Multiple sequence alignment - TraesCS7B01G160300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G160300 chr7B 100.000 2240 0 0 1 2240 218823426 218821187 0.000000e+00 4137.0
1 TraesCS7B01G160300 chr7B 96.875 960 29 1 1 960 73457333 73456375 0.000000e+00 1605.0
2 TraesCS7B01G160300 chr7B 96.598 823 27 1 1012 1833 73430317 73429495 0.000000e+00 1363.0
3 TraesCS7B01G160300 chr7B 95.951 247 10 0 1831 2077 607706961 607707207 3.470000e-108 401.0
4 TraesCS7B01G160300 chr7B 94.483 145 7 1 2068 2211 73429497 73429353 2.900000e-54 222.0
5 TraesCS7B01G160300 chr7B 92.593 54 4 0 952 1005 218822431 218822378 6.630000e-11 78.7
6 TraesCS7B01G160300 chr2D 96.875 960 28 2 1 960 64956970 64956013 0.000000e+00 1605.0
7 TraesCS7B01G160300 chr2D 95.238 840 33 5 996 1833 64954249 64953415 0.000000e+00 1323.0
8 TraesCS7B01G160300 chr2D 94.483 145 7 1 2068 2211 64953417 64953273 2.900000e-54 222.0
9 TraesCS7B01G160300 chr2D 96.000 50 2 0 956 1005 64954244 64954195 5.130000e-12 82.4
10 TraesCS7B01G160300 chr7A 93.050 964 52 8 3 960 119818639 119817685 0.000000e+00 1395.0
11 TraesCS7B01G160300 chr7A 91.909 964 64 7 3 960 428630457 428629502 0.000000e+00 1336.0
12 TraesCS7B01G160300 chr7A 92.033 841 53 9 996 1833 119816011 119815182 0.000000e+00 1170.0
13 TraesCS7B01G160300 chr7A 91.548 840 57 9 996 1833 428627745 428626918 0.000000e+00 1146.0
14 TraesCS7B01G160300 chr7A 98.000 50 1 0 956 1005 119816006 119815957 1.100000e-13 87.9
15 TraesCS7B01G160300 chr7A 96.000 50 2 0 956 1005 428627740 428627691 5.130000e-12 82.4
16 TraesCS7B01G160300 chr2B 92.875 814 46 6 3 811 38393827 38394633 0.000000e+00 1171.0
17 TraesCS7B01G160300 chr2B 91.330 842 44 10 996 1833 637899440 637900256 0.000000e+00 1123.0
18 TraesCS7B01G160300 chr2B 91.082 841 55 11 996 1833 38395100 38395923 0.000000e+00 1120.0
19 TraesCS7B01G160300 chr2B 97.095 241 7 0 1830 2070 704534513 704534753 7.450000e-110 407.0
20 TraesCS7B01G160300 chr2B 92.414 145 10 1 2068 2211 637900254 637900398 2.920000e-49 206.0
21 TraesCS7B01G160300 chr2B 98.000 50 1 0 956 1005 38395105 38395154 1.100000e-13 87.9
22 TraesCS7B01G160300 chr3A 91.320 841 59 9 996 1833 699356293 699355464 0.000000e+00 1136.0
23 TraesCS7B01G160300 chr3A 88.686 274 20 5 3 272 699356613 699356347 7.720000e-85 324.0
24 TraesCS7B01G160300 chr3A 96.000 50 2 0 956 1005 699356288 699356239 5.130000e-12 82.4
25 TraesCS7B01G160300 chr1A 91.201 841 58 10 996 1833 355422932 355423759 0.000000e+00 1129.0
26 TraesCS7B01G160300 chr1A 90.000 840 67 12 996 1832 495734198 495733373 0.000000e+00 1070.0
27 TraesCS7B01G160300 chr1A 84.555 641 90 9 323 960 462342331 462342965 5.250000e-176 627.0
28 TraesCS7B01G160300 chr1A 87.943 282 22 7 3 280 495735298 495735025 2.780000e-84 322.0
29 TraesCS7B01G160300 chr1A 88.321 274 21 5 3 272 355422612 355422878 3.590000e-83 318.0
30 TraesCS7B01G160300 chr1A 95.833 48 2 0 956 1003 495734193 495734146 6.630000e-11 78.7
31 TraesCS7B01G160300 chr1A 94.000 50 3 0 956 1005 355422937 355422986 2.390000e-10 76.8
32 TraesCS7B01G160300 chr6A 91.429 735 41 10 3 733 494013632 494012916 0.000000e+00 989.0
33 TraesCS7B01G160300 chr6A 93.333 45 3 0 956 1000 511526974 511527018 1.440000e-07 67.6
34 TraesCS7B01G160300 chr1D 85.179 641 86 9 323 960 327011917 327012551 0.000000e+00 649.0
35 TraesCS7B01G160300 chr5A 84.399 641 90 10 323 960 354273070 354273703 2.440000e-174 621.0
36 TraesCS7B01G160300 chr1B 83.333 642 97 7 321 960 66933049 66932416 3.210000e-163 584.0
37 TraesCS7B01G160300 chr1B 96.680 241 8 0 1830 2070 229946119 229945879 3.470000e-108 401.0
38 TraesCS7B01G160300 chr3B 98.745 239 3 0 1830 2068 815196229 815195991 2.060000e-115 425.0
39 TraesCS7B01G160300 chrUn 97.500 240 6 0 1831 2070 59805325 59805086 5.760000e-111 411.0
40 TraesCS7B01G160300 chrUn 96.356 247 9 0 1824 2070 119206046 119206292 7.450000e-110 407.0
41 TraesCS7B01G160300 chr6D 97.107 242 7 0 1832 2073 459066281 459066522 2.070000e-110 409.0
42 TraesCS7B01G160300 chr5B 97.095 241 7 0 1830 2070 28603585 28603825 7.450000e-110 407.0
43 TraesCS7B01G160300 chr5B 97.095 241 7 0 1830 2070 271808050 271807810 7.450000e-110 407.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G160300 chr7B 218821187 218823426 2239 True 2107.850000 4137 96.296500 1 2240 2 chr7B.!!$R3 2239
1 TraesCS7B01G160300 chr7B 73456375 73457333 958 True 1605.000000 1605 96.875000 1 960 1 chr7B.!!$R1 959
2 TraesCS7B01G160300 chr7B 73429353 73430317 964 True 792.500000 1363 95.540500 1012 2211 2 chr7B.!!$R2 1199
3 TraesCS7B01G160300 chr2D 64953273 64956970 3697 True 808.100000 1605 95.649000 1 2211 4 chr2D.!!$R1 2210
4 TraesCS7B01G160300 chr7A 119815182 119818639 3457 True 884.300000 1395 94.361000 3 1833 3 chr7A.!!$R1 1830
5 TraesCS7B01G160300 chr7A 428626918 428630457 3539 True 854.800000 1336 93.152333 3 1833 3 chr7A.!!$R2 1830
6 TraesCS7B01G160300 chr2B 38393827 38395923 2096 False 792.966667 1171 93.985667 3 1833 3 chr2B.!!$F2 1830
7 TraesCS7B01G160300 chr2B 637899440 637900398 958 False 664.500000 1123 91.872000 996 2211 2 chr2B.!!$F3 1215
8 TraesCS7B01G160300 chr3A 699355464 699356613 1149 True 514.133333 1136 92.002000 3 1833 3 chr3A.!!$R1 1830
9 TraesCS7B01G160300 chr1A 462342331 462342965 634 False 627.000000 627 84.555000 323 960 1 chr1A.!!$F1 637
10 TraesCS7B01G160300 chr1A 355422612 355423759 1147 False 507.933333 1129 91.174000 3 1833 3 chr1A.!!$F2 1830
11 TraesCS7B01G160300 chr1A 495733373 495735298 1925 True 490.233333 1070 91.258667 3 1832 3 chr1A.!!$R1 1829
12 TraesCS7B01G160300 chr6A 494012916 494013632 716 True 989.000000 989 91.429000 3 733 1 chr6A.!!$R1 730
13 TraesCS7B01G160300 chr1D 327011917 327012551 634 False 649.000000 649 85.179000 323 960 1 chr1D.!!$F1 637
14 TraesCS7B01G160300 chr5A 354273070 354273703 633 False 621.000000 621 84.399000 323 960 1 chr5A.!!$F1 637
15 TraesCS7B01G160300 chr1B 66932416 66933049 633 True 584.000000 584 83.333000 321 960 1 chr1B.!!$R1 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
986 1952 0.587768 TGTGCGTGAGATTGCAAGTG 59.412 50.0 4.94 0.0 43.75 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2053 3801 0.038166 TTGGTACTACCTCCGTCCGT 59.962 55.0 6.79 0.0 39.58 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 6.585695 TGTCTTTTCCTAGTACGACTTGAT 57.414 37.500 0.00 0.00 0.00 2.57
310 318 9.369904 CTACCATTTATTTTCTTCAAACATGGG 57.630 33.333 0.00 0.00 35.66 4.00
373 381 3.075884 AGAAAACGGCGCCAACTAATTA 58.924 40.909 28.98 0.00 0.00 1.40
384 392 4.502259 CGCCAACTAATTATGAGAGGAGCT 60.502 45.833 0.00 0.00 0.00 4.09
464 472 0.863956 ACCCTGGGGAAAATTGTGGA 59.136 50.000 18.88 0.00 38.96 4.02
558 566 4.880120 TGCTCAAATCAGCTAAGAATGAGG 59.120 41.667 15.82 4.99 40.39 3.86
666 674 5.720041 AGTAGCCATGTTTCTTCTAGTGGTA 59.280 40.000 0.00 0.00 0.00 3.25
755 763 5.163591 GGTATTTTAAGGCGGTGCTTTATGT 60.164 40.000 0.00 0.00 30.66 2.29
760 768 2.785562 AGGCGGTGCTTTATGTTGTTA 58.214 42.857 0.00 0.00 0.00 2.41
950 958 4.082081 GGATTGTGTTGGAGCAATTGATGA 60.082 41.667 10.34 0.00 35.69 2.92
960 968 5.244402 TGGAGCAATTGATGAAACTCATGTT 59.756 36.000 10.34 0.00 37.20 2.71
962 1928 6.090358 GGAGCAATTGATGAAACTCATGTTTG 59.910 38.462 10.34 0.00 45.36 2.93
966 1932 7.117236 GCAATTGATGAAACTCATGTTTGATGT 59.883 33.333 10.34 0.00 45.36 3.06
972 1938 3.272439 ACTCATGTTTGATGTTGTGCG 57.728 42.857 0.00 0.00 0.00 5.34
973 1939 2.618241 ACTCATGTTTGATGTTGTGCGT 59.382 40.909 0.00 0.00 0.00 5.24
980 1946 3.541071 TTGATGTTGTGCGTGAGATTG 57.459 42.857 0.00 0.00 0.00 2.67
982 1948 1.197492 GATGTTGTGCGTGAGATTGCA 59.803 47.619 0.00 0.00 39.13 4.08
983 1949 1.020437 TGTTGTGCGTGAGATTGCAA 58.980 45.000 0.00 0.00 43.75 4.08
984 1950 1.002576 TGTTGTGCGTGAGATTGCAAG 60.003 47.619 4.94 0.00 43.75 4.01
986 1952 0.587768 TGTGCGTGAGATTGCAAGTG 59.412 50.000 4.94 0.00 43.75 3.16
987 1953 0.727122 GTGCGTGAGATTGCAAGTGC 60.727 55.000 4.94 3.01 43.75 4.40
989 1955 1.078709 GCGTGAGATTGCAAGTGCTA 58.921 50.000 4.94 0.00 42.66 3.49
990 1956 1.667724 GCGTGAGATTGCAAGTGCTAT 59.332 47.619 4.94 2.13 42.66 2.97
1015 2756 2.556144 ACACATGTCTGATGCTGTGT 57.444 45.000 13.59 13.59 45.38 3.72
1142 2883 6.115446 TGGCTGTTTTAGATTATCTGACTGG 58.885 40.000 4.78 1.38 0.00 4.00
1177 2918 4.843728 AGGCCTTAATTTCGTGAAGATGA 58.156 39.130 0.00 0.00 0.00 2.92
1185 2926 6.674694 AATTTCGTGAAGATGAATGAGGAG 57.325 37.500 0.00 0.00 0.00 3.69
1265 3006 4.586421 TGATGTTAGTTGGTGCATTTTGGA 59.414 37.500 0.00 0.00 0.00 3.53
1451 3193 8.184192 AGTGTTTTTGTATCTGTCTCACAAAAG 58.816 33.333 10.59 0.00 46.75 2.27
1707 3454 1.221466 CGAATGATGTATGCCGCCGT 61.221 55.000 0.00 0.00 0.00 5.68
1791 3538 3.837146 CCATCTCAGATACAGCCTACCAT 59.163 47.826 0.00 0.00 0.00 3.55
1797 3544 6.554982 TCTCAGATACAGCCTACCATACAAAT 59.445 38.462 0.00 0.00 0.00 2.32
1811 3559 1.251251 ACAAATTCTGAGCCCAGCAC 58.749 50.000 0.00 0.00 40.20 4.40
1833 3581 2.623889 GTCCCGACAGATACATGCTACT 59.376 50.000 0.00 0.00 0.00 2.57
1834 3582 3.819337 GTCCCGACAGATACATGCTACTA 59.181 47.826 0.00 0.00 0.00 1.82
1835 3583 3.819337 TCCCGACAGATACATGCTACTAC 59.181 47.826 0.00 0.00 0.00 2.73
1836 3584 3.057456 CCCGACAGATACATGCTACTACC 60.057 52.174 0.00 0.00 0.00 3.18
1837 3585 3.821600 CCGACAGATACATGCTACTACCT 59.178 47.826 0.00 0.00 0.00 3.08
1838 3586 4.083217 CCGACAGATACATGCTACTACCTC 60.083 50.000 0.00 0.00 0.00 3.85
1839 3587 4.083217 CGACAGATACATGCTACTACCTCC 60.083 50.000 0.00 0.00 0.00 4.30
1840 3588 3.821600 ACAGATACATGCTACTACCTCCG 59.178 47.826 0.00 0.00 0.00 4.63
1841 3589 3.821600 CAGATACATGCTACTACCTCCGT 59.178 47.826 0.00 0.00 0.00 4.69
1842 3590 4.073549 AGATACATGCTACTACCTCCGTC 58.926 47.826 0.00 0.00 0.00 4.79
1843 3591 1.400737 ACATGCTACTACCTCCGTCC 58.599 55.000 0.00 0.00 0.00 4.79
1844 3592 1.063867 ACATGCTACTACCTCCGTCCT 60.064 52.381 0.00 0.00 0.00 3.85
1845 3593 1.338337 CATGCTACTACCTCCGTCCTG 59.662 57.143 0.00 0.00 0.00 3.86
1846 3594 0.395311 TGCTACTACCTCCGTCCTGG 60.395 60.000 0.00 0.00 40.09 4.45
1847 3595 0.395448 GCTACTACCTCCGTCCTGGT 60.395 60.000 0.00 0.00 39.52 4.00
1848 3596 1.959028 GCTACTACCTCCGTCCTGGTT 60.959 57.143 0.00 0.00 39.52 3.67
1849 3597 2.454538 CTACTACCTCCGTCCTGGTTT 58.545 52.381 0.00 0.00 39.52 3.27
1850 3598 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
1851 3599 3.111741 ACTACCTCCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 39.52 1.40
1852 3600 4.255510 ACTACCTCCGTCCTGGTTTATA 57.744 45.455 0.00 0.00 39.52 0.98
1853 3601 4.213513 ACTACCTCCGTCCTGGTTTATAG 58.786 47.826 0.00 0.00 39.52 1.31
1854 3602 2.395619 ACCTCCGTCCTGGTTTATAGG 58.604 52.381 0.00 0.00 39.52 2.57
1855 3603 2.292719 ACCTCCGTCCTGGTTTATAGGT 60.293 50.000 0.00 0.00 35.62 3.08
1856 3604 2.364647 CCTCCGTCCTGGTTTATAGGTC 59.635 54.545 0.00 0.00 39.52 3.85
1857 3605 2.364647 CTCCGTCCTGGTTTATAGGTCC 59.635 54.545 0.00 0.00 39.52 4.46
1858 3606 1.415289 CCGTCCTGGTTTATAGGTCCC 59.585 57.143 0.00 0.00 36.67 4.46
1859 3607 1.415289 CGTCCTGGTTTATAGGTCCCC 59.585 57.143 0.00 0.00 36.67 4.81
1860 3608 2.772930 GTCCTGGTTTATAGGTCCCCT 58.227 52.381 0.00 0.00 36.67 4.79
1861 3609 3.120898 GTCCTGGTTTATAGGTCCCCTT 58.879 50.000 0.00 0.00 36.67 3.95
1862 3610 3.526430 GTCCTGGTTTATAGGTCCCCTTT 59.474 47.826 0.00 0.00 36.67 3.11
1863 3611 3.526019 TCCTGGTTTATAGGTCCCCTTTG 59.474 47.826 0.00 0.00 36.67 2.77
1864 3612 3.268595 CCTGGTTTATAGGTCCCCTTTGT 59.731 47.826 0.00 0.00 34.61 2.83
1865 3613 4.475747 CCTGGTTTATAGGTCCCCTTTGTA 59.524 45.833 0.00 0.00 34.61 2.41
1866 3614 5.397559 CCTGGTTTATAGGTCCCCTTTGTAG 60.398 48.000 0.00 0.00 34.61 2.74
1867 3615 5.102967 TGGTTTATAGGTCCCCTTTGTAGT 58.897 41.667 0.00 0.00 34.61 2.73
1868 3616 5.552766 TGGTTTATAGGTCCCCTTTGTAGTT 59.447 40.000 0.00 0.00 34.61 2.24
1869 3617 6.045813 TGGTTTATAGGTCCCCTTTGTAGTTT 59.954 38.462 0.00 0.00 34.61 2.66
1870 3618 6.376299 GGTTTATAGGTCCCCTTTGTAGTTTG 59.624 42.308 0.00 0.00 34.61 2.93
1871 3619 6.707273 TTATAGGTCCCCTTTGTAGTTTGT 57.293 37.500 0.00 0.00 34.61 2.83
1872 3620 3.223674 AGGTCCCCTTTGTAGTTTGTG 57.776 47.619 0.00 0.00 0.00 3.33
1873 3621 2.512476 AGGTCCCCTTTGTAGTTTGTGT 59.488 45.455 0.00 0.00 0.00 3.72
1874 3622 2.882761 GGTCCCCTTTGTAGTTTGTGTC 59.117 50.000 0.00 0.00 0.00 3.67
1875 3623 3.547746 GTCCCCTTTGTAGTTTGTGTCA 58.452 45.455 0.00 0.00 0.00 3.58
1876 3624 3.949113 GTCCCCTTTGTAGTTTGTGTCAA 59.051 43.478 0.00 0.00 0.00 3.18
1877 3625 4.399934 GTCCCCTTTGTAGTTTGTGTCAAA 59.600 41.667 0.00 0.00 0.00 2.69
1878 3626 5.068591 GTCCCCTTTGTAGTTTGTGTCAAAT 59.931 40.000 0.00 0.00 31.08 2.32
1879 3627 5.659079 TCCCCTTTGTAGTTTGTGTCAAATT 59.341 36.000 0.00 0.00 31.08 1.82
1880 3628 6.155393 TCCCCTTTGTAGTTTGTGTCAAATTT 59.845 34.615 0.00 0.00 31.08 1.82
1881 3629 6.821160 CCCCTTTGTAGTTTGTGTCAAATTTT 59.179 34.615 0.00 0.00 31.08 1.82
1882 3630 7.201600 CCCCTTTGTAGTTTGTGTCAAATTTTG 60.202 37.037 2.59 2.59 31.08 2.44
1883 3631 7.547370 CCCTTTGTAGTTTGTGTCAAATTTTGA 59.453 33.333 7.74 7.74 37.33 2.69
1920 3668 9.539825 AACTAACAAAATGTTAATGCATGTCAA 57.460 25.926 0.00 0.00 41.70 3.18
1921 3669 9.195411 ACTAACAAAATGTTAATGCATGTCAAG 57.805 29.630 0.00 0.00 41.70 3.02
1922 3670 9.409312 CTAACAAAATGTTAATGCATGTCAAGA 57.591 29.630 0.00 0.00 41.70 3.02
1923 3671 8.659925 AACAAAATGTTAATGCATGTCAAGAA 57.340 26.923 0.00 0.00 39.09 2.52
1924 3672 8.659925 ACAAAATGTTAATGCATGTCAAGAAA 57.340 26.923 0.00 0.00 0.00 2.52
1925 3673 9.107177 ACAAAATGTTAATGCATGTCAAGAAAA 57.893 25.926 0.00 0.00 0.00 2.29
1926 3674 9.932699 CAAAATGTTAATGCATGTCAAGAAAAA 57.067 25.926 0.00 0.00 0.00 1.94
1937 3685 9.361315 TGCATGTCAAGAAAAATTATCTCATTG 57.639 29.630 0.00 0.00 0.00 2.82
1938 3686 8.814235 GCATGTCAAGAAAAATTATCTCATTGG 58.186 33.333 0.00 0.00 0.00 3.16
1944 3692 9.793252 CAAGAAAAATTATCTCATTGGATTCGT 57.207 29.630 0.00 0.00 0.00 3.85
1953 3701 6.344572 TCTCATTGGATTCGTATTTGAACG 57.655 37.500 0.00 0.00 44.19 3.95
1954 3702 5.872617 TCTCATTGGATTCGTATTTGAACGT 59.127 36.000 0.00 0.00 43.31 3.99
1955 3703 7.036829 TCTCATTGGATTCGTATTTGAACGTA 58.963 34.615 0.00 0.00 43.31 3.57
1956 3704 7.222031 TCTCATTGGATTCGTATTTGAACGTAG 59.778 37.037 0.00 0.00 43.31 3.51
1988 3736 7.627585 AAATATAATGTTTGATGACATGCGC 57.372 32.000 0.00 0.00 40.03 6.09
1989 3737 1.898938 AATGTTTGATGACATGCGCG 58.101 45.000 0.00 0.00 40.03 6.86
1990 3738 1.085893 ATGTTTGATGACATGCGCGA 58.914 45.000 12.10 0.00 38.75 5.87
1991 3739 0.871057 TGTTTGATGACATGCGCGAA 59.129 45.000 12.10 0.00 0.00 4.70
1992 3740 1.250476 GTTTGATGACATGCGCGAAC 58.750 50.000 12.10 0.00 0.00 3.95
1993 3741 0.871057 TTTGATGACATGCGCGAACA 59.129 45.000 12.10 0.00 0.00 3.18
1994 3742 1.085893 TTGATGACATGCGCGAACAT 58.914 45.000 12.10 0.63 0.00 2.71
1995 3743 1.085893 TGATGACATGCGCGAACATT 58.914 45.000 12.10 0.00 0.00 2.71
1996 3744 1.468127 TGATGACATGCGCGAACATTT 59.532 42.857 12.10 0.00 0.00 2.32
1997 3745 2.095314 TGATGACATGCGCGAACATTTT 60.095 40.909 12.10 0.00 0.00 1.82
1998 3746 1.684142 TGACATGCGCGAACATTTTG 58.316 45.000 12.10 0.00 0.00 2.44
1999 3747 1.001924 TGACATGCGCGAACATTTTGT 60.002 42.857 12.10 0.00 0.00 2.83
2000 3748 2.050691 GACATGCGCGAACATTTTGTT 58.949 42.857 12.10 0.00 44.37 2.83
2001 3749 3.230355 GACATGCGCGAACATTTTGTTA 58.770 40.909 12.10 0.00 41.28 2.41
2002 3750 3.233578 ACATGCGCGAACATTTTGTTAG 58.766 40.909 12.10 0.00 41.28 2.34
2003 3751 3.233578 CATGCGCGAACATTTTGTTAGT 58.766 40.909 12.10 0.00 41.28 2.24
2004 3752 3.341857 TGCGCGAACATTTTGTTAGTT 57.658 38.095 12.10 0.00 41.28 2.24
2005 3753 3.696898 TGCGCGAACATTTTGTTAGTTT 58.303 36.364 12.10 0.00 41.28 2.66
2006 3754 4.845387 TGCGCGAACATTTTGTTAGTTTA 58.155 34.783 12.10 0.00 41.28 2.01
2007 3755 5.271625 TGCGCGAACATTTTGTTAGTTTAA 58.728 33.333 12.10 0.00 41.28 1.52
2008 3756 5.915758 TGCGCGAACATTTTGTTAGTTTAAT 59.084 32.000 12.10 0.00 41.28 1.40
2009 3757 6.087028 TGCGCGAACATTTTGTTAGTTTAATC 59.913 34.615 12.10 0.00 41.28 1.75
2010 3758 6.304683 GCGCGAACATTTTGTTAGTTTAATCT 59.695 34.615 12.10 0.00 41.28 2.40
2011 3759 7.479291 GCGCGAACATTTTGTTAGTTTAATCTA 59.521 33.333 12.10 0.00 41.28 1.98
2012 3760 9.485591 CGCGAACATTTTGTTAGTTTAATCTAT 57.514 29.630 0.00 0.00 41.28 1.98
2027 3775 8.592809 AGTTTAATCTATGGTCAAAATTTGGCA 58.407 29.630 12.62 0.00 36.88 4.92
2028 3776 8.655970 GTTTAATCTATGGTCAAAATTTGGCAC 58.344 33.333 12.62 1.03 36.88 5.01
2029 3777 4.433186 TCTATGGTCAAAATTTGGCACG 57.567 40.909 12.62 0.00 36.88 5.34
2030 3778 4.075682 TCTATGGTCAAAATTTGGCACGA 58.924 39.130 12.62 0.00 36.88 4.35
2031 3779 3.742433 ATGGTCAAAATTTGGCACGAA 57.258 38.095 12.62 0.00 36.88 3.85
2032 3780 3.526931 TGGTCAAAATTTGGCACGAAA 57.473 38.095 12.62 0.00 36.88 3.46
2033 3781 4.065321 TGGTCAAAATTTGGCACGAAAT 57.935 36.364 12.62 0.00 36.88 2.17
2034 3782 5.201713 TGGTCAAAATTTGGCACGAAATA 57.798 34.783 12.62 0.00 36.88 1.40
2035 3783 4.985409 TGGTCAAAATTTGGCACGAAATAC 59.015 37.500 12.62 0.00 36.88 1.89
2036 3784 4.985409 GGTCAAAATTTGGCACGAAATACA 59.015 37.500 12.62 0.00 36.88 2.29
2037 3785 5.463724 GGTCAAAATTTGGCACGAAATACAA 59.536 36.000 12.62 0.00 36.88 2.41
2038 3786 6.147000 GGTCAAAATTTGGCACGAAATACAAT 59.853 34.615 12.62 0.00 36.88 2.71
2039 3787 7.008859 GTCAAAATTTGGCACGAAATACAATG 58.991 34.615 5.33 0.00 34.79 2.82
2040 3788 6.146837 TCAAAATTTGGCACGAAATACAATGG 59.853 34.615 5.83 0.00 0.00 3.16
2041 3789 3.584406 TTTGGCACGAAATACAATGGG 57.416 42.857 0.00 0.00 0.00 4.00
2042 3790 1.468985 TGGCACGAAATACAATGGGG 58.531 50.000 0.00 0.00 0.00 4.96
2043 3791 1.004862 TGGCACGAAATACAATGGGGA 59.995 47.619 0.00 0.00 0.00 4.81
2044 3792 1.404035 GGCACGAAATACAATGGGGAC 59.596 52.381 0.00 0.00 0.00 4.46
2059 3807 1.081094 GGGACCAATAAACACGGACG 58.919 55.000 0.00 0.00 0.00 4.79
2060 3808 1.081094 GGACCAATAAACACGGACGG 58.919 55.000 0.00 0.00 0.00 4.79
2061 3809 1.338011 GGACCAATAAACACGGACGGA 60.338 52.381 0.00 0.00 0.00 4.69
2062 3810 1.997606 GACCAATAAACACGGACGGAG 59.002 52.381 0.00 0.00 0.00 4.63
2063 3811 1.338389 ACCAATAAACACGGACGGAGG 60.338 52.381 0.00 0.00 0.00 4.30
2064 3812 1.338389 CCAATAAACACGGACGGAGGT 60.338 52.381 0.00 0.00 0.00 3.85
2065 3813 2.094078 CCAATAAACACGGACGGAGGTA 60.094 50.000 0.00 0.00 0.00 3.08
2066 3814 3.184541 CAATAAACACGGACGGAGGTAG 58.815 50.000 0.00 0.00 0.00 3.18
2067 3815 1.909700 TAAACACGGACGGAGGTAGT 58.090 50.000 0.00 0.00 0.00 2.73
2068 3816 1.909700 AAACACGGACGGAGGTAGTA 58.090 50.000 0.00 0.00 0.00 1.82
2069 3817 1.168714 AACACGGACGGAGGTAGTAC 58.831 55.000 0.00 0.00 0.00 2.73
2081 3829 3.195182 GGAGGTAGTACCAAACAGAGTCC 59.805 52.174 21.49 12.36 41.95 3.85
2129 3877 4.014569 TGCTACCAAACAACTGCAGATA 57.985 40.909 23.35 0.00 0.00 1.98
2164 3912 3.845178 TGTCTGTACTTAACATGGCTCG 58.155 45.455 0.00 0.00 37.50 5.03
2169 3917 0.912487 ACTTAACATGGCTCGGGGGA 60.912 55.000 0.00 0.00 0.00 4.81
2190 3939 0.250234 ACACCGTGACAGGATGATGG 59.750 55.000 5.28 0.00 39.69 3.51
2211 3960 3.136626 GGAGGCTACCAAACACATCCTAT 59.863 47.826 0.00 0.00 0.00 2.57
2212 3961 4.385310 GGAGGCTACCAAACACATCCTATT 60.385 45.833 0.00 0.00 0.00 1.73
2213 3962 4.526970 AGGCTACCAAACACATCCTATTG 58.473 43.478 0.00 0.00 0.00 1.90
2214 3963 4.018415 AGGCTACCAAACACATCCTATTGT 60.018 41.667 0.00 0.00 0.00 2.71
2215 3964 5.190925 AGGCTACCAAACACATCCTATTGTA 59.809 40.000 0.00 0.00 0.00 2.41
2216 3965 5.296035 GGCTACCAAACACATCCTATTGTAC 59.704 44.000 0.00 0.00 0.00 2.90
2217 3966 5.296035 GCTACCAAACACATCCTATTGTACC 59.704 44.000 0.00 0.00 0.00 3.34
2218 3967 4.258543 ACCAAACACATCCTATTGTACCG 58.741 43.478 0.00 0.00 0.00 4.02
2219 3968 3.064820 CCAAACACATCCTATTGTACCGC 59.935 47.826 0.00 0.00 0.00 5.68
2220 3969 2.614829 ACACATCCTATTGTACCGCC 57.385 50.000 0.00 0.00 0.00 6.13
2221 3970 1.140252 ACACATCCTATTGTACCGCCC 59.860 52.381 0.00 0.00 0.00 6.13
2222 3971 1.140052 CACATCCTATTGTACCGCCCA 59.860 52.381 0.00 0.00 0.00 5.36
2223 3972 1.841277 ACATCCTATTGTACCGCCCAA 59.159 47.619 0.00 0.00 0.00 4.12
2224 3973 2.240160 ACATCCTATTGTACCGCCCAAA 59.760 45.455 0.00 0.00 0.00 3.28
2225 3974 3.283751 CATCCTATTGTACCGCCCAAAA 58.716 45.455 0.00 0.00 0.00 2.44
2226 3975 2.713877 TCCTATTGTACCGCCCAAAAC 58.286 47.619 0.00 0.00 0.00 2.43
2227 3976 1.399089 CCTATTGTACCGCCCAAAACG 59.601 52.381 0.00 0.00 0.00 3.60
2235 3984 2.356194 GCCCAAAACGGCTGCTTG 60.356 61.111 0.00 0.00 46.10 4.01
2236 3985 2.356194 CCCAAAACGGCTGCTTGC 60.356 61.111 0.00 0.00 41.94 4.01
2237 3986 2.730604 CCAAAACGGCTGCTTGCG 60.731 61.111 0.00 0.00 44.05 4.85
2238 3987 2.026014 CAAAACGGCTGCTTGCGT 59.974 55.556 0.00 0.00 44.05 5.24
2239 3988 2.026014 AAAACGGCTGCTTGCGTG 59.974 55.556 0.00 0.00 44.05 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 180 5.624967 GCAAATCACCACAATGATGAATGGA 60.625 40.000 0.00 0.00 39.32 3.41
373 381 6.296026 CAACTACTAGACTAGCTCCTCTCAT 58.704 44.000 9.52 0.00 0.00 2.90
666 674 2.316108 CTAAACCTTTGGTTGTGCCCT 58.684 47.619 2.49 0.00 46.20 5.19
755 763 4.459337 TCTCATCTCGCAACTCTCTAACAA 59.541 41.667 0.00 0.00 0.00 2.83
760 768 3.286353 TCATCTCATCTCGCAACTCTCT 58.714 45.455 0.00 0.00 0.00 3.10
960 968 2.350676 GCAATCTCACGCACAACATCAA 60.351 45.455 0.00 0.00 0.00 2.57
962 1928 1.197492 TGCAATCTCACGCACAACATC 59.803 47.619 0.00 0.00 31.95 3.06
966 1932 1.002576 CACTTGCAATCTCACGCACAA 60.003 47.619 0.00 0.00 38.00 3.33
972 1938 4.154737 TGTTGATAGCACTTGCAATCTCAC 59.845 41.667 0.00 0.00 45.16 3.51
973 1939 4.325972 TGTTGATAGCACTTGCAATCTCA 58.674 39.130 0.00 0.00 45.16 3.27
980 1946 3.624326 TGTGTTGTTGATAGCACTTGC 57.376 42.857 0.00 0.00 42.49 4.01
982 1948 5.049198 CAGACATGTGTTGTTGATAGCACTT 60.049 40.000 1.15 0.00 39.18 3.16
983 1949 4.453478 CAGACATGTGTTGTTGATAGCACT 59.547 41.667 1.15 0.00 39.18 4.40
984 1950 4.452114 TCAGACATGTGTTGTTGATAGCAC 59.548 41.667 1.15 0.00 39.18 4.40
986 1952 5.566623 CATCAGACATGTGTTGTTGATAGC 58.433 41.667 1.15 0.00 39.18 2.97
987 1953 5.353400 AGCATCAGACATGTGTTGTTGATAG 59.647 40.000 1.15 2.24 39.18 2.08
989 1955 4.077108 AGCATCAGACATGTGTTGTTGAT 58.923 39.130 1.15 3.09 39.18 2.57
990 1956 3.251487 CAGCATCAGACATGTGTTGTTGA 59.749 43.478 1.15 0.00 39.18 3.18
991 1957 3.004002 ACAGCATCAGACATGTGTTGTTG 59.996 43.478 1.15 6.53 39.18 3.33
992 1958 3.004002 CACAGCATCAGACATGTGTTGTT 59.996 43.478 1.15 0.00 39.18 2.83
993 1959 2.551032 CACAGCATCAGACATGTGTTGT 59.449 45.455 1.15 0.00 42.79 3.32
994 1960 3.197434 CACAGCATCAGACATGTGTTG 57.803 47.619 1.15 1.30 38.54 3.33
997 1963 2.095919 CACACACAGCATCAGACATGTG 60.096 50.000 1.15 9.07 46.59 3.21
1015 2756 3.941573 TGATAGCACTTGCAATCTCACA 58.058 40.909 0.00 0.02 45.16 3.58
1142 2883 6.791867 AATTAAGGCCTTTTCCCTTATGTC 57.208 37.500 26.08 0.00 42.73 3.06
1177 2918 0.322546 GGTTTGCGGACCTCCTCATT 60.323 55.000 1.29 0.00 36.73 2.57
1185 2926 1.231958 TGAACGATGGTTTGCGGACC 61.232 55.000 0.00 1.53 36.24 4.46
1707 3454 5.126222 TGTGTGCACAATTCAAAGGAGTTTA 59.874 36.000 23.59 0.00 38.56 2.01
1759 3506 6.015519 GCTGTATCTGAGATGGTGAAGATACT 60.016 42.308 17.76 0.00 46.10 2.12
1765 3512 3.378512 AGGCTGTATCTGAGATGGTGAA 58.621 45.455 4.96 0.00 0.00 3.18
1791 3538 2.436417 GTGCTGGGCTCAGAATTTGTA 58.564 47.619 20.53 0.00 43.49 2.41
1797 3544 2.343758 GACGTGCTGGGCTCAGAA 59.656 61.111 20.53 2.69 43.49 3.02
1833 3581 3.052642 ACCTATAAACCAGGACGGAGGTA 60.053 47.826 0.00 0.00 35.66 3.08
1834 3582 2.292719 ACCTATAAACCAGGACGGAGGT 60.293 50.000 0.00 0.00 40.61 3.85
1835 3583 2.364647 GACCTATAAACCAGGACGGAGG 59.635 54.545 0.00 0.00 38.63 4.30
1836 3584 2.364647 GGACCTATAAACCAGGACGGAG 59.635 54.545 0.00 0.00 38.63 4.63
1837 3585 2.391678 GGACCTATAAACCAGGACGGA 58.608 52.381 0.00 0.00 38.63 4.69
1838 3586 1.415289 GGGACCTATAAACCAGGACGG 59.585 57.143 0.00 0.00 42.50 4.79
1839 3587 2.904697 GGGACCTATAAACCAGGACG 57.095 55.000 0.00 0.00 36.61 4.79
1854 3602 3.547746 TGACACAAACTACAAAGGGGAC 58.452 45.455 0.00 0.00 0.00 4.46
1855 3603 3.935818 TGACACAAACTACAAAGGGGA 57.064 42.857 0.00 0.00 0.00 4.81
1856 3604 4.993029 TTTGACACAAACTACAAAGGGG 57.007 40.909 0.00 0.00 0.00 4.79
1857 3605 7.547370 TCAAAATTTGACACAAACTACAAAGGG 59.453 33.333 4.03 0.00 36.07 3.95
1858 3606 8.472683 TCAAAATTTGACACAAACTACAAAGG 57.527 30.769 4.03 0.00 36.07 3.11
1894 3642 9.539825 TTGACATGCATTAACATTTTGTTAGTT 57.460 25.926 0.00 0.00 42.93 2.24
1895 3643 9.195411 CTTGACATGCATTAACATTTTGTTAGT 57.805 29.630 0.00 0.00 42.93 2.24
1896 3644 9.409312 TCTTGACATGCATTAACATTTTGTTAG 57.591 29.630 0.00 0.00 42.93 2.34
1897 3645 9.755804 TTCTTGACATGCATTAACATTTTGTTA 57.244 25.926 0.00 0.00 41.45 2.41
1898 3646 8.659925 TTCTTGACATGCATTAACATTTTGTT 57.340 26.923 0.00 0.00 43.88 2.83
1899 3647 8.659925 TTTCTTGACATGCATTAACATTTTGT 57.340 26.923 0.00 0.00 0.00 2.83
1900 3648 9.932699 TTTTTCTTGACATGCATTAACATTTTG 57.067 25.926 0.00 0.00 0.00 2.44
1911 3659 9.361315 CAATGAGATAATTTTTCTTGACATGCA 57.639 29.630 0.00 0.00 0.00 3.96
1912 3660 8.814235 CCAATGAGATAATTTTTCTTGACATGC 58.186 33.333 0.00 0.00 0.00 4.06
1918 3666 9.793252 ACGAATCCAATGAGATAATTTTTCTTG 57.207 29.630 0.00 0.00 0.00 3.02
1927 3675 8.547894 CGTTCAAATACGAATCCAATGAGATAA 58.452 33.333 0.00 0.00 43.99 1.75
1928 3676 7.709182 ACGTTCAAATACGAATCCAATGAGATA 59.291 33.333 2.93 0.00 43.99 1.98
1929 3677 6.538742 ACGTTCAAATACGAATCCAATGAGAT 59.461 34.615 2.93 0.00 43.99 2.75
1930 3678 5.872617 ACGTTCAAATACGAATCCAATGAGA 59.127 36.000 2.93 0.00 43.99 3.27
1931 3679 6.106877 ACGTTCAAATACGAATCCAATGAG 57.893 37.500 2.93 0.00 43.99 2.90
1932 3680 6.814644 ACTACGTTCAAATACGAATCCAATGA 59.185 34.615 0.00 0.00 43.99 2.57
1933 3681 7.000575 ACTACGTTCAAATACGAATCCAATG 57.999 36.000 0.00 0.00 43.99 2.82
1934 3682 7.605410 AACTACGTTCAAATACGAATCCAAT 57.395 32.000 0.00 0.00 43.99 3.16
1935 3683 7.424227 AAACTACGTTCAAATACGAATCCAA 57.576 32.000 0.00 0.00 43.99 3.53
1936 3684 7.424227 AAAACTACGTTCAAATACGAATCCA 57.576 32.000 0.00 0.00 43.99 3.41
1937 3685 9.810231 TTAAAAACTACGTTCAAATACGAATCC 57.190 29.630 0.00 0.00 43.99 3.01
1962 3710 8.542132 GCGCATGTCATCAAACATTATATTTTT 58.458 29.630 0.30 0.00 37.78 1.94
1963 3711 7.096518 CGCGCATGTCATCAAACATTATATTTT 60.097 33.333 8.75 0.00 37.78 1.82
1964 3712 6.360414 CGCGCATGTCATCAAACATTATATTT 59.640 34.615 8.75 0.00 37.78 1.40
1965 3713 5.852755 CGCGCATGTCATCAAACATTATATT 59.147 36.000 8.75 0.00 37.78 1.28
1966 3714 5.179182 TCGCGCATGTCATCAAACATTATAT 59.821 36.000 8.75 0.00 37.78 0.86
1967 3715 4.509600 TCGCGCATGTCATCAAACATTATA 59.490 37.500 8.75 0.00 37.78 0.98
1968 3716 3.312146 TCGCGCATGTCATCAAACATTAT 59.688 39.130 8.75 0.00 37.78 1.28
1969 3717 2.675348 TCGCGCATGTCATCAAACATTA 59.325 40.909 8.75 0.00 37.78 1.90
1970 3718 1.468127 TCGCGCATGTCATCAAACATT 59.532 42.857 8.75 0.00 37.78 2.71
1971 3719 1.085893 TCGCGCATGTCATCAAACAT 58.914 45.000 8.75 0.00 40.49 2.71
1972 3720 0.871057 TTCGCGCATGTCATCAAACA 59.129 45.000 8.75 0.00 0.00 2.83
1973 3721 1.250476 GTTCGCGCATGTCATCAAAC 58.750 50.000 8.75 0.00 0.00 2.93
1974 3722 0.871057 TGTTCGCGCATGTCATCAAA 59.129 45.000 8.75 0.00 0.00 2.69
1975 3723 1.085893 ATGTTCGCGCATGTCATCAA 58.914 45.000 8.75 0.00 0.00 2.57
1976 3724 1.085893 AATGTTCGCGCATGTCATCA 58.914 45.000 8.75 0.00 0.00 3.07
1977 3725 2.178474 AAATGTTCGCGCATGTCATC 57.822 45.000 8.75 0.00 0.00 2.92
1978 3726 2.252747 CAAAATGTTCGCGCATGTCAT 58.747 42.857 8.75 3.28 0.00 3.06
1979 3727 1.001924 ACAAAATGTTCGCGCATGTCA 60.002 42.857 8.75 0.60 0.00 3.58
1980 3728 1.685302 ACAAAATGTTCGCGCATGTC 58.315 45.000 8.75 0.00 0.00 3.06
1981 3729 2.132740 AACAAAATGTTCGCGCATGT 57.867 40.000 8.75 0.00 35.27 3.21
1982 3730 3.233578 ACTAACAAAATGTTCGCGCATG 58.766 40.909 8.75 0.00 40.22 4.06
1983 3731 3.552604 ACTAACAAAATGTTCGCGCAT 57.447 38.095 8.75 0.00 40.22 4.73
1984 3732 3.341857 AACTAACAAAATGTTCGCGCA 57.658 38.095 8.75 0.00 40.22 6.09
1985 3733 5.793023 TTAAACTAACAAAATGTTCGCGC 57.207 34.783 0.00 0.00 40.22 6.86
1986 3734 7.775729 AGATTAAACTAACAAAATGTTCGCG 57.224 32.000 0.00 0.00 40.22 5.87
2001 3749 8.592809 TGCCAAATTTTGACCATAGATTAAACT 58.407 29.630 10.72 0.00 0.00 2.66
2002 3750 8.655970 GTGCCAAATTTTGACCATAGATTAAAC 58.344 33.333 10.72 0.00 0.00 2.01
2003 3751 7.543868 CGTGCCAAATTTTGACCATAGATTAAA 59.456 33.333 10.72 0.00 0.00 1.52
2004 3752 7.032580 CGTGCCAAATTTTGACCATAGATTAA 58.967 34.615 10.72 0.00 0.00 1.40
2005 3753 6.375736 TCGTGCCAAATTTTGACCATAGATTA 59.624 34.615 10.72 0.00 0.00 1.75
2006 3754 5.184864 TCGTGCCAAATTTTGACCATAGATT 59.815 36.000 10.72 0.00 0.00 2.40
2007 3755 4.704540 TCGTGCCAAATTTTGACCATAGAT 59.295 37.500 10.72 0.00 0.00 1.98
2008 3756 4.075682 TCGTGCCAAATTTTGACCATAGA 58.924 39.130 10.72 8.13 0.00 1.98
2009 3757 4.433186 TCGTGCCAAATTTTGACCATAG 57.567 40.909 10.72 6.37 0.00 2.23
2010 3758 4.855715 TTCGTGCCAAATTTTGACCATA 57.144 36.364 10.72 0.00 0.00 2.74
2011 3759 3.742433 TTCGTGCCAAATTTTGACCAT 57.258 38.095 10.72 0.00 0.00 3.55
2012 3760 3.526931 TTTCGTGCCAAATTTTGACCA 57.473 38.095 10.72 4.80 0.00 4.02
2013 3761 4.985409 TGTATTTCGTGCCAAATTTTGACC 59.015 37.500 10.72 2.35 0.00 4.02
2014 3762 6.517914 TTGTATTTCGTGCCAAATTTTGAC 57.482 33.333 10.72 0.00 0.00 3.18
2015 3763 6.146837 CCATTGTATTTCGTGCCAAATTTTGA 59.853 34.615 10.72 0.00 0.00 2.69
2016 3764 6.305639 CCATTGTATTTCGTGCCAAATTTTG 58.694 36.000 1.99 1.99 0.00 2.44
2017 3765 5.411053 CCCATTGTATTTCGTGCCAAATTTT 59.589 36.000 0.00 0.00 0.00 1.82
2018 3766 4.934602 CCCATTGTATTTCGTGCCAAATTT 59.065 37.500 0.00 0.00 0.00 1.82
2019 3767 4.502962 CCCATTGTATTTCGTGCCAAATT 58.497 39.130 0.00 0.00 0.00 1.82
2020 3768 3.118811 CCCCATTGTATTTCGTGCCAAAT 60.119 43.478 0.00 0.00 0.00 2.32
2021 3769 2.232452 CCCCATTGTATTTCGTGCCAAA 59.768 45.455 0.00 0.00 0.00 3.28
2022 3770 1.821753 CCCCATTGTATTTCGTGCCAA 59.178 47.619 0.00 0.00 0.00 4.52
2023 3771 1.004862 TCCCCATTGTATTTCGTGCCA 59.995 47.619 0.00 0.00 0.00 4.92
2024 3772 1.404035 GTCCCCATTGTATTTCGTGCC 59.596 52.381 0.00 0.00 0.00 5.01
2025 3773 1.404035 GGTCCCCATTGTATTTCGTGC 59.596 52.381 0.00 0.00 0.00 5.34
2026 3774 2.717390 TGGTCCCCATTGTATTTCGTG 58.283 47.619 0.00 0.00 0.00 4.35
2027 3775 3.443145 TTGGTCCCCATTGTATTTCGT 57.557 42.857 0.00 0.00 31.53 3.85
2028 3776 6.127591 TGTTTATTGGTCCCCATTGTATTTCG 60.128 38.462 0.00 0.00 31.53 3.46
2029 3777 7.039270 GTGTTTATTGGTCCCCATTGTATTTC 58.961 38.462 0.00 0.00 31.53 2.17
2030 3778 6.350612 CGTGTTTATTGGTCCCCATTGTATTT 60.351 38.462 0.00 0.00 31.53 1.40
2031 3779 5.126384 CGTGTTTATTGGTCCCCATTGTATT 59.874 40.000 0.00 0.00 31.53 1.89
2032 3780 4.642885 CGTGTTTATTGGTCCCCATTGTAT 59.357 41.667 0.00 0.00 31.53 2.29
2033 3781 4.011023 CGTGTTTATTGGTCCCCATTGTA 58.989 43.478 0.00 0.00 31.53 2.41
2034 3782 2.823154 CGTGTTTATTGGTCCCCATTGT 59.177 45.455 0.00 0.00 31.53 2.71
2035 3783 2.165437 CCGTGTTTATTGGTCCCCATTG 59.835 50.000 0.00 0.00 31.53 2.82
2036 3784 2.041891 TCCGTGTTTATTGGTCCCCATT 59.958 45.455 0.00 0.00 31.53 3.16
2037 3785 1.636519 TCCGTGTTTATTGGTCCCCAT 59.363 47.619 0.00 0.00 31.53 4.00
2038 3786 1.065647 TCCGTGTTTATTGGTCCCCA 58.934 50.000 0.00 0.00 0.00 4.96
2039 3787 1.456296 GTCCGTGTTTATTGGTCCCC 58.544 55.000 0.00 0.00 0.00 4.81
2040 3788 1.081094 CGTCCGTGTTTATTGGTCCC 58.919 55.000 0.00 0.00 0.00 4.46
2041 3789 1.081094 CCGTCCGTGTTTATTGGTCC 58.919 55.000 0.00 0.00 0.00 4.46
2042 3790 1.997606 CTCCGTCCGTGTTTATTGGTC 59.002 52.381 0.00 0.00 0.00 4.02
2043 3791 1.338389 CCTCCGTCCGTGTTTATTGGT 60.338 52.381 0.00 0.00 0.00 3.67
2044 3792 1.338389 ACCTCCGTCCGTGTTTATTGG 60.338 52.381 0.00 0.00 0.00 3.16
2045 3793 2.088950 ACCTCCGTCCGTGTTTATTG 57.911 50.000 0.00 0.00 0.00 1.90
2046 3794 2.827921 ACTACCTCCGTCCGTGTTTATT 59.172 45.455 0.00 0.00 0.00 1.40
2047 3795 2.450476 ACTACCTCCGTCCGTGTTTAT 58.550 47.619 0.00 0.00 0.00 1.40
2048 3796 1.909700 ACTACCTCCGTCCGTGTTTA 58.090 50.000 0.00 0.00 0.00 2.01
2049 3797 1.541588 GTACTACCTCCGTCCGTGTTT 59.458 52.381 0.00 0.00 0.00 2.83
2050 3798 1.168714 GTACTACCTCCGTCCGTGTT 58.831 55.000 0.00 0.00 0.00 3.32
2051 3799 0.678048 GGTACTACCTCCGTCCGTGT 60.678 60.000 0.00 0.00 34.73 4.49
2052 3800 0.677731 TGGTACTACCTCCGTCCGTG 60.678 60.000 6.79 0.00 39.58 4.94
2053 3801 0.038166 TTGGTACTACCTCCGTCCGT 59.962 55.000 6.79 0.00 39.58 4.69
2054 3802 1.135286 GTTTGGTACTACCTCCGTCCG 60.135 57.143 6.79 0.00 39.58 4.79
2055 3803 1.895131 TGTTTGGTACTACCTCCGTCC 59.105 52.381 6.79 0.00 39.58 4.79
2056 3804 2.821969 TCTGTTTGGTACTACCTCCGTC 59.178 50.000 6.79 0.00 39.58 4.79
2057 3805 2.824341 CTCTGTTTGGTACTACCTCCGT 59.176 50.000 6.79 0.00 39.58 4.69
2058 3806 2.824341 ACTCTGTTTGGTACTACCTCCG 59.176 50.000 6.79 0.00 39.58 4.63
2059 3807 3.195182 GGACTCTGTTTGGTACTACCTCC 59.805 52.174 6.79 0.00 39.58 4.30
2060 3808 3.195182 GGGACTCTGTTTGGTACTACCTC 59.805 52.174 6.79 0.00 39.58 3.85
2061 3809 3.171528 GGGACTCTGTTTGGTACTACCT 58.828 50.000 6.79 0.00 39.58 3.08
2062 3810 2.901839 TGGGACTCTGTTTGGTACTACC 59.098 50.000 0.00 0.00 39.22 3.18
2063 3811 4.040095 AGTTGGGACTCTGTTTGGTACTAC 59.960 45.833 0.00 0.00 0.00 2.73
2064 3812 4.228824 AGTTGGGACTCTGTTTGGTACTA 58.771 43.478 0.00 0.00 0.00 1.82
2065 3813 3.046374 AGTTGGGACTCTGTTTGGTACT 58.954 45.455 0.00 0.00 0.00 2.73
2066 3814 3.487120 AGTTGGGACTCTGTTTGGTAC 57.513 47.619 0.00 0.00 0.00 3.34
2164 3912 1.599797 CTGTCACGGTGTTTCCCCC 60.600 63.158 8.17 0.00 0.00 5.40
2169 3917 2.426522 CATCATCCTGTCACGGTGTTT 58.573 47.619 8.17 0.00 0.00 2.83
2190 3939 2.789409 AGGATGTGTTTGGTAGCCTC 57.211 50.000 0.00 0.00 0.00 4.70
2211 3960 3.747266 CCGTTTTGGGCGGTACAA 58.253 55.556 0.00 0.00 43.84 2.41
2219 3968 2.356194 GCAAGCAGCCGTTTTGGG 60.356 61.111 0.00 0.00 38.63 4.12
2220 3969 2.730604 CGCAAGCAGCCGTTTTGG 60.731 61.111 0.00 0.00 41.38 3.28
2221 3970 2.026014 ACGCAAGCAGCCGTTTTG 59.974 55.556 0.00 0.00 45.62 2.44
2222 3971 2.026014 CACGCAAGCAGCCGTTTT 59.974 55.556 0.00 0.00 45.62 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.