAAAGAGAAATACT 57.183 32.000 0.00 0.00 0.00 2.12
114 115 9.774742 CTATTGCTAACCAACAAAGAGAAATAC 57.225 33.333 0.00 0.00 35.99 1.89
115 116 8.956426 CCTATTGCTAACCAACAAAGAGAAATA 58.044 33.333 0.00 0.00 35.99 1.40
116 117 7.669722 TCCTATTGCTAACCAACAAAGAGAAAT 59.330 33.333 0.00 0.00 35.99 2.17
117 118 7.001674 TCCTATTGCTAACCAACAAAGAGAAA 58.998 34.615 0.00 0.00 35.99 2.52
118 119 6.539173 TCCTATTGCTAACCAACAAAGAGAA 58.461 36.000 0.00 0.00 35.99 2.87
119 120 6.121776 TCCTATTGCTAACCAACAAAGAGA 57.878 37.500 0.00 0.00 35.99 3.10
120 121 6.817765 TTCCTATTGCTAACCAACAAAGAG 57.182 37.500 0.00 0.00 35.99 2.85
121 122 6.547880 TGTTTCCTATTGCTAACCAACAAAGA 59.452 34.615 0.00 0.00 35.99 2.52
122 123 6.744112 TGTTTCCTATTGCTAACCAACAAAG 58.256 36.000 0.00 0.00 35.99 2.77
123 124 6.716934 TGTTTCCTATTGCTAACCAACAAA 57.283 33.333 0.00 0.00 35.99 2.83
124 125 6.716934 TTGTTTCCTATTGCTAACCAACAA 57.283 33.333 0.00 0.00 35.99 2.83
125 126 6.716934 TTTGTTTCCTATTGCTAACCAACA 57.283 33.333 0.00 0.00 35.99 3.33
126 127 8.520351 AGTATTTGTTTCCTATTGCTAACCAAC 58.480 33.333 0.00 0.00 35.99 3.77
127 128 8.519526 CAGTATTTGTTTCCTATTGCTAACCAA 58.480 33.333 0.00 0.00 37.94 3.67
128 129 7.668052 ACAGTATTTGTTTCCTATTGCTAACCA 59.332 33.333 0.00 0.00 36.31 3.67
129 130 8.051901 ACAGTATTTGTTTCCTATTGCTAACC 57.948 34.615 0.00 0.00 36.31 2.85
133 134 9.686683 AGATTACAGTATTTGTTTCCTATTGCT 57.313 29.630 0.00 0.00 41.29 3.91
164 165 9.401058 CCAAGTACTGAAATCATCCTAAAGAAT 57.599 33.333 0.00 0.00 0.00 2.40
165 166 8.383175 ACCAAGTACTGAAATCATCCTAAAGAA 58.617 33.333 0.00 0.00 0.00 2.52
166 167 7.918076 ACCAAGTACTGAAATCATCCTAAAGA 58.082 34.615 0.00 0.00 0.00 2.52
167 168 8.567285 AACCAAGTACTGAAATCATCCTAAAG 57.433 34.615 0.00 0.00 0.00 1.85
168 169 8.934023 AAACCAAGTACTGAAATCATCCTAAA 57.066 30.769 0.00 0.00 0.00 1.85
169 170 8.934023 AAAACCAAGTACTGAAATCATCCTAA 57.066 30.769 0.00 0.00 0.00 2.69
170 171 8.934023 AAAAACCAAGTACTGAAATCATCCTA 57.066 30.769 0.00 0.00 0.00 2.94
171 172 7.839680 AAAAACCAAGTACTGAAATCATCCT 57.160 32.000 0.00 0.00 0.00 3.24
174 175 9.840427 CGAATAAAAACCAAGTACTGAAATCAT 57.160 29.630 0.00 0.00 0.00 2.45
175 176 8.293867 CCGAATAAAAACCAAGTACTGAAATCA 58.706 33.333 0.00 0.00 0.00 2.57
176 177 8.508875 TCCGAATAAAAACCAAGTACTGAAATC 58.491 33.333 0.00 0.00 0.00 2.17
177 178 8.398878 TCCGAATAAAAACCAAGTACTGAAAT 57.601 30.769 0.00 0.00 0.00 2.17
178 179 7.804843 TCCGAATAAAAACCAAGTACTGAAA 57.195 32.000 0.00 0.00 0.00 2.69
179 180 7.148540 CGATCCGAATAAAAACCAAGTACTGAA 60.149 37.037 0.00 0.00 0.00 3.02
180 181 6.311935 CGATCCGAATAAAAACCAAGTACTGA 59.688 38.462 0.00 0.00 0.00 3.41
181 182 6.311935 TCGATCCGAATAAAAACCAAGTACTG 59.688 38.462 0.00 0.00 31.06 2.74
182 183 6.400568 TCGATCCGAATAAAAACCAAGTACT 58.599 36.000 0.00 0.00 31.06 2.73
183 184 6.651755 TCGATCCGAATAAAAACCAAGTAC 57.348 37.500 0.00 0.00 31.06 2.73
184 185 7.042950 TCATCGATCCGAATAAAAACCAAGTA 58.957 34.615 0.00 0.00 39.99 2.24
185 186 5.878116 TCATCGATCCGAATAAAAACCAAGT 59.122 36.000 0.00 0.00 39.99 3.16
186 187 6.037172 ACTCATCGATCCGAATAAAAACCAAG 59.963 38.462 0.00 0.00 39.99 3.61
187 188 5.878116 ACTCATCGATCCGAATAAAAACCAA 59.122 36.000 0.00 0.00 39.99 3.67
188 189 5.424757 ACTCATCGATCCGAATAAAAACCA 58.575 37.500 0.00 0.00 39.99 3.67
189 190 5.986004 ACTCATCGATCCGAATAAAAACC 57.014 39.130 0.00 0.00 39.99 3.27
190 191 7.695869 AGTACTCATCGATCCGAATAAAAAC 57.304 36.000 0.00 0.00 39.99 2.43
191 192 9.976511 ATTAGTACTCATCGATCCGAATAAAAA 57.023 29.630 0.00 0.00 39.99 1.94
192 193 9.976511 AATTAGTACTCATCGATCCGAATAAAA 57.023 29.630 0.00 0.00 39.99 1.52
196 197 8.740906 ACATAATTAGTACTCATCGATCCGAAT 58.259 33.333 0.00 0.00 39.99 3.34
197 198 8.021396 CACATAATTAGTACTCATCGATCCGAA 58.979 37.037 0.00 0.00 39.99 4.30
198 199 7.527457 CACATAATTAGTACTCATCGATCCGA 58.473 38.462 0.00 0.00 41.13 4.55
199 200 6.251589 GCACATAATTAGTACTCATCGATCCG 59.748 42.308 0.00 0.00 0.00 4.18
200 201 6.531948 GGCACATAATTAGTACTCATCGATCC 59.468 42.308 0.00 0.00 0.00 3.36
201 202 7.090808 TGGCACATAATTAGTACTCATCGATC 58.909 38.462 0.00 0.00 0.00 3.69
202 203 6.993079 TGGCACATAATTAGTACTCATCGAT 58.007 36.000 0.00 0.00 0.00 3.59
203 204 6.399639 TGGCACATAATTAGTACTCATCGA 57.600 37.500 0.00 0.00 0.00 3.59
218 219 7.309133 CTTTGGAAACTAAGTCAATGGCACATA 60.309 37.037 0.00 0.00 39.78 2.29
219 220 6.517194 CTTTGGAAACTAAGTCAATGGCACAT 60.517 38.462 0.00 0.00 39.78 3.21
220 221 5.221224 CTTTGGAAACTAAGTCAATGGCACA 60.221 40.000 0.00 0.00 39.67 4.57
221 222 4.846779 TTGGAAACTAAGTCAATGGCAC 57.153 40.909 0.00 0.00 0.00 5.01
222 223 5.136828 TCTTTGGAAACTAAGTCAATGGCA 58.863 37.500 0.00 0.00 42.71 4.92
223 224 5.705609 TCTTTGGAAACTAAGTCAATGGC 57.294 39.130 0.00 0.00 42.71 4.40
224 225 8.940768 TTTTTCTTTGGAAACTAAGTCAATGG 57.059 30.769 0.00 0.00 42.71 3.16
281 282 9.442047 TGACCAACATGTTTTACTTTTCAAAAT 57.558 25.926 8.77 0.00 0.00 1.82
282 283 8.833231 TGACCAACATGTTTTACTTTTCAAAA 57.167 26.923 8.77 0.00 0.00 2.44
283 284 8.307483 TCTGACCAACATGTTTTACTTTTCAAA 58.693 29.630 8.77 0.00 0.00 2.69
284 285 7.831753 TCTGACCAACATGTTTTACTTTTCAA 58.168 30.769 8.77 0.00 0.00 2.69
285 286 7.397892 TCTGACCAACATGTTTTACTTTTCA 57.602 32.000 8.77 3.34 0.00 2.69
286 287 8.696410 TTTCTGACCAACATGTTTTACTTTTC 57.304 30.769 8.77 0.00 0.00 2.29
287 288 9.150348 CTTTTCTGACCAACATGTTTTACTTTT 57.850 29.630 8.77 0.00 0.00 2.27
288 289 8.527810 TCTTTTCTGACCAACATGTTTTACTTT 58.472 29.630 8.77 0.00 0.00 2.66
289 290 8.062065 TCTTTTCTGACCAACATGTTTTACTT 57.938 30.769 8.77 0.00 0.00 2.24
290 291 7.639113 TCTTTTCTGACCAACATGTTTTACT 57.361 32.000 8.77 0.00 0.00 2.24
291 292 7.435192 CCTTCTTTTCTGACCAACATGTTTTAC 59.565 37.037 8.77 3.68 0.00 2.01
292 293 7.123547 ACCTTCTTTTCTGACCAACATGTTTTA 59.876 33.333 8.77 0.00 0.00 1.52
293 294 6.070824 ACCTTCTTTTCTGACCAACATGTTTT 60.071 34.615 8.77 0.00 0.00 2.43
294 295 5.422012 ACCTTCTTTTCTGACCAACATGTTT 59.578 36.000 8.77 0.00 0.00 2.83
295 296 4.956075 ACCTTCTTTTCTGACCAACATGTT 59.044 37.500 4.92 4.92 0.00 2.71
296 297 4.536765 ACCTTCTTTTCTGACCAACATGT 58.463 39.130 0.00 0.00 0.00 3.21
297 298 5.520376 AACCTTCTTTTCTGACCAACATG 57.480 39.130 0.00 0.00 0.00 3.21
298 299 6.601332 TCTAACCTTCTTTTCTGACCAACAT 58.399 36.000 0.00 0.00 0.00 2.71
299 300 5.996644 TCTAACCTTCTTTTCTGACCAACA 58.003 37.500 0.00 0.00 0.00 3.33
300 301 5.049336 GCTCTAACCTTCTTTTCTGACCAAC 60.049 44.000 0.00 0.00 0.00 3.77
301 302 5.063880 GCTCTAACCTTCTTTTCTGACCAA 58.936 41.667 0.00 0.00 0.00 3.67
302 303 4.348168 AGCTCTAACCTTCTTTTCTGACCA 59.652 41.667 0.00 0.00 0.00 4.02
303 304 4.900684 AGCTCTAACCTTCTTTTCTGACC 58.099 43.478 0.00 0.00 0.00 4.02
304 305 6.693466 AGTAGCTCTAACCTTCTTTTCTGAC 58.307 40.000 0.00 0.00 0.00 3.51
305 306 6.919775 AGTAGCTCTAACCTTCTTTTCTGA 57.080 37.500 0.00 0.00 0.00 3.27
306 307 8.691797 AGATAGTAGCTCTAACCTTCTTTTCTG 58.308 37.037 0.00 0.00 31.94 3.02
307 308 8.832458 AGATAGTAGCTCTAACCTTCTTTTCT 57.168 34.615 0.00 0.00 31.94 2.52
308 309 8.139350 GGAGATAGTAGCTCTAACCTTCTTTTC 58.861 40.741 14.75 0.00 32.98 2.29
309 310 7.201839 CGGAGATAGTAGCTCTAACCTTCTTTT 60.202 40.741 14.75 0.00 32.98 2.27
310 311 6.263617 CGGAGATAGTAGCTCTAACCTTCTTT 59.736 42.308 14.75 0.00 32.98 2.52
311 312 5.766174 CGGAGATAGTAGCTCTAACCTTCTT 59.234 44.000 14.75 0.00 32.98 2.52
312 313 5.163174 ACGGAGATAGTAGCTCTAACCTTCT 60.163 44.000 14.75 0.00 32.98 2.85
313 314 5.065235 ACGGAGATAGTAGCTCTAACCTTC 58.935 45.833 14.75 0.00 32.98 3.46
314 315 5.051409 ACGGAGATAGTAGCTCTAACCTT 57.949 43.478 14.75 0.00 32.98 3.50
315 316 4.505390 GGACGGAGATAGTAGCTCTAACCT 60.505 50.000 14.75 0.00 32.98 3.50
316 317 3.752747 GGACGGAGATAGTAGCTCTAACC 59.247 52.174 14.75 11.15 32.98 2.85
317 318 4.387598 TGGACGGAGATAGTAGCTCTAAC 58.612 47.826 14.75 6.57 32.98 2.34
318 319 4.701651 TGGACGGAGATAGTAGCTCTAA 57.298 45.455 14.75 0.00 32.98 2.10
319 320 4.102838 ACTTGGACGGAGATAGTAGCTCTA 59.897 45.833 14.75 0.00 32.98 2.43
320 321 3.117813 ACTTGGACGGAGATAGTAGCTCT 60.118 47.826 14.75 0.00 32.98 4.09
321 322 3.215975 ACTTGGACGGAGATAGTAGCTC 58.784 50.000 6.89 6.89 0.00 4.09
322 323 3.300239 ACTTGGACGGAGATAGTAGCT 57.700 47.619 0.00 0.00 0.00 3.32
323 324 4.388378 AAACTTGGACGGAGATAGTAGC 57.612 45.455 0.00 0.00 0.00 3.58
324 325 8.298140 CCTAATAAACTTGGACGGAGATAGTAG 58.702 40.741 0.00 0.00 0.00 2.57
325 326 7.255730 GCCTAATAAACTTGGACGGAGATAGTA 60.256 40.741 0.00 0.00 0.00 1.82
326 327 6.462628 GCCTAATAAACTTGGACGGAGATAGT 60.463 42.308 0.00 0.00 0.00 2.12
327 328 5.927115 GCCTAATAAACTTGGACGGAGATAG 59.073 44.000 0.00 0.00 0.00 2.08
328 329 5.221581 GGCCTAATAAACTTGGACGGAGATA 60.222 44.000 0.00 0.00 0.00 1.98
329 330 4.444449 GGCCTAATAAACTTGGACGGAGAT 60.444 45.833 0.00 0.00 0.00 2.75
330 331 3.118519 GGCCTAATAAACTTGGACGGAGA 60.119 47.826 0.00 0.00 0.00 3.71
331 332 3.118371 AGGCCTAATAAACTTGGACGGAG 60.118 47.826 1.29 0.00 31.70 4.63
332 333 2.841881 AGGCCTAATAAACTTGGACGGA 59.158 45.455 1.29 0.00 31.70 4.69
333 334 3.203716 GAGGCCTAATAAACTTGGACGG 58.796 50.000 4.42 0.00 31.70 4.79
334 335 3.869065 TGAGGCCTAATAAACTTGGACG 58.131 45.455 4.42 0.00 31.70 4.79
335 336 9.740710 ATAATATGAGGCCTAATAAACTTGGAC 57.259 33.333 14.23 0.00 0.00 4.02
344 345 9.920946 GGATCCAAAATAATATGAGGCCTAATA 57.079 33.333 12.58 12.58 0.00 0.98
345 346 8.401105 TGGATCCAAAATAATATGAGGCCTAAT 58.599 33.333 13.46 6.52 0.00 1.73
346 347 7.764617 TGGATCCAAAATAATATGAGGCCTAA 58.235 34.615 13.46 0.00 0.00 2.69
347 348 7.341885 TGGATCCAAAATAATATGAGGCCTA 57.658 36.000 13.46 0.00 0.00 3.93
348 349 6.218195 TGGATCCAAAATAATATGAGGCCT 57.782 37.500 13.46 3.86 0.00 5.19
349 350 6.494835 ACTTGGATCCAAAATAATATGAGGCC 59.505 38.462 26.87 0.00 35.33 5.19
350 351 7.530426 ACTTGGATCCAAAATAATATGAGGC 57.470 36.000 26.87 0.00 35.33 4.70
351 352 9.754382 CAAACTTGGATCCAAAATAATATGAGG 57.246 33.333 26.87 13.41 35.33 3.86
354 355 9.533253 GGTCAAACTTGGATCCAAAATAATATG 57.467 33.333 26.87 15.25 35.33 1.78
355 356 9.265862 TGGTCAAACTTGGATCCAAAATAATAT 57.734 29.630 26.87 7.54 35.33 1.28
356 357 8.657387 TGGTCAAACTTGGATCCAAAATAATA 57.343 30.769 26.87 9.40 35.33 0.98
357 358 7.552050 TGGTCAAACTTGGATCCAAAATAAT 57.448 32.000 26.87 9.87 35.33 1.28
358 359 6.985653 TGGTCAAACTTGGATCCAAAATAA 57.014 33.333 26.87 9.90 35.33 1.40
359 360 6.496565 ACATGGTCAAACTTGGATCCAAAATA 59.503 34.615 26.87 6.15 35.33 1.40
360 361 5.307716 ACATGGTCAAACTTGGATCCAAAAT 59.692 36.000 26.87 15.84 35.33 1.82
361 362 4.653341 ACATGGTCAAACTTGGATCCAAAA 59.347 37.500 26.87 7.32 35.33 2.44
362 363 4.222336 ACATGGTCAAACTTGGATCCAAA 58.778 39.130 26.87 10.11 35.33 3.28
363 364 3.843422 ACATGGTCAAACTTGGATCCAA 58.157 40.909 25.53 25.53 31.82 3.53
364 365 3.524095 ACATGGTCAAACTTGGATCCA 57.476 42.857 11.44 11.44 0.00 3.41
365 366 6.530019 AAATACATGGTCAAACTTGGATCC 57.470 37.500 4.20 4.20 0.00 3.36
366 367 8.739972 AGTTAAATACATGGTCAAACTTGGATC 58.260 33.333 0.00 0.00 0.00 3.36
367 368 8.650143 AGTTAAATACATGGTCAAACTTGGAT 57.350 30.769 0.00 0.00 0.00 3.41
368 369 9.575868 TTAGTTAAATACATGGTCAAACTTGGA 57.424 29.630 0.00 0.00 0.00 3.53
514 515 9.511144 CGTCTGGTTTTCATTTTAAACTAAAGT 57.489 29.630 0.00 0.00 36.12 2.66
515 516 9.724839 TCGTCTGGTTTTCATTTTAAACTAAAG 57.275 29.630 0.00 0.00 36.12 1.85
517 518 9.724839 CTTCGTCTGGTTTTCATTTTAAACTAA 57.275 29.630 0.00 0.00 36.12 2.24
518 519 8.347035 CCTTCGTCTGGTTTTCATTTTAAACTA 58.653 33.333 0.00 0.00 36.12 2.24
519 520 7.200455 CCTTCGTCTGGTTTTCATTTTAAACT 58.800 34.615 0.00 0.00 36.12 2.66
520 521 6.419710 CCCTTCGTCTGGTTTTCATTTTAAAC 59.580 38.462 0.00 0.00 35.31 2.01
521 522 6.321690 TCCCTTCGTCTGGTTTTCATTTTAAA 59.678 34.615 0.00 0.00 0.00 1.52
522 523 5.828859 TCCCTTCGTCTGGTTTTCATTTTAA 59.171 36.000 0.00 0.00 0.00 1.52
523 524 5.378332 TCCCTTCGTCTGGTTTTCATTTTA 58.622 37.500 0.00 0.00 0.00 1.52
524 525 4.211920 TCCCTTCGTCTGGTTTTCATTTT 58.788 39.130 0.00 0.00 0.00 1.82
525 526 3.821033 CTCCCTTCGTCTGGTTTTCATTT 59.179 43.478 0.00 0.00 0.00 2.32
526 527 3.181443 ACTCCCTTCGTCTGGTTTTCATT 60.181 43.478 0.00 0.00 0.00 2.57
527 528 2.372172 ACTCCCTTCGTCTGGTTTTCAT 59.628 45.455 0.00 0.00 0.00 2.57
528 529 1.766496 ACTCCCTTCGTCTGGTTTTCA 59.234 47.619 0.00 0.00 0.00 2.69
529 530 2.545537 ACTCCCTTCGTCTGGTTTTC 57.454 50.000 0.00 0.00 0.00 2.29
530 531 2.970640 AGTACTCCCTTCGTCTGGTTTT 59.029 45.455 0.00 0.00 0.00 2.43
531 532 2.606378 AGTACTCCCTTCGTCTGGTTT 58.394 47.619 0.00 0.00 0.00 3.27
532 533 2.305858 AGTACTCCCTTCGTCTGGTT 57.694 50.000 0.00 0.00 0.00 3.67
533 534 2.305858 AAGTACTCCCTTCGTCTGGT 57.694 50.000 0.00 0.00 0.00 4.00
534 535 5.340439 AAATAAGTACTCCCTTCGTCTGG 57.660 43.478 0.00 0.00 0.00 3.86
535 536 5.970023 CGTAAATAAGTACTCCCTTCGTCTG 59.030 44.000 0.00 0.00 0.00 3.51
536 537 5.449725 GCGTAAATAAGTACTCCCTTCGTCT 60.450 44.000 0.00 0.00 0.00 4.18
537 538 4.737279 GCGTAAATAAGTACTCCCTTCGTC 59.263 45.833 0.00 0.00 0.00 4.20
538 539 4.440663 GGCGTAAATAAGTACTCCCTTCGT 60.441 45.833 0.00 0.00 0.00 3.85
539 540 4.047142 GGCGTAAATAAGTACTCCCTTCG 58.953 47.826 0.00 0.00 0.00 3.79
540 541 4.375272 GGGCGTAAATAAGTACTCCCTTC 58.625 47.826 0.00 0.00 43.16 3.46
541 542 3.181472 CGGGCGTAAATAAGTACTCCCTT 60.181 47.826 9.61 0.80 43.96 3.95
542 543 2.363359 CGGGCGTAAATAAGTACTCCCT 59.637 50.000 9.61 0.00 43.96 4.20
543 544 2.747436 CGGGCGTAAATAAGTACTCCC 58.253 52.381 0.00 0.00 43.09 4.30
544 545 2.130395 GCGGGCGTAAATAAGTACTCC 58.870 52.381 0.00 0.00 0.00 3.85
545 546 1.783140 CGCGGGCGTAAATAAGTACTC 59.217 52.381 4.64 0.00 34.35 2.59
546 547 1.843992 CGCGGGCGTAAATAAGTACT 58.156 50.000 4.64 0.00 34.35 2.73
547 548 0.230515 GCGCGGGCGTAAATAAGTAC 59.769 55.000 9.31 0.00 42.09 2.73
548 549 0.102844 AGCGCGGGCGTAAATAAGTA 59.897 50.000 19.46 0.00 46.35 2.24
549 550 0.741927 AAGCGCGGGCGTAAATAAGT 60.742 50.000 19.46 0.00 46.35 2.24
550 551 0.042448 GAAGCGCGGGCGTAAATAAG 60.042 55.000 19.46 0.00 46.35 1.73
551 552 1.430707 GGAAGCGCGGGCGTAAATAA 61.431 55.000 19.46 0.00 46.35 1.40
552 553 1.884004 GGAAGCGCGGGCGTAAATA 60.884 57.895 19.46 0.00 46.35 1.40
553 554 3.199891 GGAAGCGCGGGCGTAAAT 61.200 61.111 19.46 4.18 46.35 1.40
554 555 3.961838 ATGGAAGCGCGGGCGTAAA 62.962 57.895 19.46 7.84 46.35 2.01
555 556 4.460683 ATGGAAGCGCGGGCGTAA 62.461 61.111 19.46 8.22 46.35 3.18
556 557 4.884257 GATGGAAGCGCGGGCGTA 62.884 66.667 19.46 7.11 46.35 4.42
559 560 3.577313 GAAGATGGAAGCGCGGGC 61.577 66.667 17.92 17.92 40.37 6.13
560 561 1.305219 TTTGAAGATGGAAGCGCGGG 61.305 55.000 8.83 0.00 0.00 6.13
561 562 0.521291 TTTTGAAGATGGAAGCGCGG 59.479 50.000 8.83 0.00 0.00 6.46
562 563 2.549633 ATTTTGAAGATGGAAGCGCG 57.450 45.000 0.00 0.00 0.00 6.86
563 564 6.704512 TTTTTATTTTGAAGATGGAAGCGC 57.295 33.333 0.00 0.00 0.00 5.92
594 595 9.077885 TGATGAAGCCAGAGTAGTTTAATTTTT 57.922 29.630 0.00 0.00 0.00 1.94
595 596 8.635765 TGATGAAGCCAGAGTAGTTTAATTTT 57.364 30.769 0.00 0.00 0.00 1.82
596 597 8.635765 TTGATGAAGCCAGAGTAGTTTAATTT 57.364 30.769 0.00 0.00 0.00 1.82
597 598 8.515414 GTTTGATGAAGCCAGAGTAGTTTAATT 58.485 33.333 0.00 0.00 0.00 1.40
598 599 7.665559 TGTTTGATGAAGCCAGAGTAGTTTAAT 59.334 33.333 0.00 0.00 0.00 1.40
599 600 6.995686 TGTTTGATGAAGCCAGAGTAGTTTAA 59.004 34.615 0.00 0.00 0.00 1.52
600 601 6.530120 TGTTTGATGAAGCCAGAGTAGTTTA 58.470 36.000 0.00 0.00 0.00 2.01
601 602 5.376625 TGTTTGATGAAGCCAGAGTAGTTT 58.623 37.500 0.00 0.00 0.00 2.66
602 603 4.973168 TGTTTGATGAAGCCAGAGTAGTT 58.027 39.130 0.00 0.00 0.00 2.24
603 604 4.623932 TGTTTGATGAAGCCAGAGTAGT 57.376 40.909 0.00 0.00 0.00 2.73
604 605 5.065731 GGAATGTTTGATGAAGCCAGAGTAG 59.934 44.000 0.00 0.00 0.00 2.57
605 606 4.943705 GGAATGTTTGATGAAGCCAGAGTA 59.056 41.667 0.00 0.00 0.00 2.59
606 607 3.760684 GGAATGTTTGATGAAGCCAGAGT 59.239 43.478 0.00 0.00 0.00 3.24
607 608 3.181503 CGGAATGTTTGATGAAGCCAGAG 60.182 47.826 0.00 0.00 0.00 3.35
608 609 2.749076 CGGAATGTTTGATGAAGCCAGA 59.251 45.455 0.00 0.00 0.00 3.86
609 610 2.749076 TCGGAATGTTTGATGAAGCCAG 59.251 45.455 0.00 0.00 0.00 4.85
610 611 2.749076 CTCGGAATGTTTGATGAAGCCA 59.251 45.455 0.00 0.00 0.00 4.75
611 612 2.098117 CCTCGGAATGTTTGATGAAGCC 59.902 50.000 0.00 0.00 0.00 4.35
612 613 2.098117 CCCTCGGAATGTTTGATGAAGC 59.902 50.000 0.00 0.00 0.00 3.86
613 614 2.098117 GCCCTCGGAATGTTTGATGAAG 59.902 50.000 0.00 0.00 0.00 3.02
614 615 2.091541 GCCCTCGGAATGTTTGATGAA 58.908 47.619 0.00 0.00 0.00 2.57
615 616 1.681780 GGCCCTCGGAATGTTTGATGA 60.682 52.381 0.00 0.00 0.00 2.92
616 617 0.740737 GGCCCTCGGAATGTTTGATG 59.259 55.000 0.00 0.00 0.00 3.07
617 618 0.331278 TGGCCCTCGGAATGTTTGAT 59.669 50.000 0.00 0.00 0.00 2.57
618 619 0.322456 CTGGCCCTCGGAATGTTTGA 60.322 55.000 0.00 0.00 0.00 2.69
619 620 1.937546 GCTGGCCCTCGGAATGTTTG 61.938 60.000 0.00 0.00 0.00 2.93
620 621 1.678970 GCTGGCCCTCGGAATGTTT 60.679 57.895 0.00 0.00 0.00 2.83
621 622 2.044946 GCTGGCCCTCGGAATGTT 60.045 61.111 0.00 0.00 0.00 2.71
622 623 4.473520 CGCTGGCCCTCGGAATGT 62.474 66.667 0.00 0.00 0.00 2.71
646 647 1.064505 CCATAAATCACACTGGCGCAG 59.935 52.381 10.83 7.58 37.52 5.18
647 648 1.093972 CCATAAATCACACTGGCGCA 58.906 50.000 10.83 0.00 0.00 6.09
648 649 1.378531 TCCATAAATCACACTGGCGC 58.621 50.000 0.00 0.00 0.00 6.53
649 650 3.303329 CGATTCCATAAATCACACTGGCG 60.303 47.826 0.00 0.00 43.44 5.69
650 651 3.003689 CCGATTCCATAAATCACACTGGC 59.996 47.826 0.00 0.00 43.44 4.85
651 652 3.565482 CCCGATTCCATAAATCACACTGG 59.435 47.826 0.00 0.00 43.44 4.00
652 653 3.565482 CCCCGATTCCATAAATCACACTG 59.435 47.826 0.00 0.00 43.44 3.66
653 654 3.202151 ACCCCGATTCCATAAATCACACT 59.798 43.478 0.00 0.00 43.44 3.55
654 655 3.315191 CACCCCGATTCCATAAATCACAC 59.685 47.826 0.00 0.00 43.44 3.82
655 656 3.053991 ACACCCCGATTCCATAAATCACA 60.054 43.478 0.00 0.00 43.44 3.58
656 657 3.551846 ACACCCCGATTCCATAAATCAC 58.448 45.455 0.00 0.00 43.44 3.06
657 658 3.943671 ACACCCCGATTCCATAAATCA 57.056 42.857 0.00 0.00 43.44 2.57
658 659 3.568430 GGAACACCCCGATTCCATAAATC 59.432 47.826 0.00 0.00 43.40 2.17
659 660 3.562182 GGAACACCCCGATTCCATAAAT 58.438 45.455 0.00 0.00 43.40 1.40
660 661 3.007473 GGAACACCCCGATTCCATAAA 57.993 47.619 0.00 0.00 43.40 1.40
661 662 2.721425 GGAACACCCCGATTCCATAA 57.279 50.000 0.00 0.00 43.40 1.90
1029 1030 3.554692 GGATTCTGCACGACGCCG 61.555 66.667 0.00 0.00 41.33 6.46
1034 1035 1.191489 TGTCCTGGGATTCTGCACGA 61.191 55.000 0.00 0.00 0.00 4.35
1035 1036 1.021390 GTGTCCTGGGATTCTGCACG 61.021 60.000 0.00 0.00 0.00 5.34
1040 1041 1.842562 CCTCATGTGTCCTGGGATTCT 59.157 52.381 0.00 0.00 0.00 2.40
1127 1146 2.925706 TTCGGCAGTAGGGGCACA 60.926 61.111 0.00 0.00 0.00 4.57
1128 1147 2.436115 GTTCGGCAGTAGGGGCAC 60.436 66.667 0.00 0.00 0.00 5.01
1130 1149 3.400054 AGGTTCGGCAGTAGGGGC 61.400 66.667 0.00 0.00 0.00 5.80
1186 1214 2.032071 GGTGGTGTCGGAACAGGG 59.968 66.667 0.00 0.00 35.64 4.45
1191 1219 3.998672 GCGGAGGTGGTGTCGGAA 61.999 66.667 0.00 0.00 0.00 4.30
1277 1315 8.332464 TGATAAACATAAAACGAAAGATAGCGG 58.668 33.333 0.00 0.00 0.00 5.52
1352 1392 9.988350 GATAAACTAGAATTCTGATTCGCAAAA 57.012 29.630 18.47 0.00 45.10 2.44
1353 1393 8.328146 CGATAAACTAGAATTCTGATTCGCAAA 58.672 33.333 18.47 0.00 45.10 3.68
1354 1394 7.491372 ACGATAAACTAGAATTCTGATTCGCAA 59.509 33.333 18.47 0.00 45.10 4.85
1355 1395 6.978659 ACGATAAACTAGAATTCTGATTCGCA 59.021 34.615 18.47 0.00 45.10 5.10
1356 1396 7.396190 ACGATAAACTAGAATTCTGATTCGC 57.604 36.000 18.47 1.69 45.10 4.70
1357 1397 9.625009 CAAACGATAAACTAGAATTCTGATTCG 57.375 33.333 18.47 17.17 45.10 3.34
1358 1398 9.427127 GCAAACGATAAACTAGAATTCTGATTC 57.573 33.333 18.47 5.62 41.63 2.52
1359 1399 8.398665 GGCAAACGATAAACTAGAATTCTGATT 58.601 33.333 18.47 11.80 0.00 2.57
1360 1400 7.770897 AGGCAAACGATAAACTAGAATTCTGAT 59.229 33.333 18.47 2.82 0.00 2.90
1361 1401 7.103641 AGGCAAACGATAAACTAGAATTCTGA 58.896 34.615 18.47 1.74 0.00 3.27
1362 1402 7.308782 AGGCAAACGATAAACTAGAATTCTG 57.691 36.000 18.47 10.29 0.00 3.02
1367 1407 5.974108 AGCTAGGCAAACGATAAACTAGAA 58.026 37.500 0.00 0.00 31.86 2.10
1415 1455 9.585099 GATAATTTGTTATTGCAACCATCAGAA 57.415 29.630 0.00 0.00 0.00 3.02
1471 1517 5.348986 GTGCTATGGACAGAAGAAACGATA 58.651 41.667 0.00 0.00 0.00 2.92
1475 1521 2.673368 CCGTGCTATGGACAGAAGAAAC 59.327 50.000 0.00 0.00 0.00 2.78
1478 1531 1.204704 CACCGTGCTATGGACAGAAGA 59.795 52.381 1.95 0.00 0.00 2.87
1479 1532 1.204704 TCACCGTGCTATGGACAGAAG 59.795 52.381 0.00 0.00 0.00 2.85
1482 1544 1.136891 TCATCACCGTGCTATGGACAG 59.863 52.381 0.00 0.00 0.00 3.51
1509 1571 7.219535 GCATAATAGCTGAGTGAACAATTTGTG 59.780 37.037 2.13 0.00 0.00 3.33
1529 1595 7.826252 AGTAATAGCGATTCAGAATGGCATAAT 59.174 33.333 26.48 16.06 43.98 1.28
1530 1596 7.161404 AGTAATAGCGATTCAGAATGGCATAA 58.839 34.615 26.48 14.78 43.98 1.90
1538 1604 8.129840 GTGAGTAGAAGTAATAGCGATTCAGAA 58.870 37.037 0.00 0.00 0.00 3.02
1598 1676 5.930135 AGAAGACTAAGAAAAACAGAGCCA 58.070 37.500 0.00 0.00 0.00 4.75
1711 1807 3.858868 GACAGACGGTTGCGGCTGA 62.859 63.158 4.10 0.00 32.86 4.26
2031 2164 7.833682 TCAGGGAAAATAATCAAGTGCAGATAA 59.166 33.333 0.00 0.00 0.00 1.75
2032 2165 7.345691 TCAGGGAAAATAATCAAGTGCAGATA 58.654 34.615 0.00 0.00 0.00 1.98
2078 2221 6.094603 GGTAGCATTTCTGTGATCAACTTGAT 59.905 38.462 3.80 3.80 40.34 2.57
2283 2452 8.091449 ACCAGTGTTTTGTAACAAATGAAGAAA 58.909 29.630 3.00 0.00 45.33 2.52
2625 8983 0.179009 ATGGGGTGGATCAGCAATCG 60.179 55.000 0.00 0.00 34.99 3.34
2717 9075 8.412456 TCTTTGTAGTGAAATTGAAATGCTTGA 58.588 29.630 0.00 0.00 0.00 3.02
2751 9109 5.098211 GCAAAGAAAAGATCCTCAATTCCG 58.902 41.667 0.00 0.00 0.00 4.30
2783 9141 7.202038 CCACTAATTCATCATCAGTTCCCTCTA 60.202 40.741 0.00 0.00 0.00 2.43
2793 9151 4.641541 CAGTTGGCCACTAATTCATCATCA 59.358 41.667 3.88 0.00 32.76 3.07
2857 9215 2.023888 AGCCCAGTCTTTCTAGCCTCTA 60.024 50.000 0.00 0.00 0.00 2.43
2864 9222 6.432581 TCTAGTGAATAGCCCAGTCTTTCTA 58.567 40.000 0.00 0.00 0.00 2.10
2923 9281 3.641437 TGCACAATTTTGCCTGTAGTC 57.359 42.857 13.77 0.00 42.25 2.59
2926 9284 3.573538 ACAGATGCACAATTTTGCCTGTA 59.426 39.130 20.19 2.54 40.85 2.74
2967 9326 9.545105 ACAACAATGAATTTGCTTTCTGAATTA 57.455 25.926 0.00 0.00 39.03 1.40
3029 9389 8.534496 CAACTGTCATACCTCCATCATATCATA 58.466 37.037 0.00 0.00 0.00 2.15
3149 9522 0.814010 ACGTTCAAGTGACCACCAGC 60.814 55.000 0.00 0.00 0.00 4.85
3409 9785 8.067189 CCACAAACAATAAAAATGGTTGCTTAC 58.933 33.333 4.33 0.00 46.88 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.