Multiple sequence alignment - TraesCS7B01G160400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G160400 chr7B 100.000 2497 0 0 1 2497 218861611 218859115 0.000000e+00 4612
1 TraesCS7B01G160400 chr7B 77.083 576 123 8 903 1472 597461715 597461143 8.610000e-85 324
2 TraesCS7B01G160400 chr6B 94.831 1006 44 5 1499 2497 575873568 575872564 0.000000e+00 1563
3 TraesCS7B01G160400 chr5B 94.732 1006 47 4 1498 2497 678419972 678418967 0.000000e+00 1559
4 TraesCS7B01G160400 chr5B 94.538 1007 49 4 1495 2497 498777554 498778558 0.000000e+00 1550
5 TraesCS7B01G160400 chr4B 94.538 1007 50 3 1495 2497 57782774 57783779 0.000000e+00 1550
6 TraesCS7B01G160400 chr4B 94.428 1005 54 2 1495 2497 42244439 42245443 0.000000e+00 1544
7 TraesCS7B01G160400 chr4B 94.605 1001 49 5 1495 2492 57759987 57760985 0.000000e+00 1544
8 TraesCS7B01G160400 chr2B 94.527 1005 52 3 1495 2497 41310197 41311200 0.000000e+00 1548
9 TraesCS7B01G160400 chr3B 94.334 1006 54 3 1495 2497 144211 145216 0.000000e+00 1539
10 TraesCS7B01G160400 chr3B 94.422 1004 51 3 1498 2497 441591849 441590847 0.000000e+00 1539
11 TraesCS7B01G160400 chr4A 87.602 734 78 8 763 1494 513121333 513120611 0.000000e+00 839
12 TraesCS7B01G160400 chr1B 84.259 756 105 9 742 1494 319895234 319895978 0.000000e+00 725
13 TraesCS7B01G160400 chr1B 80.811 740 121 16 758 1494 403424638 403423917 6.030000e-156 560
14 TraesCS7B01G160400 chr2D 83.387 626 93 10 875 1494 540966916 540967536 1.000000e-158 569
15 TraesCS7B01G160400 chr2D 82.748 626 97 10 875 1494 448149815 448149195 4.700000e-152 547
16 TraesCS7B01G160400 chr7D 75.630 595 75 36 18 601 243337731 243337196 5.370000e-57 231
17 TraesCS7B01G160400 chr3D 92.000 75 4 2 896 968 323083571 323083497 1.220000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G160400 chr7B 218859115 218861611 2496 True 4612 4612 100.000 1 2497 1 chr7B.!!$R1 2496
1 TraesCS7B01G160400 chr7B 597461143 597461715 572 True 324 324 77.083 903 1472 1 chr7B.!!$R2 569
2 TraesCS7B01G160400 chr6B 575872564 575873568 1004 True 1563 1563 94.831 1499 2497 1 chr6B.!!$R1 998
3 TraesCS7B01G160400 chr5B 678418967 678419972 1005 True 1559 1559 94.732 1498 2497 1 chr5B.!!$R1 999
4 TraesCS7B01G160400 chr5B 498777554 498778558 1004 False 1550 1550 94.538 1495 2497 1 chr5B.!!$F1 1002
5 TraesCS7B01G160400 chr4B 57782774 57783779 1005 False 1550 1550 94.538 1495 2497 1 chr4B.!!$F3 1002
6 TraesCS7B01G160400 chr4B 42244439 42245443 1004 False 1544 1544 94.428 1495 2497 1 chr4B.!!$F1 1002
7 TraesCS7B01G160400 chr4B 57759987 57760985 998 False 1544 1544 94.605 1495 2492 1 chr4B.!!$F2 997
8 TraesCS7B01G160400 chr2B 41310197 41311200 1003 False 1548 1548 94.527 1495 2497 1 chr2B.!!$F1 1002
9 TraesCS7B01G160400 chr3B 144211 145216 1005 False 1539 1539 94.334 1495 2497 1 chr3B.!!$F1 1002
10 TraesCS7B01G160400 chr3B 441590847 441591849 1002 True 1539 1539 94.422 1498 2497 1 chr3B.!!$R1 999
11 TraesCS7B01G160400 chr4A 513120611 513121333 722 True 839 839 87.602 763 1494 1 chr4A.!!$R1 731
12 TraesCS7B01G160400 chr1B 319895234 319895978 744 False 725 725 84.259 742 1494 1 chr1B.!!$F1 752
13 TraesCS7B01G160400 chr1B 403423917 403424638 721 True 560 560 80.811 758 1494 1 chr1B.!!$R1 736
14 TraesCS7B01G160400 chr2D 540966916 540967536 620 False 569 569 83.387 875 1494 1 chr2D.!!$F1 619
15 TraesCS7B01G160400 chr2D 448149195 448149815 620 True 547 547 82.748 875 1494 1 chr2D.!!$R1 619
16 TraesCS7B01G160400 chr7D 243337196 243337731 535 True 231 231 75.630 18 601 1 chr7D.!!$R1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
611 620 0.035739 TGTACTTCCACGAAAGGCCC 59.964 55.0 0.0 0.0 0.0 5.8 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2326 2362 0.395312 GAAGGTTGTTCGGAGTCCCA 59.605 55.0 2.8 0.0 0.0 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.904099 AGAGAAAGAAAAGGATAAAGAAACGA 57.096 30.769 0.00 0.00 0.00 3.85
113 115 6.625532 ACAGAAAATATTGGAAAATGGGCT 57.374 33.333 0.00 0.00 0.00 5.19
118 120 2.629017 ATTGGAAAATGGGCTGTCCT 57.371 45.000 0.00 0.00 36.20 3.85
119 121 1.631405 TTGGAAAATGGGCTGTCCTG 58.369 50.000 0.00 0.00 36.20 3.86
123 125 0.779997 AAAATGGGCTGTCCTGGTCT 59.220 50.000 0.00 0.00 36.20 3.85
124 126 0.038744 AAATGGGCTGTCCTGGTCTG 59.961 55.000 0.00 0.00 36.20 3.51
128 130 2.930562 GCTGTCCTGGTCTGGGGT 60.931 66.667 0.00 0.00 0.00 4.95
130 132 3.249189 TGTCCTGGTCTGGGGTGC 61.249 66.667 0.00 0.00 0.00 5.01
167 172 1.792949 GACTACTTGAGGCAACACACG 59.207 52.381 0.00 0.00 36.70 4.49
168 173 1.138266 ACTACTTGAGGCAACACACGT 59.862 47.619 0.00 0.00 42.10 4.49
169 174 1.792949 CTACTTGAGGCAACACACGTC 59.207 52.381 0.00 0.00 38.85 4.34
170 175 0.107897 ACTTGAGGCAACACACGTCA 60.108 50.000 0.00 0.00 34.69 4.35
171 176 1.013596 CTTGAGGCAACACACGTCAA 58.986 50.000 0.00 0.00 39.01 3.18
175 180 2.805671 TGAGGCAACACACGTCAAATAG 59.194 45.455 0.00 0.00 41.41 1.73
231 237 3.072622 GGGTTACCCTCAGTTTCTTGACT 59.927 47.826 14.22 0.00 41.34 3.41
234 240 2.576615 ACCCTCAGTTTCTTGACTTGC 58.423 47.619 0.00 0.00 0.00 4.01
242 248 3.406361 CTTGACTTGCGAGCGCGT 61.406 61.111 12.44 2.72 45.51 6.01
244 250 4.639171 TGACTTGCGAGCGCGTCA 62.639 61.111 17.36 17.36 45.51 4.35
246 252 2.938823 GACTTGCGAGCGCGTCAAA 61.939 57.895 12.44 3.27 45.51 2.69
248 254 1.860423 CTTGCGAGCGCGTCAAATG 60.860 57.895 12.44 2.34 45.51 2.32
250 256 3.788766 GCGAGCGCGTCAAATGGT 61.789 61.111 12.44 0.00 40.36 3.55
251 257 2.096406 CGAGCGCGTCAAATGGTG 59.904 61.111 8.43 0.00 0.00 4.17
252 258 2.667318 CGAGCGCGTCAAATGGTGT 61.667 57.895 8.43 0.00 0.00 4.16
253 259 1.154413 GAGCGCGTCAAATGGTGTG 60.154 57.895 8.43 0.00 0.00 3.82
254 260 2.800746 GCGCGTCAAATGGTGTGC 60.801 61.111 8.43 0.00 0.00 4.57
255 261 2.945984 CGCGTCAAATGGTGTGCT 59.054 55.556 0.00 0.00 0.00 4.40
256 262 1.154413 CGCGTCAAATGGTGTGCTC 60.154 57.895 0.00 0.00 0.00 4.26
257 263 1.840630 CGCGTCAAATGGTGTGCTCA 61.841 55.000 0.00 0.00 0.00 4.26
258 264 0.110056 GCGTCAAATGGTGTGCTCAG 60.110 55.000 0.00 0.00 0.00 3.35
259 265 1.229428 CGTCAAATGGTGTGCTCAGT 58.771 50.000 0.00 0.00 0.00 3.41
260 266 1.195448 CGTCAAATGGTGTGCTCAGTC 59.805 52.381 0.00 0.00 0.00 3.51
261 267 2.498167 GTCAAATGGTGTGCTCAGTCT 58.502 47.619 0.00 0.00 0.00 3.24
262 268 2.880890 GTCAAATGGTGTGCTCAGTCTT 59.119 45.455 0.00 0.00 0.00 3.01
268 274 1.300931 TGTGCTCAGTCTTCGCCAC 60.301 57.895 0.00 0.00 0.00 5.01
273 279 0.240145 CTCAGTCTTCGCCACGTGTA 59.760 55.000 15.65 0.00 0.00 2.90
278 284 2.048597 TTCGCCACGTGTAGCCTG 60.049 61.111 15.65 0.00 0.00 4.85
281 287 2.577059 GCCACGTGTAGCCTGCTA 59.423 61.111 15.65 0.00 0.00 3.49
282 288 1.519455 GCCACGTGTAGCCTGCTAG 60.519 63.158 15.65 0.00 0.00 3.42
299 305 2.794350 GCTAGCGCTCTCTCTGAATTTC 59.206 50.000 16.34 0.00 0.00 2.17
303 309 3.316588 AGCGCTCTCTCTGAATTTCGATA 59.683 43.478 2.64 0.00 0.00 2.92
305 311 4.089780 GCGCTCTCTCTGAATTTCGATATG 59.910 45.833 0.00 0.00 0.00 1.78
335 343 6.730960 AATTTTCTATACGCGTTTTCAGGA 57.269 33.333 20.78 0.98 0.00 3.86
342 350 7.259882 TCTATACGCGTTTTCAGGATTTAGAA 58.740 34.615 20.78 0.00 0.00 2.10
343 351 4.663636 ACGCGTTTTCAGGATTTAGAAG 57.336 40.909 5.58 0.00 0.00 2.85
382 391 1.000731 TGGCTTTTCGATTTTGCCTGG 59.999 47.619 16.34 0.00 43.57 4.45
387 396 4.318760 GCTTTTCGATTTTGCCTGGTTTTC 60.319 41.667 0.00 0.00 0.00 2.29
392 401 3.447229 CGATTTTGCCTGGTTTTCCCTAT 59.553 43.478 0.00 0.00 39.73 2.57
393 402 4.642885 CGATTTTGCCTGGTTTTCCCTATA 59.357 41.667 0.00 0.00 39.73 1.31
396 405 6.943899 TTTTGCCTGGTTTTCCCTATATTT 57.056 33.333 0.00 0.00 39.73 1.40
398 407 5.930837 TGCCTGGTTTTCCCTATATTTTG 57.069 39.130 0.00 0.00 39.73 2.44
400 409 6.494952 TGCCTGGTTTTCCCTATATTTTGTA 58.505 36.000 0.00 0.00 39.73 2.41
401 410 6.954684 TGCCTGGTTTTCCCTATATTTTGTAA 59.045 34.615 0.00 0.00 39.73 2.41
402 411 7.093684 TGCCTGGTTTTCCCTATATTTTGTAAC 60.094 37.037 0.00 0.00 39.73 2.50
403 412 7.123697 GCCTGGTTTTCCCTATATTTTGTAACT 59.876 37.037 0.00 0.00 39.73 2.24
404 413 9.031537 CCTGGTTTTCCCTATATTTTGTAACTT 57.968 33.333 0.00 0.00 39.73 2.66
438 447 7.870509 TTGCAAATGATAGTTATGCTTCTCT 57.129 32.000 0.00 0.00 37.86 3.10
441 450 6.484643 GCAAATGATAGTTATGCTTCTCTGGA 59.515 38.462 0.00 0.00 34.29 3.86
447 456 4.853007 AGTTATGCTTCTCTGGAAAGCAT 58.147 39.130 22.41 22.41 42.67 3.79
449 458 6.599445 AGTTATGCTTCTCTGGAAAGCATAT 58.401 36.000 23.55 12.36 41.76 1.78
455 464 6.830324 TGCTTCTCTGGAAAGCATATATTTGT 59.170 34.615 6.45 0.00 33.84 2.83
461 470 9.294030 CTCTGGAAAGCATATATTTGTTTTCAC 57.706 33.333 25.27 18.45 44.10 3.18
462 471 9.023962 TCTGGAAAGCATATATTTGTTTTCACT 57.976 29.630 25.27 2.46 44.10 3.41
469 478 9.177608 AGCATATATTTGTTTTCACTAGAAGCA 57.822 29.630 0.00 0.00 34.71 3.91
470 479 9.226345 GCATATATTTGTTTTCACTAGAAGCAC 57.774 33.333 0.00 0.00 34.71 4.40
471 480 9.722056 CATATATTTGTTTTCACTAGAAGCACC 57.278 33.333 0.00 0.00 34.71 5.01
472 481 7.759489 ATATTTGTTTTCACTAGAAGCACCA 57.241 32.000 0.00 0.00 34.71 4.17
473 482 4.893424 TTGTTTTCACTAGAAGCACCAC 57.107 40.909 0.00 0.00 34.71 4.16
474 483 4.150897 TGTTTTCACTAGAAGCACCACT 57.849 40.909 0.00 0.00 34.71 4.00
475 484 3.876914 TGTTTTCACTAGAAGCACCACTG 59.123 43.478 0.00 0.00 34.71 3.66
476 485 3.838244 TTTCACTAGAAGCACCACTGT 57.162 42.857 0.00 0.00 34.71 3.55
477 486 2.820059 TCACTAGAAGCACCACTGTG 57.180 50.000 0.00 0.00 45.65 3.66
514 523 8.587952 AGAAAAGAAATTTGTATTTTCACGGG 57.412 30.769 22.32 0.00 41.76 5.28
515 524 8.417884 AGAAAAGAAATTTGTATTTTCACGGGA 58.582 29.630 22.32 0.00 41.76 5.14
516 525 8.950208 AAAAGAAATTTGTATTTTCACGGGAA 57.050 26.923 0.00 0.00 35.90 3.97
517 526 8.587952 AAAGAAATTTGTATTTTCACGGGAAG 57.412 30.769 0.00 0.00 35.90 3.46
518 527 6.156519 AGAAATTTGTATTTTCACGGGAAGC 58.843 36.000 0.00 0.00 35.90 3.86
519 528 5.461032 AATTTGTATTTTCACGGGAAGCA 57.539 34.783 0.00 0.00 33.82 3.91
520 529 3.907894 TTGTATTTTCACGGGAAGCAC 57.092 42.857 0.00 0.62 33.82 4.40
521 530 2.852449 TGTATTTTCACGGGAAGCACA 58.148 42.857 0.00 3.46 33.82 4.57
522 531 3.215151 TGTATTTTCACGGGAAGCACAA 58.785 40.909 0.00 0.00 33.82 3.33
523 532 3.823873 TGTATTTTCACGGGAAGCACAAT 59.176 39.130 0.00 0.00 33.82 2.71
524 533 4.279671 TGTATTTTCACGGGAAGCACAATT 59.720 37.500 0.00 0.00 33.82 2.32
525 534 5.473846 TGTATTTTCACGGGAAGCACAATTA 59.526 36.000 0.00 0.00 33.82 1.40
526 535 5.659440 ATTTTCACGGGAAGCACAATTAT 57.341 34.783 0.00 0.00 33.82 1.28
527 536 4.433186 TTTCACGGGAAGCACAATTATG 57.567 40.909 0.00 0.00 33.82 1.90
528 537 3.066291 TCACGGGAAGCACAATTATGT 57.934 42.857 0.00 0.00 41.61 2.29
529 538 3.417101 TCACGGGAAGCACAATTATGTT 58.583 40.909 0.00 0.00 37.82 2.71
530 539 3.823873 TCACGGGAAGCACAATTATGTTT 59.176 39.130 0.00 0.00 37.82 2.83
531 540 4.083003 TCACGGGAAGCACAATTATGTTTC 60.083 41.667 4.86 4.86 37.82 2.78
532 541 4.079253 ACGGGAAGCACAATTATGTTTCT 58.921 39.130 12.24 0.00 39.16 2.52
533 542 4.522789 ACGGGAAGCACAATTATGTTTCTT 59.477 37.500 12.24 0.00 39.16 2.52
534 543 4.858692 CGGGAAGCACAATTATGTTTCTTG 59.141 41.667 12.24 2.98 39.16 3.02
535 544 5.170748 GGGAAGCACAATTATGTTTCTTGG 58.829 41.667 12.24 0.00 39.16 3.61
536 545 5.047377 GGGAAGCACAATTATGTTTCTTGGA 60.047 40.000 12.24 0.00 39.16 3.53
537 546 6.454795 GGAAGCACAATTATGTTTCTTGGAA 58.545 36.000 12.24 0.00 39.16 3.53
538 547 6.928492 GGAAGCACAATTATGTTTCTTGGAAA 59.072 34.615 12.24 0.00 39.16 3.13
539 548 7.116805 GGAAGCACAATTATGTTTCTTGGAAAG 59.883 37.037 12.24 0.00 41.30 2.62
540 549 7.288810 AGCACAATTATGTTTCTTGGAAAGA 57.711 32.000 0.00 0.00 45.03 2.52
558 567 9.921637 TTGGAAAGAAACGAAAAATATATGCTT 57.078 25.926 0.00 0.00 0.00 3.91
559 568 9.567848 TGGAAAGAAACGAAAAATATATGCTTC 57.432 29.630 0.00 0.00 0.00 3.86
560 569 9.020813 GGAAAGAAACGAAAAATATATGCTTCC 57.979 33.333 0.00 0.00 0.00 3.46
561 570 8.926715 AAAGAAACGAAAAATATATGCTTCCC 57.073 30.769 0.00 0.00 0.00 3.97
562 571 7.639113 AGAAACGAAAAATATATGCTTCCCA 57.361 32.000 0.00 0.00 0.00 4.37
563 572 7.707104 AGAAACGAAAAATATATGCTTCCCAG 58.293 34.615 0.00 0.00 0.00 4.45
564 573 7.556275 AGAAACGAAAAATATATGCTTCCCAGA 59.444 33.333 0.00 0.00 0.00 3.86
565 574 6.867662 ACGAAAAATATATGCTTCCCAGAG 57.132 37.500 0.00 0.00 0.00 3.35
566 575 6.591935 ACGAAAAATATATGCTTCCCAGAGA 58.408 36.000 0.00 0.00 0.00 3.10
567 576 7.054124 ACGAAAAATATATGCTTCCCAGAGAA 58.946 34.615 0.00 0.00 0.00 2.87
568 577 7.556275 ACGAAAAATATATGCTTCCCAGAGAAA 59.444 33.333 0.00 0.00 32.88 2.52
569 578 7.857885 CGAAAAATATATGCTTCCCAGAGAAAC 59.142 37.037 0.00 0.00 32.88 2.78
570 579 8.593945 AAAAATATATGCTTCCCAGAGAAACA 57.406 30.769 0.00 0.00 35.13 2.83
571 580 7.573968 AAATATATGCTTCCCAGAGAAACAC 57.426 36.000 0.00 0.00 33.51 3.32
572 581 2.957402 ATGCTTCCCAGAGAAACACA 57.043 45.000 0.00 0.00 33.51 3.72
573 582 2.957402 TGCTTCCCAGAGAAACACAT 57.043 45.000 0.00 0.00 32.88 3.21
574 583 4.574674 ATGCTTCCCAGAGAAACACATA 57.425 40.909 0.00 0.00 33.51 2.29
575 584 4.574674 TGCTTCCCAGAGAAACACATAT 57.425 40.909 0.00 0.00 32.88 1.78
576 585 4.922206 TGCTTCCCAGAGAAACACATATT 58.078 39.130 0.00 0.00 32.88 1.28
577 586 5.324409 TGCTTCCCAGAGAAACACATATTT 58.676 37.500 0.00 0.00 32.88 1.40
578 587 5.183713 TGCTTCCCAGAGAAACACATATTTG 59.816 40.000 0.00 0.00 32.88 2.32
579 588 5.643379 TTCCCAGAGAAACACATATTTGC 57.357 39.130 0.00 0.00 0.00 3.68
580 589 4.922206 TCCCAGAGAAACACATATTTGCT 58.078 39.130 0.00 0.00 0.00 3.91
581 590 5.324409 TCCCAGAGAAACACATATTTGCTT 58.676 37.500 0.00 0.00 0.00 3.91
582 591 5.415701 TCCCAGAGAAACACATATTTGCTTC 59.584 40.000 0.00 0.00 0.00 3.86
583 592 5.183713 CCCAGAGAAACACATATTTGCTTCA 59.816 40.000 7.54 0.00 0.00 3.02
584 593 6.320171 CCAGAGAAACACATATTTGCTTCAG 58.680 40.000 7.54 0.00 0.00 3.02
585 594 6.149973 CCAGAGAAACACATATTTGCTTCAGA 59.850 38.462 7.54 0.00 0.00 3.27
586 595 7.308770 CCAGAGAAACACATATTTGCTTCAGAA 60.309 37.037 7.54 0.00 0.00 3.02
587 596 8.077991 CAGAGAAACACATATTTGCTTCAGAAA 58.922 33.333 7.54 0.00 0.00 2.52
588 597 8.632679 AGAGAAACACATATTTGCTTCAGAAAA 58.367 29.630 7.54 0.00 0.00 2.29
589 598 9.248291 GAGAAACACATATTTGCTTCAGAAAAA 57.752 29.630 7.54 0.00 0.00 1.94
590 599 9.768662 AGAAACACATATTTGCTTCAGAAAAAT 57.231 25.926 7.54 0.00 0.00 1.82
600 609 9.860898 ATTTGCTTCAGAAAAATATGTACTTCC 57.139 29.630 0.00 0.00 0.00 3.46
601 610 7.994425 TGCTTCAGAAAAATATGTACTTCCA 57.006 32.000 0.00 0.00 0.00 3.53
602 611 7.816640 TGCTTCAGAAAAATATGTACTTCCAC 58.183 34.615 0.00 0.00 0.00 4.02
603 612 6.961554 GCTTCAGAAAAATATGTACTTCCACG 59.038 38.462 0.00 0.00 0.00 4.94
604 613 7.148474 GCTTCAGAAAAATATGTACTTCCACGA 60.148 37.037 0.00 0.00 0.00 4.35
605 614 8.610248 TTCAGAAAAATATGTACTTCCACGAA 57.390 30.769 0.00 0.00 0.00 3.85
606 615 8.610248 TCAGAAAAATATGTACTTCCACGAAA 57.390 30.769 0.00 0.00 0.00 3.46
607 616 8.717821 TCAGAAAAATATGTACTTCCACGAAAG 58.282 33.333 0.00 0.00 0.00 2.62
608 617 7.962918 CAGAAAAATATGTACTTCCACGAAAGG 59.037 37.037 0.00 0.00 0.00 3.11
609 618 5.813080 AAATATGTACTTCCACGAAAGGC 57.187 39.130 0.00 0.00 0.00 4.35
610 619 2.109425 ATGTACTTCCACGAAAGGCC 57.891 50.000 0.00 0.00 0.00 5.19
611 620 0.035739 TGTACTTCCACGAAAGGCCC 59.964 55.000 0.00 0.00 0.00 5.80
612 621 0.035739 GTACTTCCACGAAAGGCCCA 59.964 55.000 0.00 0.00 0.00 5.36
613 622 0.766131 TACTTCCACGAAAGGCCCAA 59.234 50.000 0.00 0.00 0.00 4.12
614 623 0.537371 ACTTCCACGAAAGGCCCAAG 60.537 55.000 0.00 0.00 0.00 3.61
615 624 1.866853 CTTCCACGAAAGGCCCAAGC 61.867 60.000 0.00 0.00 38.76 4.01
633 642 5.443185 CAAGCCATATGGTTGTATCAAGG 57.557 43.478 22.79 0.00 45.31 3.61
634 643 3.490348 AGCCATATGGTTGTATCAAGGC 58.510 45.455 22.79 3.95 39.82 4.35
635 644 3.139025 AGCCATATGGTTGTATCAAGGCT 59.861 43.478 22.79 6.31 44.51 4.58
636 645 3.891366 GCCATATGGTTGTATCAAGGCTT 59.109 43.478 22.79 0.00 36.72 4.35
637 646 4.261741 GCCATATGGTTGTATCAAGGCTTG 60.262 45.833 22.79 21.17 36.72 4.01
638 647 4.279169 CCATATGGTTGTATCAAGGCTTGG 59.721 45.833 25.92 8.70 0.00 3.61
639 648 1.544724 TGGTTGTATCAAGGCTTGGC 58.455 50.000 25.92 16.55 0.00 4.52
640 649 1.075374 TGGTTGTATCAAGGCTTGGCT 59.925 47.619 25.92 16.18 0.00 4.75
641 650 1.745653 GGTTGTATCAAGGCTTGGCTC 59.254 52.381 25.92 16.00 0.00 4.70
642 651 2.619074 GGTTGTATCAAGGCTTGGCTCT 60.619 50.000 25.92 11.58 0.00 4.09
643 652 2.680339 GTTGTATCAAGGCTTGGCTCTC 59.320 50.000 25.92 12.90 0.00 3.20
644 653 1.908619 TGTATCAAGGCTTGGCTCTCA 59.091 47.619 25.92 15.00 0.00 3.27
645 654 2.284190 GTATCAAGGCTTGGCTCTCAC 58.716 52.381 25.92 11.47 0.00 3.51
646 655 0.990374 ATCAAGGCTTGGCTCTCACT 59.010 50.000 25.92 0.00 0.00 3.41
647 656 0.322975 TCAAGGCTTGGCTCTCACTC 59.677 55.000 25.92 0.00 0.00 3.51
648 657 0.324285 CAAGGCTTGGCTCTCACTCT 59.676 55.000 19.55 0.00 0.00 3.24
649 658 0.612744 AAGGCTTGGCTCTCACTCTC 59.387 55.000 0.00 0.00 0.00 3.20
650 659 1.220477 GGCTTGGCTCTCACTCTCC 59.780 63.158 0.00 0.00 0.00 3.71
651 660 1.548357 GGCTTGGCTCTCACTCTCCA 61.548 60.000 0.00 0.00 0.00 3.86
652 661 0.108233 GCTTGGCTCTCACTCTCCAG 60.108 60.000 0.00 0.00 0.00 3.86
653 662 1.554836 CTTGGCTCTCACTCTCCAGA 58.445 55.000 0.00 0.00 0.00 3.86
654 663 2.109774 CTTGGCTCTCACTCTCCAGAT 58.890 52.381 0.00 0.00 0.00 2.90
655 664 2.244486 TGGCTCTCACTCTCCAGATT 57.756 50.000 0.00 0.00 0.00 2.40
656 665 3.388552 TGGCTCTCACTCTCCAGATTA 57.611 47.619 0.00 0.00 0.00 1.75
657 666 3.921104 TGGCTCTCACTCTCCAGATTAT 58.079 45.455 0.00 0.00 0.00 1.28
658 667 4.293494 TGGCTCTCACTCTCCAGATTATT 58.707 43.478 0.00 0.00 0.00 1.40
659 668 4.343526 TGGCTCTCACTCTCCAGATTATTC 59.656 45.833 0.00 0.00 0.00 1.75
660 669 4.545610 GCTCTCACTCTCCAGATTATTCG 58.454 47.826 0.00 0.00 0.00 3.34
661 670 4.558496 GCTCTCACTCTCCAGATTATTCGG 60.558 50.000 0.00 0.00 0.00 4.30
662 671 3.319405 TCTCACTCTCCAGATTATTCGGC 59.681 47.826 0.00 0.00 0.00 5.54
663 672 3.300388 TCACTCTCCAGATTATTCGGCT 58.700 45.455 0.00 0.00 0.00 5.52
664 673 3.319405 TCACTCTCCAGATTATTCGGCTC 59.681 47.826 0.00 0.00 0.00 4.70
665 674 3.068732 CACTCTCCAGATTATTCGGCTCA 59.931 47.826 0.00 0.00 0.00 4.26
666 675 3.900601 ACTCTCCAGATTATTCGGCTCAT 59.099 43.478 0.00 0.00 0.00 2.90
667 676 4.244066 CTCTCCAGATTATTCGGCTCATG 58.756 47.826 0.00 0.00 0.00 3.07
668 677 3.897505 TCTCCAGATTATTCGGCTCATGA 59.102 43.478 0.00 0.00 0.00 3.07
669 678 4.344968 TCTCCAGATTATTCGGCTCATGAA 59.655 41.667 0.00 0.00 0.00 2.57
670 679 5.034852 TCCAGATTATTCGGCTCATGAAA 57.965 39.130 0.00 0.00 0.00 2.69
671 680 4.816385 TCCAGATTATTCGGCTCATGAAAC 59.184 41.667 0.00 0.00 0.00 2.78
672 681 4.818546 CCAGATTATTCGGCTCATGAAACT 59.181 41.667 0.00 0.00 0.00 2.66
673 682 5.991606 CCAGATTATTCGGCTCATGAAACTA 59.008 40.000 0.00 0.00 0.00 2.24
674 683 6.146837 CCAGATTATTCGGCTCATGAAACTAG 59.853 42.308 0.00 0.00 0.00 2.57
675 684 6.925718 CAGATTATTCGGCTCATGAAACTAGA 59.074 38.462 0.00 0.00 0.00 2.43
676 685 7.439356 CAGATTATTCGGCTCATGAAACTAGAA 59.561 37.037 0.00 3.62 0.00 2.10
677 686 6.903883 TTATTCGGCTCATGAAACTAGAAC 57.096 37.500 0.00 0.00 0.00 3.01
678 687 3.247006 TCGGCTCATGAAACTAGAACC 57.753 47.619 0.00 0.00 0.00 3.62
679 688 2.565391 TCGGCTCATGAAACTAGAACCA 59.435 45.455 0.00 0.00 0.00 3.67
680 689 3.197766 TCGGCTCATGAAACTAGAACCAT 59.802 43.478 0.00 0.00 0.00 3.55
681 690 3.941483 CGGCTCATGAAACTAGAACCATT 59.059 43.478 0.00 0.00 0.00 3.16
682 691 4.034510 CGGCTCATGAAACTAGAACCATTC 59.965 45.833 0.00 0.00 0.00 2.67
683 692 4.034510 GGCTCATGAAACTAGAACCATTCG 59.965 45.833 0.00 0.00 34.02 3.34
684 693 4.631813 GCTCATGAAACTAGAACCATTCGT 59.368 41.667 0.00 0.00 34.02 3.85
685 694 5.220491 GCTCATGAAACTAGAACCATTCGTC 60.220 44.000 0.00 0.00 34.02 4.20
686 695 6.037786 TCATGAAACTAGAACCATTCGTCT 57.962 37.500 0.00 0.00 34.02 4.18
687 696 7.165460 TCATGAAACTAGAACCATTCGTCTA 57.835 36.000 0.00 0.00 34.02 2.59
688 697 7.782049 TCATGAAACTAGAACCATTCGTCTAT 58.218 34.615 0.00 0.00 34.02 1.98
689 698 8.909923 TCATGAAACTAGAACCATTCGTCTATA 58.090 33.333 0.00 0.00 34.02 1.31
690 699 9.529325 CATGAAACTAGAACCATTCGTCTATAA 57.471 33.333 0.00 0.00 34.02 0.98
691 700 8.922058 TGAAACTAGAACCATTCGTCTATAAC 57.078 34.615 0.00 0.00 34.02 1.89
692 701 8.525316 TGAAACTAGAACCATTCGTCTATAACA 58.475 33.333 0.00 0.00 34.02 2.41
693 702 8.699283 AAACTAGAACCATTCGTCTATAACAC 57.301 34.615 0.00 0.00 34.02 3.32
694 703 6.803642 ACTAGAACCATTCGTCTATAACACC 58.196 40.000 0.00 0.00 34.02 4.16
695 704 5.670792 AGAACCATTCGTCTATAACACCA 57.329 39.130 0.00 0.00 34.02 4.17
696 705 5.661458 AGAACCATTCGTCTATAACACCAG 58.339 41.667 0.00 0.00 34.02 4.00
697 706 5.187186 AGAACCATTCGTCTATAACACCAGT 59.813 40.000 0.00 0.00 34.02 4.00
698 707 6.379133 AGAACCATTCGTCTATAACACCAGTA 59.621 38.462 0.00 0.00 34.02 2.74
699 708 5.899299 ACCATTCGTCTATAACACCAGTAC 58.101 41.667 0.00 0.00 0.00 2.73
700 709 5.419788 ACCATTCGTCTATAACACCAGTACA 59.580 40.000 0.00 0.00 0.00 2.90
701 710 5.747197 CCATTCGTCTATAACACCAGTACAC 59.253 44.000 0.00 0.00 0.00 2.90
702 711 4.970662 TCGTCTATAACACCAGTACACC 57.029 45.455 0.00 0.00 0.00 4.16
703 712 4.334552 TCGTCTATAACACCAGTACACCA 58.665 43.478 0.00 0.00 0.00 4.17
704 713 4.156556 TCGTCTATAACACCAGTACACCAC 59.843 45.833 0.00 0.00 0.00 4.16
705 714 4.676196 CGTCTATAACACCAGTACACCACC 60.676 50.000 0.00 0.00 0.00 4.61
706 715 4.465305 GTCTATAACACCAGTACACCACCT 59.535 45.833 0.00 0.00 0.00 4.00
707 716 5.653769 GTCTATAACACCAGTACACCACCTA 59.346 44.000 0.00 0.00 0.00 3.08
708 717 5.889853 TCTATAACACCAGTACACCACCTAG 59.110 44.000 0.00 0.00 0.00 3.02
709 718 1.640917 ACACCAGTACACCACCTAGG 58.359 55.000 7.41 7.41 45.67 3.02
710 719 0.249398 CACCAGTACACCACCTAGGC 59.751 60.000 9.30 0.00 43.14 3.93
711 720 1.255667 ACCAGTACACCACCTAGGCG 61.256 60.000 9.30 0.00 43.14 5.52
712 721 0.968901 CCAGTACACCACCTAGGCGA 60.969 60.000 9.30 0.00 43.14 5.54
713 722 0.172803 CAGTACACCACCTAGGCGAC 59.827 60.000 9.30 0.00 43.14 5.19
714 723 0.039326 AGTACACCACCTAGGCGACT 59.961 55.000 9.30 0.00 43.14 4.18
715 724 0.893447 GTACACCACCTAGGCGACTT 59.107 55.000 9.30 0.00 43.14 3.01
716 725 0.892755 TACACCACCTAGGCGACTTG 59.107 55.000 9.30 0.00 43.14 3.16
724 733 2.918712 CTAGGCGACTTGGATTCCAT 57.081 50.000 6.15 0.00 43.67 3.41
726 735 4.336889 CTAGGCGACTTGGATTCCATAA 57.663 45.455 6.15 0.00 43.67 1.90
727 736 3.864789 AGGCGACTTGGATTCCATAAT 57.135 42.857 6.15 0.00 37.44 1.28
728 737 4.974645 AGGCGACTTGGATTCCATAATA 57.025 40.909 6.15 0.00 37.44 0.98
729 738 5.304686 AGGCGACTTGGATTCCATAATAA 57.695 39.130 6.15 0.00 37.44 1.40
730 739 5.690865 AGGCGACTTGGATTCCATAATAAA 58.309 37.500 6.15 0.00 37.44 1.40
731 740 5.765182 AGGCGACTTGGATTCCATAATAAAG 59.235 40.000 6.15 2.22 37.44 1.85
732 741 5.531287 GGCGACTTGGATTCCATAATAAAGT 59.469 40.000 6.15 5.69 35.95 2.66
733 742 6.430451 GCGACTTGGATTCCATAATAAAGTG 58.570 40.000 6.15 2.97 34.54 3.16
734 743 6.038271 GCGACTTGGATTCCATAATAAAGTGT 59.962 38.462 6.15 0.00 34.54 3.55
735 744 7.409697 CGACTTGGATTCCATAATAAAGTGTG 58.590 38.462 6.15 0.00 34.54 3.82
736 745 7.467267 CGACTTGGATTCCATAATAAAGTGTGG 60.467 40.741 6.15 0.00 34.54 4.17
737 746 7.182060 ACTTGGATTCCATAATAAAGTGTGGT 58.818 34.615 6.15 0.00 33.76 4.16
738 747 7.122650 ACTTGGATTCCATAATAAAGTGTGGTG 59.877 37.037 6.15 0.00 33.76 4.17
739 748 5.890985 TGGATTCCATAATAAAGTGTGGTGG 59.109 40.000 0.00 0.00 33.47 4.61
740 749 5.221244 GGATTCCATAATAAAGTGTGGTGGC 60.221 44.000 0.00 0.00 33.47 5.01
773 782 3.328382 AGCTGTGATGGTTAGCGTAAA 57.672 42.857 0.00 0.00 42.10 2.01
775 784 3.871594 AGCTGTGATGGTTAGCGTAAATC 59.128 43.478 0.00 0.00 42.10 2.17
822 831 3.447025 ATCGCGCTAGGGTTCCTGC 62.447 63.158 5.56 0.00 34.61 4.85
830 839 3.324108 GGGTTCCTGCCCGTGGTA 61.324 66.667 0.00 0.00 39.17 3.25
831 840 2.267961 GGTTCCTGCCCGTGGTAG 59.732 66.667 1.85 1.85 35.17 3.18
832 841 2.288025 GGTTCCTGCCCGTGGTAGA 61.288 63.158 9.10 0.00 37.63 2.59
833 842 1.218316 GTTCCTGCCCGTGGTAGAG 59.782 63.158 9.10 1.51 37.63 2.43
838 847 1.229082 TGCCCGTGGTAGAGGTTCT 60.229 57.895 0.00 0.00 0.00 3.01
841 850 0.679002 CCCGTGGTAGAGGTTCTCGA 60.679 60.000 0.00 0.00 35.36 4.04
842 851 1.390565 CCGTGGTAGAGGTTCTCGAT 58.609 55.000 0.00 0.00 35.36 3.59
851 860 0.109086 AGGTTCTCGATGTCGTGCAG 60.109 55.000 2.04 0.00 40.80 4.41
856 865 3.490759 CGATGTCGTGCAGCACCC 61.491 66.667 20.16 11.13 32.00 4.61
858 867 3.612247 GATGTCGTGCAGCACCCCT 62.612 63.158 20.16 3.75 32.92 4.79
869 878 2.665000 CACCCCTGTGCAGATCGT 59.335 61.111 0.02 0.00 35.31 3.73
871 880 0.179100 CACCCCTGTGCAGATCGTAG 60.179 60.000 0.02 0.00 35.31 3.51
880 889 1.519234 CAGATCGTAGCAGCGCCAA 60.519 57.895 2.29 0.00 0.00 4.52
901 911 0.555769 ACACCACCACAAACCATCCT 59.444 50.000 0.00 0.00 0.00 3.24
912 922 5.065914 CACAAACCATCCTATCCACCATAG 58.934 45.833 0.00 0.00 35.08 2.23
921 931 0.694444 ATCCACCATAGGCCTTCCGT 60.694 55.000 12.58 0.58 37.47 4.69
928 938 1.000283 CATAGGCCTTCCGTGAGCTAG 60.000 57.143 12.58 0.00 37.47 3.42
993 1010 4.660938 GTCGCAAGGCAGGGGGTT 62.661 66.667 0.00 0.00 45.31 4.11
994 1011 3.897122 TCGCAAGGCAGGGGGTTT 61.897 61.111 0.00 0.00 38.47 3.27
995 1012 2.034999 CGCAAGGCAGGGGGTTTA 59.965 61.111 0.00 0.00 0.00 2.01
996 1013 2.046285 CGCAAGGCAGGGGGTTTAG 61.046 63.158 0.00 0.00 0.00 1.85
997 1014 2.351244 GCAAGGCAGGGGGTTTAGC 61.351 63.158 0.00 0.00 0.00 3.09
1104 1123 0.972471 GGAAGGCTTGTGAATGGGGG 60.972 60.000 3.46 0.00 0.00 5.40
1120 1139 3.171388 GGGCGGATGATCCCCAGT 61.171 66.667 17.22 0.00 38.70 4.00
1177 1197 4.313819 GGGTGATCGGACAAACCC 57.686 61.111 8.41 8.41 45.29 4.11
1242 1262 6.665680 AGGAGCTAGAGACAAACATCTTTCTA 59.334 38.462 0.00 0.00 0.00 2.10
1251 1271 8.154649 AGACAAACATCTTTCTATTCACGTTT 57.845 30.769 0.00 0.00 0.00 3.60
1290 1310 1.985116 GAGAGCGTTGGAGGAGGGT 60.985 63.158 0.00 0.00 0.00 4.34
1370 1390 4.819630 GGTGGGCGAATATGAATTCAAGTA 59.180 41.667 13.09 1.42 41.44 2.24
1446 1467 1.135527 CGGGAGAACGTATTGGTGCTA 59.864 52.381 0.00 0.00 0.00 3.49
1457 1478 5.827797 ACGTATTGGTGCTAATTTCCATGAT 59.172 36.000 0.00 0.00 0.00 2.45
1487 1508 2.443394 GGATGTCGGGCCTGATGGA 61.443 63.158 19.55 5.39 34.57 3.41
1496 1517 1.549203 GGCCTGATGGAAAAGCTTGA 58.451 50.000 0.00 0.00 34.57 3.02
1576 1597 2.856760 TCTAGCCACAAGAGAGGGAT 57.143 50.000 0.00 0.00 0.00 3.85
1724 1747 0.298115 CGCGTTCAACACACGTACAA 59.702 50.000 0.00 0.00 39.92 2.41
1758 1781 2.644299 TCCTCCTTCTTGATCCAGCAAA 59.356 45.455 0.00 0.00 0.00 3.68
2153 2188 2.673200 GCTGATGTGCCCTCTCCCA 61.673 63.158 0.00 0.00 0.00 4.37
2250 2286 1.279271 CCCAGAACAATTCCGGACTCT 59.721 52.381 1.83 0.00 28.14 3.24
2261 2297 3.675348 TCCGGACTCTAATACCCTTCA 57.325 47.619 0.00 0.00 0.00 3.02
2270 2306 8.606830 GGACTCTAATACCCTTCATCCAATATT 58.393 37.037 0.00 0.00 0.00 1.28
2326 2362 2.035193 CGTCATGTTCGGGATCTCATCT 59.965 50.000 0.00 0.00 0.00 2.90
2354 2390 2.419667 CGAACAACCTTCGGTAACCAT 58.580 47.619 0.00 0.00 38.19 3.55
2386 2422 5.084519 TCCCATAACAACTCTAGTGTCACT 58.915 41.667 10.99 10.99 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.989980 TCTCGTTTCTTTATCCTTTTCTTTCTC 58.010 33.333 0.00 0.00 0.00 2.87
3 4 8.904099 TCTCGTTTCTTTATCCTTTTCTTTCT 57.096 30.769 0.00 0.00 0.00 2.52
4 5 9.946165 TTTCTCGTTTCTTTATCCTTTTCTTTC 57.054 29.630 0.00 0.00 0.00 2.62
94 96 5.488561 AGGACAGCCCATTTTCCAATATTTT 59.511 36.000 0.00 0.00 37.41 1.82
98 100 3.364549 CAGGACAGCCCATTTTCCAATA 58.635 45.455 0.00 0.00 37.41 1.90
113 115 3.249189 GCACCCCAGACCAGGACA 61.249 66.667 0.00 0.00 0.00 4.02
139 141 1.406205 GCCTCAAGTAGTCAGGGCTTC 60.406 57.143 0.00 0.00 36.96 3.86
146 148 2.801699 CGTGTGTTGCCTCAAGTAGTCA 60.802 50.000 0.00 0.00 0.00 3.41
193 198 2.068831 ACCCTTGGATAGTTTCCCCA 57.931 50.000 0.00 0.00 44.77 4.96
231 237 2.173141 CATTTGACGCGCTCGCAA 59.827 55.556 5.73 2.75 42.06 4.85
234 240 2.096406 CACCATTTGACGCGCTCG 59.904 61.111 5.73 0.00 42.43 5.03
242 248 2.936919 AGACTGAGCACACCATTTGA 57.063 45.000 0.00 0.00 0.00 2.69
244 250 2.146342 CGAAGACTGAGCACACCATTT 58.854 47.619 0.00 0.00 0.00 2.32
246 252 0.671781 GCGAAGACTGAGCACACCAT 60.672 55.000 0.00 0.00 0.00 3.55
248 254 2.029844 GGCGAAGACTGAGCACACC 61.030 63.158 5.03 0.00 0.00 4.16
250 256 1.300931 GTGGCGAAGACTGAGCACA 60.301 57.895 5.03 0.00 34.59 4.57
251 257 2.375766 CGTGGCGAAGACTGAGCAC 61.376 63.158 5.03 0.00 34.59 4.40
252 258 2.049156 CGTGGCGAAGACTGAGCA 60.049 61.111 5.03 0.00 34.59 4.26
253 259 2.049063 ACGTGGCGAAGACTGAGC 60.049 61.111 0.00 0.00 34.59 4.26
254 260 0.240145 TACACGTGGCGAAGACTGAG 59.760 55.000 21.57 0.00 34.59 3.35
255 261 0.240145 CTACACGTGGCGAAGACTGA 59.760 55.000 21.57 0.00 34.59 3.41
256 262 1.344942 GCTACACGTGGCGAAGACTG 61.345 60.000 21.57 0.12 34.59 3.51
257 263 1.080705 GCTACACGTGGCGAAGACT 60.081 57.895 21.57 0.00 34.59 3.24
258 264 2.092882 GGCTACACGTGGCGAAGAC 61.093 63.158 21.57 9.91 38.00 3.01
259 265 2.260434 GGCTACACGTGGCGAAGA 59.740 61.111 21.57 0.00 38.00 2.87
260 266 2.094659 CAGGCTACACGTGGCGAAG 61.095 63.158 21.57 12.22 38.00 3.79
261 267 2.048597 CAGGCTACACGTGGCGAA 60.049 61.111 21.57 1.13 38.00 4.70
262 268 4.735132 GCAGGCTACACGTGGCGA 62.735 66.667 21.57 3.59 38.00 5.54
268 274 2.956964 GCGCTAGCAGGCTACACG 60.957 66.667 16.45 12.27 44.35 4.49
278 284 2.507339 AATTCAGAGAGAGCGCTAGC 57.493 50.000 11.50 4.06 45.58 3.42
281 287 1.474478 TCGAAATTCAGAGAGAGCGCT 59.526 47.619 11.27 11.27 0.00 5.92
282 288 1.914634 TCGAAATTCAGAGAGAGCGC 58.085 50.000 0.00 0.00 0.00 5.92
311 319 7.830940 TCCTGAAAACGCGTATAGAAAATTA 57.169 32.000 14.46 0.00 0.00 1.40
320 328 5.873164 ACTTCTAAATCCTGAAAACGCGTAT 59.127 36.000 14.46 4.20 0.00 3.06
370 378 1.618343 AGGGAAAACCAGGCAAAATCG 59.382 47.619 0.00 0.00 43.89 3.34
371 379 6.731292 ATATAGGGAAAACCAGGCAAAATC 57.269 37.500 0.00 0.00 43.89 2.17
411 420 9.525409 GAGAAGCATAACTATCATTTGCAAAAT 57.475 29.630 17.19 8.77 35.79 1.82
412 421 8.742777 AGAGAAGCATAACTATCATTTGCAAAA 58.257 29.630 17.19 0.11 35.79 2.44
413 422 8.186163 CAGAGAAGCATAACTATCATTTGCAAA 58.814 33.333 15.44 15.44 35.79 3.68
414 423 7.201758 CCAGAGAAGCATAACTATCATTTGCAA 60.202 37.037 0.00 0.00 35.79 4.08
415 424 6.261603 CCAGAGAAGCATAACTATCATTTGCA 59.738 38.462 0.00 0.00 35.79 4.08
416 425 6.484643 TCCAGAGAAGCATAACTATCATTTGC 59.515 38.462 0.00 0.00 0.00 3.68
421 430 6.051717 GCTTTCCAGAGAAGCATAACTATCA 58.948 40.000 4.13 0.00 46.67 2.15
447 456 8.726988 GTGGTGCTTCTAGTGAAAACAAATATA 58.273 33.333 0.00 0.00 0.00 0.86
449 458 6.770785 AGTGGTGCTTCTAGTGAAAACAAATA 59.229 34.615 0.00 0.00 0.00 1.40
455 464 3.876914 CACAGTGGTGCTTCTAGTGAAAA 59.123 43.478 0.00 0.00 38.37 2.29
458 467 2.820059 CACAGTGGTGCTTCTAGTGA 57.180 50.000 0.00 0.00 38.37 3.41
468 477 3.003068 CTTCTTCAAGAAGCACAGTGGTG 59.997 47.826 14.29 0.00 44.35 4.17
469 478 3.209410 CTTCTTCAAGAAGCACAGTGGT 58.791 45.455 14.29 0.00 44.35 4.16
470 479 3.892918 CTTCTTCAAGAAGCACAGTGG 57.107 47.619 14.29 0.00 44.35 4.00
495 504 5.923684 TGCTTCCCGTGAAAATACAAATTTC 59.076 36.000 0.00 0.00 34.12 2.17
496 505 5.694458 GTGCTTCCCGTGAAAATACAAATTT 59.306 36.000 0.00 0.00 36.87 1.82
497 506 5.221342 TGTGCTTCCCGTGAAAATACAAATT 60.221 36.000 0.00 0.00 0.00 1.82
498 507 4.279671 TGTGCTTCCCGTGAAAATACAAAT 59.720 37.500 0.00 0.00 0.00 2.32
499 508 3.632604 TGTGCTTCCCGTGAAAATACAAA 59.367 39.130 0.00 0.00 0.00 2.83
501 510 2.852449 TGTGCTTCCCGTGAAAATACA 58.148 42.857 0.00 0.00 0.00 2.29
502 511 3.907894 TTGTGCTTCCCGTGAAAATAC 57.092 42.857 0.00 0.00 0.00 1.89
503 512 6.151985 ACATAATTGTGCTTCCCGTGAAAATA 59.848 34.615 1.57 0.00 33.85 1.40
504 513 5.047377 ACATAATTGTGCTTCCCGTGAAAAT 60.047 36.000 1.57 0.00 33.85 1.82
505 514 4.279671 ACATAATTGTGCTTCCCGTGAAAA 59.720 37.500 1.57 0.00 33.85 2.29
506 515 3.823873 ACATAATTGTGCTTCCCGTGAAA 59.176 39.130 1.57 0.00 33.85 2.69
507 516 3.417101 ACATAATTGTGCTTCCCGTGAA 58.583 40.909 1.57 0.00 33.85 3.18
508 517 3.066291 ACATAATTGTGCTTCCCGTGA 57.934 42.857 1.57 0.00 33.85 4.35
509 518 3.848272 AACATAATTGTGCTTCCCGTG 57.152 42.857 1.57 0.00 35.83 4.94
510 519 4.079253 AGAAACATAATTGTGCTTCCCGT 58.921 39.130 12.93 0.00 35.83 5.28
511 520 4.701956 AGAAACATAATTGTGCTTCCCG 57.298 40.909 12.93 0.00 35.83 5.14
512 521 5.047377 TCCAAGAAACATAATTGTGCTTCCC 60.047 40.000 12.93 0.00 35.83 3.97
513 522 6.024552 TCCAAGAAACATAATTGTGCTTCC 57.975 37.500 12.93 0.00 35.83 3.46
514 523 7.867403 TCTTTCCAAGAAACATAATTGTGCTTC 59.133 33.333 9.57 9.57 32.20 3.86
515 524 7.725251 TCTTTCCAAGAAACATAATTGTGCTT 58.275 30.769 1.57 0.00 32.20 3.91
516 525 7.288810 TCTTTCCAAGAAACATAATTGTGCT 57.711 32.000 1.57 0.00 32.20 4.40
517 526 7.945033 TTCTTTCCAAGAAACATAATTGTGC 57.055 32.000 1.57 0.00 44.10 4.57
530 539 9.567848 GCATATATTTTTCGTTTCTTTCCAAGA 57.432 29.630 0.00 0.00 35.26 3.02
531 540 9.573133 AGCATATATTTTTCGTTTCTTTCCAAG 57.427 29.630 0.00 0.00 0.00 3.61
532 541 9.921637 AAGCATATATTTTTCGTTTCTTTCCAA 57.078 25.926 0.00 0.00 0.00 3.53
533 542 9.567848 GAAGCATATATTTTTCGTTTCTTTCCA 57.432 29.630 0.00 0.00 0.00 3.53
534 543 9.020813 GGAAGCATATATTTTTCGTTTCTTTCC 57.979 33.333 0.00 0.00 0.00 3.13
535 544 9.020813 GGGAAGCATATATTTTTCGTTTCTTTC 57.979 33.333 0.00 0.00 0.00 2.62
536 545 8.527810 TGGGAAGCATATATTTTTCGTTTCTTT 58.472 29.630 0.00 0.00 0.00 2.52
537 546 8.062065 TGGGAAGCATATATTTTTCGTTTCTT 57.938 30.769 0.00 0.00 0.00 2.52
538 547 7.556275 TCTGGGAAGCATATATTTTTCGTTTCT 59.444 33.333 0.00 0.00 0.00 2.52
539 548 7.703328 TCTGGGAAGCATATATTTTTCGTTTC 58.297 34.615 0.00 0.00 0.00 2.78
540 549 7.556275 TCTCTGGGAAGCATATATTTTTCGTTT 59.444 33.333 0.00 0.00 0.00 3.60
541 550 7.054124 TCTCTGGGAAGCATATATTTTTCGTT 58.946 34.615 0.00 0.00 0.00 3.85
542 551 6.591935 TCTCTGGGAAGCATATATTTTTCGT 58.408 36.000 0.00 0.00 0.00 3.85
543 552 7.496529 TTCTCTGGGAAGCATATATTTTTCG 57.503 36.000 0.00 0.00 0.00 3.46
544 553 8.686334 TGTTTCTCTGGGAAGCATATATTTTTC 58.314 33.333 2.42 0.00 39.58 2.29
545 554 8.470002 GTGTTTCTCTGGGAAGCATATATTTTT 58.530 33.333 10.06 0.00 44.54 1.94
546 555 7.615365 TGTGTTTCTCTGGGAAGCATATATTTT 59.385 33.333 10.06 0.00 44.54 1.82
547 556 7.118723 TGTGTTTCTCTGGGAAGCATATATTT 58.881 34.615 10.06 0.00 44.54 1.40
548 557 6.662755 TGTGTTTCTCTGGGAAGCATATATT 58.337 36.000 10.06 0.00 44.54 1.28
549 558 6.252599 TGTGTTTCTCTGGGAAGCATATAT 57.747 37.500 10.06 0.00 44.54 0.86
550 559 5.692115 TGTGTTTCTCTGGGAAGCATATA 57.308 39.130 10.06 0.00 44.54 0.86
551 560 4.574674 TGTGTTTCTCTGGGAAGCATAT 57.425 40.909 10.06 0.00 44.54 1.78
552 561 4.574674 ATGTGTTTCTCTGGGAAGCATA 57.425 40.909 10.06 7.99 44.54 3.14
553 562 2.957402 TGTGTTTCTCTGGGAAGCAT 57.043 45.000 10.06 0.00 44.54 3.79
554 563 2.957402 ATGTGTTTCTCTGGGAAGCA 57.043 45.000 2.42 2.42 41.61 3.91
555 564 5.644644 CAAATATGTGTTTCTCTGGGAAGC 58.355 41.667 0.00 0.00 35.16 3.86
556 565 5.416952 AGCAAATATGTGTTTCTCTGGGAAG 59.583 40.000 0.00 0.00 35.16 3.46
557 566 5.324409 AGCAAATATGTGTTTCTCTGGGAA 58.676 37.500 0.00 0.00 0.00 3.97
558 567 4.922206 AGCAAATATGTGTTTCTCTGGGA 58.078 39.130 0.00 0.00 0.00 4.37
559 568 5.183713 TGAAGCAAATATGTGTTTCTCTGGG 59.816 40.000 19.58 0.00 38.94 4.45
560 569 6.149973 TCTGAAGCAAATATGTGTTTCTCTGG 59.850 38.462 19.58 9.90 38.94 3.86
561 570 7.137490 TCTGAAGCAAATATGTGTTTCTCTG 57.863 36.000 19.58 11.77 38.94 3.35
562 571 7.750229 TTCTGAAGCAAATATGTGTTTCTCT 57.250 32.000 19.58 0.00 38.94 3.10
563 572 8.801715 TTTTCTGAAGCAAATATGTGTTTCTC 57.198 30.769 19.58 0.30 38.94 2.87
564 573 9.768662 ATTTTTCTGAAGCAAATATGTGTTTCT 57.231 25.926 19.58 0.00 38.94 2.52
574 583 9.860898 GGAAGTACATATTTTTCTGAAGCAAAT 57.139 29.630 0.00 5.63 0.00 2.32
575 584 8.855110 TGGAAGTACATATTTTTCTGAAGCAAA 58.145 29.630 0.00 0.00 0.00 3.68
576 585 8.296713 GTGGAAGTACATATTTTTCTGAAGCAA 58.703 33.333 0.00 0.00 0.00 3.91
577 586 7.360861 CGTGGAAGTACATATTTTTCTGAAGCA 60.361 37.037 0.00 0.00 0.00 3.91
578 587 6.961554 CGTGGAAGTACATATTTTTCTGAAGC 59.038 38.462 0.00 0.00 0.00 3.86
579 588 8.251750 TCGTGGAAGTACATATTTTTCTGAAG 57.748 34.615 0.00 0.00 0.00 3.02
580 589 8.610248 TTCGTGGAAGTACATATTTTTCTGAA 57.390 30.769 0.00 0.00 0.00 3.02
581 590 8.610248 TTTCGTGGAAGTACATATTTTTCTGA 57.390 30.769 0.00 0.00 0.00 3.27
582 591 7.962918 CCTTTCGTGGAAGTACATATTTTTCTG 59.037 37.037 0.00 0.00 0.00 3.02
583 592 7.361799 GCCTTTCGTGGAAGTACATATTTTTCT 60.362 37.037 0.00 0.00 0.00 2.52
584 593 6.745907 GCCTTTCGTGGAAGTACATATTTTTC 59.254 38.462 0.00 0.00 0.00 2.29
585 594 6.349860 GGCCTTTCGTGGAAGTACATATTTTT 60.350 38.462 0.00 0.00 0.00 1.94
586 595 5.124936 GGCCTTTCGTGGAAGTACATATTTT 59.875 40.000 0.00 0.00 0.00 1.82
587 596 4.638865 GGCCTTTCGTGGAAGTACATATTT 59.361 41.667 0.00 0.00 0.00 1.40
588 597 4.196971 GGCCTTTCGTGGAAGTACATATT 58.803 43.478 0.00 0.00 0.00 1.28
589 598 3.433173 GGGCCTTTCGTGGAAGTACATAT 60.433 47.826 0.84 0.00 0.00 1.78
590 599 2.093341 GGGCCTTTCGTGGAAGTACATA 60.093 50.000 0.84 0.00 0.00 2.29
591 600 1.339727 GGGCCTTTCGTGGAAGTACAT 60.340 52.381 0.84 0.00 0.00 2.29
592 601 0.035739 GGGCCTTTCGTGGAAGTACA 59.964 55.000 0.84 0.00 0.00 2.90
593 602 0.035739 TGGGCCTTTCGTGGAAGTAC 59.964 55.000 4.53 0.00 0.00 2.73
594 603 0.766131 TTGGGCCTTTCGTGGAAGTA 59.234 50.000 4.53 0.00 0.00 2.24
595 604 0.537371 CTTGGGCCTTTCGTGGAAGT 60.537 55.000 4.53 0.00 0.00 3.01
596 605 1.866853 GCTTGGGCCTTTCGTGGAAG 61.867 60.000 4.53 0.00 0.00 3.46
597 606 1.901464 GCTTGGGCCTTTCGTGGAA 60.901 57.895 4.53 0.00 0.00 3.53
598 607 2.282180 GCTTGGGCCTTTCGTGGA 60.282 61.111 4.53 0.00 0.00 4.02
608 617 2.065899 TACAACCATATGGCTTGGGC 57.934 50.000 26.76 0.00 38.64 5.36
609 618 3.831323 TGATACAACCATATGGCTTGGG 58.169 45.455 26.76 15.20 38.64 4.12
610 619 4.279169 CCTTGATACAACCATATGGCTTGG 59.721 45.833 26.76 16.52 39.32 3.61
611 620 4.261741 GCCTTGATACAACCATATGGCTTG 60.262 45.833 22.18 23.33 39.32 4.01
612 621 3.891366 GCCTTGATACAACCATATGGCTT 59.109 43.478 22.18 12.08 39.32 4.35
613 622 3.139025 AGCCTTGATACAACCATATGGCT 59.861 43.478 22.18 6.77 42.69 4.75
614 623 3.490348 AGCCTTGATACAACCATATGGC 58.510 45.455 22.18 4.76 39.32 4.40
615 624 4.279169 CCAAGCCTTGATACAACCATATGG 59.721 45.833 20.68 20.68 42.17 2.74
616 625 4.261741 GCCAAGCCTTGATACAACCATATG 60.262 45.833 5.89 0.00 0.00 1.78
617 626 3.891366 GCCAAGCCTTGATACAACCATAT 59.109 43.478 5.89 0.00 0.00 1.78
618 627 3.053693 AGCCAAGCCTTGATACAACCATA 60.054 43.478 5.89 0.00 0.00 2.74
619 628 2.102578 GCCAAGCCTTGATACAACCAT 58.897 47.619 5.89 0.00 0.00 3.55
620 629 1.075374 AGCCAAGCCTTGATACAACCA 59.925 47.619 5.89 0.00 0.00 3.67
621 630 1.745653 GAGCCAAGCCTTGATACAACC 59.254 52.381 5.89 0.00 0.00 3.77
622 631 2.680339 GAGAGCCAAGCCTTGATACAAC 59.320 50.000 5.89 0.00 0.00 3.32
623 632 2.305635 TGAGAGCCAAGCCTTGATACAA 59.694 45.455 5.89 0.00 0.00 2.41
624 633 1.908619 TGAGAGCCAAGCCTTGATACA 59.091 47.619 5.89 0.00 0.00 2.29
625 634 2.093235 AGTGAGAGCCAAGCCTTGATAC 60.093 50.000 5.89 0.00 0.00 2.24
626 635 2.169352 GAGTGAGAGCCAAGCCTTGATA 59.831 50.000 5.89 0.00 0.00 2.15
627 636 0.990374 AGTGAGAGCCAAGCCTTGAT 59.010 50.000 5.89 0.00 0.00 2.57
628 637 0.322975 GAGTGAGAGCCAAGCCTTGA 59.677 55.000 5.89 0.00 0.00 3.02
629 638 0.324285 AGAGTGAGAGCCAAGCCTTG 59.676 55.000 0.00 0.00 0.00 3.61
630 639 0.612744 GAGAGTGAGAGCCAAGCCTT 59.387 55.000 0.00 0.00 0.00 4.35
631 640 1.264045 GGAGAGTGAGAGCCAAGCCT 61.264 60.000 0.00 0.00 0.00 4.58
632 641 1.220477 GGAGAGTGAGAGCCAAGCC 59.780 63.158 0.00 0.00 0.00 4.35
633 642 0.108233 CTGGAGAGTGAGAGCCAAGC 60.108 60.000 0.00 0.00 0.00 4.01
634 643 1.554836 TCTGGAGAGTGAGAGCCAAG 58.445 55.000 0.00 0.00 0.00 3.61
635 644 2.244486 ATCTGGAGAGTGAGAGCCAA 57.756 50.000 0.00 0.00 0.00 4.52
636 645 2.244486 AATCTGGAGAGTGAGAGCCA 57.756 50.000 0.00 0.00 0.00 4.75
637 646 4.558496 CGAATAATCTGGAGAGTGAGAGCC 60.558 50.000 0.00 0.00 0.00 4.70
638 647 4.545610 CGAATAATCTGGAGAGTGAGAGC 58.454 47.826 0.00 0.00 0.00 4.09
639 648 4.558496 GCCGAATAATCTGGAGAGTGAGAG 60.558 50.000 0.00 0.00 0.00 3.20
640 649 3.319405 GCCGAATAATCTGGAGAGTGAGA 59.681 47.826 0.00 0.00 0.00 3.27
641 650 3.320541 AGCCGAATAATCTGGAGAGTGAG 59.679 47.826 0.00 0.00 0.00 3.51
642 651 3.300388 AGCCGAATAATCTGGAGAGTGA 58.700 45.455 0.00 0.00 0.00 3.41
643 652 3.068732 TGAGCCGAATAATCTGGAGAGTG 59.931 47.826 0.00 0.00 0.00 3.51
644 653 3.300388 TGAGCCGAATAATCTGGAGAGT 58.700 45.455 0.00 0.00 0.00 3.24
645 654 4.021632 TCATGAGCCGAATAATCTGGAGAG 60.022 45.833 0.00 0.00 0.00 3.20
646 655 3.897505 TCATGAGCCGAATAATCTGGAGA 59.102 43.478 0.00 0.00 0.00 3.71
647 656 4.263018 TCATGAGCCGAATAATCTGGAG 57.737 45.455 0.00 0.00 0.00 3.86
648 657 4.687901 TTCATGAGCCGAATAATCTGGA 57.312 40.909 0.00 0.00 0.00 3.86
649 658 4.818546 AGTTTCATGAGCCGAATAATCTGG 59.181 41.667 0.00 0.00 0.00 3.86
650 659 5.998454 AGTTTCATGAGCCGAATAATCTG 57.002 39.130 0.00 0.00 0.00 2.90
651 660 7.055667 TCTAGTTTCATGAGCCGAATAATCT 57.944 36.000 0.00 0.00 0.00 2.40
652 661 7.307455 GGTTCTAGTTTCATGAGCCGAATAATC 60.307 40.741 0.00 0.00 0.00 1.75
653 662 6.483640 GGTTCTAGTTTCATGAGCCGAATAAT 59.516 38.462 0.00 0.00 0.00 1.28
654 663 5.815740 GGTTCTAGTTTCATGAGCCGAATAA 59.184 40.000 0.00 0.00 0.00 1.40
655 664 5.105106 TGGTTCTAGTTTCATGAGCCGAATA 60.105 40.000 0.00 0.00 34.47 1.75
656 665 4.192317 GGTTCTAGTTTCATGAGCCGAAT 58.808 43.478 0.00 0.00 0.00 3.34
657 666 3.007506 TGGTTCTAGTTTCATGAGCCGAA 59.992 43.478 0.00 0.00 34.47 4.30
658 667 2.565391 TGGTTCTAGTTTCATGAGCCGA 59.435 45.455 0.00 0.00 34.47 5.54
659 668 2.972625 TGGTTCTAGTTTCATGAGCCG 58.027 47.619 0.00 0.00 34.47 5.52
660 669 4.034510 CGAATGGTTCTAGTTTCATGAGCC 59.965 45.833 0.00 0.00 0.00 4.70
661 670 4.631813 ACGAATGGTTCTAGTTTCATGAGC 59.368 41.667 0.00 0.00 0.00 4.26
662 671 6.102663 AGACGAATGGTTCTAGTTTCATGAG 58.897 40.000 0.00 0.00 0.00 2.90
663 672 6.037786 AGACGAATGGTTCTAGTTTCATGA 57.962 37.500 0.00 0.00 0.00 3.07
664 673 9.529325 TTATAGACGAATGGTTCTAGTTTCATG 57.471 33.333 0.00 0.00 0.00 3.07
665 674 9.530633 GTTATAGACGAATGGTTCTAGTTTCAT 57.469 33.333 0.00 0.00 0.00 2.57
666 675 8.525316 TGTTATAGACGAATGGTTCTAGTTTCA 58.475 33.333 0.00 0.00 0.00 2.69
667 676 8.805688 GTGTTATAGACGAATGGTTCTAGTTTC 58.194 37.037 0.00 0.00 0.00 2.78
668 677 7.763071 GGTGTTATAGACGAATGGTTCTAGTTT 59.237 37.037 0.00 0.00 0.00 2.66
669 678 7.093640 TGGTGTTATAGACGAATGGTTCTAGTT 60.094 37.037 0.00 0.00 0.00 2.24
670 679 6.379133 TGGTGTTATAGACGAATGGTTCTAGT 59.621 38.462 0.00 0.00 0.00 2.57
671 680 6.802608 TGGTGTTATAGACGAATGGTTCTAG 58.197 40.000 0.00 0.00 0.00 2.43
672 681 6.379133 ACTGGTGTTATAGACGAATGGTTCTA 59.621 38.462 0.00 0.00 0.00 2.10
673 682 5.187186 ACTGGTGTTATAGACGAATGGTTCT 59.813 40.000 0.00 0.00 0.00 3.01
674 683 5.416947 ACTGGTGTTATAGACGAATGGTTC 58.583 41.667 0.00 0.00 0.00 3.62
675 684 5.416271 ACTGGTGTTATAGACGAATGGTT 57.584 39.130 0.00 0.00 0.00 3.67
676 685 5.419788 TGTACTGGTGTTATAGACGAATGGT 59.580 40.000 0.00 0.00 0.00 3.55
677 686 5.747197 GTGTACTGGTGTTATAGACGAATGG 59.253 44.000 0.00 0.00 0.00 3.16
678 687 5.747197 GGTGTACTGGTGTTATAGACGAATG 59.253 44.000 0.00 0.00 0.00 2.67
679 688 5.419788 TGGTGTACTGGTGTTATAGACGAAT 59.580 40.000 0.00 0.00 0.00 3.34
680 689 4.766373 TGGTGTACTGGTGTTATAGACGAA 59.234 41.667 0.00 0.00 0.00 3.85
681 690 4.156556 GTGGTGTACTGGTGTTATAGACGA 59.843 45.833 0.00 0.00 0.00 4.20
682 691 4.418392 GTGGTGTACTGGTGTTATAGACG 58.582 47.826 0.00 0.00 0.00 4.18
683 692 4.465305 AGGTGGTGTACTGGTGTTATAGAC 59.535 45.833 0.00 0.00 0.00 2.59
684 693 4.680407 AGGTGGTGTACTGGTGTTATAGA 58.320 43.478 0.00 0.00 0.00 1.98
685 694 5.068723 CCTAGGTGGTGTACTGGTGTTATAG 59.931 48.000 0.00 0.00 0.00 1.31
686 695 4.957954 CCTAGGTGGTGTACTGGTGTTATA 59.042 45.833 0.00 0.00 0.00 0.98
687 696 3.773119 CCTAGGTGGTGTACTGGTGTTAT 59.227 47.826 0.00 0.00 0.00 1.89
688 697 3.167485 CCTAGGTGGTGTACTGGTGTTA 58.833 50.000 0.00 0.00 0.00 2.41
689 698 1.975680 CCTAGGTGGTGTACTGGTGTT 59.024 52.381 0.00 0.00 0.00 3.32
690 699 1.640917 CCTAGGTGGTGTACTGGTGT 58.359 55.000 0.00 0.00 0.00 4.16
691 700 0.249398 GCCTAGGTGGTGTACTGGTG 59.751 60.000 11.31 0.00 38.35 4.17
692 701 1.255667 CGCCTAGGTGGTGTACTGGT 61.256 60.000 15.00 0.00 41.27 4.00
693 702 0.968901 TCGCCTAGGTGGTGTACTGG 60.969 60.000 22.11 0.00 46.10 4.00
694 703 0.172803 GTCGCCTAGGTGGTGTACTG 59.827 60.000 22.11 0.00 46.10 2.74
695 704 0.039326 AGTCGCCTAGGTGGTGTACT 59.961 55.000 22.11 14.66 46.10 2.73
696 705 0.893447 AAGTCGCCTAGGTGGTGTAC 59.107 55.000 22.11 12.61 46.10 2.90
697 706 0.892755 CAAGTCGCCTAGGTGGTGTA 59.107 55.000 22.11 0.00 46.10 2.90
698 707 1.671742 CAAGTCGCCTAGGTGGTGT 59.328 57.895 22.11 4.42 46.10 4.16
700 709 0.617820 ATCCAAGTCGCCTAGGTGGT 60.618 55.000 22.11 7.37 38.35 4.16
701 710 0.541863 AATCCAAGTCGCCTAGGTGG 59.458 55.000 22.11 15.10 39.35 4.61
702 711 1.473434 GGAATCCAAGTCGCCTAGGTG 60.473 57.143 16.70 16.70 0.00 4.00
703 712 0.831307 GGAATCCAAGTCGCCTAGGT 59.169 55.000 11.31 0.00 0.00 3.08
704 713 0.830648 TGGAATCCAAGTCGCCTAGG 59.169 55.000 3.67 3.67 0.00 3.02
705 714 2.918712 ATGGAATCCAAGTCGCCTAG 57.081 50.000 5.89 0.00 36.95 3.02
706 715 4.974645 ATTATGGAATCCAAGTCGCCTA 57.025 40.909 5.89 0.00 36.95 3.93
707 716 3.864789 ATTATGGAATCCAAGTCGCCT 57.135 42.857 5.89 0.00 36.95 5.52
708 717 5.531287 ACTTTATTATGGAATCCAAGTCGCC 59.469 40.000 5.89 0.00 36.95 5.54
709 718 6.038271 ACACTTTATTATGGAATCCAAGTCGC 59.962 38.462 5.89 0.00 36.95 5.19
710 719 7.409697 CACACTTTATTATGGAATCCAAGTCG 58.590 38.462 5.89 2.38 36.95 4.18
711 720 7.339466 ACCACACTTTATTATGGAATCCAAGTC 59.661 37.037 5.89 0.00 36.95 3.01
712 721 7.122650 CACCACACTTTATTATGGAATCCAAGT 59.877 37.037 5.89 0.49 36.95 3.16
713 722 7.416664 CCACCACACTTTATTATGGAATCCAAG 60.417 40.741 5.89 0.00 36.95 3.61
714 723 6.379703 CCACCACACTTTATTATGGAATCCAA 59.620 38.462 5.89 0.00 36.95 3.53
715 724 5.890985 CCACCACACTTTATTATGGAATCCA 59.109 40.000 3.67 3.67 38.19 3.41
716 725 5.221244 GCCACCACACTTTATTATGGAATCC 60.221 44.000 0.00 0.00 36.04 3.01
717 726 5.505654 CGCCACCACACTTTATTATGGAATC 60.506 44.000 0.00 0.00 36.04 2.52
718 727 4.338118 CGCCACCACACTTTATTATGGAAT 59.662 41.667 0.00 0.00 36.04 3.01
719 728 3.692101 CGCCACCACACTTTATTATGGAA 59.308 43.478 0.00 0.00 36.04 3.53
720 729 3.275143 CGCCACCACACTTTATTATGGA 58.725 45.455 0.00 0.00 36.04 3.41
721 730 2.357637 CCGCCACCACACTTTATTATGG 59.642 50.000 0.00 0.00 38.26 2.74
722 731 3.013921 ACCGCCACCACACTTTATTATG 58.986 45.455 0.00 0.00 0.00 1.90
723 732 3.275999 GACCGCCACCACACTTTATTAT 58.724 45.455 0.00 0.00 0.00 1.28
724 733 2.616001 GGACCGCCACCACACTTTATTA 60.616 50.000 0.00 0.00 0.00 0.98
725 734 1.530323 GACCGCCACCACACTTTATT 58.470 50.000 0.00 0.00 0.00 1.40
726 735 0.322187 GGACCGCCACCACACTTTAT 60.322 55.000 0.00 0.00 0.00 1.40
727 736 1.071814 GGACCGCCACCACACTTTA 59.928 57.895 0.00 0.00 0.00 1.85
728 737 2.203294 GGACCGCCACCACACTTT 60.203 61.111 0.00 0.00 0.00 2.66
729 738 4.619227 CGGACCGCCACCACACTT 62.619 66.667 0.00 0.00 0.00 3.16
748 757 2.159099 CGCTAACCATCACAGCTAAGGA 60.159 50.000 0.00 0.00 33.03 3.36
751 760 4.459390 TTACGCTAACCATCACAGCTAA 57.541 40.909 0.00 0.00 33.03 3.09
753 762 3.328382 TTTACGCTAACCATCACAGCT 57.672 42.857 0.00 0.00 33.03 4.24
754 763 3.621268 TGATTTACGCTAACCATCACAGC 59.379 43.478 0.00 0.00 0.00 4.40
756 765 3.615056 CGTGATTTACGCTAACCATCACA 59.385 43.478 10.36 0.00 46.92 3.58
773 782 1.144057 GGAATCGCCTGTCCGTGAT 59.856 57.895 0.00 0.00 34.46 3.06
775 784 1.811266 CTGGAATCGCCTGTCCGTG 60.811 63.158 0.00 0.00 36.65 4.94
822 831 0.679002 TCGAGAACCTCTACCACGGG 60.679 60.000 0.00 0.00 0.00 5.28
825 834 2.223294 CGACATCGAGAACCTCTACCAC 60.223 54.545 0.00 0.00 43.02 4.16
827 836 2.015587 ACGACATCGAGAACCTCTACC 58.984 52.381 8.54 0.00 43.02 3.18
828 837 2.791849 GCACGACATCGAGAACCTCTAC 60.792 54.545 8.54 0.00 43.02 2.59
829 838 1.400846 GCACGACATCGAGAACCTCTA 59.599 52.381 8.54 0.00 43.02 2.43
830 839 0.171455 GCACGACATCGAGAACCTCT 59.829 55.000 8.54 0.00 43.02 3.69
831 840 0.109272 TGCACGACATCGAGAACCTC 60.109 55.000 8.54 0.00 43.02 3.85
832 841 0.109086 CTGCACGACATCGAGAACCT 60.109 55.000 8.54 0.00 43.02 3.50
833 842 1.687494 GCTGCACGACATCGAGAACC 61.687 60.000 8.54 0.00 43.02 3.62
838 847 2.432456 GGTGCTGCACGACATCGA 60.432 61.111 24.86 0.00 43.02 3.59
841 850 3.640407 AGGGGTGCTGCACGACAT 61.640 61.111 24.86 15.76 34.83 3.06
842 851 4.624364 CAGGGGTGCTGCACGACA 62.624 66.667 24.86 0.00 34.83 4.35
856 865 1.150567 GCTGCTACGATCTGCACAGG 61.151 60.000 0.00 0.00 35.20 4.00
858 867 1.517039 CGCTGCTACGATCTGCACA 60.517 57.895 0.00 0.00 35.20 4.57
862 871 1.519234 TTGGCGCTGCTACGATCTG 60.519 57.895 7.64 0.00 34.06 2.90
863 872 1.519455 GTTGGCGCTGCTACGATCT 60.519 57.895 7.64 0.00 34.06 2.75
869 878 2.668212 GGTGTGTTGGCGCTGCTA 60.668 61.111 7.64 0.00 0.00 3.49
871 880 4.629115 GTGGTGTGTTGGCGCTGC 62.629 66.667 7.64 0.00 0.00 5.25
880 889 1.398692 GATGGTTTGTGGTGGTGTGT 58.601 50.000 0.00 0.00 0.00 3.72
901 911 1.348064 CGGAAGGCCTATGGTGGATA 58.652 55.000 5.16 0.00 0.00 2.59
912 922 2.501610 CCTAGCTCACGGAAGGCC 59.498 66.667 0.00 0.00 0.00 5.19
921 931 2.123854 ACCGCGATCCCTAGCTCA 60.124 61.111 8.23 0.00 0.00 4.26
928 938 2.278401 GTGTACGACCGCGATCCC 60.278 66.667 8.23 0.00 41.64 3.85
992 1009 3.031013 TCGACATCCTCCATCTGCTAAA 58.969 45.455 0.00 0.00 0.00 1.85
993 1010 2.625314 CTCGACATCCTCCATCTGCTAA 59.375 50.000 0.00 0.00 0.00 3.09
994 1011 2.234143 CTCGACATCCTCCATCTGCTA 58.766 52.381 0.00 0.00 0.00 3.49
995 1012 1.039068 CTCGACATCCTCCATCTGCT 58.961 55.000 0.00 0.00 0.00 4.24
996 1013 0.033228 CCTCGACATCCTCCATCTGC 59.967 60.000 0.00 0.00 0.00 4.26
997 1014 0.678395 CCCTCGACATCCTCCATCTG 59.322 60.000 0.00 0.00 0.00 2.90
1120 1139 1.542915 CGAGAACAGTTTCCCTACCGA 59.457 52.381 0.00 0.00 31.28 4.69
1177 1197 2.187946 GCACCAGATCCGTCCCAG 59.812 66.667 0.00 0.00 0.00 4.45
1242 1262 1.206578 CGCTTGCCGAAACGTGAAT 59.793 52.632 0.00 0.00 40.02 2.57
1251 1271 2.125552 CATCCAGACGCTTGCCGA 60.126 61.111 0.00 0.00 41.02 5.54
1290 1310 0.464735 CCTTGTCAAACCACCACGGA 60.465 55.000 0.00 0.00 38.63 4.69
1352 1372 7.440523 AGGGATTACTTGAATTCATATTCGC 57.559 36.000 9.40 12.66 42.55 4.70
1436 1457 7.514784 CAGATCATGGAAATTAGCACCAATA 57.485 36.000 0.00 0.00 37.24 1.90
1457 1478 1.066215 CCGACATCCACATCAACCAGA 60.066 52.381 0.00 0.00 0.00 3.86
1487 1508 1.995376 ACGTTCCCCATCAAGCTTTT 58.005 45.000 0.00 0.00 0.00 2.27
1496 1517 3.279434 GAATTTCTGCTACGTTCCCCAT 58.721 45.455 0.00 0.00 0.00 4.00
1563 1584 3.006752 GCTCATCCTATCCCTCTCTTGTG 59.993 52.174 0.00 0.00 0.00 3.33
1576 1597 6.327365 TCAAAGGTATGAAGATGCTCATCCTA 59.673 38.462 6.27 0.00 38.58 2.94
1724 1747 4.755507 GAGGAGACGTCCCCGGGT 62.756 72.222 21.85 0.00 45.26 5.28
1758 1781 1.273552 CCCTCAACTTCTCCTCTCCCT 60.274 57.143 0.00 0.00 0.00 4.20
1800 1823 2.772191 AGCTCCACCACCACCACA 60.772 61.111 0.00 0.00 0.00 4.17
2020 2054 0.404426 GCAAGTTTCCTAGGGGGTGT 59.596 55.000 9.46 0.00 36.25 4.16
2250 2286 7.562259 TCGGAATATTGGATGAAGGGTATTA 57.438 36.000 0.00 0.00 0.00 0.98
2261 2297 5.545723 AGAGGTGAAGATCGGAATATTGGAT 59.454 40.000 0.00 0.00 0.00 3.41
2270 2306 1.475403 GTCCAGAGGTGAAGATCGGA 58.525 55.000 0.00 0.00 0.00 4.55
2326 2362 0.395312 GAAGGTTGTTCGGAGTCCCA 59.605 55.000 2.80 0.00 0.00 4.37
2386 2422 4.228824 AGGGTCTACACACTTAAGGTTCA 58.771 43.478 7.53 0.00 28.53 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.