Multiple sequence alignment - TraesCS7B01G160900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G160900 chr7B 100.000 5259 0 0 1 5259 219648059 219653317 0.000000e+00 9712.0
1 TraesCS7B01G160900 chr7B 94.086 186 7 3 3528 3710 632274157 632273973 4.010000e-71 279.0
2 TraesCS7B01G160900 chr7B 90.047 211 16 4 3528 3734 610171018 610170809 8.680000e-68 268.0
3 TraesCS7B01G160900 chr7B 92.500 40 1 2 1966 2003 489874356 489874317 7.360000e-04 56.5
4 TraesCS7B01G160900 chr7D 92.279 1852 55 31 88 1877 244465396 244467221 0.000000e+00 2547.0
5 TraesCS7B01G160900 chr7D 91.434 1576 64 31 1995 3532 244467220 244468762 0.000000e+00 2097.0
6 TraesCS7B01G160900 chr7D 89.153 1051 55 25 3738 4751 244468819 244469847 0.000000e+00 1254.0
7 TraesCS7B01G160900 chr7D 94.093 237 8 3 4922 5154 244483696 244483930 6.480000e-94 355.0
8 TraesCS7B01G160900 chr7D 88.571 175 8 9 4740 4907 244483550 244483719 8.930000e-48 202.0
9 TraesCS7B01G160900 chr7A 90.522 1857 74 41 89 1871 260029549 260031377 0.000000e+00 2361.0
10 TraesCS7B01G160900 chr7A 90.040 1506 69 39 3703 5154 260032973 260034451 0.000000e+00 1875.0
11 TraesCS7B01G160900 chr7A 88.305 1180 42 30 2384 3532 260031867 260032981 0.000000e+00 1327.0
12 TraesCS7B01G160900 chr7A 88.725 408 22 11 1995 2384 260031386 260031787 1.320000e-130 477.0
13 TraesCS7B01G160900 chr7A 92.857 42 0 3 1966 2004 36656031 36656072 2.050000e-04 58.4
14 TraesCS7B01G160900 chr2B 96.648 179 3 2 3532 3707 89545514 89545336 1.430000e-75 294.0
15 TraesCS7B01G160900 chr2B 96.045 177 3 3 3530 3702 184781760 184781936 8.620000e-73 285.0
16 TraesCS7B01G160900 chr2B 94.086 186 7 3 3528 3710 526763058 526763242 4.010000e-71 279.0
17 TraesCS7B01G160900 chr2B 100.000 28 0 0 1543 1570 489419253 489419280 1.000000e-02 52.8
18 TraesCS7B01G160900 chr5B 96.591 176 3 2 3530 3702 363665298 363665473 6.660000e-74 289.0
19 TraesCS7B01G160900 chr5B 94.149 188 6 4 3528 3711 589201210 589201024 1.120000e-71 281.0
20 TraesCS7B01G160900 chr5B 94.059 101 4 1 5158 5258 299905562 299905464 9.120000e-33 152.0
21 TraesCS7B01G160900 chr5B 96.875 32 0 1 1543 1573 476170506 476170537 1.000000e-02 52.8
22 TraesCS7B01G160900 chr1B 93.814 194 6 4 3532 3722 25246232 25246042 2.400000e-73 287.0
23 TraesCS7B01G160900 chr1B 89.130 46 2 3 1966 2008 147124387 147124432 3.000000e-03 54.7
24 TraesCS7B01G160900 chr4B 95.531 179 5 2 3530 3705 330634792 330634614 3.100000e-72 283.0
25 TraesCS7B01G160900 chr4A 94.118 102 4 1 5158 5259 195979621 195979720 2.540000e-33 154.0
26 TraesCS7B01G160900 chr3D 93.137 102 5 1 5158 5259 19891785 19891884 1.180000e-31 148.0
27 TraesCS7B01G160900 chr3D 93.137 102 5 1 5158 5259 253380459 253380558 1.180000e-31 148.0
28 TraesCS7B01G160900 chr3D 97.059 34 0 1 1966 1998 137626535 137626502 7.360000e-04 56.5
29 TraesCS7B01G160900 chr6D 94.595 37 1 1 1966 2001 6756756 6756792 7.360000e-04 56.5
30 TraesCS7B01G160900 chr2D 96.970 33 1 0 1966 1998 616204082 616204050 7.360000e-04 56.5
31 TraesCS7B01G160900 chr2D 100.000 28 0 0 1543 1570 417544321 417544348 1.000000e-02 52.8
32 TraesCS7B01G160900 chr1D 100.000 30 0 0 1965 1994 463491005 463490976 7.360000e-04 56.5
33 TraesCS7B01G160900 chr6B 89.130 46 2 3 1966 2008 521034542 521034587 3.000000e-03 54.7
34 TraesCS7B01G160900 chr6B 100.000 28 0 0 1966 1993 691796564 691796591 1.000000e-02 52.8
35 TraesCS7B01G160900 chr5D 96.875 32 0 1 1543 1573 396370482 396370513 1.000000e-02 52.8
36 TraesCS7B01G160900 chr5A 96.875 32 0 1 1543 1573 502072228 502072259 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G160900 chr7B 219648059 219653317 5258 False 9712 9712 100.000000 1 5259 1 chr7B.!!$F1 5258
1 TraesCS7B01G160900 chr7D 244465396 244469847 4451 False 1966 2547 90.955333 88 4751 3 chr7D.!!$F1 4663
2 TraesCS7B01G160900 chr7A 260029549 260034451 4902 False 1510 2361 89.398000 89 5154 4 chr7A.!!$F2 5065

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.106708 TGTCACTGCTTGGAGACACC 59.893 55.0 0.00 0.0 42.67 4.16 F
48 49 0.108424 ACTCAACGAGGATCTGCTGC 60.108 55.0 0.00 0.0 33.35 5.25 F
51 52 0.179137 CAACGAGGATCTGCTGCGTA 60.179 55.0 0.00 0.0 34.46 4.42 F
54 55 0.312102 CGAGGATCTGCTGCGTATCA 59.688 55.0 13.76 0.0 0.00 2.15 F
791 836 0.313672 TTCCAAGCAAATGCACGACC 59.686 50.0 8.28 0.0 45.16 4.79 F
836 881 0.749649 AGTGAGATAGGAAGCTGCGG 59.250 55.0 0.00 0.0 0.00 5.69 F
1475 1538 1.217882 CTCGTTGGCGTCAAGAAGTT 58.782 50.0 0.75 0.0 39.49 2.66 F
2978 3194 0.317770 AACTGCGCACAACAATTCCG 60.318 50.0 5.66 0.0 0.00 4.30 F
3634 3873 0.035598 CGTGTGTGATGGGGGTTGTA 59.964 55.0 0.00 0.0 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1461 1524 0.250295 CCAGGAACTTCTTGACGCCA 60.250 55.000 2.50 0.00 34.60 5.69 R
1893 1991 3.818773 GGCTTTCACTGTAAACCTTAGCA 59.181 43.478 0.00 0.00 0.00 3.49 R
1894 1992 4.072839 AGGCTTTCACTGTAAACCTTAGC 58.927 43.478 0.00 0.00 0.00 3.09 R
1904 2002 5.165961 TGCTTAGATTAGGCTTTCACTGT 57.834 39.130 0.00 0.00 0.00 3.55 R
2553 2756 0.610174 CGATCCGTCCATCCATCCAT 59.390 55.000 0.00 0.00 0.00 3.41 R
2720 2927 4.385825 TGCAGGTTAGCTAATTAATCCCG 58.614 43.478 9.88 0.00 34.99 5.14 R
3322 3541 0.445436 GAACACTCCAGATTGCTGCG 59.555 55.000 0.00 0.00 40.91 5.18 R
4102 4413 0.041047 TGTTGAACGACGACGACGAT 60.041 50.000 25.15 14.38 42.66 3.73 R
5198 5531 0.104882 TGTCCTCCCAGGTGTTGGTA 60.105 55.000 0.00 0.00 46.25 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.719600 GCTCCTACTGTCACTGCTTG 58.280 55.000 0.00 0.00 0.00 4.01
20 21 1.674221 GCTCCTACTGTCACTGCTTGG 60.674 57.143 0.00 0.00 0.00 3.61
21 22 1.895798 CTCCTACTGTCACTGCTTGGA 59.104 52.381 0.00 0.00 0.00 3.53
22 23 1.895798 TCCTACTGTCACTGCTTGGAG 59.104 52.381 0.00 0.00 0.00 3.86
23 24 1.895798 CCTACTGTCACTGCTTGGAGA 59.104 52.381 0.00 0.00 0.00 3.71
24 25 2.353208 CCTACTGTCACTGCTTGGAGAC 60.353 54.545 0.00 0.00 0.00 3.36
25 26 1.123077 ACTGTCACTGCTTGGAGACA 58.877 50.000 0.00 0.00 38.56 3.41
26 27 1.202580 ACTGTCACTGCTTGGAGACAC 60.203 52.381 0.00 0.00 42.67 3.67
27 28 0.106708 TGTCACTGCTTGGAGACACC 59.893 55.000 0.00 0.00 42.67 4.16
28 29 0.394565 GTCACTGCTTGGAGACACCT 59.605 55.000 0.00 0.00 42.67 4.00
29 30 1.618837 GTCACTGCTTGGAGACACCTA 59.381 52.381 0.00 0.00 42.67 3.08
30 31 1.618837 TCACTGCTTGGAGACACCTAC 59.381 52.381 0.00 0.00 42.67 3.18
31 32 1.620819 CACTGCTTGGAGACACCTACT 59.379 52.381 0.00 0.00 42.67 2.57
32 33 1.896465 ACTGCTTGGAGACACCTACTC 59.104 52.381 0.00 0.00 42.67 2.59
33 34 1.895798 CTGCTTGGAGACACCTACTCA 59.104 52.381 0.00 0.00 42.67 3.41
34 35 2.300152 CTGCTTGGAGACACCTACTCAA 59.700 50.000 0.00 0.00 42.67 3.02
35 36 2.037251 TGCTTGGAGACACCTACTCAAC 59.963 50.000 0.00 0.00 42.67 3.18
36 37 2.927014 GCTTGGAGACACCTACTCAACG 60.927 54.545 0.00 0.00 42.67 4.10
37 38 2.281539 TGGAGACACCTACTCAACGA 57.718 50.000 0.00 0.00 39.86 3.85
38 39 2.160205 TGGAGACACCTACTCAACGAG 58.840 52.381 0.00 0.00 39.86 4.18
39 40 1.473278 GGAGACACCTACTCAACGAGG 59.527 57.143 0.00 0.00 38.92 4.63
40 41 2.434428 GAGACACCTACTCAACGAGGA 58.566 52.381 0.00 0.00 36.61 3.71
41 42 3.018149 GAGACACCTACTCAACGAGGAT 58.982 50.000 0.00 0.00 36.61 3.24
42 43 3.018149 AGACACCTACTCAACGAGGATC 58.982 50.000 0.00 0.00 36.61 3.36
43 44 3.018149 GACACCTACTCAACGAGGATCT 58.982 50.000 0.00 0.00 36.61 2.75
44 45 2.755655 ACACCTACTCAACGAGGATCTG 59.244 50.000 0.00 0.00 36.61 2.90
45 46 1.751924 ACCTACTCAACGAGGATCTGC 59.248 52.381 0.00 0.00 36.61 4.26
46 47 2.028130 CCTACTCAACGAGGATCTGCT 58.972 52.381 0.00 0.00 34.46 4.24
47 48 2.223688 CCTACTCAACGAGGATCTGCTG 60.224 54.545 0.00 0.00 34.46 4.41
48 49 0.108424 ACTCAACGAGGATCTGCTGC 60.108 55.000 0.00 0.00 33.35 5.25
49 50 1.144565 CTCAACGAGGATCTGCTGCG 61.145 60.000 0.00 0.00 0.00 5.18
50 51 1.446792 CAACGAGGATCTGCTGCGT 60.447 57.895 0.00 0.00 36.68 5.24
51 52 0.179137 CAACGAGGATCTGCTGCGTA 60.179 55.000 0.00 0.00 34.46 4.42
52 53 0.747255 AACGAGGATCTGCTGCGTAT 59.253 50.000 0.00 0.00 34.46 3.06
53 54 0.312416 ACGAGGATCTGCTGCGTATC 59.688 55.000 5.69 5.69 32.94 2.24
54 55 0.312102 CGAGGATCTGCTGCGTATCA 59.688 55.000 13.76 0.00 0.00 2.15
55 56 1.777101 GAGGATCTGCTGCGTATCAC 58.223 55.000 13.76 5.86 0.00 3.06
56 57 1.339610 GAGGATCTGCTGCGTATCACT 59.660 52.381 13.76 9.31 0.00 3.41
57 58 1.339610 AGGATCTGCTGCGTATCACTC 59.660 52.381 13.76 0.55 0.00 3.51
58 59 1.067669 GGATCTGCTGCGTATCACTCA 59.932 52.381 13.76 0.00 0.00 3.41
59 60 2.123342 GATCTGCTGCGTATCACTCAC 58.877 52.381 8.61 0.00 0.00 3.51
60 61 0.887933 TCTGCTGCGTATCACTCACA 59.112 50.000 0.00 0.00 0.00 3.58
61 62 1.272212 TCTGCTGCGTATCACTCACAA 59.728 47.619 0.00 0.00 0.00 3.33
62 63 2.068519 CTGCTGCGTATCACTCACAAA 58.931 47.619 0.00 0.00 0.00 2.83
63 64 2.480037 CTGCTGCGTATCACTCACAAAA 59.520 45.455 0.00 0.00 0.00 2.44
64 65 3.073678 TGCTGCGTATCACTCACAAAAT 58.926 40.909 0.00 0.00 0.00 1.82
65 66 3.501828 TGCTGCGTATCACTCACAAAATT 59.498 39.130 0.00 0.00 0.00 1.82
66 67 4.693095 TGCTGCGTATCACTCACAAAATTA 59.307 37.500 0.00 0.00 0.00 1.40
67 68 5.180304 TGCTGCGTATCACTCACAAAATTAA 59.820 36.000 0.00 0.00 0.00 1.40
68 69 5.508224 GCTGCGTATCACTCACAAAATTAAC 59.492 40.000 0.00 0.00 0.00 2.01
69 70 6.546972 TGCGTATCACTCACAAAATTAACA 57.453 33.333 0.00 0.00 0.00 2.41
70 71 6.598525 TGCGTATCACTCACAAAATTAACAG 58.401 36.000 0.00 0.00 0.00 3.16
71 72 6.425417 TGCGTATCACTCACAAAATTAACAGA 59.575 34.615 0.00 0.00 0.00 3.41
72 73 7.041712 TGCGTATCACTCACAAAATTAACAGAA 60.042 33.333 0.00 0.00 0.00 3.02
73 74 7.801315 GCGTATCACTCACAAAATTAACAGAAA 59.199 33.333 0.00 0.00 0.00 2.52
74 75 9.318041 CGTATCACTCACAAAATTAACAGAAAG 57.682 33.333 0.00 0.00 0.00 2.62
77 78 9.736023 ATCACTCACAAAATTAACAGAAAGTTC 57.264 29.630 0.00 0.00 41.64 3.01
78 79 8.956426 TCACTCACAAAATTAACAGAAAGTTCT 58.044 29.630 0.00 0.00 41.64 3.01
79 80 9.573133 CACTCACAAAATTAACAGAAAGTTCTT 57.427 29.630 0.00 0.00 41.64 2.52
134 135 2.029918 GCCCTAGGCTGTTGTTTTTCTG 60.030 50.000 2.05 0.00 46.69 3.02
172 194 6.974677 TTGTACGTAACTTGTTCTAGAACG 57.025 37.500 26.35 17.70 43.94 3.95
244 266 3.067106 ACGGCTAAGACATGTCACAAAG 58.933 45.455 27.02 17.64 0.00 2.77
336 359 6.039717 CAGTCATCCTGAAACCAAAAGAAAGA 59.960 38.462 0.00 0.00 44.49 2.52
395 418 1.160137 GGCAATCAGTCACACTCCAC 58.840 55.000 0.00 0.00 0.00 4.02
443 466 2.897350 GGCGGAATCTGAAGCGGG 60.897 66.667 0.00 0.00 0.00 6.13
573 614 3.617368 GGAGAAGGCACCGAGCTA 58.383 61.111 0.00 0.00 44.79 3.32
663 708 4.865365 GCAGCCGATCTCTATATAAACACC 59.135 45.833 0.00 0.00 0.00 4.16
700 745 1.945317 ACTCCCCCTCCCTACTACAAT 59.055 52.381 0.00 0.00 0.00 2.71
719 764 4.189539 CCCCCATCTCTCTCTCCG 57.810 66.667 0.00 0.00 0.00 4.63
789 834 1.612950 ACATTCCAAGCAAATGCACGA 59.387 42.857 8.28 0.00 45.16 4.35
791 836 0.313672 TTCCAAGCAAATGCACGACC 59.686 50.000 8.28 0.00 45.16 4.79
836 881 0.749649 AGTGAGATAGGAAGCTGCGG 59.250 55.000 0.00 0.00 0.00 5.69
893 939 2.230508 CGTCCCTGTGAACTACAAGCTA 59.769 50.000 0.00 0.00 39.20 3.32
894 940 3.586892 GTCCCTGTGAACTACAAGCTAC 58.413 50.000 0.00 0.00 39.20 3.58
924 970 2.424601 AGTGCGGCTATTAGTTCGTACA 59.575 45.455 21.09 7.88 39.86 2.90
971 1021 3.369756 GCTAGTTTGTGCGTGCTATTACA 59.630 43.478 0.00 0.00 0.00 2.41
1475 1538 1.217882 CTCGTTGGCGTCAAGAAGTT 58.782 50.000 0.75 0.00 39.49 2.66
1638 1701 8.443176 TCCTCCTTGATTGCTGAATTATTAGAT 58.557 33.333 0.00 0.00 0.00 1.98
1776 1864 3.079578 TGCGTGTTAGTAGTGCTACTCT 58.920 45.455 14.38 0.00 44.58 3.24
1901 1999 8.422577 AACTTGAATAAAATTCCTGCTAAGGT 57.577 30.769 0.00 0.00 44.82 3.50
1902 2000 8.422577 ACTTGAATAAAATTCCTGCTAAGGTT 57.577 30.769 0.00 0.00 44.82 3.50
1903 2001 8.870116 ACTTGAATAAAATTCCTGCTAAGGTTT 58.130 29.630 0.00 0.00 44.82 3.27
1906 2004 9.303116 TGAATAAAATTCCTGCTAAGGTTTACA 57.697 29.630 0.00 0.00 44.82 2.41
1907 2005 9.788960 GAATAAAATTCCTGCTAAGGTTTACAG 57.211 33.333 0.00 0.00 44.82 2.74
1908 2006 8.879427 ATAAAATTCCTGCTAAGGTTTACAGT 57.121 30.769 0.00 0.00 44.82 3.55
1909 2007 6.575162 AAATTCCTGCTAAGGTTTACAGTG 57.425 37.500 0.00 0.00 44.82 3.66
1910 2008 4.967084 TTCCTGCTAAGGTTTACAGTGA 57.033 40.909 0.00 0.00 44.82 3.41
1911 2009 4.967084 TCCTGCTAAGGTTTACAGTGAA 57.033 40.909 0.00 0.00 44.82 3.18
1912 2010 5.298989 TCCTGCTAAGGTTTACAGTGAAA 57.701 39.130 0.00 0.00 44.82 2.69
1913 2011 5.305585 TCCTGCTAAGGTTTACAGTGAAAG 58.694 41.667 0.00 0.00 44.82 2.62
1914 2012 4.083271 CCTGCTAAGGTTTACAGTGAAAGC 60.083 45.833 0.00 3.29 38.96 3.51
1915 2013 3.818773 TGCTAAGGTTTACAGTGAAAGCC 59.181 43.478 0.00 0.00 37.49 4.35
1916 2014 4.072839 GCTAAGGTTTACAGTGAAAGCCT 58.927 43.478 0.00 0.00 37.49 4.58
1917 2015 5.221762 TGCTAAGGTTTACAGTGAAAGCCTA 60.222 40.000 0.00 0.00 37.49 3.93
1918 2016 5.704053 GCTAAGGTTTACAGTGAAAGCCTAA 59.296 40.000 0.00 0.00 37.49 2.69
1919 2017 6.374613 GCTAAGGTTTACAGTGAAAGCCTAAT 59.625 38.462 0.00 0.00 37.49 1.73
1920 2018 6.819397 AAGGTTTACAGTGAAAGCCTAATC 57.181 37.500 0.00 0.00 37.49 1.75
1921 2019 6.128138 AGGTTTACAGTGAAAGCCTAATCT 57.872 37.500 0.00 0.00 37.49 2.40
1922 2020 7.253905 AGGTTTACAGTGAAAGCCTAATCTA 57.746 36.000 0.00 0.00 37.49 1.98
1923 2021 7.686434 AGGTTTACAGTGAAAGCCTAATCTAA 58.314 34.615 0.00 0.00 37.49 2.10
1924 2022 7.824779 AGGTTTACAGTGAAAGCCTAATCTAAG 59.175 37.037 0.00 0.00 37.49 2.18
1925 2023 7.414208 GGTTTACAGTGAAAGCCTAATCTAAGC 60.414 40.741 0.00 0.00 31.96 3.09
1926 2024 5.165961 ACAGTGAAAGCCTAATCTAAGCA 57.834 39.130 0.00 0.00 0.00 3.91
1927 2025 5.560724 ACAGTGAAAGCCTAATCTAAGCAA 58.439 37.500 0.00 0.00 0.00 3.91
1928 2026 6.003950 ACAGTGAAAGCCTAATCTAAGCAAA 58.996 36.000 0.00 0.00 0.00 3.68
1929 2027 6.660949 ACAGTGAAAGCCTAATCTAAGCAAAT 59.339 34.615 0.00 0.00 0.00 2.32
1930 2028 7.829211 ACAGTGAAAGCCTAATCTAAGCAAATA 59.171 33.333 0.00 0.00 0.00 1.40
1931 2029 8.125448 CAGTGAAAGCCTAATCTAAGCAAATAC 58.875 37.037 0.00 0.00 0.00 1.89
1932 2030 8.049721 AGTGAAAGCCTAATCTAAGCAAATACT 58.950 33.333 0.00 0.00 0.00 2.12
1933 2031 8.678199 GTGAAAGCCTAATCTAAGCAAATACTT 58.322 33.333 0.00 0.00 0.00 2.24
1934 2032 8.893727 TGAAAGCCTAATCTAAGCAAATACTTC 58.106 33.333 0.00 0.00 0.00 3.01
1935 2033 8.807948 AAAGCCTAATCTAAGCAAATACTTCA 57.192 30.769 0.00 0.00 0.00 3.02
1936 2034 8.807948 AAGCCTAATCTAAGCAAATACTTCAA 57.192 30.769 0.00 0.00 0.00 2.69
1937 2035 8.986929 AGCCTAATCTAAGCAAATACTTCAAT 57.013 30.769 0.00 0.00 0.00 2.57
1962 2060 7.767250 AAAAAGACTAATCTAAGCAAAGCCT 57.233 32.000 0.00 0.00 33.57 4.58
1963 2061 8.863872 AAAAAGACTAATCTAAGCAAAGCCTA 57.136 30.769 0.00 0.00 33.57 3.93
1964 2062 8.863872 AAAAGACTAATCTAAGCAAAGCCTAA 57.136 30.769 0.00 0.00 33.57 2.69
1965 2063 9.467796 AAAAGACTAATCTAAGCAAAGCCTAAT 57.532 29.630 0.00 0.00 33.57 1.73
1966 2064 8.669946 AAGACTAATCTAAGCAAAGCCTAATC 57.330 34.615 0.00 0.00 33.57 1.75
1967 2065 8.028652 AGACTAATCTAAGCAAAGCCTAATCT 57.971 34.615 0.00 0.00 31.46 2.40
1968 2066 9.148879 AGACTAATCTAAGCAAAGCCTAATCTA 57.851 33.333 0.00 0.00 31.46 1.98
1969 2067 9.765795 GACTAATCTAAGCAAAGCCTAATCTAA 57.234 33.333 0.00 0.00 0.00 2.10
1974 2072 9.686683 ATCTAAGCAAAGCCTAATCTAAAAAGA 57.313 29.630 0.00 0.00 0.00 2.52
1975 2073 8.947115 TCTAAGCAAAGCCTAATCTAAAAAGAC 58.053 33.333 0.00 0.00 0.00 3.01
1976 2074 7.767250 AAGCAAAGCCTAATCTAAAAAGACT 57.233 32.000 0.00 0.00 0.00 3.24
1977 2075 7.767250 AGCAAAGCCTAATCTAAAAAGACTT 57.233 32.000 0.00 0.00 0.00 3.01
1978 2076 8.863872 AGCAAAGCCTAATCTAAAAAGACTTA 57.136 30.769 0.00 0.00 0.00 2.24
1979 2077 8.731605 AGCAAAGCCTAATCTAAAAAGACTTAC 58.268 33.333 0.00 0.00 0.00 2.34
1980 2078 8.512138 GCAAAGCCTAATCTAAAAAGACTTACA 58.488 33.333 0.00 0.00 0.00 2.41
1991 2089 9.211485 TCTAAAAAGACTTACATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
1992 2090 9.211485 CTAAAAAGACTTACATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
1993 2091 7.668525 AAAAGACTTACATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
1995 2093 7.472334 AAGACTTACATTTAGGAACGGAGTA 57.528 36.000 0.00 0.00 45.00 2.59
2096 2194 6.869388 TGCTGACGTATGTAATTGAACAGTTA 59.131 34.615 0.00 0.00 31.70 2.24
2268 2371 6.715344 TTGATTGTATCGACAGTTACCAAC 57.285 37.500 0.00 0.00 36.76 3.77
2269 2372 6.032956 TGATTGTATCGACAGTTACCAACT 57.967 37.500 0.00 0.00 44.06 3.16
2270 2373 7.160547 TGATTGTATCGACAGTTACCAACTA 57.839 36.000 0.00 0.00 40.46 2.24
2271 2374 7.031372 TGATTGTATCGACAGTTACCAACTAC 58.969 38.462 0.00 0.00 40.46 2.73
2272 2375 6.579666 TTGTATCGACAGTTACCAACTACT 57.420 37.500 0.00 0.00 40.46 2.57
2273 2376 6.187125 TGTATCGACAGTTACCAACTACTC 57.813 41.667 0.00 0.00 40.46 2.59
2286 2389 8.747471 GTTACCAACTACTCCTACTTAACTCAT 58.253 37.037 0.00 0.00 0.00 2.90
2429 2628 9.777297 AGCTAGTTACATAGAGTAGGTAAGTAC 57.223 37.037 0.00 0.00 38.85 2.73
2430 2629 9.777297 GCTAGTTACATAGAGTAGGTAAGTACT 57.223 37.037 0.00 0.00 38.85 2.73
2476 2679 2.025793 AGGCATCTCCGCTAGCTAGATA 60.026 50.000 25.15 7.38 40.77 1.98
2550 2753 4.776837 TGCCAATTATTTGACCTGACCAAT 59.223 37.500 0.00 0.00 34.60 3.16
2551 2754 5.954752 TGCCAATTATTTGACCTGACCAATA 59.045 36.000 0.00 0.00 34.60 1.90
2552 2755 6.610830 TGCCAATTATTTGACCTGACCAATAT 59.389 34.615 0.00 0.00 34.60 1.28
2553 2756 7.782168 TGCCAATTATTTGACCTGACCAATATA 59.218 33.333 0.00 0.00 34.60 0.86
2720 2927 7.655328 AGAATCCGTTGATGAGATCTTATTGTC 59.345 37.037 0.95 0.00 0.00 3.18
2792 3002 3.181469 ACAAGAAGTTAGTTGCTCGACCA 60.181 43.478 0.00 0.00 0.00 4.02
2867 3080 3.369147 CGGTGACTGATAGTGAAAGCTTG 59.631 47.826 0.00 0.00 0.00 4.01
2868 3081 3.126000 GGTGACTGATAGTGAAAGCTTGC 59.874 47.826 0.00 0.00 0.00 4.01
2869 3082 3.999663 GTGACTGATAGTGAAAGCTTGCT 59.000 43.478 5.89 4.94 0.00 3.91
2870 3083 5.171476 GTGACTGATAGTGAAAGCTTGCTA 58.829 41.667 5.89 7.02 0.00 3.49
2871 3084 5.290643 GTGACTGATAGTGAAAGCTTGCTAG 59.709 44.000 5.89 0.30 0.00 3.42
2872 3085 5.185828 TGACTGATAGTGAAAGCTTGCTAGA 59.814 40.000 5.89 0.00 0.00 2.43
2873 3086 6.127225 TGACTGATAGTGAAAGCTTGCTAGAT 60.127 38.462 5.89 0.00 0.00 1.98
2874 3087 7.068716 TGACTGATAGTGAAAGCTTGCTAGATA 59.931 37.037 5.89 0.00 0.00 1.98
2875 3088 7.206687 ACTGATAGTGAAAGCTTGCTAGATAC 58.793 38.462 5.89 0.00 0.00 2.24
2897 3110 5.439721 ACAGAGAAGCATTTATATGTGGCA 58.560 37.500 0.00 0.00 29.58 4.92
2904 3117 4.081862 AGCATTTATATGTGGCATGCATCC 60.082 41.667 21.36 6.78 42.30 3.51
2948 3161 0.399233 AAGAGGGGGCTAGCTAGGTG 60.399 60.000 22.10 0.00 0.00 4.00
2978 3194 0.317770 AACTGCGCACAACAATTCCG 60.318 50.000 5.66 0.00 0.00 4.30
3031 3250 4.212004 TCAAAGAACTGTTGCATCTTCTCG 59.788 41.667 0.00 0.00 32.45 4.04
3037 3256 0.642800 GTTGCATCTTCTCGTCGCTC 59.357 55.000 0.00 0.00 0.00 5.03
3053 3272 1.665916 CTCGGTCTGCACAGTGTGG 60.666 63.158 24.24 9.17 33.64 4.17
3217 3436 4.228567 GGCCAGAGCTAGGGTCGC 62.229 72.222 0.00 0.00 39.73 5.19
3236 3455 5.111293 GTCGCCAATCCATTCAAAATCAAT 58.889 37.500 0.00 0.00 0.00 2.57
3254 3473 1.604604 ATGTAGCGTTTGGTTGCAGT 58.395 45.000 0.00 0.00 0.00 4.40
3303 3522 0.326264 GGTGGTCTGTGGCAATCTCT 59.674 55.000 0.00 0.00 0.00 3.10
3355 3574 6.153851 TCTGGAGTGTTCGTTAGGAATATTGA 59.846 38.462 0.00 0.00 36.92 2.57
3373 3592 1.217882 GAATCGCCGATGTAACTGGG 58.782 55.000 0.00 0.00 0.00 4.45
3431 3652 1.596203 GCTGCTGTCAGTGAGTGCA 60.596 57.895 16.18 16.18 42.29 4.57
3433 3654 1.520494 CTGCTGTCAGTGAGTGCATT 58.480 50.000 17.06 0.00 35.61 3.56
3434 3655 1.878088 CTGCTGTCAGTGAGTGCATTT 59.122 47.619 17.06 0.00 35.61 2.32
3436 3657 1.198637 GCTGTCAGTGAGTGCATTTCC 59.801 52.381 11.18 0.00 0.00 3.13
3437 3658 1.462283 CTGTCAGTGAGTGCATTTCCG 59.538 52.381 0.00 0.00 0.00 4.30
3438 3659 1.069978 TGTCAGTGAGTGCATTTCCGA 59.930 47.619 0.00 0.00 0.00 4.55
3439 3660 1.461127 GTCAGTGAGTGCATTTCCGAC 59.539 52.381 0.00 0.00 0.00 4.79
3440 3661 1.069978 TCAGTGAGTGCATTTCCGACA 59.930 47.619 0.00 0.00 0.00 4.35
3441 3662 2.079158 CAGTGAGTGCATTTCCGACAT 58.921 47.619 0.00 0.00 0.00 3.06
3442 3663 2.485426 CAGTGAGTGCATTTCCGACATT 59.515 45.455 0.00 0.00 0.00 2.71
3523 3762 7.776618 TTGGATTGAGAACTAGTAGAAGTGA 57.223 36.000 3.59 0.00 0.00 3.41
3524 3763 7.962995 TGGATTGAGAACTAGTAGAAGTGAT 57.037 36.000 3.59 0.00 0.00 3.06
3525 3764 9.475620 TTGGATTGAGAACTAGTAGAAGTGATA 57.524 33.333 3.59 0.00 0.00 2.15
3526 3765 8.904834 TGGATTGAGAACTAGTAGAAGTGATAC 58.095 37.037 3.59 0.00 0.00 2.24
3527 3766 9.127277 GGATTGAGAACTAGTAGAAGTGATACT 57.873 37.037 3.59 0.00 37.29 2.12
3540 3779 9.595357 GTAGAAGTGATACTTTTACAGTTTTGC 57.405 33.333 14.05 0.00 42.21 3.68
3541 3780 8.451908 AGAAGTGATACTTTTACAGTTTTGCT 57.548 30.769 0.00 0.00 38.80 3.91
3542 3781 9.555727 AGAAGTGATACTTTTACAGTTTTGCTA 57.444 29.630 0.00 0.00 38.80 3.49
3543 3782 9.813080 GAAGTGATACTTTTACAGTTTTGCTAG 57.187 33.333 0.00 0.00 38.80 3.42
3544 3783 9.555727 AAGTGATACTTTTACAGTTTTGCTAGA 57.444 29.630 0.00 0.00 34.11 2.43
3545 3784 9.555727 AGTGATACTTTTACAGTTTTGCTAGAA 57.444 29.630 0.00 0.00 36.88 2.10
3546 3785 9.595357 GTGATACTTTTACAGTTTTGCTAGAAC 57.405 33.333 0.00 0.00 36.88 3.01
3547 3786 9.555727 TGATACTTTTACAGTTTTGCTAGAACT 57.444 29.630 0.00 0.00 37.82 3.01
3549 3788 7.859325 ACTTTTACAGTTTTGCTAGAACTCA 57.141 32.000 0.00 0.00 35.26 3.41
3550 3789 8.451908 ACTTTTACAGTTTTGCTAGAACTCAT 57.548 30.769 0.00 0.00 35.26 2.90
3551 3790 8.560374 ACTTTTACAGTTTTGCTAGAACTCATC 58.440 33.333 0.00 0.00 35.26 2.92
3552 3791 8.677148 TTTTACAGTTTTGCTAGAACTCATCT 57.323 30.769 0.00 0.00 42.48 2.90
3553 3792 9.772973 TTTTACAGTTTTGCTAGAACTCATCTA 57.227 29.630 0.00 0.00 39.71 1.98
3581 3820 8.908786 TGAGATATAATTTGGTCTCATTCACC 57.091 34.615 10.50 0.00 41.40 4.02
3582 3821 8.717717 TGAGATATAATTTGGTCTCATTCACCT 58.282 33.333 10.50 0.00 41.40 4.00
3583 3822 9.566432 GAGATATAATTTGGTCTCATTCACCTT 57.434 33.333 8.11 0.00 37.60 3.50
3584 3823 9.927081 AGATATAATTTGGTCTCATTCACCTTT 57.073 29.630 0.00 0.00 34.66 3.11
3590 3829 7.391148 TTTGGTCTCATTCACCTTTTATAGC 57.609 36.000 0.00 0.00 34.66 2.97
3591 3830 5.437060 TGGTCTCATTCACCTTTTATAGCC 58.563 41.667 0.00 0.00 34.66 3.93
3592 3831 5.045213 TGGTCTCATTCACCTTTTATAGCCA 60.045 40.000 0.00 0.00 34.66 4.75
3593 3832 6.064717 GGTCTCATTCACCTTTTATAGCCAT 58.935 40.000 0.00 0.00 0.00 4.40
3594 3833 6.547510 GGTCTCATTCACCTTTTATAGCCATT 59.452 38.462 0.00 0.00 0.00 3.16
3595 3834 7.420800 GTCTCATTCACCTTTTATAGCCATTG 58.579 38.462 0.00 0.00 0.00 2.82
3596 3835 6.547141 TCTCATTCACCTTTTATAGCCATTGG 59.453 38.462 0.00 0.00 0.00 3.16
3597 3836 6.430864 TCATTCACCTTTTATAGCCATTGGA 58.569 36.000 6.95 0.00 0.00 3.53
3598 3837 7.068702 TCATTCACCTTTTATAGCCATTGGAT 58.931 34.615 6.95 1.78 0.00 3.41
3599 3838 8.224025 TCATTCACCTTTTATAGCCATTGGATA 58.776 33.333 6.95 4.68 0.00 2.59
3600 3839 9.028284 CATTCACCTTTTATAGCCATTGGATAT 57.972 33.333 17.09 17.09 37.99 1.63
3601 3840 8.408043 TTCACCTTTTATAGCCATTGGATATG 57.592 34.615 21.07 8.35 34.94 1.78
3602 3841 7.754624 TCACCTTTTATAGCCATTGGATATGA 58.245 34.615 21.07 11.91 34.94 2.15
3603 3842 8.393259 TCACCTTTTATAGCCATTGGATATGAT 58.607 33.333 21.07 2.11 34.94 2.45
3604 3843 8.464404 CACCTTTTATAGCCATTGGATATGATG 58.536 37.037 21.07 12.10 34.94 3.07
3605 3844 7.123247 ACCTTTTATAGCCATTGGATATGATGC 59.877 37.037 21.07 0.00 34.94 3.91
3606 3845 7.341256 CCTTTTATAGCCATTGGATATGATGCT 59.659 37.037 21.07 4.64 34.94 3.79
3607 3846 9.399797 CTTTTATAGCCATTGGATATGATGCTA 57.600 33.333 21.07 6.59 34.94 3.49
3608 3847 9.925545 TTTTATAGCCATTGGATATGATGCTAT 57.074 29.630 21.07 12.50 34.94 2.97
3612 3851 7.204243 AGCCATTGGATATGATGCTATAAGA 57.796 36.000 6.95 0.00 0.00 2.10
3613 3852 7.813331 AGCCATTGGATATGATGCTATAAGAT 58.187 34.615 6.95 0.00 0.00 2.40
3614 3853 7.720074 AGCCATTGGATATGATGCTATAAGATG 59.280 37.037 6.95 0.00 0.00 2.90
3615 3854 7.521748 GCCATTGGATATGATGCTATAAGATGC 60.522 40.741 6.95 0.00 0.00 3.91
3616 3855 7.307811 CCATTGGATATGATGCTATAAGATGCG 60.308 40.741 0.00 0.00 0.00 4.73
3617 3856 6.225981 TGGATATGATGCTATAAGATGCGT 57.774 37.500 0.00 0.00 0.00 5.24
3618 3857 6.044682 TGGATATGATGCTATAAGATGCGTG 58.955 40.000 0.00 0.00 0.00 5.34
3619 3858 6.045318 GGATATGATGCTATAAGATGCGTGT 58.955 40.000 0.00 0.00 0.00 4.49
3620 3859 6.019237 GGATATGATGCTATAAGATGCGTGTG 60.019 42.308 0.00 0.00 0.00 3.82
3621 3860 4.058721 TGATGCTATAAGATGCGTGTGT 57.941 40.909 0.00 0.00 0.00 3.72
3622 3861 3.803778 TGATGCTATAAGATGCGTGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
3623 3862 3.518634 TGCTATAAGATGCGTGTGTGA 57.481 42.857 0.00 0.00 0.00 3.58
3624 3863 4.058721 TGCTATAAGATGCGTGTGTGAT 57.941 40.909 0.00 0.00 0.00 3.06
3625 3864 3.803778 TGCTATAAGATGCGTGTGTGATG 59.196 43.478 0.00 0.00 0.00 3.07
3626 3865 3.185188 GCTATAAGATGCGTGTGTGATGG 59.815 47.826 0.00 0.00 0.00 3.51
3627 3866 2.022764 TAAGATGCGTGTGTGATGGG 57.977 50.000 0.00 0.00 0.00 4.00
3628 3867 0.677731 AAGATGCGTGTGTGATGGGG 60.678 55.000 0.00 0.00 0.00 4.96
3629 3868 2.045045 ATGCGTGTGTGATGGGGG 60.045 61.111 0.00 0.00 0.00 5.40
3630 3869 2.819984 GATGCGTGTGTGATGGGGGT 62.820 60.000 0.00 0.00 0.00 4.95
3631 3870 2.282180 GCGTGTGTGATGGGGGTT 60.282 61.111 0.00 0.00 0.00 4.11
3632 3871 2.625823 GCGTGTGTGATGGGGGTTG 61.626 63.158 0.00 0.00 0.00 3.77
3633 3872 1.228124 CGTGTGTGATGGGGGTTGT 60.228 57.895 0.00 0.00 0.00 3.32
3634 3873 0.035598 CGTGTGTGATGGGGGTTGTA 59.964 55.000 0.00 0.00 0.00 2.41
3635 3874 1.339631 CGTGTGTGATGGGGGTTGTAT 60.340 52.381 0.00 0.00 0.00 2.29
3636 3875 2.802719 GTGTGTGATGGGGGTTGTATT 58.197 47.619 0.00 0.00 0.00 1.89
3637 3876 3.161866 GTGTGTGATGGGGGTTGTATTT 58.838 45.455 0.00 0.00 0.00 1.40
3638 3877 3.056891 GTGTGTGATGGGGGTTGTATTTG 60.057 47.826 0.00 0.00 0.00 2.32
3639 3878 3.161866 GTGTGATGGGGGTTGTATTTGT 58.838 45.455 0.00 0.00 0.00 2.83
3640 3879 3.576550 GTGTGATGGGGGTTGTATTTGTT 59.423 43.478 0.00 0.00 0.00 2.83
3641 3880 3.829601 TGTGATGGGGGTTGTATTTGTTC 59.170 43.478 0.00 0.00 0.00 3.18
3642 3881 4.086457 GTGATGGGGGTTGTATTTGTTCT 58.914 43.478 0.00 0.00 0.00 3.01
3643 3882 4.526650 GTGATGGGGGTTGTATTTGTTCTT 59.473 41.667 0.00 0.00 0.00 2.52
3644 3883 4.526262 TGATGGGGGTTGTATTTGTTCTTG 59.474 41.667 0.00 0.00 0.00 3.02
3645 3884 3.917300 TGGGGGTTGTATTTGTTCTTGT 58.083 40.909 0.00 0.00 0.00 3.16
3646 3885 4.290942 TGGGGGTTGTATTTGTTCTTGTT 58.709 39.130 0.00 0.00 0.00 2.83
3647 3886 4.717280 TGGGGGTTGTATTTGTTCTTGTTT 59.283 37.500 0.00 0.00 0.00 2.83
3648 3887 5.189934 TGGGGGTTGTATTTGTTCTTGTTTT 59.810 36.000 0.00 0.00 0.00 2.43
3649 3888 5.756347 GGGGGTTGTATTTGTTCTTGTTTTC 59.244 40.000 0.00 0.00 0.00 2.29
3650 3889 6.342111 GGGGTTGTATTTGTTCTTGTTTTCA 58.658 36.000 0.00 0.00 0.00 2.69
3651 3890 6.819146 GGGGTTGTATTTGTTCTTGTTTTCAA 59.181 34.615 0.00 0.00 38.21 2.69
3652 3891 7.334671 GGGGTTGTATTTGTTCTTGTTTTCAAA 59.665 33.333 0.00 0.00 39.47 2.69
3653 3892 8.387354 GGGTTGTATTTGTTCTTGTTTTCAAAG 58.613 33.333 0.00 0.00 39.47 2.77
3654 3893 8.931775 GGTTGTATTTGTTCTTGTTTTCAAAGT 58.068 29.630 0.00 0.00 39.47 2.66
3655 3894 9.739786 GTTGTATTTGTTCTTGTTTTCAAAGTG 57.260 29.630 0.00 0.00 39.47 3.16
3656 3895 9.698309 TTGTATTTGTTCTTGTTTTCAAAGTGA 57.302 25.926 0.00 0.00 39.47 3.41
3657 3896 9.698309 TGTATTTGTTCTTGTTTTCAAAGTGAA 57.302 25.926 0.00 0.00 39.47 3.18
3660 3899 8.600449 TTTGTTCTTGTTTTCAAAGTGAATGT 57.400 26.923 0.00 0.00 39.47 2.71
3661 3900 7.579589 TGTTCTTGTTTTCAAAGTGAATGTG 57.420 32.000 0.00 0.00 39.47 3.21
3662 3901 7.374272 TGTTCTTGTTTTCAAAGTGAATGTGA 58.626 30.769 0.00 0.00 39.47 3.58
3663 3902 7.328249 TGTTCTTGTTTTCAAAGTGAATGTGAC 59.672 33.333 0.00 0.00 39.47 3.67
3664 3903 6.329496 TCTTGTTTTCAAAGTGAATGTGACC 58.671 36.000 0.00 0.00 39.47 4.02
3665 3904 5.651387 TGTTTTCAAAGTGAATGTGACCA 57.349 34.783 0.00 0.00 36.11 4.02
3666 3905 6.030548 TGTTTTCAAAGTGAATGTGACCAA 57.969 33.333 0.00 0.00 36.11 3.67
3667 3906 6.459066 TGTTTTCAAAGTGAATGTGACCAAA 58.541 32.000 0.00 0.00 36.11 3.28
3668 3907 7.102346 TGTTTTCAAAGTGAATGTGACCAAAT 58.898 30.769 0.00 0.00 36.11 2.32
3669 3908 7.605691 TGTTTTCAAAGTGAATGTGACCAAATT 59.394 29.630 0.00 0.00 36.11 1.82
3670 3909 9.092876 GTTTTCAAAGTGAATGTGACCAAATTA 57.907 29.630 0.00 0.00 36.11 1.40
3671 3910 9.829507 TTTTCAAAGTGAATGTGACCAAATTAT 57.170 25.926 0.00 0.00 36.11 1.28
3677 3916 9.685276 AAGTGAATGTGACCAAATTATATCTCA 57.315 29.630 0.00 0.00 0.00 3.27
3678 3917 9.857656 AGTGAATGTGACCAAATTATATCTCAT 57.142 29.630 0.00 0.00 0.00 2.90
3700 3939 7.455058 TCATCTAGATGAGTTCTAGGTACTCC 58.545 42.308 27.93 8.04 44.99 3.85
3701 3940 6.657541 CATCTAGATGAGTTCTAGGTACTCCC 59.342 46.154 25.78 12.05 44.99 4.30
3838 4118 2.105821 TCCAATCCCAGAACGAAACACT 59.894 45.455 0.00 0.00 0.00 3.55
3843 4123 1.867233 CCCAGAACGAAACACTCACTG 59.133 52.381 0.00 0.00 0.00 3.66
4063 4374 1.073722 CTTGGCTGAGGCTGGAACA 59.926 57.895 7.74 0.00 38.73 3.18
4064 4375 1.228245 TTGGCTGAGGCTGGAACAC 60.228 57.895 7.74 0.00 38.73 3.32
4102 4413 1.555075 CGGATCTTCCAAAGGGACAGA 59.445 52.381 0.00 0.00 44.89 3.41
4116 4427 0.179230 GACAGATCGTCGTCGTCGTT 60.179 55.000 11.41 3.57 38.33 3.85
4177 4488 4.094646 ACGATGCCACCGATGCCA 62.095 61.111 0.00 0.00 0.00 4.92
4235 4546 4.828925 GCGGCAGCTCCTCAGACC 62.829 72.222 0.00 0.00 41.01 3.85
4243 4554 1.548357 GCTCCTCAGACCTGCAGGAA 61.548 60.000 39.19 18.91 36.87 3.36
4344 4659 3.270877 CAGATTACGAACCAGGGGAAAG 58.729 50.000 0.00 0.00 0.00 2.62
4345 4660 3.055385 CAGATTACGAACCAGGGGAAAGA 60.055 47.826 0.00 0.00 0.00 2.52
4492 4812 7.888424 TGGGTGTTTAGTTAATTAAGAAAGCC 58.112 34.615 0.00 7.51 0.00 4.35
4495 4815 8.242053 GGTGTTTAGTTAATTAAGAAAGCCTCC 58.758 37.037 0.00 1.60 0.00 4.30
4524 4844 6.664428 TTAGTAGCAGATGTACCATGCATA 57.336 37.500 14.22 4.20 42.45 3.14
4693 5021 1.334160 TGTTGCTTACTCTGGACCGA 58.666 50.000 0.00 0.00 0.00 4.69
4699 5027 2.018515 CTTACTCTGGACCGACCTCTC 58.981 57.143 0.00 0.00 39.86 3.20
4710 5038 1.652012 GACCTCTCGGCTCTGATCG 59.348 63.158 0.00 0.00 0.00 3.69
4728 5056 0.870307 CGCAAACTATACTCGCCGCT 60.870 55.000 0.00 0.00 0.00 5.52
4729 5057 1.598676 CGCAAACTATACTCGCCGCTA 60.599 52.381 0.00 0.00 0.00 4.26
4767 5096 6.260714 ACACAAGATGCATGATATAGCGAAAA 59.739 34.615 2.46 0.00 0.00 2.29
4773 5102 8.663025 AGATGCATGATATAGCGAAAATTGTAG 58.337 33.333 2.46 0.00 0.00 2.74
4781 5110 8.863872 ATATAGCGAAAATTGTAGGGCTAATT 57.136 30.769 0.00 0.00 36.67 1.40
4783 5112 6.619801 AGCGAAAATTGTAGGGCTAATTAG 57.380 37.500 8.20 8.20 0.00 1.73
4785 5114 7.277396 AGCGAAAATTGTAGGGCTAATTAGTA 58.723 34.615 13.91 0.00 0.00 1.82
4786 5115 7.226128 AGCGAAAATTGTAGGGCTAATTAGTAC 59.774 37.037 13.91 9.05 0.00 2.73
4787 5116 7.226128 GCGAAAATTGTAGGGCTAATTAGTACT 59.774 37.037 13.91 13.52 0.00 2.73
4788 5117 9.754382 CGAAAATTGTAGGGCTAATTAGTACTA 57.246 33.333 13.91 12.64 0.00 1.82
4806 5135 9.740239 TTAGTACTAGCATAAATTTGACCGTAG 57.260 33.333 2.23 0.00 0.00 3.51
4850 5179 9.567776 TTGACTAATAATTGAAGTGGTTCTCAA 57.432 29.630 0.00 0.00 33.38 3.02
4880 5209 5.238650 GGTCAGTTGCTTACATGTTACAAGT 59.761 40.000 2.30 6.68 0.00 3.16
5087 5416 4.884164 AGAAAAGCAGCATGATACCTAACC 59.116 41.667 0.00 0.00 39.69 2.85
5088 5417 4.510167 AAAGCAGCATGATACCTAACCT 57.490 40.909 0.00 0.00 39.69 3.50
5154 5487 5.699097 TGTACCTATTCCAACAAAACAGC 57.301 39.130 0.00 0.00 0.00 4.40
5155 5488 4.521256 TGTACCTATTCCAACAAAACAGCC 59.479 41.667 0.00 0.00 0.00 4.85
5156 5489 3.844640 ACCTATTCCAACAAAACAGCCT 58.155 40.909 0.00 0.00 0.00 4.58
5157 5490 4.993028 ACCTATTCCAACAAAACAGCCTA 58.007 39.130 0.00 0.00 0.00 3.93
5158 5491 5.010282 ACCTATTCCAACAAAACAGCCTAG 58.990 41.667 0.00 0.00 0.00 3.02
5159 5492 4.399303 CCTATTCCAACAAAACAGCCTAGG 59.601 45.833 3.67 3.67 0.00 3.02
5160 5493 3.586470 TTCCAACAAAACAGCCTAGGA 57.414 42.857 14.75 0.00 0.00 2.94
5161 5494 3.140325 TCCAACAAAACAGCCTAGGAG 57.860 47.619 14.75 6.53 0.00 3.69
5162 5495 2.708861 TCCAACAAAACAGCCTAGGAGA 59.291 45.455 14.75 0.00 0.00 3.71
5163 5496 3.137544 TCCAACAAAACAGCCTAGGAGAA 59.862 43.478 14.75 0.00 0.00 2.87
5164 5497 3.888930 CCAACAAAACAGCCTAGGAGAAA 59.111 43.478 14.75 0.00 0.00 2.52
5165 5498 4.261614 CCAACAAAACAGCCTAGGAGAAAC 60.262 45.833 14.75 0.00 0.00 2.78
5166 5499 3.487372 ACAAAACAGCCTAGGAGAAACC 58.513 45.455 14.75 0.00 39.35 3.27
5167 5500 2.820197 CAAAACAGCCTAGGAGAAACCC 59.180 50.000 14.75 0.00 40.05 4.11
5168 5501 0.992695 AACAGCCTAGGAGAAACCCC 59.007 55.000 14.75 0.00 40.05 4.95
5169 5502 0.178873 ACAGCCTAGGAGAAACCCCA 60.179 55.000 14.75 0.00 40.05 4.96
5170 5503 0.253327 CAGCCTAGGAGAAACCCCAC 59.747 60.000 14.75 0.00 40.05 4.61
5171 5504 0.914902 AGCCTAGGAGAAACCCCACC 60.915 60.000 14.75 0.00 40.05 4.61
5172 5505 1.923006 GCCTAGGAGAAACCCCACCC 61.923 65.000 14.75 0.00 40.05 4.61
5173 5506 0.253207 CCTAGGAGAAACCCCACCCT 60.253 60.000 1.05 0.00 40.05 4.34
5174 5507 1.009183 CCTAGGAGAAACCCCACCCTA 59.991 57.143 1.05 0.00 40.05 3.53
5175 5508 2.399580 CTAGGAGAAACCCCACCCTAG 58.600 57.143 0.00 0.00 40.10 3.02
5176 5509 0.797579 AGGAGAAACCCCACCCTAGA 59.202 55.000 0.00 0.00 40.05 2.43
5177 5510 1.205055 GGAGAAACCCCACCCTAGAG 58.795 60.000 0.00 0.00 0.00 2.43
5178 5511 1.273666 GGAGAAACCCCACCCTAGAGA 60.274 57.143 0.00 0.00 0.00 3.10
5179 5512 2.547990 GAGAAACCCCACCCTAGAGAA 58.452 52.381 0.00 0.00 0.00 2.87
5180 5513 2.910977 GAGAAACCCCACCCTAGAGAAA 59.089 50.000 0.00 0.00 0.00 2.52
5181 5514 3.329814 GAGAAACCCCACCCTAGAGAAAA 59.670 47.826 0.00 0.00 0.00 2.29
5182 5515 3.923425 AGAAACCCCACCCTAGAGAAAAT 59.077 43.478 0.00 0.00 0.00 1.82
5183 5516 4.357097 AGAAACCCCACCCTAGAGAAAATT 59.643 41.667 0.00 0.00 0.00 1.82
5184 5517 3.739401 ACCCCACCCTAGAGAAAATTG 57.261 47.619 0.00 0.00 0.00 2.32
5185 5518 3.265489 ACCCCACCCTAGAGAAAATTGA 58.735 45.455 0.00 0.00 0.00 2.57
5186 5519 3.858638 ACCCCACCCTAGAGAAAATTGAT 59.141 43.478 0.00 0.00 0.00 2.57
5187 5520 4.079730 ACCCCACCCTAGAGAAAATTGATC 60.080 45.833 0.00 0.00 0.00 2.92
5188 5521 4.464947 CCCACCCTAGAGAAAATTGATCC 58.535 47.826 0.00 0.00 0.00 3.36
5189 5522 4.464947 CCACCCTAGAGAAAATTGATCCC 58.535 47.826 0.00 0.00 0.00 3.85
5190 5523 4.079787 CCACCCTAGAGAAAATTGATCCCA 60.080 45.833 0.00 0.00 0.00 4.37
5191 5524 5.399497 CCACCCTAGAGAAAATTGATCCCAT 60.399 44.000 0.00 0.00 0.00 4.00
5192 5525 6.131961 CACCCTAGAGAAAATTGATCCCATT 58.868 40.000 0.00 0.00 0.00 3.16
5193 5526 6.608808 CACCCTAGAGAAAATTGATCCCATTT 59.391 38.462 0.00 0.00 0.00 2.32
5194 5527 7.124750 CACCCTAGAGAAAATTGATCCCATTTT 59.875 37.037 10.89 10.89 0.00 1.82
5195 5528 7.343057 ACCCTAGAGAAAATTGATCCCATTTTC 59.657 37.037 21.80 21.80 41.83 2.29
5196 5529 7.420800 CCTAGAGAAAATTGATCCCATTTTCG 58.579 38.462 22.43 14.25 44.48 3.46
5197 5530 6.840780 AGAGAAAATTGATCCCATTTTCGT 57.159 33.333 22.43 16.08 44.48 3.85
5198 5531 7.232118 AGAGAAAATTGATCCCATTTTCGTT 57.768 32.000 22.43 16.31 44.48 3.85
5199 5532 8.348285 AGAGAAAATTGATCCCATTTTCGTTA 57.652 30.769 22.43 0.00 44.48 3.18
5200 5533 8.244113 AGAGAAAATTGATCCCATTTTCGTTAC 58.756 33.333 22.43 17.61 44.48 2.50
5201 5534 7.320399 AGAAAATTGATCCCATTTTCGTTACC 58.680 34.615 22.43 8.90 44.48 2.85
5202 5535 6.597832 AAATTGATCCCATTTTCGTTACCA 57.402 33.333 0.00 0.00 0.00 3.25
5203 5536 6.597832 AATTGATCCCATTTTCGTTACCAA 57.402 33.333 0.00 0.00 0.00 3.67
5204 5537 5.379732 TTGATCCCATTTTCGTTACCAAC 57.620 39.130 0.00 0.00 0.00 3.77
5205 5538 4.399219 TGATCCCATTTTCGTTACCAACA 58.601 39.130 0.00 0.00 0.00 3.33
5206 5539 4.216687 TGATCCCATTTTCGTTACCAACAC 59.783 41.667 0.00 0.00 0.00 3.32
5207 5540 2.885894 TCCCATTTTCGTTACCAACACC 59.114 45.455 0.00 0.00 0.00 4.16
5208 5541 2.888414 CCCATTTTCGTTACCAACACCT 59.112 45.455 0.00 0.00 0.00 4.00
5209 5542 3.305064 CCCATTTTCGTTACCAACACCTG 60.305 47.826 0.00 0.00 0.00 4.00
5217 5550 3.574952 CCAACACCTGGGAGGACA 58.425 61.111 0.00 0.00 42.17 4.02
5218 5551 2.078452 CCAACACCTGGGAGGACAT 58.922 57.895 0.00 0.00 42.17 3.06
5219 5552 0.035056 CCAACACCTGGGAGGACATC 60.035 60.000 0.00 0.00 42.17 3.06
5220 5553 0.987294 CAACACCTGGGAGGACATCT 59.013 55.000 0.00 0.00 37.67 2.90
5221 5554 1.352352 CAACACCTGGGAGGACATCTT 59.648 52.381 0.00 0.00 37.67 2.40
5222 5555 1.747444 ACACCTGGGAGGACATCTTT 58.253 50.000 0.00 0.00 37.67 2.52
5223 5556 1.630878 ACACCTGGGAGGACATCTTTC 59.369 52.381 0.00 0.00 37.67 2.62
5224 5557 1.065126 CACCTGGGAGGACATCTTTCC 60.065 57.143 0.00 0.00 37.67 3.13
5225 5558 1.289160 CCTGGGAGGACATCTTTCCA 58.711 55.000 0.00 0.00 37.67 3.53
5226 5559 1.849039 CCTGGGAGGACATCTTTCCAT 59.151 52.381 0.00 0.00 37.67 3.41
5227 5560 2.422519 CCTGGGAGGACATCTTTCCATG 60.423 54.545 0.00 0.00 37.67 3.66
5228 5561 1.064463 TGGGAGGACATCTTTCCATGC 60.064 52.381 0.00 0.00 38.25 4.06
5229 5562 1.303309 GGAGGACATCTTTCCATGCG 58.697 55.000 0.00 0.00 38.25 4.73
5230 5563 1.303309 GAGGACATCTTTCCATGCGG 58.697 55.000 0.00 0.00 38.25 5.69
5231 5564 0.911769 AGGACATCTTTCCATGCGGA 59.088 50.000 0.00 0.00 40.60 5.54
5240 5573 1.974265 TTCCATGCGGAACTTGTTGA 58.026 45.000 0.00 0.00 46.79 3.18
5241 5574 1.234821 TCCATGCGGAACTTGTTGAC 58.765 50.000 0.00 0.00 38.83 3.18
5242 5575 0.110238 CCATGCGGAACTTGTTGACG 60.110 55.000 0.00 0.00 0.00 4.35
5243 5576 0.110238 CATGCGGAACTTGTTGACGG 60.110 55.000 8.50 0.00 0.00 4.79
5244 5577 1.852067 ATGCGGAACTTGTTGACGGC 61.852 55.000 8.50 0.00 0.00 5.68
5245 5578 2.251642 GCGGAACTTGTTGACGGCT 61.252 57.895 0.00 0.00 0.00 5.52
5246 5579 1.860078 CGGAACTTGTTGACGGCTC 59.140 57.895 0.00 0.00 0.00 4.70
5247 5580 0.600255 CGGAACTTGTTGACGGCTCT 60.600 55.000 0.00 0.00 0.00 4.09
5248 5581 1.594331 GGAACTTGTTGACGGCTCTT 58.406 50.000 0.00 0.00 0.00 2.85
5249 5582 1.264288 GGAACTTGTTGACGGCTCTTG 59.736 52.381 0.00 0.00 0.00 3.02
5250 5583 1.264288 GAACTTGTTGACGGCTCTTGG 59.736 52.381 0.00 0.00 0.00 3.61
5251 5584 1.166531 ACTTGTTGACGGCTCTTGGC 61.167 55.000 0.00 0.00 40.90 4.52
5252 5585 1.153066 TTGTTGACGGCTCTTGGCA 60.153 52.632 0.00 0.00 44.01 4.92
5253 5586 1.444119 TTGTTGACGGCTCTTGGCAC 61.444 55.000 0.00 0.00 44.01 5.01
5254 5587 2.664851 TTGACGGCTCTTGGCACG 60.665 61.111 0.00 0.00 44.01 5.34
5255 5588 4.680237 TGACGGCTCTTGGCACGG 62.680 66.667 0.00 0.00 44.01 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.674221 CCAAGCAGTGACAGTAGGAGC 60.674 57.143 0.00 0.00 0.00 4.70
1 2 1.895798 TCCAAGCAGTGACAGTAGGAG 59.104 52.381 0.00 0.00 0.00 3.69
2 3 1.895798 CTCCAAGCAGTGACAGTAGGA 59.104 52.381 0.00 0.00 0.00 2.94
3 4 1.895798 TCTCCAAGCAGTGACAGTAGG 59.104 52.381 0.00 0.00 0.00 3.18
4 5 2.297315 TGTCTCCAAGCAGTGACAGTAG 59.703 50.000 0.00 0.00 34.94 2.57
5 6 2.035961 GTGTCTCCAAGCAGTGACAGTA 59.964 50.000 0.00 0.00 39.65 2.74
6 7 1.123077 TGTCTCCAAGCAGTGACAGT 58.877 50.000 0.00 0.00 34.94 3.55
7 8 1.506493 GTGTCTCCAAGCAGTGACAG 58.494 55.000 0.00 0.00 39.65 3.51
8 9 0.106708 GGTGTCTCCAAGCAGTGACA 59.893 55.000 0.00 0.00 37.14 3.58
9 10 0.394565 AGGTGTCTCCAAGCAGTGAC 59.605 55.000 0.00 0.00 39.02 3.67
10 11 1.618837 GTAGGTGTCTCCAAGCAGTGA 59.381 52.381 0.00 0.00 39.02 3.41
11 12 1.620819 AGTAGGTGTCTCCAAGCAGTG 59.379 52.381 0.00 0.00 39.02 3.66
12 13 1.896465 GAGTAGGTGTCTCCAAGCAGT 59.104 52.381 0.00 0.00 39.02 4.40
13 14 1.895798 TGAGTAGGTGTCTCCAAGCAG 59.104 52.381 0.00 0.00 39.02 4.24
14 15 2.009681 TGAGTAGGTGTCTCCAAGCA 57.990 50.000 0.00 0.00 39.02 3.91
15 16 2.689646 GTTGAGTAGGTGTCTCCAAGC 58.310 52.381 0.00 0.00 39.02 4.01
16 17 2.557056 TCGTTGAGTAGGTGTCTCCAAG 59.443 50.000 0.00 0.00 39.02 3.61
17 18 2.557056 CTCGTTGAGTAGGTGTCTCCAA 59.443 50.000 0.00 0.00 39.02 3.53
18 19 2.160205 CTCGTTGAGTAGGTGTCTCCA 58.840 52.381 0.00 0.00 39.02 3.86
19 20 1.473278 CCTCGTTGAGTAGGTGTCTCC 59.527 57.143 0.00 0.00 0.00 3.71
20 21 2.434428 TCCTCGTTGAGTAGGTGTCTC 58.566 52.381 0.00 0.00 34.30 3.36
21 22 2.581216 TCCTCGTTGAGTAGGTGTCT 57.419 50.000 0.00 0.00 34.30 3.41
22 23 3.018149 AGATCCTCGTTGAGTAGGTGTC 58.982 50.000 0.00 0.00 34.30 3.67
23 24 2.755655 CAGATCCTCGTTGAGTAGGTGT 59.244 50.000 0.00 0.00 34.30 4.16
24 25 2.480416 GCAGATCCTCGTTGAGTAGGTG 60.480 54.545 0.00 0.00 34.30 4.00
25 26 1.751924 GCAGATCCTCGTTGAGTAGGT 59.248 52.381 0.00 0.00 34.30 3.08
26 27 2.028130 AGCAGATCCTCGTTGAGTAGG 58.972 52.381 0.00 0.00 0.00 3.18
27 28 2.797792 GCAGCAGATCCTCGTTGAGTAG 60.798 54.545 0.00 0.00 0.00 2.57
28 29 1.135139 GCAGCAGATCCTCGTTGAGTA 59.865 52.381 0.00 0.00 0.00 2.59
29 30 0.108424 GCAGCAGATCCTCGTTGAGT 60.108 55.000 0.00 0.00 0.00 3.41
30 31 1.144565 CGCAGCAGATCCTCGTTGAG 61.145 60.000 0.00 0.00 0.00 3.02
31 32 1.153765 CGCAGCAGATCCTCGTTGA 60.154 57.895 0.00 0.00 0.00 3.18
32 33 0.179137 TACGCAGCAGATCCTCGTTG 60.179 55.000 0.00 0.00 34.97 4.10
33 34 0.747255 ATACGCAGCAGATCCTCGTT 59.253 50.000 0.00 0.00 34.97 3.85
34 35 0.312416 GATACGCAGCAGATCCTCGT 59.688 55.000 0.00 0.00 37.19 4.18
35 36 0.312102 TGATACGCAGCAGATCCTCG 59.688 55.000 0.00 0.00 0.00 4.63
36 37 1.339610 AGTGATACGCAGCAGATCCTC 59.660 52.381 0.00 0.00 0.00 3.71
37 38 1.339610 GAGTGATACGCAGCAGATCCT 59.660 52.381 0.00 0.00 0.00 3.24
38 39 1.067669 TGAGTGATACGCAGCAGATCC 59.932 52.381 0.00 0.00 0.00 3.36
39 40 2.123342 GTGAGTGATACGCAGCAGATC 58.877 52.381 0.00 0.00 0.00 2.75
40 41 1.478105 TGTGAGTGATACGCAGCAGAT 59.522 47.619 0.00 0.00 0.00 2.90
41 42 0.887933 TGTGAGTGATACGCAGCAGA 59.112 50.000 0.00 0.00 0.00 4.26
42 43 1.713597 TTGTGAGTGATACGCAGCAG 58.286 50.000 0.00 0.00 0.00 4.24
43 44 2.162319 TTTGTGAGTGATACGCAGCA 57.838 45.000 0.00 0.00 0.00 4.41
44 45 3.747099 ATTTTGTGAGTGATACGCAGC 57.253 42.857 0.00 0.00 0.00 5.25
45 46 6.598525 TGTTAATTTTGTGAGTGATACGCAG 58.401 36.000 0.00 0.00 0.00 5.18
46 47 6.425417 TCTGTTAATTTTGTGAGTGATACGCA 59.575 34.615 0.00 0.00 0.00 5.24
47 48 6.827641 TCTGTTAATTTTGTGAGTGATACGC 58.172 36.000 0.00 0.00 0.00 4.42
48 49 9.318041 CTTTCTGTTAATTTTGTGAGTGATACG 57.682 33.333 0.00 0.00 0.00 3.06
51 52 9.736023 GAACTTTCTGTTAATTTTGTGAGTGAT 57.264 29.630 0.00 0.00 39.30 3.06
52 53 8.956426 AGAACTTTCTGTTAATTTTGTGAGTGA 58.044 29.630 0.00 0.00 39.30 3.41
53 54 9.573133 AAGAACTTTCTGTTAATTTTGTGAGTG 57.427 29.630 0.00 0.00 39.30 3.51
71 72 9.877222 TTTAGGGAAAATTCTCCTAAGAACTTT 57.123 29.630 16.05 0.00 42.07 2.66
72 73 9.521841 CTTTAGGGAAAATTCTCCTAAGAACTT 57.478 33.333 16.05 0.00 44.13 2.66
73 74 7.612244 GCTTTAGGGAAAATTCTCCTAAGAACT 59.388 37.037 16.05 0.00 44.13 3.01
74 75 7.612244 AGCTTTAGGGAAAATTCTCCTAAGAAC 59.388 37.037 16.05 12.21 44.13 3.01
75 76 7.611855 CAGCTTTAGGGAAAATTCTCCTAAGAA 59.388 37.037 16.05 0.00 45.36 2.52
76 77 7.112779 CAGCTTTAGGGAAAATTCTCCTAAGA 58.887 38.462 16.05 10.58 39.27 2.10
77 78 6.319911 CCAGCTTTAGGGAAAATTCTCCTAAG 59.680 42.308 16.05 9.90 39.27 2.18
78 79 6.011981 TCCAGCTTTAGGGAAAATTCTCCTAA 60.012 38.462 14.16 14.16 37.84 2.69
79 80 5.491078 TCCAGCTTTAGGGAAAATTCTCCTA 59.509 40.000 0.00 0.00 35.63 2.94
80 81 4.292306 TCCAGCTTTAGGGAAAATTCTCCT 59.708 41.667 0.00 0.00 35.63 3.69
81 82 4.600062 TCCAGCTTTAGGGAAAATTCTCC 58.400 43.478 0.00 0.00 34.41 3.71
82 83 6.782082 ATTCCAGCTTTAGGGAAAATTCTC 57.218 37.500 7.29 0.00 45.63 2.87
83 84 6.070596 CCAATTCCAGCTTTAGGGAAAATTCT 60.071 38.462 7.29 0.00 45.63 2.40
84 85 6.108687 CCAATTCCAGCTTTAGGGAAAATTC 58.891 40.000 7.29 0.00 45.63 2.17
85 86 5.547666 ACCAATTCCAGCTTTAGGGAAAATT 59.452 36.000 7.29 0.00 45.63 1.82
86 87 5.093677 ACCAATTCCAGCTTTAGGGAAAAT 58.906 37.500 7.29 0.00 45.63 1.82
150 151 6.299023 TCGTTCTAGAACAAGTTACGTACA 57.701 37.500 29.95 2.24 41.20 2.90
151 152 7.324616 ACAATCGTTCTAGAACAAGTTACGTAC 59.675 37.037 29.95 4.78 41.20 3.67
152 153 7.362662 ACAATCGTTCTAGAACAAGTTACGTA 58.637 34.615 29.95 9.88 41.20 3.57
153 154 6.211515 ACAATCGTTCTAGAACAAGTTACGT 58.788 36.000 29.95 16.31 41.20 3.57
154 155 6.686130 ACAATCGTTCTAGAACAAGTTACG 57.314 37.500 29.95 17.99 41.20 3.18
172 194 4.574599 AACCTTGAACTGCAGAACAATC 57.425 40.909 23.35 10.54 0.00 2.67
202 224 5.450137 CCGTGAGAATTATACCGAGTGAACT 60.450 44.000 0.00 0.00 0.00 3.01
215 237 5.105513 TGACATGTCTTAGCCGTGAGAATTA 60.106 40.000 25.55 0.00 0.00 1.40
244 266 7.754851 TCCCTCTTTACCTCATTTTTGTAAC 57.245 36.000 0.00 0.00 0.00 2.50
395 418 0.999406 CGTCAAATAGCACCCGTCAG 59.001 55.000 0.00 0.00 0.00 3.51
443 466 1.663161 GCAAGCAACGAGGTTAACTGC 60.663 52.381 5.42 7.10 35.88 4.40
522 545 0.179148 GCCGGTTTATTGCCCTTTCG 60.179 55.000 1.90 0.00 0.00 3.46
523 546 0.179148 CGCCGGTTTATTGCCCTTTC 60.179 55.000 1.90 0.00 0.00 2.62
525 548 2.706834 GCGCCGGTTTATTGCCCTT 61.707 57.895 1.90 0.00 0.00 3.95
526 549 3.138128 GCGCCGGTTTATTGCCCT 61.138 61.111 1.90 0.00 0.00 5.19
719 764 2.510800 AGAGGGAGAGGGTGTAGACTAC 59.489 54.545 5.62 5.62 0.00 2.73
789 834 4.299796 AAAGTGGCGCCCATGGGT 62.300 61.111 31.58 8.20 35.28 4.51
791 836 4.440127 GCAAAGTGGCGCCCATGG 62.440 66.667 26.77 4.14 35.28 3.66
836 881 2.983879 TAAAGGGAGCAGGGCAGGC 61.984 63.158 0.00 0.00 0.00 4.85
893 939 0.395311 TAGCCGCACTAGCTAGGTGT 60.395 55.000 24.35 1.76 41.83 4.16
894 940 0.962489 ATAGCCGCACTAGCTAGGTG 59.038 55.000 24.35 19.02 45.52 4.00
924 970 1.139734 CAGTGGCTCGAGCACGTAT 59.860 57.895 36.27 15.83 44.36 3.06
1461 1524 0.250295 CCAGGAACTTCTTGACGCCA 60.250 55.000 2.50 0.00 34.60 5.69
1541 1604 4.758251 CGTGCATGACCCAGCCGA 62.758 66.667 0.00 0.00 0.00 5.54
1608 1671 9.597681 AATAATTCAGCAATCAAGGAGGATTAT 57.402 29.630 0.00 0.00 35.79 1.28
1610 1673 7.909485 AATAATTCAGCAATCAAGGAGGATT 57.091 32.000 0.00 0.00 37.99 3.01
1638 1701 6.228995 TGGCAATCAATTAAATCAAGTTGCA 58.771 32.000 8.70 0.00 41.64 4.08
1676 1739 3.837213 AATTGACACAGTACATGCAGC 57.163 42.857 0.00 0.00 0.00 5.25
1719 1799 5.909610 GCAGTTGAACAAGTACAAGAACATC 59.090 40.000 0.00 0.00 0.00 3.06
1757 1845 7.249186 AGATTAGAGTAGCACTACTAACACG 57.751 40.000 10.25 0.00 45.63 4.49
1776 1864 6.575244 TCCAAAGCTAAGGATTGGAGATTA 57.425 37.500 11.94 0.00 45.71 1.75
1847 1941 7.118496 AGCAGCTTCAATTATCAGTACTAGT 57.882 36.000 0.00 0.00 0.00 2.57
1877 1975 8.422577 AACCTTAGCAGGAATTTTATTCAAGT 57.577 30.769 0.00 0.00 44.19 3.16
1880 1978 9.303116 TGTAAACCTTAGCAGGAATTTTATTCA 57.697 29.630 0.00 0.00 44.19 2.57
1881 1979 9.788960 CTGTAAACCTTAGCAGGAATTTTATTC 57.211 33.333 0.00 0.00 44.19 1.75
1882 1980 9.309224 ACTGTAAACCTTAGCAGGAATTTTATT 57.691 29.630 0.00 0.00 44.19 1.40
1883 1981 8.739972 CACTGTAAACCTTAGCAGGAATTTTAT 58.260 33.333 0.00 0.00 44.19 1.40
1884 1982 7.940137 TCACTGTAAACCTTAGCAGGAATTTTA 59.060 33.333 0.00 0.00 44.19 1.52
1885 1983 6.775629 TCACTGTAAACCTTAGCAGGAATTTT 59.224 34.615 0.00 0.00 44.19 1.82
1886 1984 6.303839 TCACTGTAAACCTTAGCAGGAATTT 58.696 36.000 0.00 0.00 44.19 1.82
1887 1985 5.876357 TCACTGTAAACCTTAGCAGGAATT 58.124 37.500 0.00 0.00 44.19 2.17
1888 1986 5.499004 TCACTGTAAACCTTAGCAGGAAT 57.501 39.130 0.00 0.00 44.19 3.01
1889 1987 4.967084 TCACTGTAAACCTTAGCAGGAA 57.033 40.909 0.00 0.00 44.19 3.36
1890 1988 4.967084 TTCACTGTAAACCTTAGCAGGA 57.033 40.909 0.00 0.00 44.19 3.86
1892 1990 4.083271 GGCTTTCACTGTAAACCTTAGCAG 60.083 45.833 0.00 0.00 35.31 4.24
1893 1991 3.818773 GGCTTTCACTGTAAACCTTAGCA 59.181 43.478 0.00 0.00 0.00 3.49
1894 1992 4.072839 AGGCTTTCACTGTAAACCTTAGC 58.927 43.478 0.00 0.00 0.00 3.09
1895 1993 7.824779 AGATTAGGCTTTCACTGTAAACCTTAG 59.175 37.037 0.00 0.00 0.00 2.18
1896 1994 7.686434 AGATTAGGCTTTCACTGTAAACCTTA 58.314 34.615 0.00 0.00 0.00 2.69
1897 1995 6.543735 AGATTAGGCTTTCACTGTAAACCTT 58.456 36.000 0.00 0.00 0.00 3.50
1898 1996 6.128138 AGATTAGGCTTTCACTGTAAACCT 57.872 37.500 0.00 0.00 0.00 3.50
1899 1997 7.414208 GCTTAGATTAGGCTTTCACTGTAAACC 60.414 40.741 0.00 0.00 0.00 3.27
1900 1998 7.119262 TGCTTAGATTAGGCTTTCACTGTAAAC 59.881 37.037 0.00 0.00 0.00 2.01
1901 1999 7.165485 TGCTTAGATTAGGCTTTCACTGTAAA 58.835 34.615 0.00 0.00 0.00 2.01
1902 2000 6.707290 TGCTTAGATTAGGCTTTCACTGTAA 58.293 36.000 0.00 0.00 0.00 2.41
1903 2001 6.294361 TGCTTAGATTAGGCTTTCACTGTA 57.706 37.500 0.00 0.00 0.00 2.74
1904 2002 5.165961 TGCTTAGATTAGGCTTTCACTGT 57.834 39.130 0.00 0.00 0.00 3.55
1905 2003 6.500684 TTTGCTTAGATTAGGCTTTCACTG 57.499 37.500 0.00 0.00 0.00 3.66
1906 2004 8.049721 AGTATTTGCTTAGATTAGGCTTTCACT 58.950 33.333 0.00 0.00 0.00 3.41
1907 2005 8.214721 AGTATTTGCTTAGATTAGGCTTTCAC 57.785 34.615 0.00 0.00 0.00 3.18
1908 2006 8.807948 AAGTATTTGCTTAGATTAGGCTTTCA 57.192 30.769 0.00 0.00 0.00 2.69
1909 2007 8.893727 TGAAGTATTTGCTTAGATTAGGCTTTC 58.106 33.333 0.00 0.00 0.00 2.62
1910 2008 8.807948 TGAAGTATTTGCTTAGATTAGGCTTT 57.192 30.769 0.00 0.00 0.00 3.51
1911 2009 8.807948 TTGAAGTATTTGCTTAGATTAGGCTT 57.192 30.769 0.00 0.00 0.00 4.35
1912 2010 8.986929 ATTGAAGTATTTGCTTAGATTAGGCT 57.013 30.769 0.00 0.00 0.00 4.58
1936 2034 9.467796 AGGCTTTGCTTAGATTAGTCTTTTTAT 57.532 29.630 0.00 0.00 35.87 1.40
1937 2035 8.863872 AGGCTTTGCTTAGATTAGTCTTTTTA 57.136 30.769 0.00 0.00 35.87 1.52
1938 2036 7.767250 AGGCTTTGCTTAGATTAGTCTTTTT 57.233 32.000 0.00 0.00 35.87 1.94
1939 2037 8.863872 TTAGGCTTTGCTTAGATTAGTCTTTT 57.136 30.769 0.00 0.00 35.87 2.27
1940 2038 9.114952 GATTAGGCTTTGCTTAGATTAGTCTTT 57.885 33.333 0.00 0.00 35.87 2.52
1941 2039 8.490311 AGATTAGGCTTTGCTTAGATTAGTCTT 58.510 33.333 0.00 0.00 35.87 3.01
1942 2040 8.028652 AGATTAGGCTTTGCTTAGATTAGTCT 57.971 34.615 0.00 0.00 38.52 3.24
1943 2041 9.765795 TTAGATTAGGCTTTGCTTAGATTAGTC 57.234 33.333 0.00 0.00 0.00 2.59
1948 2046 9.686683 TCTTTTTAGATTAGGCTTTGCTTAGAT 57.313 29.630 0.00 0.00 0.00 1.98
1949 2047 8.947115 GTCTTTTTAGATTAGGCTTTGCTTAGA 58.053 33.333 0.00 0.00 0.00 2.10
1950 2048 8.951243 AGTCTTTTTAGATTAGGCTTTGCTTAG 58.049 33.333 0.00 0.00 0.00 2.18
1951 2049 8.863872 AGTCTTTTTAGATTAGGCTTTGCTTA 57.136 30.769 0.00 0.00 0.00 3.09
1952 2050 7.767250 AGTCTTTTTAGATTAGGCTTTGCTT 57.233 32.000 0.00 0.00 0.00 3.91
1953 2051 7.767250 AAGTCTTTTTAGATTAGGCTTTGCT 57.233 32.000 0.00 0.00 30.07 3.91
1954 2052 8.512138 TGTAAGTCTTTTTAGATTAGGCTTTGC 58.488 33.333 0.00 0.00 35.60 3.68
1965 2063 9.211485 CCGTTCCTAAATGTAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 0.00 2.10
1966 2064 9.211485 TCCGTTCCTAAATGTAAGTCTTTTTAG 57.789 33.333 7.75 7.75 0.00 1.85
1967 2065 9.211485 CTCCGTTCCTAAATGTAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
1968 2066 7.718314 ACTCCGTTCCTAAATGTAAGTCTTTTT 59.282 33.333 0.00 0.00 0.00 1.94
1969 2067 7.222161 ACTCCGTTCCTAAATGTAAGTCTTTT 58.778 34.615 0.00 0.00 0.00 2.27
1970 2068 6.766429 ACTCCGTTCCTAAATGTAAGTCTTT 58.234 36.000 0.00 0.00 0.00 2.52
1971 2069 6.356186 ACTCCGTTCCTAAATGTAAGTCTT 57.644 37.500 0.00 0.00 0.00 3.01
1972 2070 5.997384 ACTCCGTTCCTAAATGTAAGTCT 57.003 39.130 0.00 0.00 0.00 3.24
1973 2071 9.978044 ATTATACTCCGTTCCTAAATGTAAGTC 57.022 33.333 0.00 0.00 0.00 3.01
1986 2084 9.874215 GCCTAAACATAAAATTATACTCCGTTC 57.126 33.333 0.00 0.00 0.00 3.95
1987 2085 9.623000 AGCCTAAACATAAAATTATACTCCGTT 57.377 29.630 0.00 0.00 0.00 4.44
1988 2086 9.623000 AAGCCTAAACATAAAATTATACTCCGT 57.377 29.630 0.00 0.00 0.00 4.69
2082 2180 6.743575 ACTCCAGCATAACTGTTCAATTAC 57.256 37.500 0.00 0.00 45.68 1.89
2083 2181 7.168219 AGAACTCCAGCATAACTGTTCAATTA 58.832 34.615 0.00 0.00 45.68 1.40
2154 2253 9.018582 AGTTAACTAGCTAAGTAATATACCCCG 57.981 37.037 6.26 0.00 37.50 5.73
2183 2282 1.332195 ACGCATGATCCTGCTAGCTA 58.668 50.000 17.23 1.62 40.06 3.32
2184 2283 1.000283 GTACGCATGATCCTGCTAGCT 60.000 52.381 17.23 0.00 40.06 3.32
2185 2284 1.269778 TGTACGCATGATCCTGCTAGC 60.270 52.381 18.99 8.10 40.06 3.42
2269 2372 9.388506 GCCGTATATATGAGTTAAGTAGGAGTA 57.611 37.037 3.36 0.00 0.00 2.59
2270 2373 7.065563 CGCCGTATATATGAGTTAAGTAGGAGT 59.934 40.741 3.36 0.00 0.00 3.85
2271 2374 7.408123 CGCCGTATATATGAGTTAAGTAGGAG 58.592 42.308 3.36 0.00 0.00 3.69
2272 2375 6.183360 GCGCCGTATATATGAGTTAAGTAGGA 60.183 42.308 0.00 0.00 0.00 2.94
2273 2376 5.970023 GCGCCGTATATATGAGTTAAGTAGG 59.030 44.000 0.00 0.00 0.00 3.18
2286 2389 1.828595 ACATCATGGGCGCCGTATATA 59.171 47.619 22.54 9.39 0.00 0.86
2431 2630 9.854668 CCTATGTGTCCTATATATGTAGCTACT 57.145 37.037 23.84 12.28 0.00 2.57
2432 2631 8.569641 GCCTATGTGTCCTATATATGTAGCTAC 58.430 40.741 17.30 17.30 0.00 3.58
2433 2632 8.279361 TGCCTATGTGTCCTATATATGTAGCTA 58.721 37.037 1.07 0.00 0.00 3.32
2434 2633 7.126061 TGCCTATGTGTCCTATATATGTAGCT 58.874 38.462 1.07 0.00 0.00 3.32
2476 2679 6.179906 ACTATCTTGCTTGCAGGTATATGT 57.820 37.500 4.72 0.00 0.00 2.29
2550 2753 3.636764 CGATCCGTCCATCCATCCATATA 59.363 47.826 0.00 0.00 0.00 0.86
2551 2754 2.432146 CGATCCGTCCATCCATCCATAT 59.568 50.000 0.00 0.00 0.00 1.78
2552 2755 1.824852 CGATCCGTCCATCCATCCATA 59.175 52.381 0.00 0.00 0.00 2.74
2553 2756 0.610174 CGATCCGTCCATCCATCCAT 59.390 55.000 0.00 0.00 0.00 3.41
2720 2927 4.385825 TGCAGGTTAGCTAATTAATCCCG 58.614 43.478 9.88 0.00 34.99 5.14
2792 3002 6.821665 GCCGGTGATGGTGTATATGTAAATAT 59.178 38.462 1.90 0.00 0.00 1.28
2867 3080 9.868277 ACATATAAATGCTTCTCTGTATCTAGC 57.132 33.333 0.00 0.00 36.50 3.42
2870 3083 7.605691 GCCACATATAAATGCTTCTCTGTATCT 59.394 37.037 0.00 0.00 36.50 1.98
2871 3084 7.388776 TGCCACATATAAATGCTTCTCTGTATC 59.611 37.037 0.00 0.00 36.50 2.24
2872 3085 7.226441 TGCCACATATAAATGCTTCTCTGTAT 58.774 34.615 0.00 0.00 36.50 2.29
2873 3086 6.591001 TGCCACATATAAATGCTTCTCTGTA 58.409 36.000 0.00 0.00 36.50 2.74
2874 3087 5.439721 TGCCACATATAAATGCTTCTCTGT 58.560 37.500 0.00 0.00 36.50 3.41
2875 3088 6.379386 CATGCCACATATAAATGCTTCTCTG 58.621 40.000 0.00 0.00 36.50 3.35
2897 3110 1.349026 CCGGATACAAGGAGGATGCAT 59.651 52.381 0.00 0.00 0.00 3.96
2904 3117 3.906720 TTCCTTTCCGGATACAAGGAG 57.093 47.619 27.18 9.38 45.45 3.69
2978 3194 0.593128 CTTGCAACAGTAGTGGCCAC 59.407 55.000 29.22 29.22 44.45 5.01
3031 3250 2.807045 CTGTGCAGACCGAGCGAC 60.807 66.667 0.00 0.00 33.85 5.19
3037 3256 3.349006 GCCACACTGTGCAGACCG 61.349 66.667 7.90 0.00 31.34 4.79
3053 3272 3.191078 AGATGAGCATTGACAGTAGGC 57.809 47.619 0.00 0.00 0.00 3.93
3087 3306 5.250543 TCTCTCATTCCATTACCAAACAGGA 59.749 40.000 0.00 0.00 41.22 3.86
3096 3315 6.060788 AGAAGCCAATCTCTCATTCCATTAC 58.939 40.000 0.00 0.00 0.00 1.89
3217 3436 6.199531 CGCTACATTGATTTTGAATGGATTGG 59.800 38.462 0.00 0.00 35.48 3.16
3236 3455 2.242047 TACTGCAACCAAACGCTACA 57.758 45.000 0.00 0.00 0.00 2.74
3322 3541 0.445436 GAACACTCCAGATTGCTGCG 59.555 55.000 0.00 0.00 40.91 5.18
3355 3574 0.539986 ACCCAGTTACATCGGCGATT 59.460 50.000 21.54 13.96 0.00 3.34
3373 3592 4.328169 CCTAATCCAACGAACTAACGGAAC 59.672 45.833 0.00 0.00 37.61 3.62
3523 3762 9.555727 TGAGTTCTAGCAAAACTGTAAAAGTAT 57.444 29.630 0.32 0.00 38.56 2.12
3524 3763 8.951787 TGAGTTCTAGCAAAACTGTAAAAGTA 57.048 30.769 0.32 0.00 38.56 2.24
3525 3764 7.859325 TGAGTTCTAGCAAAACTGTAAAAGT 57.141 32.000 0.32 0.00 42.60 2.66
3526 3765 8.778358 AGATGAGTTCTAGCAAAACTGTAAAAG 58.222 33.333 0.32 0.00 37.10 2.27
3527 3766 8.677148 AGATGAGTTCTAGCAAAACTGTAAAA 57.323 30.769 0.32 0.00 37.10 1.52
3528 3767 9.424319 CTAGATGAGTTCTAGCAAAACTGTAAA 57.576 33.333 0.32 0.00 45.63 2.01
3529 3768 8.988064 CTAGATGAGTTCTAGCAAAACTGTAA 57.012 34.615 0.32 0.00 45.63 2.41
3557 3796 9.566432 AAGGTGAATGAGACCAAATTATATCTC 57.434 33.333 0.00 6.03 38.46 2.75
3558 3797 9.927081 AAAGGTGAATGAGACCAAATTATATCT 57.073 29.630 0.00 0.00 35.76 1.98
3564 3803 8.470002 GCTATAAAAGGTGAATGAGACCAAATT 58.530 33.333 0.00 0.00 35.76 1.82
3565 3804 7.068716 GGCTATAAAAGGTGAATGAGACCAAAT 59.931 37.037 0.00 0.00 35.76 2.32
3566 3805 6.377146 GGCTATAAAAGGTGAATGAGACCAAA 59.623 38.462 0.00 0.00 35.76 3.28
3567 3806 5.885912 GGCTATAAAAGGTGAATGAGACCAA 59.114 40.000 0.00 0.00 35.76 3.67
3568 3807 5.045213 TGGCTATAAAAGGTGAATGAGACCA 60.045 40.000 0.00 0.00 35.76 4.02
3569 3808 5.437060 TGGCTATAAAAGGTGAATGAGACC 58.563 41.667 0.00 0.00 0.00 3.85
3570 3809 7.420800 CAATGGCTATAAAAGGTGAATGAGAC 58.579 38.462 0.00 0.00 0.00 3.36
3571 3810 6.547141 CCAATGGCTATAAAAGGTGAATGAGA 59.453 38.462 0.00 0.00 0.00 3.27
3572 3811 6.547141 TCCAATGGCTATAAAAGGTGAATGAG 59.453 38.462 0.00 0.00 0.00 2.90
3573 3812 6.430864 TCCAATGGCTATAAAAGGTGAATGA 58.569 36.000 0.00 0.00 0.00 2.57
3574 3813 6.713762 TCCAATGGCTATAAAAGGTGAATG 57.286 37.500 0.00 0.00 0.00 2.67
3575 3814 9.028284 CATATCCAATGGCTATAAAAGGTGAAT 57.972 33.333 0.00 0.00 0.00 2.57
3576 3815 8.224025 TCATATCCAATGGCTATAAAAGGTGAA 58.776 33.333 0.00 0.00 0.00 3.18
3577 3816 7.754624 TCATATCCAATGGCTATAAAAGGTGA 58.245 34.615 0.00 0.00 0.00 4.02
3578 3817 8.464404 CATCATATCCAATGGCTATAAAAGGTG 58.536 37.037 0.00 0.00 0.00 4.00
3579 3818 7.123247 GCATCATATCCAATGGCTATAAAAGGT 59.877 37.037 0.00 0.00 0.00 3.50
3580 3819 7.341256 AGCATCATATCCAATGGCTATAAAAGG 59.659 37.037 0.00 0.00 0.00 3.11
3581 3820 8.289939 AGCATCATATCCAATGGCTATAAAAG 57.710 34.615 0.00 0.00 0.00 2.27
3582 3821 9.925545 ATAGCATCATATCCAATGGCTATAAAA 57.074 29.630 0.00 0.00 0.00 1.52
3586 3825 8.942033 TCTTATAGCATCATATCCAATGGCTAT 58.058 33.333 0.00 0.00 32.32 2.97
3587 3826 8.322905 TCTTATAGCATCATATCCAATGGCTA 57.677 34.615 0.00 0.00 0.00 3.93
3588 3827 7.204243 TCTTATAGCATCATATCCAATGGCT 57.796 36.000 0.00 0.00 0.00 4.75
3589 3828 7.521748 GCATCTTATAGCATCATATCCAATGGC 60.522 40.741 0.00 0.00 0.00 4.40
3590 3829 7.307811 CGCATCTTATAGCATCATATCCAATGG 60.308 40.741 0.00 0.00 0.00 3.16
3591 3830 7.226128 ACGCATCTTATAGCATCATATCCAATG 59.774 37.037 0.00 0.00 0.00 2.82
3592 3831 7.226128 CACGCATCTTATAGCATCATATCCAAT 59.774 37.037 0.00 0.00 0.00 3.16
3593 3832 6.536224 CACGCATCTTATAGCATCATATCCAA 59.464 38.462 0.00 0.00 0.00 3.53
3594 3833 6.044682 CACGCATCTTATAGCATCATATCCA 58.955 40.000 0.00 0.00 0.00 3.41
3595 3834 6.019237 CACACGCATCTTATAGCATCATATCC 60.019 42.308 0.00 0.00 0.00 2.59
3596 3835 6.533012 ACACACGCATCTTATAGCATCATATC 59.467 38.462 0.00 0.00 0.00 1.63
3597 3836 6.312180 CACACACGCATCTTATAGCATCATAT 59.688 38.462 0.00 0.00 0.00 1.78
3598 3837 5.634859 CACACACGCATCTTATAGCATCATA 59.365 40.000 0.00 0.00 0.00 2.15
3599 3838 4.450080 CACACACGCATCTTATAGCATCAT 59.550 41.667 0.00 0.00 0.00 2.45
3600 3839 3.803778 CACACACGCATCTTATAGCATCA 59.196 43.478 0.00 0.00 0.00 3.07
3601 3840 4.051237 TCACACACGCATCTTATAGCATC 58.949 43.478 0.00 0.00 0.00 3.91
3602 3841 4.058721 TCACACACGCATCTTATAGCAT 57.941 40.909 0.00 0.00 0.00 3.79
3603 3842 3.518634 TCACACACGCATCTTATAGCA 57.481 42.857 0.00 0.00 0.00 3.49
3604 3843 3.185188 CCATCACACACGCATCTTATAGC 59.815 47.826 0.00 0.00 0.00 2.97
3605 3844 3.742882 CCCATCACACACGCATCTTATAG 59.257 47.826 0.00 0.00 0.00 1.31
3606 3845 3.494223 CCCCATCACACACGCATCTTATA 60.494 47.826 0.00 0.00 0.00 0.98
3607 3846 2.564771 CCCATCACACACGCATCTTAT 58.435 47.619 0.00 0.00 0.00 1.73
3608 3847 1.406751 CCCCATCACACACGCATCTTA 60.407 52.381 0.00 0.00 0.00 2.10
3609 3848 0.677731 CCCCATCACACACGCATCTT 60.678 55.000 0.00 0.00 0.00 2.40
3610 3849 1.078214 CCCCATCACACACGCATCT 60.078 57.895 0.00 0.00 0.00 2.90
3611 3850 2.114670 CCCCCATCACACACGCATC 61.115 63.158 0.00 0.00 0.00 3.91
3612 3851 2.045045 CCCCCATCACACACGCAT 60.045 61.111 0.00 0.00 0.00 4.73
3613 3852 3.126703 AACCCCCATCACACACGCA 62.127 57.895 0.00 0.00 0.00 5.24
3614 3853 2.282180 AACCCCCATCACACACGC 60.282 61.111 0.00 0.00 0.00 5.34
3615 3854 0.035598 TACAACCCCCATCACACACG 59.964 55.000 0.00 0.00 0.00 4.49
3616 3855 2.507407 ATACAACCCCCATCACACAC 57.493 50.000 0.00 0.00 0.00 3.82
3617 3856 3.161067 CAAATACAACCCCCATCACACA 58.839 45.455 0.00 0.00 0.00 3.72
3618 3857 3.161866 ACAAATACAACCCCCATCACAC 58.838 45.455 0.00 0.00 0.00 3.82
3619 3858 3.534357 ACAAATACAACCCCCATCACA 57.466 42.857 0.00 0.00 0.00 3.58
3620 3859 4.086457 AGAACAAATACAACCCCCATCAC 58.914 43.478 0.00 0.00 0.00 3.06
3621 3860 4.396357 AGAACAAATACAACCCCCATCA 57.604 40.909 0.00 0.00 0.00 3.07
3622 3861 4.526650 ACAAGAACAAATACAACCCCCATC 59.473 41.667 0.00 0.00 0.00 3.51
3623 3862 4.488770 ACAAGAACAAATACAACCCCCAT 58.511 39.130 0.00 0.00 0.00 4.00
3624 3863 3.917300 ACAAGAACAAATACAACCCCCA 58.083 40.909 0.00 0.00 0.00 4.96
3625 3864 4.948341 AACAAGAACAAATACAACCCCC 57.052 40.909 0.00 0.00 0.00 5.40
3626 3865 6.342111 TGAAAACAAGAACAAATACAACCCC 58.658 36.000 0.00 0.00 0.00 4.95
3627 3866 7.835634 TTGAAAACAAGAACAAATACAACCC 57.164 32.000 0.00 0.00 0.00 4.11
3628 3867 8.931775 ACTTTGAAAACAAGAACAAATACAACC 58.068 29.630 0.00 0.00 33.01 3.77
3629 3868 9.739786 CACTTTGAAAACAAGAACAAATACAAC 57.260 29.630 0.00 0.00 33.01 3.32
3630 3869 9.698309 TCACTTTGAAAACAAGAACAAATACAA 57.302 25.926 0.00 0.00 33.01 2.41
3631 3870 9.698309 TTCACTTTGAAAACAAGAACAAATACA 57.302 25.926 0.00 0.00 32.71 2.29
3634 3873 9.218440 ACATTCACTTTGAAAACAAGAACAAAT 57.782 25.926 0.00 0.00 40.12 2.32
3635 3874 8.494347 CACATTCACTTTGAAAACAAGAACAAA 58.506 29.630 0.00 0.00 40.12 2.83
3636 3875 7.869937 TCACATTCACTTTGAAAACAAGAACAA 59.130 29.630 0.00 0.00 40.12 2.83
3637 3876 7.328249 GTCACATTCACTTTGAAAACAAGAACA 59.672 33.333 0.00 0.00 40.12 3.18
3638 3877 7.201435 GGTCACATTCACTTTGAAAACAAGAAC 60.201 37.037 0.00 0.00 40.12 3.01
3639 3878 6.811170 GGTCACATTCACTTTGAAAACAAGAA 59.189 34.615 0.00 0.00 40.12 2.52
3640 3879 6.071672 TGGTCACATTCACTTTGAAAACAAGA 60.072 34.615 0.00 0.00 40.12 3.02
3641 3880 6.098679 TGGTCACATTCACTTTGAAAACAAG 58.901 36.000 0.00 0.00 40.12 3.16
3642 3881 6.030548 TGGTCACATTCACTTTGAAAACAA 57.969 33.333 0.00 0.00 40.12 2.83
3643 3882 5.651387 TGGTCACATTCACTTTGAAAACA 57.349 34.783 0.00 0.00 40.12 2.83
3644 3883 6.959671 TTTGGTCACATTCACTTTGAAAAC 57.040 33.333 0.00 0.00 40.12 2.43
3645 3884 9.829507 ATAATTTGGTCACATTCACTTTGAAAA 57.170 25.926 0.00 0.00 40.12 2.29
3651 3890 9.685276 TGAGATATAATTTGGTCACATTCACTT 57.315 29.630 0.00 0.00 0.00 3.16
3652 3891 9.857656 ATGAGATATAATTTGGTCACATTCACT 57.142 29.630 0.00 0.00 0.00 3.41
3680 3919 5.988865 TGGGAGTACCTAGAACTCATCTA 57.011 43.478 20.28 5.84 44.25 1.98
3681 3920 4.883021 TGGGAGTACCTAGAACTCATCT 57.117 45.455 20.28 0.00 44.25 2.90
3682 3921 6.308566 AGTATGGGAGTACCTAGAACTCATC 58.691 44.000 20.28 14.32 44.25 2.92
3683 3922 6.282568 AGTATGGGAGTACCTAGAACTCAT 57.717 41.667 20.28 12.63 44.25 2.90
3684 3923 5.728937 AGTATGGGAGTACCTAGAACTCA 57.271 43.478 20.28 7.79 44.25 3.41
3685 3924 7.421087 AAAAGTATGGGAGTACCTAGAACTC 57.579 40.000 13.84 13.84 42.19 3.01
3686 3925 8.756927 GTTAAAAGTATGGGAGTACCTAGAACT 58.243 37.037 0.00 0.00 41.11 3.01
3687 3926 7.984050 GGTTAAAAGTATGGGAGTACCTAGAAC 59.016 40.741 0.00 0.00 41.11 3.01
3688 3927 7.679453 TGGTTAAAAGTATGGGAGTACCTAGAA 59.321 37.037 0.00 0.00 41.11 2.10
3689 3928 7.191210 TGGTTAAAAGTATGGGAGTACCTAGA 58.809 38.462 0.00 0.00 41.11 2.43
3690 3929 7.343833 TCTGGTTAAAAGTATGGGAGTACCTAG 59.656 40.741 0.00 0.00 41.11 3.02
3691 3930 7.191210 TCTGGTTAAAAGTATGGGAGTACCTA 58.809 38.462 0.00 0.00 41.11 3.08
3692 3931 6.027482 TCTGGTTAAAAGTATGGGAGTACCT 58.973 40.000 0.00 0.00 41.11 3.08
3693 3932 6.303903 TCTGGTTAAAAGTATGGGAGTACC 57.696 41.667 0.00 0.00 40.81 3.34
3694 3933 8.625786 TTTTCTGGTTAAAAGTATGGGAGTAC 57.374 34.615 0.00 0.00 0.00 2.73
3695 3934 9.816787 AATTTTCTGGTTAAAAGTATGGGAGTA 57.183 29.630 0.00 0.00 32.20 2.59
3696 3935 8.721133 AATTTTCTGGTTAAAAGTATGGGAGT 57.279 30.769 0.00 0.00 32.20 3.85
3838 4118 5.221382 ACGCTCTTACTAAAAGAACCAGTGA 60.221 40.000 0.00 0.00 0.00 3.41
3843 4123 4.233005 ACGACGCTCTTACTAAAAGAACC 58.767 43.478 0.00 0.00 0.00 3.62
3879 4182 5.769484 ATGACAATACTACTACTCGTGGG 57.231 43.478 0.00 0.00 0.00 4.61
3880 4183 8.404000 AGTAAATGACAATACTACTACTCGTGG 58.596 37.037 3.21 0.00 30.78 4.94
4063 4374 0.396811 GGCACACTACCCACTCTTGT 59.603 55.000 0.00 0.00 0.00 3.16
4064 4375 0.670546 CGGCACACTACCCACTCTTG 60.671 60.000 0.00 0.00 0.00 3.02
4102 4413 0.041047 TGTTGAACGACGACGACGAT 60.041 50.000 25.15 14.38 42.66 3.73
4116 4427 1.890041 CCCGGCGTTTGTCTGTTGA 60.890 57.895 6.01 0.00 0.00 3.18
4177 4488 2.104331 GACGACGATGGCGATGGT 59.896 61.111 0.00 0.00 41.64 3.55
4186 4497 1.136984 GCTGGAAGACGACGACGAT 59.863 57.895 15.32 0.00 43.06 3.73
4231 4542 4.987122 ACCTCTTCCTGCAGGTCT 57.013 55.556 31.58 6.70 38.83 3.85
4235 4546 0.391395 CTGCTGACCTCTTCCTGCAG 60.391 60.000 6.78 6.78 41.38 4.41
4243 4554 0.896923 CTTCTCAGCTGCTGACCTCT 59.103 55.000 27.35 0.00 35.39 3.69
4344 4659 5.776744 AGCAAGAAAAGGACACATCATTTC 58.223 37.500 0.00 0.00 37.85 2.17
4345 4660 5.279156 GGAGCAAGAAAAGGACACATCATTT 60.279 40.000 0.00 0.00 40.47 2.32
4454 4774 1.909781 CACCCAATGCCTGGTTGCT 60.910 57.895 0.00 0.00 44.76 3.91
4476 4796 7.259088 TCAGAGGAGGCTTTCTTAATTAACT 57.741 36.000 0.00 0.00 0.00 2.24
4492 4812 6.072175 GGTACATCTGCTACTAATCAGAGGAG 60.072 46.154 10.28 0.00 41.92 3.69
4495 4815 6.641169 TGGTACATCTGCTACTAATCAGAG 57.359 41.667 0.00 0.00 41.95 3.35
4524 4844 8.736244 TGCTACGTATACATACACATATCACAT 58.264 33.333 3.32 0.00 32.87 3.21
4582 4907 2.028476 ACAGCTCGCAGGTTATTACACA 60.028 45.455 0.00 0.00 0.00 3.72
4631 4957 5.205565 CAGTAAAAACGAGAAGGCTTTCAC 58.794 41.667 11.53 3.52 35.70 3.18
4699 5027 1.858091 ATAGTTTGCGATCAGAGCCG 58.142 50.000 0.00 0.00 0.00 5.52
4707 5035 1.767289 CGGCGAGTATAGTTTGCGAT 58.233 50.000 0.00 0.00 0.00 4.58
4710 5038 2.129823 TAGCGGCGAGTATAGTTTGC 57.870 50.000 12.98 0.00 0.00 3.68
4767 5096 7.850935 TGCTAGTACTAATTAGCCCTACAAT 57.149 36.000 12.54 0.00 39.53 2.71
4781 5110 8.355169 CCTACGGTCAAATTTATGCTAGTACTA 58.645 37.037 1.89 1.89 0.00 1.82
4783 5112 6.423001 CCCTACGGTCAAATTTATGCTAGTAC 59.577 42.308 0.00 0.00 0.00 2.73
4785 5114 5.365619 CCCTACGGTCAAATTTATGCTAGT 58.634 41.667 0.00 0.00 0.00 2.57
4786 5115 4.755123 CCCCTACGGTCAAATTTATGCTAG 59.245 45.833 0.00 0.00 0.00 3.42
4787 5116 4.164604 ACCCCTACGGTCAAATTTATGCTA 59.835 41.667 0.00 0.00 43.58 3.49
4788 5117 3.053917 ACCCCTACGGTCAAATTTATGCT 60.054 43.478 0.00 0.00 43.58 3.79
4801 5130 4.648307 ACTATCAAGAGTTAACCCCTACGG 59.352 45.833 0.88 0.00 37.81 4.02
4803 5132 7.040494 GTCAACTATCAAGAGTTAACCCCTAC 58.960 42.308 0.88 0.00 37.57 3.18
4806 5135 6.051179 AGTCAACTATCAAGAGTTAACCCC 57.949 41.667 0.88 0.00 37.57 4.95
4850 5179 5.072741 ACATGTAAGCAACTGACCTCAAAT 58.927 37.500 0.00 0.00 0.00 2.32
4930 5259 4.379339 TTGGCCAAGACACAACTTTTAC 57.621 40.909 16.05 0.00 0.00 2.01
4977 5306 5.790593 ACGTGATAAAATATAGCCGACCAT 58.209 37.500 0.00 0.00 0.00 3.55
5036 5365 1.487231 GCGTATGTAAGCGGCATCG 59.513 57.895 1.45 0.00 39.81 3.84
5145 5478 3.487372 GGTTTCTCCTAGGCTGTTTTGT 58.513 45.455 2.96 0.00 0.00 2.83
5154 5487 0.253207 AGGGTGGGGTTTCTCCTAGG 60.253 60.000 0.82 0.82 36.25 3.02
5155 5488 2.023307 TCTAGGGTGGGGTTTCTCCTAG 60.023 54.545 8.06 8.06 45.03 3.02
5156 5489 2.013006 TCTAGGGTGGGGTTTCTCCTA 58.987 52.381 0.00 0.00 36.25 2.94
5157 5490 0.797579 TCTAGGGTGGGGTTTCTCCT 59.202 55.000 0.00 0.00 36.25 3.69
5158 5491 1.205055 CTCTAGGGTGGGGTTTCTCC 58.795 60.000 0.00 0.00 0.00 3.71
5159 5492 2.249309 TCTCTAGGGTGGGGTTTCTC 57.751 55.000 0.00 0.00 0.00 2.87
5160 5493 2.735259 TTCTCTAGGGTGGGGTTTCT 57.265 50.000 0.00 0.00 0.00 2.52
5161 5494 3.801307 TTTTCTCTAGGGTGGGGTTTC 57.199 47.619 0.00 0.00 0.00 2.78
5162 5495 4.107311 TCAATTTTCTCTAGGGTGGGGTTT 59.893 41.667 0.00 0.00 0.00 3.27
5163 5496 3.660669 TCAATTTTCTCTAGGGTGGGGTT 59.339 43.478 0.00 0.00 0.00 4.11
5164 5497 3.265489 TCAATTTTCTCTAGGGTGGGGT 58.735 45.455 0.00 0.00 0.00 4.95
5165 5498 4.464947 GATCAATTTTCTCTAGGGTGGGG 58.535 47.826 0.00 0.00 0.00 4.96
5166 5499 4.464947 GGATCAATTTTCTCTAGGGTGGG 58.535 47.826 0.00 0.00 0.00 4.61
5167 5500 4.079787 TGGGATCAATTTTCTCTAGGGTGG 60.080 45.833 0.00 0.00 0.00 4.61
5168 5501 5.116084 TGGGATCAATTTTCTCTAGGGTG 57.884 43.478 0.00 0.00 0.00 4.61
5169 5502 6.347061 AATGGGATCAATTTTCTCTAGGGT 57.653 37.500 0.00 0.00 0.00 4.34
5170 5503 7.469181 CGAAAATGGGATCAATTTTCTCTAGGG 60.469 40.741 26.71 15.68 40.30 3.53
5171 5504 7.067494 ACGAAAATGGGATCAATTTTCTCTAGG 59.933 37.037 26.71 19.16 40.30 3.02
5172 5505 7.989826 ACGAAAATGGGATCAATTTTCTCTAG 58.010 34.615 26.71 19.38 40.30 2.43
5173 5506 7.938140 ACGAAAATGGGATCAATTTTCTCTA 57.062 32.000 26.71 0.00 40.30 2.43
5174 5507 6.840780 ACGAAAATGGGATCAATTTTCTCT 57.159 33.333 26.71 17.04 40.30 3.10
5175 5508 7.488150 GGTAACGAAAATGGGATCAATTTTCTC 59.512 37.037 26.71 18.97 40.30 2.87
5176 5509 7.039363 TGGTAACGAAAATGGGATCAATTTTCT 60.039 33.333 26.71 18.61 40.30 2.52
5177 5510 7.093992 TGGTAACGAAAATGGGATCAATTTTC 58.906 34.615 23.31 23.31 39.55 2.29
5178 5511 6.998802 TGGTAACGAAAATGGGATCAATTTT 58.001 32.000 14.74 14.74 42.51 1.82
5179 5512 6.597832 TGGTAACGAAAATGGGATCAATTT 57.402 33.333 0.00 0.00 42.51 1.82
5180 5513 6.015010 TGTTGGTAACGAAAATGGGATCAATT 60.015 34.615 0.00 0.00 42.51 2.32
5181 5514 5.478679 TGTTGGTAACGAAAATGGGATCAAT 59.521 36.000 0.00 0.00 42.51 2.57
5182 5515 4.827835 TGTTGGTAACGAAAATGGGATCAA 59.172 37.500 0.00 0.00 42.51 2.57
5183 5516 4.216687 GTGTTGGTAACGAAAATGGGATCA 59.783 41.667 0.00 0.00 42.51 2.92
5184 5517 4.380128 GGTGTTGGTAACGAAAATGGGATC 60.380 45.833 0.00 0.00 42.51 3.36
5185 5518 3.508402 GGTGTTGGTAACGAAAATGGGAT 59.492 43.478 0.00 0.00 42.51 3.85
5186 5519 2.885894 GGTGTTGGTAACGAAAATGGGA 59.114 45.455 0.00 0.00 42.51 4.37
5187 5520 2.888414 AGGTGTTGGTAACGAAAATGGG 59.112 45.455 0.00 0.00 42.51 4.00
5188 5521 3.305064 CCAGGTGTTGGTAACGAAAATGG 60.305 47.826 0.00 0.00 42.41 3.16
5189 5522 3.305064 CCCAGGTGTTGGTAACGAAAATG 60.305 47.826 0.00 0.00 46.25 2.32
5190 5523 2.888414 CCCAGGTGTTGGTAACGAAAAT 59.112 45.455 0.00 0.00 46.25 1.82
5191 5524 2.092538 TCCCAGGTGTTGGTAACGAAAA 60.093 45.455 0.00 0.00 46.25 2.29
5192 5525 1.489649 TCCCAGGTGTTGGTAACGAAA 59.510 47.619 0.00 0.00 46.25 3.46
5193 5526 1.071071 CTCCCAGGTGTTGGTAACGAA 59.929 52.381 0.00 0.00 46.25 3.85
5194 5527 0.682852 CTCCCAGGTGTTGGTAACGA 59.317 55.000 0.00 0.00 46.25 3.85
5195 5528 0.321298 CCTCCCAGGTGTTGGTAACG 60.321 60.000 0.00 0.00 46.25 3.18
5196 5529 1.061546 TCCTCCCAGGTGTTGGTAAC 58.938 55.000 0.00 0.00 46.25 2.50
5197 5530 1.061546 GTCCTCCCAGGTGTTGGTAA 58.938 55.000 0.00 0.00 46.25 2.85
5198 5531 0.104882 TGTCCTCCCAGGTGTTGGTA 60.105 55.000 0.00 0.00 46.25 3.25
5199 5532 0.772124 ATGTCCTCCCAGGTGTTGGT 60.772 55.000 0.00 0.00 46.25 3.67
5201 5534 0.987294 AGATGTCCTCCCAGGTGTTG 59.013 55.000 0.00 0.00 36.53 3.33
5202 5535 1.747444 AAGATGTCCTCCCAGGTGTT 58.253 50.000 0.00 0.00 36.53 3.32
5203 5536 1.630878 GAAAGATGTCCTCCCAGGTGT 59.369 52.381 0.00 0.00 36.53 4.16
5204 5537 1.065126 GGAAAGATGTCCTCCCAGGTG 60.065 57.143 0.00 0.00 36.53 4.00
5205 5538 1.290134 GGAAAGATGTCCTCCCAGGT 58.710 55.000 0.00 0.00 36.53 4.00
5206 5539 1.289160 TGGAAAGATGTCCTCCCAGG 58.711 55.000 0.00 0.00 38.62 4.45
5207 5540 2.928334 CATGGAAAGATGTCCTCCCAG 58.072 52.381 0.00 0.00 38.62 4.45
5208 5541 1.064463 GCATGGAAAGATGTCCTCCCA 60.064 52.381 0.00 0.00 38.62 4.37
5209 5542 1.685148 GCATGGAAAGATGTCCTCCC 58.315 55.000 0.00 0.00 38.62 4.30
5210 5543 1.303309 CGCATGGAAAGATGTCCTCC 58.697 55.000 0.00 0.00 38.62 4.30
5211 5544 1.134401 TCCGCATGGAAAGATGTCCTC 60.134 52.381 0.00 0.00 42.85 3.71
5212 5545 0.911769 TCCGCATGGAAAGATGTCCT 59.088 50.000 0.00 0.00 42.85 3.85
5213 5546 3.476740 TCCGCATGGAAAGATGTCC 57.523 52.632 0.00 0.00 42.85 4.02
5222 5555 1.234821 GTCAACAAGTTCCGCATGGA 58.765 50.000 0.00 0.00 44.61 3.41
5223 5556 0.110238 CGTCAACAAGTTCCGCATGG 60.110 55.000 0.00 0.00 0.00 3.66
5224 5557 0.110238 CCGTCAACAAGTTCCGCATG 60.110 55.000 0.00 0.00 0.00 4.06
5225 5558 1.852067 GCCGTCAACAAGTTCCGCAT 61.852 55.000 0.00 0.00 0.00 4.73
5226 5559 2.539338 GCCGTCAACAAGTTCCGCA 61.539 57.895 0.00 0.00 0.00 5.69
5227 5560 2.171489 GAGCCGTCAACAAGTTCCGC 62.171 60.000 0.00 0.00 0.00 5.54
5228 5561 0.600255 AGAGCCGTCAACAAGTTCCG 60.600 55.000 0.00 0.00 0.00 4.30
5229 5562 1.264288 CAAGAGCCGTCAACAAGTTCC 59.736 52.381 0.00 0.00 0.00 3.62
5230 5563 1.264288 CCAAGAGCCGTCAACAAGTTC 59.736 52.381 0.00 0.00 0.00 3.01
5231 5564 1.308998 CCAAGAGCCGTCAACAAGTT 58.691 50.000 0.00 0.00 0.00 2.66
5232 5565 1.166531 GCCAAGAGCCGTCAACAAGT 61.167 55.000 0.00 0.00 34.35 3.16
5233 5566 1.165907 TGCCAAGAGCCGTCAACAAG 61.166 55.000 0.00 0.00 42.71 3.16
5234 5567 1.153066 TGCCAAGAGCCGTCAACAA 60.153 52.632 0.00 0.00 42.71 2.83
5235 5568 1.891919 GTGCCAAGAGCCGTCAACA 60.892 57.895 0.00 0.00 42.71 3.33
5236 5569 2.946762 GTGCCAAGAGCCGTCAAC 59.053 61.111 0.00 0.00 42.71 3.18
5237 5570 2.664851 CGTGCCAAGAGCCGTCAA 60.665 61.111 0.00 0.00 42.71 3.18
5238 5571 4.680237 CCGTGCCAAGAGCCGTCA 62.680 66.667 0.00 0.00 42.71 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.