Multiple sequence alignment - TraesCS7B01G160600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G160600 chr7B 100.000 3030 0 0 1 3030 219460814 219463843 0.000000e+00 5596.0
1 TraesCS7B01G160600 chr7B 87.739 628 74 3 2405 3030 237481673 237481047 0.000000e+00 730.0
2 TraesCS7B01G160600 chr7B 86.624 157 17 1 786 938 561177569 561177725 1.440000e-38 171.0
3 TraesCS7B01G160600 chr7A 91.339 1143 40 14 1072 2162 259557190 259558325 0.000000e+00 1507.0
4 TraesCS7B01G160600 chr7A 93.793 145 8 1 2264 2408 259558517 259558660 1.830000e-52 217.0
5 TraesCS7B01G160600 chr7A 82.308 130 8 6 2150 2265 259558341 259558469 6.910000e-17 99.0
6 TraesCS7B01G160600 chr7D 88.333 1260 64 33 1072 2261 244146028 244147274 0.000000e+00 1435.0
7 TraesCS7B01G160600 chr7D 78.056 638 95 31 18 646 566443118 566443719 7.990000e-96 361.0
8 TraesCS7B01G160600 chr7D 76.439 747 108 43 5 739 423643892 423643202 2.890000e-90 342.0
9 TraesCS7B01G160600 chr7D 94.040 151 9 0 2262 2412 244147318 244147468 2.350000e-56 230.0
10 TraesCS7B01G160600 chr7D 89.583 144 14 1 22 165 126792098 126792240 6.670000e-42 182.0
11 TraesCS7B01G160600 chr7D 85.556 180 19 7 18 195 399821861 399822035 6.670000e-42 182.0
12 TraesCS7B01G160600 chr7D 82.166 157 23 4 786 942 193942780 193942629 2.450000e-26 130.0
13 TraesCS7B01G160600 chr2A 85.860 785 83 13 5 784 467308599 467307838 0.000000e+00 809.0
14 TraesCS7B01G160600 chr2B 88.730 630 66 4 2402 3030 783652507 783653132 0.000000e+00 765.0
15 TraesCS7B01G160600 chr2B 88.235 629 70 3 2403 3030 212556797 212557422 0.000000e+00 749.0
16 TraesCS7B01G160600 chr2B 75.794 756 114 38 5 742 342239821 342240525 4.870000e-83 318.0
17 TraesCS7B01G160600 chr2B 93.939 198 12 0 4 201 796585554 796585751 1.770000e-77 300.0
18 TraesCS7B01G160600 chr2B 93.333 75 5 0 787 861 47374698 47374624 8.880000e-21 111.0
19 TraesCS7B01G160600 chr1B 89.238 604 61 3 2407 3010 577681046 577681645 0.000000e+00 752.0
20 TraesCS7B01G160600 chr4B 87.261 628 77 3 2405 3030 666756665 666757291 0.000000e+00 713.0
21 TraesCS7B01G160600 chr4B 87.459 606 72 3 2405 3008 28083822 28083219 0.000000e+00 695.0
22 TraesCS7B01G160600 chr4B 84.967 153 22 1 787 938 11966082 11965930 1.450000e-33 154.0
23 TraesCS7B01G160600 chr3B 86.880 625 77 4 2407 3030 790656094 790656714 0.000000e+00 695.0
24 TraesCS7B01G160600 chr4D 82.763 789 102 24 5 786 395224518 395225279 0.000000e+00 673.0
25 TraesCS7B01G160600 chr4D 87.705 122 12 3 18 137 335885888 335886008 4.070000e-29 139.0
26 TraesCS7B01G160600 chr4D 93.103 58 4 0 800 857 16807594 16807651 5.380000e-13 86.1
27 TraesCS7B01G160600 chr5B 85.220 636 81 8 2405 3030 394630702 394631334 2.550000e-180 641.0
28 TraesCS7B01G160600 chr5B 84.810 158 18 1 787 938 138774200 138774357 1.450000e-33 154.0
29 TraesCS7B01G160600 chr6D 85.950 605 73 8 2405 3006 141140511 141141106 1.180000e-178 636.0
30 TraesCS7B01G160600 chr6D 80.672 238 30 12 18 245 184408034 184407803 1.440000e-38 171.0
31 TraesCS7B01G160600 chr3D 81.712 771 111 27 29 786 123482305 123483058 1.540000e-172 616.0
32 TraesCS7B01G160600 chr3A 80.389 668 96 20 29 692 577243129 577242493 2.730000e-130 475.0
33 TraesCS7B01G160600 chr5D 76.729 752 127 44 5 742 354931826 354932543 2.850000e-100 375.0
34 TraesCS7B01G160600 chr5D 77.688 493 63 28 293 767 539440241 539440704 1.080000e-64 257.0
35 TraesCS7B01G160600 chr5D 89.109 101 10 1 7 106 387731702 387731602 1.140000e-24 124.0
36 TraesCS7B01G160600 chr5D 93.023 43 3 0 790 832 17227975 17227933 2.520000e-06 63.9
37 TraesCS7B01G160600 chr2D 82.506 423 52 14 289 707 63743218 63743622 4.810000e-93 351.0
38 TraesCS7B01G160600 chr2D 75.192 782 138 42 18 786 531926703 531927441 4.870000e-83 318.0
39 TraesCS7B01G160600 chr2D 87.451 255 28 4 5 256 63742734 63742987 1.060000e-74 291.0
40 TraesCS7B01G160600 chr2D 77.778 342 55 13 18 358 71664001 71664322 1.110000e-44 191.0
41 TraesCS7B01G160600 chr4A 81.070 243 37 7 339 579 363974784 363975019 5.160000e-43 185.0
42 TraesCS7B01G160600 chr1D 89.320 103 9 2 5 106 88207181 88207282 8.820000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G160600 chr7B 219460814 219463843 3029 False 5596.000000 5596 100.000000 1 3030 1 chr7B.!!$F1 3029
1 TraesCS7B01G160600 chr7B 237481047 237481673 626 True 730.000000 730 87.739000 2405 3030 1 chr7B.!!$R1 625
2 TraesCS7B01G160600 chr7A 259557190 259558660 1470 False 607.666667 1507 89.146667 1072 2408 3 chr7A.!!$F1 1336
3 TraesCS7B01G160600 chr7D 244146028 244147468 1440 False 832.500000 1435 91.186500 1072 2412 2 chr7D.!!$F4 1340
4 TraesCS7B01G160600 chr7D 566443118 566443719 601 False 361.000000 361 78.056000 18 646 1 chr7D.!!$F3 628
5 TraesCS7B01G160600 chr7D 423643202 423643892 690 True 342.000000 342 76.439000 5 739 1 chr7D.!!$R2 734
6 TraesCS7B01G160600 chr2A 467307838 467308599 761 True 809.000000 809 85.860000 5 784 1 chr2A.!!$R1 779
7 TraesCS7B01G160600 chr2B 783652507 783653132 625 False 765.000000 765 88.730000 2402 3030 1 chr2B.!!$F3 628
8 TraesCS7B01G160600 chr2B 212556797 212557422 625 False 749.000000 749 88.235000 2403 3030 1 chr2B.!!$F1 627
9 TraesCS7B01G160600 chr2B 342239821 342240525 704 False 318.000000 318 75.794000 5 742 1 chr2B.!!$F2 737
10 TraesCS7B01G160600 chr1B 577681046 577681645 599 False 752.000000 752 89.238000 2407 3010 1 chr1B.!!$F1 603
11 TraesCS7B01G160600 chr4B 666756665 666757291 626 False 713.000000 713 87.261000 2405 3030 1 chr4B.!!$F1 625
12 TraesCS7B01G160600 chr4B 28083219 28083822 603 True 695.000000 695 87.459000 2405 3008 1 chr4B.!!$R2 603
13 TraesCS7B01G160600 chr3B 790656094 790656714 620 False 695.000000 695 86.880000 2407 3030 1 chr3B.!!$F1 623
14 TraesCS7B01G160600 chr4D 395224518 395225279 761 False 673.000000 673 82.763000 5 786 1 chr4D.!!$F3 781
15 TraesCS7B01G160600 chr5B 394630702 394631334 632 False 641.000000 641 85.220000 2405 3030 1 chr5B.!!$F2 625
16 TraesCS7B01G160600 chr6D 141140511 141141106 595 False 636.000000 636 85.950000 2405 3006 1 chr6D.!!$F1 601
17 TraesCS7B01G160600 chr3D 123482305 123483058 753 False 616.000000 616 81.712000 29 786 1 chr3D.!!$F1 757
18 TraesCS7B01G160600 chr3A 577242493 577243129 636 True 475.000000 475 80.389000 29 692 1 chr3A.!!$R1 663
19 TraesCS7B01G160600 chr5D 354931826 354932543 717 False 375.000000 375 76.729000 5 742 1 chr5D.!!$F1 737
20 TraesCS7B01G160600 chr2D 63742734 63743622 888 False 321.000000 351 84.978500 5 707 2 chr2D.!!$F3 702
21 TraesCS7B01G160600 chr2D 531926703 531927441 738 False 318.000000 318 75.192000 18 786 1 chr2D.!!$F2 768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 637 0.108963 CCGTCACCCAAACCCTAACA 59.891 55.0 0.00 0.0 0.00 2.41 F
1024 1349 0.108615 CCATACTCCATCCGGATCGC 60.109 60.0 15.88 0.0 41.79 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1433 1782 1.609635 TACCGGAGCCGCAGAAATCA 61.61 55.0 9.46 0.00 38.24 2.57 R
2524 3016 0.959553 TTTGCGGGCCGTGATAAAAA 59.04 45.0 28.82 14.86 0.00 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.245408 TGTCAAATTTCTATACAACTGCCCT 58.755 36.000 0.00 0.00 0.00 5.19
35 36 6.136857 TCTATACAACTGCCCTAGTCAGATT 58.863 40.000 14.05 4.60 39.18 2.40
118 122 7.754924 CCATCAAATTTATGTAAAACTGCGTCT 59.245 33.333 0.00 0.00 0.00 4.18
122 126 6.811253 ATTTATGTAAAACTGCGTCTTGGA 57.189 33.333 0.00 0.00 0.00 3.53
244 295 0.462047 CACCCCCTCGTCATAGCAAC 60.462 60.000 0.00 0.00 0.00 4.17
325 602 1.375396 CGAGGACGCCATGGACAAA 60.375 57.895 18.40 0.00 0.00 2.83
358 637 0.108963 CCGTCACCCAAACCCTAACA 59.891 55.000 0.00 0.00 0.00 2.41
383 662 1.628238 AACACGAACTCCACCACCCA 61.628 55.000 0.00 0.00 0.00 4.51
416 718 2.764547 CGGGAGGGGAGGGAGAAC 60.765 72.222 0.00 0.00 0.00 3.01
418 720 1.229853 GGGAGGGGAGGGAGAACAA 60.230 63.158 0.00 0.00 0.00 2.83
424 726 1.761174 GGAGGGAGAACAAGTGCCA 59.239 57.895 0.00 0.00 0.00 4.92
552 857 1.408961 CGTTGCTAGAGGAGAGGGAGA 60.409 57.143 0.00 0.00 0.00 3.71
583 894 5.711976 GGAAGTTCAAATGAAAGGGATGAGA 59.288 40.000 5.01 0.00 35.58 3.27
609 924 0.536460 GGGAGGTTTCGAACAAGCCA 60.536 55.000 0.00 0.00 0.00 4.75
611 926 1.679153 GGAGGTTTCGAACAAGCCAAA 59.321 47.619 0.00 0.00 0.00 3.28
696 1019 1.189446 GTGCATTATCTCGTAACGCCG 59.811 52.381 0.00 0.00 30.70 6.46
698 1021 0.429736 CATTATCTCGTAACGCCGCG 59.570 55.000 12.14 12.14 0.00 6.46
753 1078 3.893763 CGCATCCGACCGCTCTCT 61.894 66.667 0.00 0.00 36.29 3.10
786 1111 3.561213 CAGCGATCCAGCACAGCG 61.561 66.667 0.00 0.00 40.15 5.18
787 1112 4.827087 AGCGATCCAGCACAGCGG 62.827 66.667 0.00 0.00 40.15 5.52
790 1115 4.864334 GATCCAGCACAGCGGGGG 62.864 72.222 8.26 0.28 43.79 5.40
793 1118 4.431131 CCAGCACAGCGGGGGATT 62.431 66.667 0.00 0.00 40.10 3.01
794 1119 2.361610 CAGCACAGCGGGGGATTT 60.362 61.111 0.00 0.00 0.00 2.17
795 1120 2.361610 AGCACAGCGGGGGATTTG 60.362 61.111 0.00 0.00 0.00 2.32
796 1121 2.361104 GCACAGCGGGGGATTTGA 60.361 61.111 0.00 0.00 0.00 2.69
797 1122 1.754234 GCACAGCGGGGGATTTGAT 60.754 57.895 0.00 0.00 0.00 2.57
798 1123 0.465460 GCACAGCGGGGGATTTGATA 60.465 55.000 0.00 0.00 0.00 2.15
799 1124 2.021723 GCACAGCGGGGGATTTGATAA 61.022 52.381 0.00 0.00 0.00 1.75
800 1125 2.586425 CACAGCGGGGGATTTGATAAT 58.414 47.619 0.00 0.00 0.00 1.28
801 1126 2.958355 CACAGCGGGGGATTTGATAATT 59.042 45.455 0.00 0.00 0.00 1.40
802 1127 3.384467 CACAGCGGGGGATTTGATAATTT 59.616 43.478 0.00 0.00 0.00 1.82
803 1128 3.384467 ACAGCGGGGGATTTGATAATTTG 59.616 43.478 0.00 0.00 0.00 2.32
804 1129 2.365293 AGCGGGGGATTTGATAATTTGC 59.635 45.455 0.00 0.00 0.00 3.68
805 1130 2.547855 GCGGGGGATTTGATAATTTGCC 60.548 50.000 0.00 0.00 0.00 4.52
806 1131 2.037121 CGGGGGATTTGATAATTTGCCC 59.963 50.000 0.00 0.00 0.00 5.36
807 1132 3.769739 GGGGATTTGATAATTTGCCCC 57.230 47.619 0.00 0.00 46.15 5.80
809 1134 4.071961 GGGATTTGATAATTTGCCCCAC 57.928 45.455 0.00 0.00 32.98 4.61
810 1135 3.711190 GGGATTTGATAATTTGCCCCACT 59.289 43.478 0.00 0.00 32.98 4.00
811 1136 4.164030 GGGATTTGATAATTTGCCCCACTT 59.836 41.667 0.00 0.00 32.98 3.16
812 1137 5.339118 GGGATTTGATAATTTGCCCCACTTT 60.339 40.000 0.00 0.00 32.98 2.66
813 1138 6.126911 GGGATTTGATAATTTGCCCCACTTTA 60.127 38.462 0.00 0.00 32.98 1.85
814 1139 6.761242 GGATTTGATAATTTGCCCCACTTTAC 59.239 38.462 0.00 0.00 0.00 2.01
815 1140 6.672266 TTTGATAATTTGCCCCACTTTACA 57.328 33.333 0.00 0.00 0.00 2.41
816 1141 6.672266 TTGATAATTTGCCCCACTTTACAA 57.328 33.333 0.00 0.00 0.00 2.41
817 1142 6.279513 TGATAATTTGCCCCACTTTACAAG 57.720 37.500 0.00 0.00 0.00 3.16
818 1143 5.186797 TGATAATTTGCCCCACTTTACAAGG 59.813 40.000 0.00 0.00 0.00 3.61
819 1144 1.710816 TTTGCCCCACTTTACAAGGG 58.289 50.000 0.00 0.00 42.94 3.95
829 1154 5.121221 CACTTTACAAGGGGTTTGATGAC 57.879 43.478 0.00 0.00 39.21 3.06
830 1155 4.827284 CACTTTACAAGGGGTTTGATGACT 59.173 41.667 0.00 0.00 39.21 3.41
831 1156 5.301805 CACTTTACAAGGGGTTTGATGACTT 59.698 40.000 0.00 0.00 39.21 3.01
832 1157 5.301805 ACTTTACAAGGGGTTTGATGACTTG 59.698 40.000 0.00 0.00 43.01 3.16
833 1158 3.593442 ACAAGGGGTTTGATGACTTGA 57.407 42.857 9.41 0.00 40.60 3.02
834 1159 3.222603 ACAAGGGGTTTGATGACTTGAC 58.777 45.455 9.41 0.00 40.60 3.18
835 1160 2.558359 CAAGGGGTTTGATGACTTGACC 59.442 50.000 0.00 0.00 40.60 4.02
836 1161 2.065799 AGGGGTTTGATGACTTGACCT 58.934 47.619 0.00 0.00 0.00 3.85
837 1162 3.256704 AGGGGTTTGATGACTTGACCTA 58.743 45.455 0.00 0.00 0.00 3.08
838 1163 3.852578 AGGGGTTTGATGACTTGACCTAT 59.147 43.478 0.00 0.00 0.00 2.57
839 1164 3.947834 GGGGTTTGATGACTTGACCTATG 59.052 47.826 0.00 0.00 0.00 2.23
840 1165 4.324254 GGGGTTTGATGACTTGACCTATGA 60.324 45.833 0.00 0.00 0.00 2.15
841 1166 5.440610 GGGTTTGATGACTTGACCTATGAT 58.559 41.667 0.00 0.00 0.00 2.45
842 1167 5.888161 GGGTTTGATGACTTGACCTATGATT 59.112 40.000 0.00 0.00 0.00 2.57
843 1168 6.183360 GGGTTTGATGACTTGACCTATGATTG 60.183 42.308 0.00 0.00 0.00 2.67
844 1169 6.375455 GGTTTGATGACTTGACCTATGATTGT 59.625 38.462 0.00 0.00 0.00 2.71
845 1170 7.414540 GGTTTGATGACTTGACCTATGATTGTC 60.415 40.741 0.00 0.00 0.00 3.18
846 1171 6.550938 TGATGACTTGACCTATGATTGTCT 57.449 37.500 0.00 0.00 32.67 3.41
847 1172 6.577103 TGATGACTTGACCTATGATTGTCTC 58.423 40.000 0.00 0.00 32.67 3.36
848 1173 6.155049 TGATGACTTGACCTATGATTGTCTCA 59.845 38.462 0.00 0.00 38.53 3.27
849 1174 6.358974 TGACTTGACCTATGATTGTCTCAA 57.641 37.500 0.00 0.00 37.44 3.02
850 1175 6.950842 TGACTTGACCTATGATTGTCTCAAT 58.049 36.000 0.00 0.00 37.44 2.57
851 1176 6.820152 TGACTTGACCTATGATTGTCTCAATG 59.180 38.462 0.00 0.00 37.44 2.82
852 1177 6.950842 ACTTGACCTATGATTGTCTCAATGA 58.049 36.000 0.00 0.00 37.44 2.57
853 1178 6.820656 ACTTGACCTATGATTGTCTCAATGAC 59.179 38.462 0.00 0.00 45.54 3.06
862 1187 2.191128 GTCTCAATGACAGTTGCCCT 57.809 50.000 0.00 0.00 44.73 5.19
864 1189 1.171308 CTCAATGACAGTTGCCCTGG 58.829 55.000 5.58 0.00 46.06 4.45
865 1190 0.251297 TCAATGACAGTTGCCCTGGG 60.251 55.000 8.86 8.86 46.06 4.45
883 1208 3.801997 CCCCATTCGGCAGCCTCT 61.802 66.667 10.54 0.00 0.00 3.69
884 1209 2.273449 CCCATTCGGCAGCCTCTT 59.727 61.111 10.54 0.00 0.00 2.85
885 1210 1.526887 CCCATTCGGCAGCCTCTTA 59.473 57.895 10.54 0.00 0.00 2.10
886 1211 0.533755 CCCATTCGGCAGCCTCTTAG 60.534 60.000 10.54 0.00 0.00 2.18
887 1212 0.533755 CCATTCGGCAGCCTCTTAGG 60.534 60.000 10.54 0.96 38.80 2.69
888 1213 0.533755 CATTCGGCAGCCTCTTAGGG 60.534 60.000 10.54 0.00 35.37 3.53
889 1214 1.700042 ATTCGGCAGCCTCTTAGGGG 61.700 60.000 10.54 0.00 35.37 4.79
890 1215 2.764128 CGGCAGCCTCTTAGGGGA 60.764 66.667 10.54 0.00 35.37 4.81
891 1216 2.367202 CGGCAGCCTCTTAGGGGAA 61.367 63.158 10.54 0.00 35.37 3.97
892 1217 1.700042 CGGCAGCCTCTTAGGGGAAT 61.700 60.000 10.54 0.00 35.37 3.01
893 1218 1.435256 GGCAGCCTCTTAGGGGAATA 58.565 55.000 0.38 0.00 35.37 1.75
894 1219 1.774856 GGCAGCCTCTTAGGGGAATAA 59.225 52.381 0.38 0.00 35.37 1.40
895 1220 2.174854 GGCAGCCTCTTAGGGGAATAAA 59.825 50.000 0.38 0.00 35.37 1.40
896 1221 3.181428 GGCAGCCTCTTAGGGGAATAAAT 60.181 47.826 0.38 0.00 35.37 1.40
897 1222 3.823304 GCAGCCTCTTAGGGGAATAAATG 59.177 47.826 0.38 0.00 35.37 2.32
898 1223 4.446311 GCAGCCTCTTAGGGGAATAAATGA 60.446 45.833 0.38 0.00 35.37 2.57
899 1224 5.750228 GCAGCCTCTTAGGGGAATAAATGAT 60.750 44.000 0.38 0.00 35.37 2.45
900 1225 5.942826 CAGCCTCTTAGGGGAATAAATGATC 59.057 44.000 0.38 0.00 35.37 2.92
901 1226 5.612688 AGCCTCTTAGGGGAATAAATGATCA 59.387 40.000 0.38 0.00 35.37 2.92
902 1227 6.103205 AGCCTCTTAGGGGAATAAATGATCAA 59.897 38.462 0.38 0.00 35.37 2.57
903 1228 6.777580 GCCTCTTAGGGGAATAAATGATCAAA 59.222 38.462 0.38 0.00 35.37 2.69
904 1229 7.452813 GCCTCTTAGGGGAATAAATGATCAAAT 59.547 37.037 0.38 0.00 35.37 2.32
905 1230 8.800332 CCTCTTAGGGGAATAAATGATCAAATG 58.200 37.037 0.00 0.00 0.00 2.32
906 1231 8.710749 TCTTAGGGGAATAAATGATCAAATGG 57.289 34.615 0.00 0.00 0.00 3.16
907 1232 8.510283 TCTTAGGGGAATAAATGATCAAATGGA 58.490 33.333 0.00 0.00 0.00 3.41
908 1233 8.710749 TTAGGGGAATAAATGATCAAATGGAG 57.289 34.615 0.00 0.00 0.00 3.86
909 1234 6.925934 AGGGGAATAAATGATCAAATGGAGA 58.074 36.000 0.00 0.00 0.00 3.71
910 1235 7.364627 AGGGGAATAAATGATCAAATGGAGAA 58.635 34.615 0.00 0.00 0.00 2.87
911 1236 7.845800 AGGGGAATAAATGATCAAATGGAGAAA 59.154 33.333 0.00 0.00 0.00 2.52
912 1237 8.654094 GGGGAATAAATGATCAAATGGAGAAAT 58.346 33.333 0.00 0.00 0.00 2.17
922 1247 8.632679 TGATCAAATGGAGAAATAAAGTATGGC 58.367 33.333 0.00 0.00 0.00 4.40
923 1248 7.953005 TCAAATGGAGAAATAAAGTATGGCA 57.047 32.000 0.00 0.00 0.00 4.92
924 1249 8.359875 TCAAATGGAGAAATAAAGTATGGCAA 57.640 30.769 0.00 0.00 0.00 4.52
925 1250 8.811017 TCAAATGGAGAAATAAAGTATGGCAAA 58.189 29.630 0.00 0.00 0.00 3.68
926 1251 9.434420 CAAATGGAGAAATAAAGTATGGCAAAA 57.566 29.630 0.00 0.00 0.00 2.44
927 1252 9.657419 AAATGGAGAAATAAAGTATGGCAAAAG 57.343 29.630 0.00 0.00 0.00 2.27
928 1253 8.593945 ATGGAGAAATAAAGTATGGCAAAAGA 57.406 30.769 0.00 0.00 0.00 2.52
929 1254 8.593945 TGGAGAAATAAAGTATGGCAAAAGAT 57.406 30.769 0.00 0.00 0.00 2.40
930 1255 8.686334 TGGAGAAATAAAGTATGGCAAAAGATC 58.314 33.333 0.00 0.00 0.00 2.75
931 1256 8.686334 GGAGAAATAAAGTATGGCAAAAGATCA 58.314 33.333 0.00 0.00 0.00 2.92
940 1265 8.552083 AGTATGGCAAAAGATCAAATTTTTCC 57.448 30.769 0.00 0.00 34.67 3.13
941 1266 6.822667 ATGGCAAAAGATCAAATTTTTCCC 57.177 33.333 0.00 0.00 33.59 3.97
942 1267 5.688807 TGGCAAAAGATCAAATTTTTCCCA 58.311 33.333 0.00 0.00 33.59 4.37
943 1268 6.125029 TGGCAAAAGATCAAATTTTTCCCAA 58.875 32.000 0.00 0.00 33.59 4.12
944 1269 6.039159 TGGCAAAAGATCAAATTTTTCCCAAC 59.961 34.615 0.00 0.00 33.59 3.77
945 1270 6.039159 GGCAAAAGATCAAATTTTTCCCAACA 59.961 34.615 0.00 0.00 29.83 3.33
946 1271 6.912051 GCAAAAGATCAAATTTTTCCCAACAC 59.088 34.615 0.00 0.00 0.00 3.32
947 1272 6.843069 AAAGATCAAATTTTTCCCAACACG 57.157 33.333 0.00 0.00 0.00 4.49
948 1273 4.306600 AGATCAAATTTTTCCCAACACGC 58.693 39.130 0.00 0.00 0.00 5.34
949 1274 2.464865 TCAAATTTTTCCCAACACGCG 58.535 42.857 3.53 3.53 0.00 6.01
950 1275 2.099263 TCAAATTTTTCCCAACACGCGA 59.901 40.909 15.93 0.00 0.00 5.87
951 1276 3.056304 CAAATTTTTCCCAACACGCGAT 58.944 40.909 15.93 0.00 0.00 4.58
952 1277 3.378911 AATTTTTCCCAACACGCGATT 57.621 38.095 15.93 3.30 0.00 3.34
953 1278 4.506886 AATTTTTCCCAACACGCGATTA 57.493 36.364 15.93 0.00 0.00 1.75
954 1279 3.984508 TTTTTCCCAACACGCGATTAA 57.015 38.095 15.93 0.00 0.00 1.40
955 1280 3.546002 TTTTCCCAACACGCGATTAAG 57.454 42.857 15.93 1.62 0.00 1.85
956 1281 2.459060 TTCCCAACACGCGATTAAGA 57.541 45.000 15.93 4.11 0.00 2.10
957 1282 2.459060 TCCCAACACGCGATTAAGAA 57.541 45.000 15.93 0.00 0.00 2.52
958 1283 2.980568 TCCCAACACGCGATTAAGAAT 58.019 42.857 15.93 0.00 0.00 2.40
959 1284 3.340034 TCCCAACACGCGATTAAGAATT 58.660 40.909 15.93 0.00 0.00 2.17
960 1285 3.754323 TCCCAACACGCGATTAAGAATTT 59.246 39.130 15.93 0.00 0.00 1.82
961 1286 3.851403 CCCAACACGCGATTAAGAATTTG 59.149 43.478 15.93 0.00 0.00 2.32
962 1287 3.851403 CCAACACGCGATTAAGAATTTGG 59.149 43.478 15.93 7.47 0.00 3.28
963 1288 3.757745 ACACGCGATTAAGAATTTGGG 57.242 42.857 15.93 0.00 0.00 4.12
964 1289 3.340034 ACACGCGATTAAGAATTTGGGA 58.660 40.909 15.93 0.00 0.00 4.37
965 1290 3.754323 ACACGCGATTAAGAATTTGGGAA 59.246 39.130 15.93 0.00 0.00 3.97
966 1291 4.216687 ACACGCGATTAAGAATTTGGGAAA 59.783 37.500 15.93 0.00 0.00 3.13
967 1292 5.157781 CACGCGATTAAGAATTTGGGAAAA 58.842 37.500 15.93 0.00 0.00 2.29
968 1293 5.804979 CACGCGATTAAGAATTTGGGAAAAT 59.195 36.000 15.93 0.00 0.00 1.82
969 1294 6.970043 CACGCGATTAAGAATTTGGGAAAATA 59.030 34.615 15.93 0.00 0.00 1.40
970 1295 7.486551 CACGCGATTAAGAATTTGGGAAAATAA 59.513 33.333 15.93 0.00 0.00 1.40
971 1296 8.030106 ACGCGATTAAGAATTTGGGAAAATAAA 58.970 29.630 15.93 0.00 0.00 1.40
972 1297 8.865001 CGCGATTAAGAATTTGGGAAAATAAAA 58.135 29.630 0.00 0.00 0.00 1.52
978 1303 8.601845 AAGAATTTGGGAAAATAAAAACTCCG 57.398 30.769 0.00 0.00 0.00 4.63
979 1304 7.958088 AGAATTTGGGAAAATAAAAACTCCGA 58.042 30.769 0.00 0.00 0.00 4.55
980 1305 8.425703 AGAATTTGGGAAAATAAAAACTCCGAA 58.574 29.630 0.00 0.00 0.00 4.30
981 1306 8.966069 AATTTGGGAAAATAAAAACTCCGAAA 57.034 26.923 0.00 0.00 39.16 3.46
982 1307 7.773864 TTTGGGAAAATAAAAACTCCGAAAC 57.226 32.000 0.00 0.00 32.69 2.78
983 1308 6.718522 TGGGAAAATAAAAACTCCGAAACT 57.281 33.333 0.00 0.00 0.00 2.66
984 1309 6.741109 TGGGAAAATAAAAACTCCGAAACTC 58.259 36.000 0.00 0.00 0.00 3.01
985 1310 5.854866 GGGAAAATAAAAACTCCGAAACTCG 59.145 40.000 0.00 0.00 40.07 4.18
994 1319 3.295800 CGAAACTCGGCCTACCCT 58.704 61.111 0.00 0.00 36.00 4.34
995 1320 1.595357 CGAAACTCGGCCTACCCTT 59.405 57.895 0.00 0.00 36.00 3.95
996 1321 0.819582 CGAAACTCGGCCTACCCTTA 59.180 55.000 0.00 0.00 36.00 2.69
997 1322 1.202382 CGAAACTCGGCCTACCCTTAG 60.202 57.143 0.00 0.00 36.00 2.18
998 1323 0.540454 AAACTCGGCCTACCCTTAGC 59.460 55.000 0.00 0.00 0.00 3.09
999 1324 1.673808 AACTCGGCCTACCCTTAGCG 61.674 60.000 0.00 0.00 0.00 4.26
1000 1325 1.826921 CTCGGCCTACCCTTAGCGA 60.827 63.158 0.00 0.00 0.00 4.93
1001 1326 1.152610 TCGGCCTACCCTTAGCGAT 60.153 57.895 0.00 0.00 0.00 4.58
1002 1327 0.111061 TCGGCCTACCCTTAGCGATA 59.889 55.000 0.00 0.00 0.00 2.92
1003 1328 0.526662 CGGCCTACCCTTAGCGATAG 59.473 60.000 0.00 0.00 0.00 2.08
1004 1329 1.630223 GGCCTACCCTTAGCGATAGT 58.370 55.000 0.00 0.00 39.35 2.12
1005 1330 1.545136 GGCCTACCCTTAGCGATAGTC 59.455 57.143 0.00 0.00 39.35 2.59
1006 1331 1.545136 GCCTACCCTTAGCGATAGTCC 59.455 57.143 0.00 0.00 39.35 3.85
1007 1332 2.872732 CCTACCCTTAGCGATAGTCCA 58.127 52.381 0.00 0.00 39.35 4.02
1008 1333 3.432378 CCTACCCTTAGCGATAGTCCAT 58.568 50.000 0.00 0.00 39.35 3.41
1009 1334 4.597004 CCTACCCTTAGCGATAGTCCATA 58.403 47.826 0.00 0.00 39.35 2.74
1010 1335 4.398673 CCTACCCTTAGCGATAGTCCATAC 59.601 50.000 0.00 0.00 39.35 2.39
1011 1336 4.115398 ACCCTTAGCGATAGTCCATACT 57.885 45.455 0.00 0.00 39.91 2.12
1012 1337 4.080687 ACCCTTAGCGATAGTCCATACTC 58.919 47.826 0.00 0.00 37.15 2.59
1013 1338 3.444388 CCCTTAGCGATAGTCCATACTCC 59.556 52.174 0.00 0.00 37.15 3.85
1014 1339 4.079970 CCTTAGCGATAGTCCATACTCCA 58.920 47.826 0.00 0.00 37.15 3.86
1015 1340 4.707448 CCTTAGCGATAGTCCATACTCCAT 59.293 45.833 0.00 0.00 37.15 3.41
1016 1341 5.163602 CCTTAGCGATAGTCCATACTCCATC 60.164 48.000 0.00 0.00 37.15 3.51
1017 1342 3.093057 AGCGATAGTCCATACTCCATCC 58.907 50.000 0.00 0.00 37.15 3.51
1018 1343 2.159366 GCGATAGTCCATACTCCATCCG 60.159 54.545 0.00 0.00 37.15 4.18
1019 1344 2.423892 CGATAGTCCATACTCCATCCGG 59.576 54.545 0.00 0.00 37.15 5.14
1020 1345 3.698289 GATAGTCCATACTCCATCCGGA 58.302 50.000 6.61 6.61 39.79 5.14
1021 1346 2.704190 AGTCCATACTCCATCCGGAT 57.296 50.000 12.38 12.38 41.79 4.18
1022 1347 2.530701 AGTCCATACTCCATCCGGATC 58.469 52.381 15.88 0.00 41.79 3.36
1023 1348 1.202582 GTCCATACTCCATCCGGATCG 59.797 57.143 15.88 8.71 41.79 3.69
1024 1349 0.108615 CCATACTCCATCCGGATCGC 60.109 60.000 15.88 0.00 41.79 4.58
1025 1350 0.456824 CATACTCCATCCGGATCGCG 60.457 60.000 15.88 5.59 41.79 5.87
1026 1351 0.608308 ATACTCCATCCGGATCGCGA 60.608 55.000 15.88 13.09 41.79 5.87
1027 1352 1.512996 TACTCCATCCGGATCGCGAC 61.513 60.000 15.88 5.43 41.79 5.19
1028 1353 3.881092 CTCCATCCGGATCGCGACG 62.881 68.421 15.88 12.19 41.79 5.12
1046 1371 3.691342 CCAACCGCCGACCAGAGA 61.691 66.667 0.00 0.00 0.00 3.10
1047 1372 2.125912 CAACCGCCGACCAGAGAG 60.126 66.667 0.00 0.00 0.00 3.20
1048 1373 2.600769 AACCGCCGACCAGAGAGT 60.601 61.111 0.00 0.00 0.00 3.24
1049 1374 2.637383 AACCGCCGACCAGAGAGTC 61.637 63.158 0.00 0.00 0.00 3.36
1050 1375 3.827898 CCGCCGACCAGAGAGTCC 61.828 72.222 0.00 0.00 32.91 3.85
1051 1376 4.180946 CGCCGACCAGAGAGTCCG 62.181 72.222 0.00 0.00 32.91 4.79
1052 1377 2.750637 GCCGACCAGAGAGTCCGA 60.751 66.667 0.00 0.00 32.91 4.55
1053 1378 2.122167 GCCGACCAGAGAGTCCGAT 61.122 63.158 0.00 0.00 32.91 4.18
1054 1379 2.026522 CCGACCAGAGAGTCCGATC 58.973 63.158 0.00 0.00 32.91 3.69
1055 1380 1.644372 CGACCAGAGAGTCCGATCG 59.356 63.158 8.51 8.51 32.91 3.69
1056 1381 0.810426 CGACCAGAGAGTCCGATCGA 60.810 60.000 18.66 0.00 32.91 3.59
1057 1382 0.941542 GACCAGAGAGTCCGATCGAG 59.058 60.000 18.66 6.99 0.00 4.04
1058 1383 0.542333 ACCAGAGAGTCCGATCGAGA 59.458 55.000 18.66 9.51 0.00 4.04
1059 1384 1.065345 ACCAGAGAGTCCGATCGAGAA 60.065 52.381 18.66 0.00 0.00 2.87
1060 1385 2.226330 CCAGAGAGTCCGATCGAGAAT 58.774 52.381 18.66 11.45 0.00 2.40
1061 1386 2.621055 CCAGAGAGTCCGATCGAGAATT 59.379 50.000 18.66 4.33 0.00 2.17
1062 1387 3.304391 CCAGAGAGTCCGATCGAGAATTC 60.304 52.174 18.66 12.50 0.00 2.17
1079 1404 4.459337 AGAATTCGAGACCCCAAAACAATC 59.541 41.667 0.00 0.00 0.00 2.67
1130 1455 4.891727 CCCGGCGTCCCTTCGATG 62.892 72.222 6.01 0.00 0.00 3.84
1187 1512 0.468400 GCCACCGATCTCCTAGTCCT 60.468 60.000 0.00 0.00 0.00 3.85
1196 1521 2.131854 TCTCCTAGTCCTCCTCTCCAG 58.868 57.143 0.00 0.00 0.00 3.86
1229 1578 6.238538 GGGTATCAAATTTAAGCGAATCGGAA 60.239 38.462 4.35 0.00 0.00 4.30
1282 1631 1.005867 GTAAGGGACGTGGACGCAA 60.006 57.895 0.00 0.00 44.43 4.85
1417 1766 1.078759 CACAATCGCTCGAGTGGGAC 61.079 60.000 24.88 1.37 45.24 4.46
1433 1782 1.340114 GGGACGAAAAGCAAGGGATCT 60.340 52.381 0.00 0.00 0.00 2.75
1516 1865 0.099082 AAGAAGGACGCGATCGAGTC 59.901 55.000 34.86 34.86 42.76 3.36
1550 1899 4.087892 TCGAGGAAGCAGCAGCCC 62.088 66.667 0.00 0.00 43.56 5.19
1613 1974 2.900273 CCCCACGTCGATGTCCAT 59.100 61.111 7.47 0.00 0.00 3.41
1784 2145 1.893062 CAGGCACTCGAGGATCACA 59.107 57.895 18.41 0.00 34.60 3.58
1941 2302 2.668280 GGCAAACTCGCCGAGACAC 61.668 63.158 22.80 6.87 43.52 3.67
1985 2346 2.098607 TCCTTCACGTTAGGTAGCGATG 59.901 50.000 12.07 0.00 34.29 3.84
1992 2353 2.877168 CGTTAGGTAGCGATGGAGTAGT 59.123 50.000 0.00 0.00 31.27 2.73
2110 2493 7.475015 TGCTTTTAGTGTCTGCATAAATCATC 58.525 34.615 0.00 0.00 0.00 2.92
2111 2494 6.630443 GCTTTTAGTGTCTGCATAAATCATCG 59.370 38.462 0.00 0.00 0.00 3.84
2112 2495 7.609760 TTTTAGTGTCTGCATAAATCATCGT 57.390 32.000 0.00 0.00 0.00 3.73
2113 2496 6.828502 TTAGTGTCTGCATAAATCATCGTC 57.171 37.500 0.00 0.00 0.00 4.20
2114 2497 4.758688 AGTGTCTGCATAAATCATCGTCA 58.241 39.130 0.00 0.00 0.00 4.35
2115 2498 4.807834 AGTGTCTGCATAAATCATCGTCAG 59.192 41.667 0.00 0.00 0.00 3.51
2116 2499 4.805719 GTGTCTGCATAAATCATCGTCAGA 59.194 41.667 0.00 0.00 0.00 3.27
2130 2513 2.815503 TCGTCAGACGTCAGGTATTGAA 59.184 45.455 22.16 0.00 43.14 2.69
2236 2677 5.730550 TGTTTCTAGACCTGCGTATTGAAT 58.269 37.500 0.00 0.00 27.78 2.57
2238 2679 4.224715 TCTAGACCTGCGTATTGAATCG 57.775 45.455 0.00 0.00 0.00 3.34
2247 2688 3.680458 TGCGTATTGAATCGTTACTGCAA 59.320 39.130 0.00 0.00 0.00 4.08
2254 2695 4.793071 TGAATCGTTACTGCAACAAATGG 58.207 39.130 0.00 0.00 36.92 3.16
2270 2762 8.028938 GCAACAAATGGTTCTTTACATATGACT 58.971 33.333 10.38 0.00 37.72 3.41
2382 2874 6.873997 TCTGTGAGTCTTCTGTTTCTTACAA 58.126 36.000 0.00 0.00 36.02 2.41
2385 2877 8.506168 TGTGAGTCTTCTGTTTCTTACAAATT 57.494 30.769 0.00 0.00 36.02 1.82
2516 3008 2.549198 CCGTATACTCGCTCGGCCA 61.549 63.158 2.24 0.00 36.68 5.36
2566 3060 1.078001 CCGCCCCGACCACTATTTT 60.078 57.895 0.00 0.00 0.00 1.82
2609 3103 1.444672 GTCGAAACCCTATCCCCCG 59.555 63.158 0.00 0.00 0.00 5.73
2610 3104 2.110420 CGAAACCCTATCCCCCGC 59.890 66.667 0.00 0.00 0.00 6.13
2613 3107 3.974296 AAACCCTATCCCCCGCCCA 62.974 63.158 0.00 0.00 0.00 5.36
2614 3108 3.749947 AACCCTATCCCCCGCCCAT 62.750 63.158 0.00 0.00 0.00 4.00
2658 3158 1.234615 CCCACCGCACATTTCTCGTT 61.235 55.000 0.00 0.00 0.00 3.85
2660 3160 0.110238 CACCGCACATTTCTCGTTGG 60.110 55.000 0.00 0.00 0.00 3.77
2745 3245 3.969250 GAGCAAATCCGGCGGTGGA 62.969 63.158 27.32 7.13 43.58 4.02
2933 3433 0.895530 TCGGTGGCGAGATCTTCTTT 59.104 50.000 0.00 0.00 0.00 2.52
2962 3462 3.855853 GCTCCTCCTCTTCCGGCC 61.856 72.222 0.00 0.00 0.00 6.13
3014 3524 3.069318 GGAGCCGGAAGAGGTCGT 61.069 66.667 5.05 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.151144 GGGCAGTTGTATAGAAATTTGACAGT 59.849 38.462 0.00 0.00 0.00 3.55
1 2 6.375455 AGGGCAGTTGTATAGAAATTTGACAG 59.625 38.462 0.00 0.00 0.00 3.51
2 3 6.245408 AGGGCAGTTGTATAGAAATTTGACA 58.755 36.000 0.00 0.00 0.00 3.58
3 4 6.759497 AGGGCAGTTGTATAGAAATTTGAC 57.241 37.500 0.00 0.00 0.00 3.18
26 27 4.077982 AGGGTAAGGGGATGAATCTGACTA 60.078 45.833 0.00 0.00 0.00 2.59
35 36 1.696314 GGGCAGGGTAAGGGGATGA 60.696 63.158 0.00 0.00 0.00 2.92
118 122 8.899427 TTTATTTGATGTTGCTTGAATTCCAA 57.101 26.923 2.27 0.00 0.00 3.53
150 156 2.285069 TGGTGACCGGGGCATAGT 60.285 61.111 5.51 0.00 0.00 2.12
211 236 3.966543 GGTGGGGTGAGGGTGTGG 61.967 72.222 0.00 0.00 0.00 4.17
235 286 1.064208 GAGAGCTCGACGTTGCTATGA 59.936 52.381 8.37 0.00 39.91 2.15
358 637 1.014352 GTGGAGTTCGTGTTTGCAGT 58.986 50.000 0.00 0.00 0.00 4.40
383 662 1.674322 CCGGTTGCGGTCCAGATTT 60.674 57.895 0.00 0.00 0.00 2.17
404 683 1.002011 GCACTTGTTCTCCCTCCCC 60.002 63.158 0.00 0.00 0.00 4.81
416 718 0.322546 GAGGTAACCCCTGGCACTTG 60.323 60.000 0.00 0.00 46.51 3.16
418 720 1.923909 GGAGGTAACCCCTGGCACT 60.924 63.158 0.00 0.00 46.51 4.40
552 857 4.469469 TTCATTTGAACTTCCCCCTCTT 57.531 40.909 0.00 0.00 0.00 2.85
583 894 1.550130 TTCGAAACCTCCCCATCGCT 61.550 55.000 0.00 0.00 35.39 4.93
667 990 3.543268 GATAATGCACGACGCGCGG 62.543 63.158 35.22 19.92 46.97 6.46
668 991 2.128492 GATAATGCACGACGCGCG 60.128 61.111 30.96 30.96 46.97 6.86
669 992 1.199370 GAGATAATGCACGACGCGC 59.801 57.895 5.73 0.00 46.97 6.86
670 993 1.200474 ACGAGATAATGCACGACGCG 61.200 55.000 3.53 3.53 46.97 6.01
680 1003 0.029834 ACGCGGCGTTACGAGATAAT 59.970 50.000 24.03 0.00 36.35 1.28
696 1019 2.202892 GATCCCTTCCGACCACGC 60.203 66.667 0.00 0.00 38.29 5.34
698 1021 2.908796 GGGATCCCTTCCGACCAC 59.091 66.667 24.69 0.00 46.52 4.16
767 1092 2.037136 GCTGTGCTGGATCGCTGTT 61.037 57.895 0.00 0.00 0.00 3.16
781 1106 3.312736 AATTATCAAATCCCCCGCTGT 57.687 42.857 0.00 0.00 0.00 4.40
786 1111 2.371841 GGGGCAAATTATCAAATCCCCC 59.628 50.000 2.02 0.00 39.43 5.40
787 1112 3.044894 TGGGGCAAATTATCAAATCCCC 58.955 45.455 6.49 6.49 43.06 4.81
788 1113 3.711190 AGTGGGGCAAATTATCAAATCCC 59.289 43.478 0.00 0.00 0.00 3.85
789 1114 5.357742 AAGTGGGGCAAATTATCAAATCC 57.642 39.130 0.00 0.00 0.00 3.01
790 1115 7.327214 TGTAAAGTGGGGCAAATTATCAAATC 58.673 34.615 0.00 0.00 0.00 2.17
791 1116 7.251321 TGTAAAGTGGGGCAAATTATCAAAT 57.749 32.000 0.00 0.00 0.00 2.32
792 1117 6.672266 TGTAAAGTGGGGCAAATTATCAAA 57.328 33.333 0.00 0.00 0.00 2.69
793 1118 6.295575 CCTTGTAAAGTGGGGCAAATTATCAA 60.296 38.462 0.00 0.00 44.25 2.57
794 1119 5.186797 CCTTGTAAAGTGGGGCAAATTATCA 59.813 40.000 0.00 0.00 44.25 2.15
795 1120 5.395214 CCCTTGTAAAGTGGGGCAAATTATC 60.395 44.000 0.00 0.00 44.25 1.75
796 1121 4.469586 CCCTTGTAAAGTGGGGCAAATTAT 59.530 41.667 0.00 0.00 44.25 1.28
797 1122 3.835395 CCCTTGTAAAGTGGGGCAAATTA 59.165 43.478 0.00 0.00 44.25 1.40
798 1123 2.637382 CCCTTGTAAAGTGGGGCAAATT 59.363 45.455 0.00 0.00 44.25 1.82
799 1124 2.256306 CCCTTGTAAAGTGGGGCAAAT 58.744 47.619 0.00 0.00 44.25 2.32
800 1125 1.710816 CCCTTGTAAAGTGGGGCAAA 58.289 50.000 0.00 0.00 44.25 3.68
801 1126 3.448469 CCCTTGTAAAGTGGGGCAA 57.552 52.632 0.00 0.00 44.25 4.52
805 1130 2.952116 TCAAACCCCTTGTAAAGTGGG 58.048 47.619 10.35 10.35 46.66 4.61
807 1132 4.827284 AGTCATCAAACCCCTTGTAAAGTG 59.173 41.667 0.00 0.00 44.25 3.16
808 1133 5.061721 AGTCATCAAACCCCTTGTAAAGT 57.938 39.130 0.00 0.00 44.25 2.66
809 1134 5.534654 TCAAGTCATCAAACCCCTTGTAAAG 59.465 40.000 0.00 0.00 45.69 1.85
810 1135 5.300792 GTCAAGTCATCAAACCCCTTGTAAA 59.699 40.000 0.00 0.00 36.34 2.01
811 1136 4.825085 GTCAAGTCATCAAACCCCTTGTAA 59.175 41.667 0.00 0.00 36.34 2.41
812 1137 4.394729 GTCAAGTCATCAAACCCCTTGTA 58.605 43.478 0.00 0.00 36.34 2.41
813 1138 3.222603 GTCAAGTCATCAAACCCCTTGT 58.777 45.455 0.00 0.00 36.34 3.16
814 1139 2.558359 GGTCAAGTCATCAAACCCCTTG 59.442 50.000 0.00 0.00 35.09 3.61
815 1140 2.447047 AGGTCAAGTCATCAAACCCCTT 59.553 45.455 0.00 0.00 0.00 3.95
816 1141 2.065799 AGGTCAAGTCATCAAACCCCT 58.934 47.619 0.00 0.00 0.00 4.79
817 1142 2.586648 AGGTCAAGTCATCAAACCCC 57.413 50.000 0.00 0.00 0.00 4.95
818 1143 4.843728 TCATAGGTCAAGTCATCAAACCC 58.156 43.478 0.00 0.00 0.00 4.11
819 1144 6.375455 ACAATCATAGGTCAAGTCATCAAACC 59.625 38.462 0.00 0.00 0.00 3.27
820 1145 7.335422 AGACAATCATAGGTCAAGTCATCAAAC 59.665 37.037 0.00 0.00 36.50 2.93
821 1146 7.397221 AGACAATCATAGGTCAAGTCATCAAA 58.603 34.615 0.00 0.00 36.50 2.69
822 1147 6.950842 AGACAATCATAGGTCAAGTCATCAA 58.049 36.000 0.00 0.00 36.50 2.57
823 1148 6.155049 TGAGACAATCATAGGTCAAGTCATCA 59.845 38.462 0.00 0.00 36.50 3.07
824 1149 6.577103 TGAGACAATCATAGGTCAAGTCATC 58.423 40.000 0.00 0.00 36.50 2.92
825 1150 6.550938 TGAGACAATCATAGGTCAAGTCAT 57.449 37.500 0.00 0.00 36.50 3.06
826 1151 6.358974 TTGAGACAATCATAGGTCAAGTCA 57.641 37.500 0.00 0.00 37.89 3.41
827 1152 7.010923 GTCATTGAGACAATCATAGGTCAAGTC 59.989 40.741 0.00 0.00 46.77 3.01
828 1153 6.820656 GTCATTGAGACAATCATAGGTCAAGT 59.179 38.462 0.00 0.00 46.77 3.16
829 1154 7.244166 GTCATTGAGACAATCATAGGTCAAG 57.756 40.000 0.00 0.00 46.77 3.02
843 1168 3.453831 CCAGGGCAACTGTCATTGAGAC 61.454 54.545 6.86 0.00 46.06 3.36
844 1169 1.271543 CCAGGGCAACTGTCATTGAGA 60.272 52.381 6.86 0.00 46.06 3.27
845 1170 1.171308 CCAGGGCAACTGTCATTGAG 58.829 55.000 6.86 0.00 46.06 3.02
846 1171 0.251297 CCCAGGGCAACTGTCATTGA 60.251 55.000 0.00 0.00 46.06 2.57
847 1172 2.269978 CCCAGGGCAACTGTCATTG 58.730 57.895 0.00 0.00 46.06 2.82
848 1173 4.850193 CCCAGGGCAACTGTCATT 57.150 55.556 0.00 0.00 46.06 2.57
866 1191 1.983119 TAAGAGGCTGCCGAATGGGG 61.983 60.000 13.96 0.00 35.78 4.96
867 1192 0.533755 CTAAGAGGCTGCCGAATGGG 60.534 60.000 13.96 0.00 39.58 4.00
868 1193 0.533755 CCTAAGAGGCTGCCGAATGG 60.534 60.000 13.96 9.46 38.77 3.16
869 1194 0.533755 CCCTAAGAGGCTGCCGAATG 60.534 60.000 13.96 4.03 32.73 2.67
870 1195 1.700042 CCCCTAAGAGGCTGCCGAAT 61.700 60.000 13.96 5.71 32.73 3.34
871 1196 2.367202 CCCCTAAGAGGCTGCCGAA 61.367 63.158 13.96 0.00 32.73 4.30
872 1197 2.764128 CCCCTAAGAGGCTGCCGA 60.764 66.667 13.96 0.00 32.73 5.54
873 1198 1.700042 ATTCCCCTAAGAGGCTGCCG 61.700 60.000 13.96 0.00 32.73 5.69
874 1199 1.435256 TATTCCCCTAAGAGGCTGCC 58.565 55.000 11.65 11.65 32.73 4.85
875 1200 3.577805 TTTATTCCCCTAAGAGGCTGC 57.422 47.619 0.00 0.00 32.73 5.25
876 1201 5.310409 TCATTTATTCCCCTAAGAGGCTG 57.690 43.478 0.00 0.00 32.73 4.85
877 1202 5.612688 TGATCATTTATTCCCCTAAGAGGCT 59.387 40.000 0.00 0.00 32.73 4.58
878 1203 5.880901 TGATCATTTATTCCCCTAAGAGGC 58.119 41.667 0.00 0.00 32.73 4.70
879 1204 8.800332 CATTTGATCATTTATTCCCCTAAGAGG 58.200 37.037 0.00 0.00 34.30 3.69
880 1205 8.800332 CCATTTGATCATTTATTCCCCTAAGAG 58.200 37.037 0.00 0.00 0.00 2.85
881 1206 8.510283 TCCATTTGATCATTTATTCCCCTAAGA 58.490 33.333 0.00 0.00 0.00 2.10
882 1207 8.710749 TCCATTTGATCATTTATTCCCCTAAG 57.289 34.615 0.00 0.00 0.00 2.18
883 1208 8.510283 TCTCCATTTGATCATTTATTCCCCTAA 58.490 33.333 0.00 0.00 0.00 2.69
884 1209 8.056088 TCTCCATTTGATCATTTATTCCCCTA 57.944 34.615 0.00 0.00 0.00 3.53
885 1210 6.925934 TCTCCATTTGATCATTTATTCCCCT 58.074 36.000 0.00 0.00 0.00 4.79
886 1211 7.601705 TTCTCCATTTGATCATTTATTCCCC 57.398 36.000 0.00 0.00 0.00 4.81
896 1221 8.632679 GCCATACTTTATTTCTCCATTTGATCA 58.367 33.333 0.00 0.00 0.00 2.92
897 1222 8.632679 TGCCATACTTTATTTCTCCATTTGATC 58.367 33.333 0.00 0.00 0.00 2.92
898 1223 8.537728 TGCCATACTTTATTTCTCCATTTGAT 57.462 30.769 0.00 0.00 0.00 2.57
899 1224 7.953005 TGCCATACTTTATTTCTCCATTTGA 57.047 32.000 0.00 0.00 0.00 2.69
900 1225 9.434420 TTTTGCCATACTTTATTTCTCCATTTG 57.566 29.630 0.00 0.00 0.00 2.32
901 1226 9.657419 CTTTTGCCATACTTTATTTCTCCATTT 57.343 29.630 0.00 0.00 0.00 2.32
902 1227 9.034800 TCTTTTGCCATACTTTATTTCTCCATT 57.965 29.630 0.00 0.00 0.00 3.16
903 1228 8.593945 TCTTTTGCCATACTTTATTTCTCCAT 57.406 30.769 0.00 0.00 0.00 3.41
904 1229 8.593945 ATCTTTTGCCATACTTTATTTCTCCA 57.406 30.769 0.00 0.00 0.00 3.86
905 1230 8.686334 TGATCTTTTGCCATACTTTATTTCTCC 58.314 33.333 0.00 0.00 0.00 3.71
914 1239 9.002600 GGAAAAATTTGATCTTTTGCCATACTT 57.997 29.630 9.74 0.00 39.95 2.24
915 1240 7.607607 GGGAAAAATTTGATCTTTTGCCATACT 59.392 33.333 17.92 0.00 46.53 2.12
916 1241 7.751732 GGGAAAAATTTGATCTTTTGCCATAC 58.248 34.615 17.92 1.23 46.53 2.39
917 1242 7.920160 GGGAAAAATTTGATCTTTTGCCATA 57.080 32.000 17.92 0.00 46.53 2.74
918 1243 6.822667 GGGAAAAATTTGATCTTTTGCCAT 57.177 33.333 17.92 0.00 46.53 4.40
921 1246 6.912051 GTGTTGGGAAAAATTTGATCTTTTGC 59.088 34.615 0.00 0.00 33.54 3.68
922 1247 7.125113 CGTGTTGGGAAAAATTTGATCTTTTG 58.875 34.615 0.00 0.00 0.00 2.44
923 1248 6.238347 GCGTGTTGGGAAAAATTTGATCTTTT 60.238 34.615 0.00 0.00 0.00 2.27
924 1249 5.236263 GCGTGTTGGGAAAAATTTGATCTTT 59.764 36.000 0.00 0.00 0.00 2.52
925 1250 4.749598 GCGTGTTGGGAAAAATTTGATCTT 59.250 37.500 0.00 0.00 0.00 2.40
926 1251 4.306600 GCGTGTTGGGAAAAATTTGATCT 58.693 39.130 0.00 0.00 0.00 2.75
927 1252 3.121113 CGCGTGTTGGGAAAAATTTGATC 59.879 43.478 0.00 0.00 0.00 2.92
928 1253 3.056304 CGCGTGTTGGGAAAAATTTGAT 58.944 40.909 0.00 0.00 0.00 2.57
929 1254 2.099263 TCGCGTGTTGGGAAAAATTTGA 59.901 40.909 5.77 0.00 36.47 2.69
930 1255 2.464865 TCGCGTGTTGGGAAAAATTTG 58.535 42.857 5.77 0.00 36.47 2.32
931 1256 2.873133 TCGCGTGTTGGGAAAAATTT 57.127 40.000 5.77 0.00 36.47 1.82
932 1257 3.378911 AATCGCGTGTTGGGAAAAATT 57.621 38.095 5.77 0.00 43.46 1.82
933 1258 4.216687 TCTTAATCGCGTGTTGGGAAAAAT 59.783 37.500 5.77 0.00 43.46 1.82
934 1259 3.564644 TCTTAATCGCGTGTTGGGAAAAA 59.435 39.130 5.77 0.00 43.46 1.94
935 1260 3.139850 TCTTAATCGCGTGTTGGGAAAA 58.860 40.909 5.77 0.00 43.46 2.29
936 1261 2.768698 TCTTAATCGCGTGTTGGGAAA 58.231 42.857 5.77 0.00 43.46 3.13
937 1262 2.459060 TCTTAATCGCGTGTTGGGAA 57.541 45.000 5.77 0.00 43.46 3.97
938 1263 2.459060 TTCTTAATCGCGTGTTGGGA 57.541 45.000 5.77 3.29 44.46 4.37
939 1264 3.757745 AATTCTTAATCGCGTGTTGGG 57.242 42.857 5.77 1.02 0.00 4.12
940 1265 3.851403 CCAAATTCTTAATCGCGTGTTGG 59.149 43.478 5.77 4.30 0.00 3.77
941 1266 3.851403 CCCAAATTCTTAATCGCGTGTTG 59.149 43.478 5.77 0.00 0.00 3.33
942 1267 3.754323 TCCCAAATTCTTAATCGCGTGTT 59.246 39.130 5.77 5.31 0.00 3.32
943 1268 3.340034 TCCCAAATTCTTAATCGCGTGT 58.660 40.909 5.77 0.00 0.00 4.49
944 1269 4.349663 TTCCCAAATTCTTAATCGCGTG 57.650 40.909 5.77 0.00 0.00 5.34
945 1270 5.379732 TTTTCCCAAATTCTTAATCGCGT 57.620 34.783 5.77 0.00 0.00 6.01
946 1271 7.979115 TTATTTTCCCAAATTCTTAATCGCG 57.021 32.000 0.00 0.00 34.29 5.87
952 1277 9.699703 CGGAGTTTTTATTTTCCCAAATTCTTA 57.300 29.630 0.00 0.00 34.29 2.10
953 1278 8.425703 TCGGAGTTTTTATTTTCCCAAATTCTT 58.574 29.630 0.00 0.00 34.29 2.52
954 1279 7.958088 TCGGAGTTTTTATTTTCCCAAATTCT 58.042 30.769 0.00 0.00 34.29 2.40
955 1280 8.596271 TTCGGAGTTTTTATTTTCCCAAATTC 57.404 30.769 0.00 0.00 34.29 2.17
956 1281 8.832521 GTTTCGGAGTTTTTATTTTCCCAAATT 58.167 29.630 0.00 0.00 34.29 1.82
957 1282 8.208224 AGTTTCGGAGTTTTTATTTTCCCAAAT 58.792 29.630 0.00 0.00 36.52 2.32
958 1283 7.557724 AGTTTCGGAGTTTTTATTTTCCCAAA 58.442 30.769 0.00 0.00 0.00 3.28
959 1284 7.114866 AGTTTCGGAGTTTTTATTTTCCCAA 57.885 32.000 0.00 0.00 0.00 4.12
960 1285 6.513720 CGAGTTTCGGAGTTTTTATTTTCCCA 60.514 38.462 0.00 0.00 36.00 4.37
961 1286 5.854866 CGAGTTTCGGAGTTTTTATTTTCCC 59.145 40.000 0.00 0.00 36.00 3.97
962 1287 6.906584 CGAGTTTCGGAGTTTTTATTTTCC 57.093 37.500 0.00 0.00 36.00 3.13
977 1302 0.819582 TAAGGGTAGGCCGAGTTTCG 59.180 55.000 0.00 0.00 40.07 3.46
978 1303 1.472904 GCTAAGGGTAGGCCGAGTTTC 60.473 57.143 0.00 0.00 34.97 2.78
979 1304 0.540454 GCTAAGGGTAGGCCGAGTTT 59.460 55.000 0.00 0.00 34.97 2.66
980 1305 1.673808 CGCTAAGGGTAGGCCGAGTT 61.674 60.000 0.00 0.00 34.97 3.01
981 1306 2.125961 CGCTAAGGGTAGGCCGAGT 61.126 63.158 0.00 0.00 34.97 4.18
982 1307 1.179814 ATCGCTAAGGGTAGGCCGAG 61.180 60.000 0.00 0.00 34.97 4.63
983 1308 0.111061 TATCGCTAAGGGTAGGCCGA 59.889 55.000 0.00 0.00 34.97 5.54
984 1309 0.526662 CTATCGCTAAGGGTAGGCCG 59.473 60.000 0.00 0.00 34.97 6.13
985 1310 1.545136 GACTATCGCTAAGGGTAGGCC 59.455 57.143 0.00 0.00 0.00 5.19
986 1311 1.545136 GGACTATCGCTAAGGGTAGGC 59.455 57.143 0.00 0.00 0.00 3.93
987 1312 2.872732 TGGACTATCGCTAAGGGTAGG 58.127 52.381 0.00 0.00 0.00 3.18
988 1313 5.254901 AGTATGGACTATCGCTAAGGGTAG 58.745 45.833 0.00 0.00 32.65 3.18
989 1314 5.251764 GAGTATGGACTATCGCTAAGGGTA 58.748 45.833 0.00 0.00 35.45 3.69
990 1315 4.080687 GAGTATGGACTATCGCTAAGGGT 58.919 47.826 0.00 0.00 35.45 4.34
991 1316 3.444388 GGAGTATGGACTATCGCTAAGGG 59.556 52.174 0.00 0.00 35.45 3.95
992 1317 4.079970 TGGAGTATGGACTATCGCTAAGG 58.920 47.826 0.00 0.00 35.45 2.69
993 1318 5.163602 GGATGGAGTATGGACTATCGCTAAG 60.164 48.000 0.00 0.00 35.45 2.18
994 1319 4.705507 GGATGGAGTATGGACTATCGCTAA 59.294 45.833 0.00 0.00 35.45 3.09
995 1320 4.270834 GGATGGAGTATGGACTATCGCTA 58.729 47.826 0.00 0.00 35.45 4.26
996 1321 3.093057 GGATGGAGTATGGACTATCGCT 58.907 50.000 0.00 0.00 35.45 4.93
997 1322 2.159366 CGGATGGAGTATGGACTATCGC 60.159 54.545 0.00 0.00 35.45 4.58
998 1323 2.423892 CCGGATGGAGTATGGACTATCG 59.576 54.545 0.00 0.00 35.45 2.92
999 1324 3.698289 TCCGGATGGAGTATGGACTATC 58.302 50.000 0.00 0.00 40.17 2.08
1000 1325 3.827817 TCCGGATGGAGTATGGACTAT 57.172 47.619 0.00 0.00 40.17 2.12
1029 1354 3.649277 CTCTCTGGTCGGCGGTTGG 62.649 68.421 7.21 0.00 0.00 3.77
1030 1355 2.125912 CTCTCTGGTCGGCGGTTG 60.126 66.667 7.21 0.00 0.00 3.77
1031 1356 2.600769 ACTCTCTGGTCGGCGGTT 60.601 61.111 7.21 0.00 0.00 4.44
1032 1357 3.063084 GACTCTCTGGTCGGCGGT 61.063 66.667 7.21 0.00 0.00 5.68
1033 1358 3.827898 GGACTCTCTGGTCGGCGG 61.828 72.222 7.21 0.00 37.12 6.13
1034 1359 4.180946 CGGACTCTCTGGTCGGCG 62.181 72.222 0.00 0.00 37.12 6.46
1035 1360 2.065906 GATCGGACTCTCTGGTCGGC 62.066 65.000 0.00 0.00 37.12 5.54
1036 1361 2.026522 GATCGGACTCTCTGGTCGG 58.973 63.158 0.00 0.00 37.12 4.79
1038 1363 0.941542 CTCGATCGGACTCTCTGGTC 59.058 60.000 16.41 0.00 35.66 4.02
1039 1364 0.542333 TCTCGATCGGACTCTCTGGT 59.458 55.000 16.41 0.00 0.00 4.00
1040 1365 1.669604 TTCTCGATCGGACTCTCTGG 58.330 55.000 16.41 0.00 0.00 3.86
1041 1366 3.884169 GAATTCTCGATCGGACTCTCTG 58.116 50.000 16.41 0.00 0.00 3.35
1054 1379 2.380084 TTTGGGGTCTCGAATTCTCG 57.620 50.000 3.52 0.00 46.87 4.04
1055 1380 3.408634 TGTTTTGGGGTCTCGAATTCTC 58.591 45.455 3.52 0.00 0.00 2.87
1056 1381 3.502123 TGTTTTGGGGTCTCGAATTCT 57.498 42.857 3.52 0.00 0.00 2.40
1057 1382 4.459337 AGATTGTTTTGGGGTCTCGAATTC 59.541 41.667 0.00 0.00 0.00 2.17
1058 1383 4.407365 AGATTGTTTTGGGGTCTCGAATT 58.593 39.130 0.00 0.00 0.00 2.17
1059 1384 4.010349 GAGATTGTTTTGGGGTCTCGAAT 58.990 43.478 0.00 0.00 0.00 3.34
1060 1385 3.408634 GAGATTGTTTTGGGGTCTCGAA 58.591 45.455 0.00 0.00 0.00 3.71
1061 1386 2.290071 GGAGATTGTTTTGGGGTCTCGA 60.290 50.000 0.00 0.00 36.93 4.04
1062 1387 2.084546 GGAGATTGTTTTGGGGTCTCG 58.915 52.381 0.00 0.00 36.93 4.04
1063 1388 2.084546 CGGAGATTGTTTTGGGGTCTC 58.915 52.381 0.00 0.00 35.68 3.36
1064 1389 1.886655 GCGGAGATTGTTTTGGGGTCT 60.887 52.381 0.00 0.00 0.00 3.85
1065 1390 0.526211 GCGGAGATTGTTTTGGGGTC 59.474 55.000 0.00 0.00 0.00 4.46
1066 1391 0.898326 GGCGGAGATTGTTTTGGGGT 60.898 55.000 0.00 0.00 0.00 4.95
1067 1392 0.897863 TGGCGGAGATTGTTTTGGGG 60.898 55.000 0.00 0.00 0.00 4.96
1068 1393 1.135024 CATGGCGGAGATTGTTTTGGG 60.135 52.381 0.00 0.00 0.00 4.12
1069 1394 1.736696 GCATGGCGGAGATTGTTTTGG 60.737 52.381 0.00 0.00 0.00 3.28
1070 1395 1.632422 GCATGGCGGAGATTGTTTTG 58.368 50.000 0.00 0.00 0.00 2.44
1166 1491 1.797211 GACTAGGAGATCGGTGGCGG 61.797 65.000 0.00 0.00 0.00 6.13
1196 1521 6.570378 CGCTTAAATTTGATACCCCATGATCC 60.570 42.308 0.00 0.00 0.00 3.36
1199 1548 5.441500 TCGCTTAAATTTGATACCCCATGA 58.558 37.500 0.00 0.00 0.00 3.07
1229 1578 2.584391 GCTGTCGGTCCTGGAACCT 61.584 63.158 6.08 0.00 37.15 3.50
1282 1631 1.889545 GCTTCTCTTGCCACTTCTGT 58.110 50.000 0.00 0.00 0.00 3.41
1328 1677 2.152016 ACATCGCTATCGCTACTGCTA 58.848 47.619 0.00 0.00 36.97 3.49
1417 1766 4.397417 AGAAATCAGATCCCTTGCTTTTCG 59.603 41.667 0.00 0.00 0.00 3.46
1433 1782 1.609635 TACCGGAGCCGCAGAAATCA 61.610 55.000 9.46 0.00 38.24 2.57
1516 1865 3.227147 CTCGACGCGGACATATTCTTAG 58.773 50.000 12.47 0.00 0.00 2.18
1799 2160 3.477530 GCTGTACACTTGGTTCTCCTTT 58.522 45.455 0.00 0.00 34.23 3.11
1811 2172 2.675423 TCCTCGGCGCTGTACACT 60.675 61.111 17.37 0.00 0.00 3.55
1941 2302 3.499737 GGCGAACGGGTCATGCTG 61.500 66.667 0.00 0.00 0.00 4.41
1985 2346 8.999431 TGAAGTCAATCAAATTGTTACTACTCC 58.001 33.333 0.00 0.00 41.02 3.85
2111 2494 3.909430 TGTTCAATACCTGACGTCTGAC 58.091 45.455 22.46 11.59 32.21 3.51
2112 2495 4.462834 AGATGTTCAATACCTGACGTCTGA 59.537 41.667 22.46 11.07 33.67 3.27
2113 2496 4.748892 AGATGTTCAATACCTGACGTCTG 58.251 43.478 17.92 16.32 33.67 3.51
2114 2497 5.407407 AAGATGTTCAATACCTGACGTCT 57.593 39.130 17.92 0.00 35.08 4.18
2115 2498 6.812160 AGTTAAGATGTTCAATACCTGACGTC 59.188 38.462 9.11 9.11 32.21 4.34
2116 2499 6.590292 CAGTTAAGATGTTCAATACCTGACGT 59.410 38.462 0.00 0.00 32.21 4.34
2130 2513 5.304686 TGAAACAGGGACAGTTAAGATGT 57.695 39.130 0.00 0.00 36.96 3.06
2236 2677 3.880490 AGAACCATTTGTTGCAGTAACGA 59.120 39.130 0.00 0.00 42.34 3.85
2238 2679 6.975772 TGTAAAGAACCATTTGTTGCAGTAAC 59.024 34.615 0.00 0.00 37.29 2.50
2270 2762 5.941555 ACCATGGGTAACTTTTGACAAAA 57.058 34.783 18.09 12.62 32.11 2.44
2382 2874 6.670695 AACAGAAGCCCAAATACAGAAATT 57.329 33.333 0.00 0.00 0.00 1.82
2385 2877 6.121776 TCTAACAGAAGCCCAAATACAGAA 57.878 37.500 0.00 0.00 0.00 3.02
2524 3016 0.959553 TTTGCGGGCCGTGATAAAAA 59.040 45.000 28.82 14.86 0.00 1.94
2745 3245 3.376935 CTCATGCTCGGGGTCGCTT 62.377 63.158 0.00 0.00 36.13 4.68
2793 3293 4.148825 CACTTCCTCTCCCGGCGG 62.149 72.222 21.46 21.46 0.00 6.13
2797 3297 1.192146 TTGGTCCACTTCCTCTCCCG 61.192 60.000 0.00 0.00 0.00 5.14
2801 3301 2.058675 CGGTTGGTCCACTTCCTCT 58.941 57.895 0.00 0.00 35.57 3.69
2933 3433 1.748122 GAGGAGCTCCCGACGTACA 60.748 63.158 29.54 0.00 40.87 2.90
3006 3516 1.581954 CAGCTTCACGACGACCTCT 59.418 57.895 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.