Multiple sequence alignment - TraesCS7B01G160200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G160200 chr7B 100.000 7261 0 0 1 7261 218822113 218814853 0.000000e+00 13409.0
1 TraesCS7B01G160200 chr7B 96.353 521 18 1 1 520 73430015 73429495 0.000000e+00 856.0
2 TraesCS7B01G160200 chr7B 95.951 247 10 0 518 764 607706961 607707207 1.130000e-107 401.0
3 TraesCS7B01G160200 chr7B 94.483 145 7 1 755 898 73429497 73429353 9.480000e-54 222.0
4 TraesCS7B01G160200 chr7B 89.375 160 7 7 5197 5347 541688298 541688140 7.430000e-45 193.0
5 TraesCS7B01G160200 chr7B 76.200 479 47 36 1862 2338 64035054 64034641 2.670000e-44 191.0
6 TraesCS7B01G160200 chr7B 82.787 122 15 6 6677 6793 1286804 1286684 3.580000e-18 104.0
7 TraesCS7B01G160200 chr7D 95.504 1557 60 5 3645 5196 243334724 243333173 0.000000e+00 2479.0
8 TraesCS7B01G160200 chr7D 95.803 1382 42 3 1025 2402 243336083 243334714 0.000000e+00 2217.0
9 TraesCS7B01G160200 chr7D 91.529 1452 65 21 5790 7189 243332692 243331247 0.000000e+00 1947.0
10 TraesCS7B01G160200 chr7D 96.546 608 21 0 5347 5954 243333180 243332573 0.000000e+00 1007.0
11 TraesCS7B01G160200 chr7D 90.871 241 21 1 4900 5139 456644178 456644418 9.090000e-84 322.0
12 TraesCS7B01G160200 chr7D 76.258 497 49 37 1862 2354 105432660 105432229 4.440000e-47 200.0
13 TraesCS7B01G160200 chr7D 87.778 90 8 3 6992 7079 243331365 243331277 1.290000e-17 102.0
14 TraesCS7B01G160200 chr7D 88.608 79 9 0 6666 6744 586759914 586759836 6.000000e-16 97.1
15 TraesCS7B01G160200 chr7D 91.176 68 6 0 6677 6744 590491501 590491434 7.760000e-15 93.5
16 TraesCS7B01G160200 chr7D 88.000 75 9 0 6670 6744 587750413 587750487 1.000000e-13 89.8
17 TraesCS7B01G160200 chr6B 98.779 1228 10 3 2412 3636 684936839 684938064 0.000000e+00 2180.0
18 TraesCS7B01G160200 chr6B 98.538 1231 16 2 2412 3642 293105033 293106261 0.000000e+00 2172.0
19 TraesCS7B01G160200 chr6B 88.333 240 25 3 4900 5137 702494598 702494360 1.190000e-72 285.0
20 TraesCS7B01G160200 chr6B 85.535 159 7 8 5197 5346 557418354 557418203 1.260000e-32 152.0
21 TraesCS7B01G160200 chr5B 98.700 1231 11 3 2415 3642 136052808 136051580 0.000000e+00 2180.0
22 TraesCS7B01G160200 chr5B 97.095 241 7 0 517 757 28603585 28603825 2.440000e-109 407.0
23 TraesCS7B01G160200 chr5B 97.095 241 7 0 517 757 271808050 271807810 2.440000e-109 407.0
24 TraesCS7B01G160200 chr5B 82.071 396 60 7 1066 1456 476015868 476015479 1.950000e-85 327.0
25 TraesCS7B01G160200 chr5B 77.352 287 44 16 4153 4430 476014559 476014285 4.540000e-32 150.0
26 TraesCS7B01G160200 chr5B 90.909 110 5 1 5196 5300 465998688 465998797 7.590000e-30 143.0
27 TraesCS7B01G160200 chr5B 83.974 156 18 5 6795 6946 660592534 660592686 7.590000e-30 143.0
28 TraesCS7B01G160200 chr5B 83.444 151 17 6 5188 5335 55183002 55182857 4.570000e-27 134.0
29 TraesCS7B01G160200 chr4B 98.775 1224 13 2 2415 3638 277405875 277404654 0.000000e+00 2176.0
30 TraesCS7B01G160200 chr4B 98.384 1238 14 4 2415 3649 295677459 295676225 0.000000e+00 2170.0
31 TraesCS7B01G160200 chr4B 89.744 234 21 3 4900 5131 381623458 381623690 5.510000e-76 296.0
32 TraesCS7B01G160200 chr4B 84.615 156 11 7 5192 5346 27932369 27932226 7.590000e-30 143.0
33 TraesCS7B01G160200 chr3A 98.538 1231 16 2 2412 3642 91015785 91017013 0.000000e+00 2172.0
34 TraesCS7B01G160200 chr3A 89.655 522 41 8 1 520 699355974 699355464 0.000000e+00 652.0
35 TraesCS7B01G160200 chr1B 98.618 1230 12 3 2415 3641 368546870 368545643 0.000000e+00 2172.0
36 TraesCS7B01G160200 chr1B 96.680 241 8 0 517 757 229946119 229945879 1.130000e-107 401.0
37 TraesCS7B01G160200 chr1B 89.958 239 21 3 4900 5136 108443008 108443245 9.150000e-79 305.0
38 TraesCS7B01G160200 chr1B 86.420 162 8 8 5197 5346 606317324 606317165 1.620000e-36 165.0
39 TraesCS7B01G160200 chr1B 94.231 104 6 0 5197 5300 256197540 256197437 7.540000e-35 159.0
40 TraesCS7B01G160200 chr1B 83.721 86 7 5 896 981 288557003 288557081 2.810000e-09 75.0
41 TraesCS7B01G160200 chr1A 98.457 1231 17 2 2412 3642 7342313 7343541 0.000000e+00 2167.0
42 TraesCS7B01G160200 chr1A 89.655 522 39 9 1 520 355423251 355423759 0.000000e+00 651.0
43 TraesCS7B01G160200 chr1A 88.292 521 47 9 1 519 495733881 495733373 4.820000e-171 612.0
44 TraesCS7B01G160200 chr1A 90.640 203 17 2 4904 5104 330570227 330570025 1.200000e-67 268.0
45 TraesCS7B01G160200 chr1A 83.117 154 8 6 5197 5335 181768970 181768820 2.750000e-24 124.0
46 TraesCS7B01G160200 chr1A 85.714 119 13 3 6677 6791 54013474 54013356 9.890000e-24 122.0
47 TraesCS7B01G160200 chr1A 93.617 47 3 0 933 979 403041993 403041947 3.630000e-08 71.3
48 TraesCS7B01G160200 chr1A 85.714 70 6 4 6677 6744 441750282 441750349 3.630000e-08 71.3
49 TraesCS7B01G160200 chr2B 98.302 1237 15 4 2415 3647 46598196 46596962 0.000000e+00 2163.0
50 TraesCS7B01G160200 chr2B 88.889 522 39 10 1 520 38395419 38395923 6.180000e-175 625.0
51 TraesCS7B01G160200 chr2B 89.101 523 29 9 1 520 637899759 637900256 6.180000e-175 625.0
52 TraesCS7B01G160200 chr2B 97.095 241 7 0 517 757 704534513 704534753 2.440000e-109 407.0
53 TraesCS7B01G160200 chr2B 92.414 145 10 1 755 898 637900254 637900398 9.550000e-49 206.0
54 TraesCS7B01G160200 chr2B 84.507 71 11 0 3674 3744 423906621 423906551 3.630000e-08 71.3
55 TraesCS7B01G160200 chr7A 94.189 1394 57 11 1015 2402 258416034 258414659 0.000000e+00 2104.0
56 TraesCS7B01G160200 chr7A 96.613 1181 29 4 5347 6525 258413106 258411935 0.000000e+00 1949.0
57 TraesCS7B01G160200 chr7A 95.495 1110 44 3 3645 4750 258414669 258413562 0.000000e+00 1768.0
58 TraesCS7B01G160200 chr7A 89.290 887 55 17 6352 7208 258411934 258411058 0.000000e+00 1075.0
59 TraesCS7B01G160200 chr7A 90.230 522 38 8 1 520 119815692 119815182 0.000000e+00 669.0
60 TraesCS7B01G160200 chr7A 90.019 521 39 8 1 520 428627426 428626918 0.000000e+00 662.0
61 TraesCS7B01G160200 chr7A 96.190 105 3 1 4800 4904 258413264 258413161 3.480000e-38 171.0
62 TraesCS7B01G160200 chr7A 95.192 104 5 0 5197 5300 44439638 44439535 1.620000e-36 165.0
63 TraesCS7B01G160200 chr7A 100.000 65 0 0 5132 5196 258413163 258413099 3.560000e-23 121.0
64 TraesCS7B01G160200 chr7A 90.000 90 6 3 6992 7079 258411196 258411108 5.950000e-21 113.0
65 TraesCS7B01G160200 chr7A 93.333 75 5 0 6670 6744 134553898 134553824 2.140000e-20 111.0
66 TraesCS7B01G160200 chr2D 94.242 521 24 4 1 520 64953930 64953415 0.000000e+00 791.0
67 TraesCS7B01G160200 chr2D 88.285 239 27 1 4900 5137 519378308 519378070 1.190000e-72 285.0
68 TraesCS7B01G160200 chr2D 88.462 234 25 2 4900 5131 566250746 566250513 1.540000e-71 281.0
69 TraesCS7B01G160200 chr2D 86.307 241 31 2 4900 5138 647839454 647839694 2.010000e-65 261.0
70 TraesCS7B01G160200 chr2D 94.483 145 7 1 755 898 64953417 64953273 9.480000e-54 222.0
71 TraesCS7B01G160200 chr2D 93.846 130 6 1 5217 5346 140307852 140307725 2.070000e-45 195.0
72 TraesCS7B01G160200 chr2D 82.400 125 16 5 6677 6796 647531700 647531577 3.580000e-18 104.0
73 TraesCS7B01G160200 chr2D 90.667 75 7 0 6670 6744 20192323 20192397 4.640000e-17 100.0
74 TraesCS7B01G160200 chr3B 98.745 239 3 0 517 755 815196229 815195991 6.730000e-115 425.0
75 TraesCS7B01G160200 chr3B 90.795 239 21 1 4900 5137 252610832 252610594 1.180000e-82 318.0
76 TraesCS7B01G160200 chr3B 87.967 241 24 5 4900 5137 451184488 451184726 5.550000e-71 279.0
77 TraesCS7B01G160200 chr3B 90.441 136 5 4 5200 5335 821850677 821850804 9.680000e-39 172.0
78 TraesCS7B01G160200 chr3B 94.231 104 6 0 5197 5300 629288723 629288826 7.540000e-35 159.0
79 TraesCS7B01G160200 chr3B 78.689 122 21 4 6827 6946 59180882 59181000 7.810000e-10 76.8
80 TraesCS7B01G160200 chrUn 97.500 240 6 0 518 757 59805325 59805086 1.890000e-110 411.0
81 TraesCS7B01G160200 chrUn 96.356 247 9 0 511 757 119206046 119206292 2.440000e-109 407.0
82 TraesCS7B01G160200 chrUn 85.345 232 28 6 4908 5137 238402245 238402018 1.220000e-57 235.0
83 TraesCS7B01G160200 chrUn 87.129 202 22 4 4906 5104 291717739 291717939 7.330000e-55 226.0
84 TraesCS7B01G160200 chrUn 87.129 202 22 4 4906 5104 291935248 291935448 7.330000e-55 226.0
85 TraesCS7B01G160200 chrUn 87.437 199 21 4 4909 5104 362255068 362254871 7.330000e-55 226.0
86 TraesCS7B01G160200 chrUn 87.129 202 22 4 4906 5104 464689750 464689950 7.330000e-55 226.0
87 TraesCS7B01G160200 chrUn 82.845 239 35 6 4900 5135 478578656 478578891 7.380000e-50 209.0
88 TraesCS7B01G160200 chrUn 88.732 142 15 1 4947 5087 126885914 126885773 9.680000e-39 172.0
89 TraesCS7B01G160200 chrUn 87.943 141 15 2 4989 5127 126836900 126837040 1.620000e-36 165.0
90 TraesCS7B01G160200 chrUn 93.827 81 5 0 5220 5300 75469239 75469319 9.890000e-24 122.0
91 TraesCS7B01G160200 chrUn 85.185 108 16 0 5031 5138 26924311 26924204 2.140000e-20 111.0
92 TraesCS7B01G160200 chrUn 86.667 90 12 0 4900 4989 854611 854522 4.640000e-17 100.0
93 TraesCS7B01G160200 chrUn 86.667 90 12 0 4900 4989 343979439 343979350 4.640000e-17 100.0
94 TraesCS7B01G160200 chrUn 86.667 90 12 0 4900 4989 458006482 458006393 4.640000e-17 100.0
95 TraesCS7B01G160200 chrUn 87.342 79 10 0 6666 6744 22365284 22365206 2.790000e-14 91.6
96 TraesCS7B01G160200 chrUn 88.235 68 8 0 6677 6744 111138807 111138740 1.680000e-11 82.4
97 TraesCS7B01G160200 chr6D 97.107 242 7 0 519 760 459066281 459066522 6.780000e-110 409.0
98 TraesCS7B01G160200 chr6D 90.594 202 18 1 4904 5104 175218209 175218410 4.320000e-67 267.0
99 TraesCS7B01G160200 chr6D 90.594 202 18 1 4904 5104 233093124 233092923 4.320000e-67 267.0
100 TraesCS7B01G160200 chr6D 86.250 240 31 2 4900 5137 153115385 153115146 7.230000e-65 259.0
101 TraesCS7B01G160200 chr6D 89.000 200 20 2 4907 5104 213307513 213307314 5.630000e-61 246.0
102 TraesCS7B01G160200 chr6D 88.614 202 22 1 4904 5104 71767676 71767475 2.020000e-60 244.0
103 TraesCS7B01G160200 chr6D 88.614 202 22 1 4904 5104 221617389 221617590 2.020000e-60 244.0
104 TraesCS7B01G160200 chr6D 88.670 203 20 3 4904 5104 223460425 223460626 2.020000e-60 244.0
105 TraesCS7B01G160200 chr6D 88.177 203 22 2 4904 5104 261203432 261203634 2.620000e-59 241.0
106 TraesCS7B01G160200 chr6D 84.583 240 29 7 4900 5136 200818483 200818717 1.580000e-56 231.0
107 TraesCS7B01G160200 chr6D 94.231 104 6 0 5197 5300 131679868 131679765 7.540000e-35 159.0
108 TraesCS7B01G160200 chr6D 92.308 78 6 0 5223 5300 126435274 126435197 2.140000e-20 111.0
109 TraesCS7B01G160200 chr6D 82.400 125 10 5 5223 5347 303635898 303635786 1.670000e-16 99.0
110 TraesCS7B01G160200 chr6D 87.805 82 9 1 1280 1360 404602779 404602698 2.160000e-15 95.3
111 TraesCS7B01G160200 chr5D 82.071 396 60 7 1066 1456 396142222 396141833 1.950000e-85 327.0
112 TraesCS7B01G160200 chr5D 87.500 240 26 4 4900 5137 118058457 118058220 2.580000e-69 274.0
113 TraesCS7B01G160200 chr5D 85.062 241 35 1 4900 5139 352315969 352315729 2.020000e-60 244.0
114 TraesCS7B01G160200 chr5D 77.509 289 44 16 4151 4430 396140920 396140644 3.510000e-33 154.0
115 TraesCS7B01G160200 chr5D 90.385 104 10 0 5197 5300 325957636 325957533 3.530000e-28 137.0
116 TraesCS7B01G160200 chr5D 88.608 79 9 0 6666 6744 529082846 529082924 6.000000e-16 97.1
117 TraesCS7B01G160200 chr5D 85.393 89 9 4 6825 6911 356618262 356618176 1.000000e-13 89.8
118 TraesCS7B01G160200 chr5D 93.750 48 3 0 5253 5300 387623904 387623951 1.010000e-08 73.1
119 TraesCS7B01G160200 chr5D 100.000 38 0 0 5239 5276 185200717 185200680 3.630000e-08 71.3
120 TraesCS7B01G160200 chr5A 81.818 396 61 7 1066 1456 501921235 501920846 9.090000e-84 322.0
121 TraesCS7B01G160200 chr3D 89.212 241 23 3 4900 5139 326428390 326428628 1.530000e-76 298.0
122 TraesCS7B01G160200 chr3D 88.938 226 23 2 4912 5136 529480381 529480157 2.000000e-70 278.0
123 TraesCS7B01G160200 chr3D 87.029 239 30 1 4900 5137 315485310 315485548 1.200000e-67 268.0
124 TraesCS7B01G160200 chr3D 95.161 62 3 0 5239 5300 105434787 105434726 1.670000e-16 99.0
125 TraesCS7B01G160200 chr3D 88.608 79 9 0 6666 6744 20694868 20694790 6.000000e-16 97.1
126 TraesCS7B01G160200 chr3D 87.342 79 10 0 6666 6744 48822512 48822590 2.790000e-14 91.6
127 TraesCS7B01G160200 chr4D 92.000 200 14 2 4906 5104 332489309 332489507 5.550000e-71 279.0
128 TraesCS7B01G160200 chr4D 91.584 202 16 1 4904 5104 92816754 92816553 2.000000e-70 278.0
129 TraesCS7B01G160200 chr4D 79.845 129 22 3 6670 6794 87262132 87262004 2.790000e-14 91.6
130 TraesCS7B01G160200 chr4D 87.342 79 10 0 6666 6744 320240282 320240360 2.790000e-14 91.6
131 TraesCS7B01G160200 chr4D 86.667 75 10 0 6670 6744 465072317 465072391 4.670000e-12 84.2
132 TraesCS7B01G160200 chr1D 90.099 202 18 2 4904 5104 388069822 388069622 2.010000e-65 261.0
133 TraesCS7B01G160200 chr1D 86.066 244 31 3 4899 5140 409501711 409501469 7.230000e-65 259.0
134 TraesCS7B01G160200 chr1D 89.604 202 19 2 4904 5104 335841819 335842019 9.350000e-64 255.0
135 TraesCS7B01G160200 chr1D 89.604 202 20 1 4904 5104 425916979 425917180 9.350000e-64 255.0
136 TraesCS7B01G160200 chr1D 85.039 254 33 5 4900 5150 8103641 8103390 3.360000e-63 254.0
137 TraesCS7B01G160200 chr1D 85.417 240 33 2 4899 5137 323916794 323916556 1.560000e-61 248.0
138 TraesCS7B01G160200 chr1D 85.185 243 33 3 4900 5140 220842009 220842250 5.630000e-61 246.0
139 TraesCS7B01G160200 chr1D 84.232 241 36 2 4898 5137 415392687 415392926 4.380000e-57 233.0
140 TraesCS7B01G160200 chr1D 91.000 100 9 0 5197 5296 178456972 178456873 1.270000e-27 135.0
141 TraesCS7B01G160200 chr1D 78.395 162 14 18 6677 6822 452507548 452507392 1.300000e-12 86.1
142 TraesCS7B01G160200 chr1D 95.000 40 1 1 6827 6865 470409346 470409385 2.190000e-05 62.1
143 TraesCS7B01G160200 chr6A 90.909 132 8 2 5197 5328 514023376 514023249 2.690000e-39 174.0
144 TraesCS7B01G160200 chr6A 91.818 110 3 1 5197 5300 486955763 486955872 1.630000e-31 148.0
145 TraesCS7B01G160200 chr6A 90.000 90 9 0 5223 5312 412383184 412383095 4.600000e-22 117.0
146 TraesCS7B01G160200 chr2A 82.353 119 15 5 6677 6790 772949424 772949541 1.670000e-16 99.0
147 TraesCS7B01G160200 chr4A 79.688 128 23 2 6670 6794 509994925 509995052 1.000000e-13 89.8
148 TraesCS7B01G160200 chr4A 85.714 84 5 4 896 979 513094823 513094747 1.680000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G160200 chr7B 218814853 218822113 7260 True 13409.0 13409 100.000000 1 7261 1 chr7B.!!$R3 7260
1 TraesCS7B01G160200 chr7B 73429353 73430015 662 True 539.0 856 95.418000 1 898 2 chr7B.!!$R5 897
2 TraesCS7B01G160200 chr7D 243331247 243336083 4836 True 1550.4 2479 93.432000 1025 7189 5 chr7D.!!$R4 6164
3 TraesCS7B01G160200 chr6B 684936839 684938064 1225 False 2180.0 2180 98.779000 2412 3636 1 chr6B.!!$F2 1224
4 TraesCS7B01G160200 chr6B 293105033 293106261 1228 False 2172.0 2172 98.538000 2412 3642 1 chr6B.!!$F1 1230
5 TraesCS7B01G160200 chr5B 136051580 136052808 1228 True 2180.0 2180 98.700000 2415 3642 1 chr5B.!!$R2 1227
6 TraesCS7B01G160200 chr5B 476014285 476015868 1583 True 238.5 327 79.711500 1066 4430 2 chr5B.!!$R4 3364
7 TraesCS7B01G160200 chr4B 277404654 277405875 1221 True 2176.0 2176 98.775000 2415 3638 1 chr4B.!!$R2 1223
8 TraesCS7B01G160200 chr4B 295676225 295677459 1234 True 2170.0 2170 98.384000 2415 3649 1 chr4B.!!$R3 1234
9 TraesCS7B01G160200 chr3A 91015785 91017013 1228 False 2172.0 2172 98.538000 2412 3642 1 chr3A.!!$F1 1230
10 TraesCS7B01G160200 chr3A 699355464 699355974 510 True 652.0 652 89.655000 1 520 1 chr3A.!!$R1 519
11 TraesCS7B01G160200 chr1B 368545643 368546870 1227 True 2172.0 2172 98.618000 2415 3641 1 chr1B.!!$R3 1226
12 TraesCS7B01G160200 chr1A 7342313 7343541 1228 False 2167.0 2167 98.457000 2412 3642 1 chr1A.!!$F1 1230
13 TraesCS7B01G160200 chr1A 355423251 355423759 508 False 651.0 651 89.655000 1 520 1 chr1A.!!$F2 519
14 TraesCS7B01G160200 chr1A 495733373 495733881 508 True 612.0 612 88.292000 1 519 1 chr1A.!!$R5 518
15 TraesCS7B01G160200 chr2B 46596962 46598196 1234 True 2163.0 2163 98.302000 2415 3647 1 chr2B.!!$R1 1232
16 TraesCS7B01G160200 chr2B 38395419 38395923 504 False 625.0 625 88.889000 1 520 1 chr2B.!!$F1 519
17 TraesCS7B01G160200 chr2B 637899759 637900398 639 False 415.5 625 90.757500 1 898 2 chr2B.!!$F3 897
18 TraesCS7B01G160200 chr7A 258411058 258416034 4976 True 1043.0 2104 94.539571 1015 7208 7 chr7A.!!$R5 6193
19 TraesCS7B01G160200 chr7A 119815182 119815692 510 True 669.0 669 90.230000 1 520 1 chr7A.!!$R2 519
20 TraesCS7B01G160200 chr7A 428626918 428627426 508 True 662.0 662 90.019000 1 520 1 chr7A.!!$R4 519
21 TraesCS7B01G160200 chr2D 64953273 64953930 657 True 506.5 791 94.362500 1 898 2 chr2D.!!$R5 897
22 TraesCS7B01G160200 chr5D 396140644 396142222 1578 True 240.5 327 79.790000 1066 4430 2 chr5D.!!$R6 3364

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
877 886 0.250234 ACACCGTGACAGGATGATGG 59.750 55.0 5.28 0.0 39.69 3.51 F
1453 1466 0.384669 CCAGGTCGTCGGAAGGTATC 59.615 60.0 0.00 0.0 0.00 2.24 F
1981 1994 0.037590 ATACCCAAAAGCAGCACCGA 59.962 50.0 0.00 0.0 0.00 4.69 F
1982 1995 0.179015 TACCCAAAAGCAGCACCGAA 60.179 50.0 0.00 0.0 0.00 4.30 F
2377 2394 1.286305 ACCCCAACCAGTGTCCTTGT 61.286 55.0 0.00 0.0 0.00 3.16 F
3798 3955 0.394352 CTATTTTCTGCTGGGCGGGT 60.394 55.0 0.00 0.0 35.34 5.28 F
5213 5664 0.366871 CTCATGGTTTTCGAGTCGCG 59.633 55.0 7.92 0.0 42.69 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1963 1976 0.179015 TTCGGTGCTGCTTTTGGGTA 60.179 50.000 0.00 0.0 0.00 3.69 R
2355 2372 0.400815 AGGACACTGGTTGGGGTACA 60.401 55.000 0.00 0.0 0.00 2.90 R
3533 3689 0.681887 CATGGCTCTGGCACATGGAA 60.682 55.000 7.68 0.0 41.84 3.53 R
3669 3826 0.815213 GCGACATGGCAGGATAAGCA 60.815 55.000 5.99 0.0 0.00 3.91 R
4276 4473 1.202582 ACTGGAACGTCCTCAAGATCG 59.797 52.381 0.00 0.0 37.46 3.69 R
5232 5683 0.037046 TTTTTCCGAGTCGCTACCCC 60.037 55.000 7.12 0.0 0.00 4.95 R
7208 7922 0.900182 CCCCCAGCCTTTTTCCAGTC 60.900 60.000 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 140 8.184192 AGTGTTTTTGTATCTGTCTCACAAAAG 58.816 33.333 10.59 0.00 46.75 2.27
244 246 7.223387 CGAGAAGATGTCATGTTGATTCACATA 59.777 37.037 0.00 0.00 35.51 2.29
394 401 1.221466 CGAATGATGTATGCCGCCGT 61.221 55.000 0.00 0.00 0.00 5.68
478 485 3.837146 CCATCTCAGATACAGCCTACCAT 59.163 47.826 0.00 0.00 0.00 3.55
484 491 6.554982 TCTCAGATACAGCCTACCATACAAAT 59.445 38.462 0.00 0.00 0.00 2.32
498 506 1.251251 ACAAATTCTGAGCCCAGCAC 58.749 50.000 0.00 0.00 40.20 4.40
520 528 2.623889 GTCCCGACAGATACATGCTACT 59.376 50.000 0.00 0.00 0.00 2.57
521 529 3.819337 GTCCCGACAGATACATGCTACTA 59.181 47.826 0.00 0.00 0.00 1.82
522 530 3.819337 TCCCGACAGATACATGCTACTAC 59.181 47.826 0.00 0.00 0.00 2.73
523 531 3.057456 CCCGACAGATACATGCTACTACC 60.057 52.174 0.00 0.00 0.00 3.18
524 532 3.821600 CCGACAGATACATGCTACTACCT 59.178 47.826 0.00 0.00 0.00 3.08
525 533 4.083217 CCGACAGATACATGCTACTACCTC 60.083 50.000 0.00 0.00 0.00 3.85
526 534 4.083217 CGACAGATACATGCTACTACCTCC 60.083 50.000 0.00 0.00 0.00 4.30
527 535 3.821600 ACAGATACATGCTACTACCTCCG 59.178 47.826 0.00 0.00 0.00 4.63
528 536 3.821600 CAGATACATGCTACTACCTCCGT 59.178 47.826 0.00 0.00 0.00 4.69
529 537 4.073549 AGATACATGCTACTACCTCCGTC 58.926 47.826 0.00 0.00 0.00 4.79
530 538 1.400737 ACATGCTACTACCTCCGTCC 58.599 55.000 0.00 0.00 0.00 4.79
531 539 1.063867 ACATGCTACTACCTCCGTCCT 60.064 52.381 0.00 0.00 0.00 3.85
532 540 1.338337 CATGCTACTACCTCCGTCCTG 59.662 57.143 0.00 0.00 0.00 3.86
533 541 0.395311 TGCTACTACCTCCGTCCTGG 60.395 60.000 0.00 0.00 40.09 4.45
534 542 0.395448 GCTACTACCTCCGTCCTGGT 60.395 60.000 0.00 0.00 39.52 4.00
535 543 1.959028 GCTACTACCTCCGTCCTGGTT 60.959 57.143 0.00 0.00 39.52 3.67
536 544 2.454538 CTACTACCTCCGTCCTGGTTT 58.545 52.381 0.00 0.00 39.52 3.27
537 545 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
538 546 3.111741 ACTACCTCCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 39.52 1.40
539 547 4.255510 ACTACCTCCGTCCTGGTTTATA 57.744 45.455 0.00 0.00 39.52 0.98
540 548 4.213513 ACTACCTCCGTCCTGGTTTATAG 58.786 47.826 0.00 0.00 39.52 1.31
541 549 2.395619 ACCTCCGTCCTGGTTTATAGG 58.604 52.381 0.00 0.00 39.52 2.57
542 550 2.292719 ACCTCCGTCCTGGTTTATAGGT 60.293 50.000 0.00 0.00 35.62 3.08
543 551 2.364647 CCTCCGTCCTGGTTTATAGGTC 59.635 54.545 0.00 0.00 39.52 3.85
544 552 2.364647 CTCCGTCCTGGTTTATAGGTCC 59.635 54.545 0.00 0.00 39.52 4.46
545 553 1.415289 CCGTCCTGGTTTATAGGTCCC 59.585 57.143 0.00 0.00 36.67 4.46
546 554 1.415289 CGTCCTGGTTTATAGGTCCCC 59.585 57.143 0.00 0.00 36.67 4.81
547 555 2.772930 GTCCTGGTTTATAGGTCCCCT 58.227 52.381 0.00 0.00 36.67 4.79
548 556 3.120898 GTCCTGGTTTATAGGTCCCCTT 58.879 50.000 0.00 0.00 36.67 3.95
549 557 3.526430 GTCCTGGTTTATAGGTCCCCTTT 59.474 47.826 0.00 0.00 36.67 3.11
550 558 3.526019 TCCTGGTTTATAGGTCCCCTTTG 59.474 47.826 0.00 0.00 36.67 2.77
551 559 3.268595 CCTGGTTTATAGGTCCCCTTTGT 59.731 47.826 0.00 0.00 34.61 2.83
552 560 4.475747 CCTGGTTTATAGGTCCCCTTTGTA 59.524 45.833 0.00 0.00 34.61 2.41
553 561 5.397559 CCTGGTTTATAGGTCCCCTTTGTAG 60.398 48.000 0.00 0.00 34.61 2.74
554 562 5.102967 TGGTTTATAGGTCCCCTTTGTAGT 58.897 41.667 0.00 0.00 34.61 2.73
555 563 5.552766 TGGTTTATAGGTCCCCTTTGTAGTT 59.447 40.000 0.00 0.00 34.61 2.24
556 564 6.045813 TGGTTTATAGGTCCCCTTTGTAGTTT 59.954 38.462 0.00 0.00 34.61 2.66
557 565 6.376299 GGTTTATAGGTCCCCTTTGTAGTTTG 59.624 42.308 0.00 0.00 34.61 2.93
558 566 6.707273 TTATAGGTCCCCTTTGTAGTTTGT 57.293 37.500 0.00 0.00 34.61 2.83
559 567 3.223674 AGGTCCCCTTTGTAGTTTGTG 57.776 47.619 0.00 0.00 0.00 3.33
560 568 2.512476 AGGTCCCCTTTGTAGTTTGTGT 59.488 45.455 0.00 0.00 0.00 3.72
561 569 2.882761 GGTCCCCTTTGTAGTTTGTGTC 59.117 50.000 0.00 0.00 0.00 3.67
562 570 3.547746 GTCCCCTTTGTAGTTTGTGTCA 58.452 45.455 0.00 0.00 0.00 3.58
563 571 3.949113 GTCCCCTTTGTAGTTTGTGTCAA 59.051 43.478 0.00 0.00 0.00 3.18
564 572 4.399934 GTCCCCTTTGTAGTTTGTGTCAAA 59.600 41.667 0.00 0.00 0.00 2.69
565 573 5.068591 GTCCCCTTTGTAGTTTGTGTCAAAT 59.931 40.000 0.00 0.00 31.08 2.32
566 574 5.659079 TCCCCTTTGTAGTTTGTGTCAAATT 59.341 36.000 0.00 0.00 31.08 1.82
567 575 6.155393 TCCCCTTTGTAGTTTGTGTCAAATTT 59.845 34.615 0.00 0.00 31.08 1.82
568 576 6.821160 CCCCTTTGTAGTTTGTGTCAAATTTT 59.179 34.615 0.00 0.00 31.08 1.82
569 577 7.201600 CCCCTTTGTAGTTTGTGTCAAATTTTG 60.202 37.037 2.59 2.59 31.08 2.44
570 578 7.547370 CCCTTTGTAGTTTGTGTCAAATTTTGA 59.453 33.333 7.74 7.74 37.33 2.69
607 615 9.539825 AACTAACAAAATGTTAATGCATGTCAA 57.460 25.926 0.00 0.00 41.70 3.18
608 616 9.195411 ACTAACAAAATGTTAATGCATGTCAAG 57.805 29.630 0.00 0.00 41.70 3.02
609 617 9.409312 CTAACAAAATGTTAATGCATGTCAAGA 57.591 29.630 0.00 0.00 41.70 3.02
610 618 8.659925 AACAAAATGTTAATGCATGTCAAGAA 57.340 26.923 0.00 0.00 39.09 2.52
611 619 8.659925 ACAAAATGTTAATGCATGTCAAGAAA 57.340 26.923 0.00 0.00 0.00 2.52
612 620 9.107177 ACAAAATGTTAATGCATGTCAAGAAAA 57.893 25.926 0.00 0.00 0.00 2.29
613 621 9.932699 CAAAATGTTAATGCATGTCAAGAAAAA 57.067 25.926 0.00 0.00 0.00 1.94
624 632 9.361315 TGCATGTCAAGAAAAATTATCTCATTG 57.639 29.630 0.00 0.00 0.00 2.82
625 633 8.814235 GCATGTCAAGAAAAATTATCTCATTGG 58.186 33.333 0.00 0.00 0.00 3.16
631 639 9.793252 CAAGAAAAATTATCTCATTGGATTCGT 57.207 29.630 0.00 0.00 0.00 3.85
640 648 6.344572 TCTCATTGGATTCGTATTTGAACG 57.655 37.500 0.00 0.00 44.19 3.95
641 649 5.872617 TCTCATTGGATTCGTATTTGAACGT 59.127 36.000 0.00 0.00 43.31 3.99
642 650 7.036829 TCTCATTGGATTCGTATTTGAACGTA 58.963 34.615 0.00 0.00 43.31 3.57
643 651 7.222031 TCTCATTGGATTCGTATTTGAACGTAG 59.778 37.037 0.00 0.00 43.31 3.51
675 683 7.627585 AAATATAATGTTTGATGACATGCGC 57.372 32.000 0.00 0.00 40.03 6.09
676 684 1.898938 AATGTTTGATGACATGCGCG 58.101 45.000 0.00 0.00 40.03 6.86
677 685 1.085893 ATGTTTGATGACATGCGCGA 58.914 45.000 12.10 0.00 38.75 5.87
678 686 0.871057 TGTTTGATGACATGCGCGAA 59.129 45.000 12.10 0.00 0.00 4.70
679 687 1.250476 GTTTGATGACATGCGCGAAC 58.750 50.000 12.10 0.00 0.00 3.95
680 688 0.871057 TTTGATGACATGCGCGAACA 59.129 45.000 12.10 0.00 0.00 3.18
681 689 1.085893 TTGATGACATGCGCGAACAT 58.914 45.000 12.10 0.63 0.00 2.71
682 690 1.085893 TGATGACATGCGCGAACATT 58.914 45.000 12.10 0.00 0.00 2.71
683 691 1.468127 TGATGACATGCGCGAACATTT 59.532 42.857 12.10 0.00 0.00 2.32
684 692 2.095314 TGATGACATGCGCGAACATTTT 60.095 40.909 12.10 0.00 0.00 1.82
685 693 1.684142 TGACATGCGCGAACATTTTG 58.316 45.000 12.10 0.00 0.00 2.44
686 694 1.001924 TGACATGCGCGAACATTTTGT 60.002 42.857 12.10 0.00 0.00 2.83
687 695 2.050691 GACATGCGCGAACATTTTGTT 58.949 42.857 12.10 0.00 44.37 2.83
688 696 3.230355 GACATGCGCGAACATTTTGTTA 58.770 40.909 12.10 0.00 41.28 2.41
689 697 3.233578 ACATGCGCGAACATTTTGTTAG 58.766 40.909 12.10 0.00 41.28 2.34
690 698 3.233578 CATGCGCGAACATTTTGTTAGT 58.766 40.909 12.10 0.00 41.28 2.24
691 699 3.341857 TGCGCGAACATTTTGTTAGTT 57.658 38.095 12.10 0.00 41.28 2.24
692 700 3.696898 TGCGCGAACATTTTGTTAGTTT 58.303 36.364 12.10 0.00 41.28 2.66
693 701 4.845387 TGCGCGAACATTTTGTTAGTTTA 58.155 34.783 12.10 0.00 41.28 2.01
694 702 5.271625 TGCGCGAACATTTTGTTAGTTTAA 58.728 33.333 12.10 0.00 41.28 1.52
695 703 5.915758 TGCGCGAACATTTTGTTAGTTTAAT 59.084 32.000 12.10 0.00 41.28 1.40
696 704 6.087028 TGCGCGAACATTTTGTTAGTTTAATC 59.913 34.615 12.10 0.00 41.28 1.75
697 705 6.304683 GCGCGAACATTTTGTTAGTTTAATCT 59.695 34.615 12.10 0.00 41.28 2.40
698 706 7.479291 GCGCGAACATTTTGTTAGTTTAATCTA 59.521 33.333 12.10 0.00 41.28 1.98
699 707 9.485591 CGCGAACATTTTGTTAGTTTAATCTAT 57.514 29.630 0.00 0.00 41.28 1.98
714 722 8.592809 AGTTTAATCTATGGTCAAAATTTGGCA 58.407 29.630 12.62 0.00 36.88 4.92
715 723 8.655970 GTTTAATCTATGGTCAAAATTTGGCAC 58.344 33.333 12.62 1.03 36.88 5.01
716 724 4.433186 TCTATGGTCAAAATTTGGCACG 57.567 40.909 12.62 0.00 36.88 5.34
717 725 4.075682 TCTATGGTCAAAATTTGGCACGA 58.924 39.130 12.62 0.00 36.88 4.35
718 726 3.742433 ATGGTCAAAATTTGGCACGAA 57.258 38.095 12.62 0.00 36.88 3.85
719 727 3.526931 TGGTCAAAATTTGGCACGAAA 57.473 38.095 12.62 0.00 36.88 3.46
720 728 4.065321 TGGTCAAAATTTGGCACGAAAT 57.935 36.364 12.62 0.00 36.88 2.17
721 729 5.201713 TGGTCAAAATTTGGCACGAAATA 57.798 34.783 12.62 0.00 36.88 1.40
722 730 4.985409 TGGTCAAAATTTGGCACGAAATAC 59.015 37.500 12.62 0.00 36.88 1.89
723 731 4.985409 GGTCAAAATTTGGCACGAAATACA 59.015 37.500 12.62 0.00 36.88 2.29
724 732 5.463724 GGTCAAAATTTGGCACGAAATACAA 59.536 36.000 12.62 0.00 36.88 2.41
725 733 6.147000 GGTCAAAATTTGGCACGAAATACAAT 59.853 34.615 12.62 0.00 36.88 2.71
726 734 7.008859 GTCAAAATTTGGCACGAAATACAATG 58.991 34.615 5.33 0.00 34.79 2.82
727 735 6.146837 TCAAAATTTGGCACGAAATACAATGG 59.853 34.615 5.83 0.00 0.00 3.16
728 736 3.584406 TTTGGCACGAAATACAATGGG 57.416 42.857 0.00 0.00 0.00 4.00
729 737 1.468985 TGGCACGAAATACAATGGGG 58.531 50.000 0.00 0.00 0.00 4.96
730 738 1.004862 TGGCACGAAATACAATGGGGA 59.995 47.619 0.00 0.00 0.00 4.81
731 739 1.404035 GGCACGAAATACAATGGGGAC 59.596 52.381 0.00 0.00 0.00 4.46
746 754 1.081094 GGGACCAATAAACACGGACG 58.919 55.000 0.00 0.00 0.00 4.79
747 755 1.081094 GGACCAATAAACACGGACGG 58.919 55.000 0.00 0.00 0.00 4.79
748 756 1.338011 GGACCAATAAACACGGACGGA 60.338 52.381 0.00 0.00 0.00 4.69
749 757 1.997606 GACCAATAAACACGGACGGAG 59.002 52.381 0.00 0.00 0.00 4.63
750 758 1.338389 ACCAATAAACACGGACGGAGG 60.338 52.381 0.00 0.00 0.00 4.30
751 759 1.338389 CCAATAAACACGGACGGAGGT 60.338 52.381 0.00 0.00 0.00 3.85
752 760 2.094078 CCAATAAACACGGACGGAGGTA 60.094 50.000 0.00 0.00 0.00 3.08
753 761 3.184541 CAATAAACACGGACGGAGGTAG 58.815 50.000 0.00 0.00 0.00 3.18
754 762 1.909700 TAAACACGGACGGAGGTAGT 58.090 50.000 0.00 0.00 0.00 2.73
755 763 1.909700 AAACACGGACGGAGGTAGTA 58.090 50.000 0.00 0.00 0.00 1.82
756 764 1.168714 AACACGGACGGAGGTAGTAC 58.831 55.000 0.00 0.00 0.00 2.73
768 776 3.195182 GGAGGTAGTACCAAACAGAGTCC 59.805 52.174 21.49 12.36 41.95 3.85
816 824 4.014569 TGCTACCAAACAACTGCAGATA 57.985 40.909 23.35 0.00 0.00 1.98
851 859 3.845178 TGTCTGTACTTAACATGGCTCG 58.155 45.455 0.00 0.00 37.50 5.03
856 864 0.912487 ACTTAACATGGCTCGGGGGA 60.912 55.000 0.00 0.00 0.00 4.81
877 886 0.250234 ACACCGTGACAGGATGATGG 59.750 55.000 5.28 0.00 39.69 3.51
898 907 3.136626 GGAGGCTACCAAACACATCCTAT 59.863 47.826 0.00 0.00 0.00 2.57
899 908 4.385310 GGAGGCTACCAAACACATCCTATT 60.385 45.833 0.00 0.00 0.00 1.73
900 909 4.526970 AGGCTACCAAACACATCCTATTG 58.473 43.478 0.00 0.00 0.00 1.90
901 910 4.018415 AGGCTACCAAACACATCCTATTGT 60.018 41.667 0.00 0.00 0.00 2.71
902 911 5.190925 AGGCTACCAAACACATCCTATTGTA 59.809 40.000 0.00 0.00 0.00 2.41
903 912 5.296035 GGCTACCAAACACATCCTATTGTAC 59.704 44.000 0.00 0.00 0.00 2.90
904 913 5.296035 GCTACCAAACACATCCTATTGTACC 59.704 44.000 0.00 0.00 0.00 3.34
905 914 4.258543 ACCAAACACATCCTATTGTACCG 58.741 43.478 0.00 0.00 0.00 4.02
906 915 3.064820 CCAAACACATCCTATTGTACCGC 59.935 47.826 0.00 0.00 0.00 5.68
907 916 2.614829 ACACATCCTATTGTACCGCC 57.385 50.000 0.00 0.00 0.00 6.13
908 917 1.140252 ACACATCCTATTGTACCGCCC 59.860 52.381 0.00 0.00 0.00 6.13
909 918 1.140052 CACATCCTATTGTACCGCCCA 59.860 52.381 0.00 0.00 0.00 5.36
910 919 1.841277 ACATCCTATTGTACCGCCCAA 59.159 47.619 0.00 0.00 0.00 4.12
911 920 2.240160 ACATCCTATTGTACCGCCCAAA 59.760 45.455 0.00 0.00 0.00 3.28
912 921 3.283751 CATCCTATTGTACCGCCCAAAA 58.716 45.455 0.00 0.00 0.00 2.44
913 922 2.713877 TCCTATTGTACCGCCCAAAAC 58.286 47.619 0.00 0.00 0.00 2.43
914 923 1.399089 CCTATTGTACCGCCCAAAACG 59.601 52.381 0.00 0.00 0.00 3.60
922 931 2.356194 GCCCAAAACGGCTGCTTG 60.356 61.111 0.00 0.00 46.10 4.01
923 932 2.356194 CCCAAAACGGCTGCTTGC 60.356 61.111 0.00 0.00 41.94 4.01
924 933 2.730604 CCAAAACGGCTGCTTGCG 60.731 61.111 0.00 0.00 44.05 4.85
925 934 2.026014 CAAAACGGCTGCTTGCGT 59.974 55.556 0.00 0.00 44.05 5.24
926 935 2.026014 AAAACGGCTGCTTGCGTG 59.974 55.556 0.00 0.00 44.05 5.34
927 936 2.770589 AAAACGGCTGCTTGCGTGT 61.771 52.632 0.00 0.00 44.05 4.49
928 937 2.662091 AAAACGGCTGCTTGCGTGTC 62.662 55.000 0.00 0.00 44.05 3.67
933 942 4.081030 CTGCTTGCGTGTCGGCTG 62.081 66.667 0.00 0.00 0.00 4.85
934 943 4.908687 TGCTTGCGTGTCGGCTGT 62.909 61.111 0.00 0.00 0.00 4.40
935 944 4.077188 GCTTGCGTGTCGGCTGTC 62.077 66.667 0.00 0.00 0.00 3.51
936 945 3.767230 CTTGCGTGTCGGCTGTCG 61.767 66.667 0.00 0.00 40.90 4.35
941 950 4.980805 GTGTCGGCTGTCGGGCAA 62.981 66.667 0.30 0.00 40.90 4.52
942 951 4.015406 TGTCGGCTGTCGGGCAAT 62.015 61.111 0.30 0.00 40.90 3.56
943 952 2.185867 GTCGGCTGTCGGGCAATA 59.814 61.111 0.30 0.00 40.90 1.90
944 953 1.227556 GTCGGCTGTCGGGCAATAT 60.228 57.895 0.30 0.00 40.90 1.28
945 954 1.227527 TCGGCTGTCGGGCAATATG 60.228 57.895 0.30 0.00 40.90 1.78
946 955 2.896801 CGGCTGTCGGGCAATATGC 61.897 63.158 5.99 0.00 44.08 3.14
956 965 1.934463 GCAATATGCCTGGACGTCG 59.066 57.895 9.92 0.00 37.42 5.12
957 966 0.810031 GCAATATGCCTGGACGTCGT 60.810 55.000 9.92 0.00 37.42 4.34
958 967 1.651987 CAATATGCCTGGACGTCGTT 58.348 50.000 9.92 0.00 0.00 3.85
959 968 1.327460 CAATATGCCTGGACGTCGTTG 59.673 52.381 9.92 0.80 0.00 4.10
960 969 0.821517 ATATGCCTGGACGTCGTTGA 59.178 50.000 9.92 0.00 0.00 3.18
961 970 0.821517 TATGCCTGGACGTCGTTGAT 59.178 50.000 9.92 0.48 0.00 2.57
962 971 0.460284 ATGCCTGGACGTCGTTGATC 60.460 55.000 9.92 0.00 0.00 2.92
963 972 1.215647 GCCTGGACGTCGTTGATCT 59.784 57.895 9.92 0.00 0.00 2.75
964 973 0.454600 GCCTGGACGTCGTTGATCTA 59.545 55.000 9.92 0.00 0.00 1.98
965 974 1.067212 GCCTGGACGTCGTTGATCTAT 59.933 52.381 9.92 0.00 0.00 1.98
966 975 2.292569 GCCTGGACGTCGTTGATCTATA 59.707 50.000 9.92 0.00 0.00 1.31
967 976 3.243301 GCCTGGACGTCGTTGATCTATAA 60.243 47.826 9.92 0.00 0.00 0.98
968 977 4.735578 GCCTGGACGTCGTTGATCTATAAA 60.736 45.833 9.92 0.00 0.00 1.40
969 978 4.976731 CCTGGACGTCGTTGATCTATAAAG 59.023 45.833 9.92 0.00 0.00 1.85
970 979 4.357142 TGGACGTCGTTGATCTATAAAGC 58.643 43.478 9.92 0.00 0.00 3.51
971 980 4.097437 TGGACGTCGTTGATCTATAAAGCT 59.903 41.667 9.92 0.00 0.00 3.74
972 981 5.041940 GGACGTCGTTGATCTATAAAGCTT 58.958 41.667 9.92 0.00 0.00 3.74
973 982 5.519206 GGACGTCGTTGATCTATAAAGCTTT 59.481 40.000 17.30 17.30 0.00 3.51
974 983 6.332504 ACGTCGTTGATCTATAAAGCTTTG 57.667 37.500 22.02 5.30 0.00 2.77
975 984 5.191059 CGTCGTTGATCTATAAAGCTTTGC 58.809 41.667 22.02 4.80 0.00 3.68
976 985 5.005779 CGTCGTTGATCTATAAAGCTTTGCT 59.994 40.000 22.02 11.18 42.56 3.91
987 996 2.620251 AGCTTTGCTTTTCAAACCCC 57.380 45.000 0.00 0.00 39.58 4.95
988 997 1.140852 AGCTTTGCTTTTCAAACCCCC 59.859 47.619 0.00 0.00 39.58 5.40
1007 1016 3.852558 CCCCCTTATCTCCTCTCGT 57.147 57.895 0.00 0.00 0.00 4.18
1008 1017 1.623163 CCCCCTTATCTCCTCTCGTC 58.377 60.000 0.00 0.00 0.00 4.20
1009 1018 1.146152 CCCCCTTATCTCCTCTCGTCT 59.854 57.143 0.00 0.00 0.00 4.18
1010 1019 2.510613 CCCCTTATCTCCTCTCGTCTC 58.489 57.143 0.00 0.00 0.00 3.36
1011 1020 2.107552 CCCCTTATCTCCTCTCGTCTCT 59.892 54.545 0.00 0.00 0.00 3.10
1012 1021 3.408634 CCCTTATCTCCTCTCGTCTCTC 58.591 54.545 0.00 0.00 0.00 3.20
1013 1022 3.064207 CCTTATCTCCTCTCGTCTCTCG 58.936 54.545 0.00 0.00 41.41 4.04
1014 1023 3.493699 CCTTATCTCCTCTCGTCTCTCGT 60.494 52.174 0.00 0.00 40.80 4.18
1015 1024 2.234300 ATCTCCTCTCGTCTCTCGTC 57.766 55.000 0.00 0.00 40.80 4.20
1016 1025 1.187974 TCTCCTCTCGTCTCTCGTCT 58.812 55.000 0.00 0.00 40.80 4.18
1017 1026 1.135527 TCTCCTCTCGTCTCTCGTCTC 59.864 57.143 0.00 0.00 40.80 3.36
1018 1027 1.136305 CTCCTCTCGTCTCTCGTCTCT 59.864 57.143 0.00 0.00 40.80 3.10
1019 1028 1.135527 TCCTCTCGTCTCTCGTCTCTC 59.864 57.143 0.00 0.00 40.80 3.20
1020 1029 1.136305 CCTCTCGTCTCTCGTCTCTCT 59.864 57.143 0.00 0.00 40.80 3.10
1021 1030 2.460918 CTCTCGTCTCTCGTCTCTCTC 58.539 57.143 0.00 0.00 40.80 3.20
1022 1031 2.097036 TCTCGTCTCTCGTCTCTCTCT 58.903 52.381 0.00 0.00 40.80 3.10
1023 1032 3.281158 TCTCGTCTCTCGTCTCTCTCTA 58.719 50.000 0.00 0.00 40.80 2.43
1122 1132 0.772384 TCCTCCTCTCCCGTCTATCC 59.228 60.000 0.00 0.00 0.00 2.59
1125 1135 0.997307 TCCTCTCCCGTCTATCCCCA 60.997 60.000 0.00 0.00 0.00 4.96
1453 1466 0.384669 CCAGGTCGTCGGAAGGTATC 59.615 60.000 0.00 0.00 0.00 2.24
1456 1469 1.298938 GTCGTCGGAAGGTATCGCC 60.299 63.158 0.00 0.00 37.58 5.54
1497 1510 3.659786 TCATCTTGTTGTGTTAGACGGG 58.340 45.455 0.00 0.00 0.00 5.28
1562 1575 9.109393 GTTGTGTAGATTCTCCTGCATTTTATA 57.891 33.333 0.00 0.00 31.73 0.98
1563 1576 8.662781 TGTGTAGATTCTCCTGCATTTTATAC 57.337 34.615 0.00 0.00 31.73 1.47
1564 1577 7.715249 TGTGTAGATTCTCCTGCATTTTATACC 59.285 37.037 0.00 0.00 31.73 2.73
1565 1578 6.929049 TGTAGATTCTCCTGCATTTTATACCG 59.071 38.462 0.00 0.00 0.00 4.02
1566 1579 5.308825 AGATTCTCCTGCATTTTATACCGG 58.691 41.667 0.00 0.00 0.00 5.28
1567 1580 4.764050 TTCTCCTGCATTTTATACCGGA 57.236 40.909 9.46 0.00 0.00 5.14
1568 1581 4.336889 TCTCCTGCATTTTATACCGGAG 57.663 45.455 9.46 6.53 38.28 4.63
1569 1582 3.709653 TCTCCTGCATTTTATACCGGAGT 59.290 43.478 9.46 0.00 38.15 3.85
1570 1583 4.163458 TCTCCTGCATTTTATACCGGAGTT 59.837 41.667 9.46 0.00 38.15 3.01
1571 1584 4.850680 TCCTGCATTTTATACCGGAGTTT 58.149 39.130 9.46 0.00 0.00 2.66
1767 1780 2.225242 ACAACCATTTGGGGATACTGCA 60.225 45.455 0.96 0.00 42.91 4.41
1951 1964 1.000233 CCATGCCCCCTAACAGCAA 60.000 57.895 0.00 0.00 40.46 3.91
1958 1971 0.883833 CCCCTAACAGCAAGCAACAG 59.116 55.000 0.00 0.00 0.00 3.16
1963 1976 3.254166 CCTAACAGCAAGCAACAGTCAAT 59.746 43.478 0.00 0.00 0.00 2.57
1981 1994 0.037590 ATACCCAAAAGCAGCACCGA 59.962 50.000 0.00 0.00 0.00 4.69
1982 1995 0.179015 TACCCAAAAGCAGCACCGAA 60.179 50.000 0.00 0.00 0.00 4.30
1986 1999 2.482864 CCAAAAGCAGCACCGAAATTT 58.517 42.857 0.00 0.00 0.00 1.82
1999 2012 6.823689 AGCACCGAAATTTAATCAGAGTACAT 59.176 34.615 0.00 0.00 0.00 2.29
2019 2032 8.781196 AGTACATCATCATGCAGCTAATAAAAG 58.219 33.333 0.00 0.00 32.57 2.27
2119 2132 3.012274 AGATGAAGAGGTTGAGGAGAGGA 59.988 47.826 0.00 0.00 0.00 3.71
2140 2153 4.938756 TGGGCCTGGGGAGTTGGT 62.939 66.667 4.53 0.00 0.00 3.67
2332 2345 1.451387 CGGGCCGAGGCTGTTATTT 60.451 57.895 24.41 0.00 41.60 1.40
2355 2372 1.456892 TCCCGACCAGCGTATCCAT 60.457 57.895 0.00 0.00 38.67 3.41
2377 2394 1.286305 ACCCCAACCAGTGTCCTTGT 61.286 55.000 0.00 0.00 0.00 3.16
2406 2423 8.533569 TTTTAATTCATAAATGAGGGGAGGTC 57.466 34.615 0.00 0.00 38.19 3.85
2411 2428 5.726560 TCATAAATGAGGGGAGGTCTATGA 58.273 41.667 0.00 0.00 32.11 2.15
2413 2430 7.487338 TCATAAATGAGGGGAGGTCTATGATA 58.513 38.462 0.00 0.00 32.11 2.15
2844 2863 2.239402 GACGGGGGTAAATGGGAAGTTA 59.761 50.000 0.00 0.00 0.00 2.24
2983 3005 2.912020 GGTGGTACCTCGGAAGGAT 58.088 57.895 14.36 0.00 46.67 3.24
3339 3495 2.143122 GAAGCTTGTCCAACATCGTCA 58.857 47.619 2.10 0.00 0.00 4.35
3380 3536 2.354343 GCAGGCCTCCAGAAGCTT 59.646 61.111 0.00 0.00 0.00 3.74
3533 3689 2.555547 GGTGCGTGGAAGCTTGCTT 61.556 57.895 19.34 7.65 38.13 3.91
3629 3786 5.416083 GGACTAAAGGCTTTGTTGTTGTTT 58.584 37.500 22.32 0.00 0.00 2.83
3646 3803 7.534085 TGTTGTTTGTTGTTGTTGTTTGTAA 57.466 28.000 0.00 0.00 0.00 2.41
3655 3812 4.956700 TGTTGTTGTTTGTAAATGAGGGGA 59.043 37.500 0.00 0.00 0.00 4.81
3678 3835 1.698532 CTGCTGATCCCTGCTTATCCT 59.301 52.381 0.00 0.00 37.99 3.24
3731 3888 2.620251 CCAATCGGCTGAATCTACCA 57.380 50.000 0.00 0.00 0.00 3.25
3798 3955 0.394352 CTATTTTCTGCTGGGCGGGT 60.394 55.000 0.00 0.00 35.34 5.28
4132 4289 6.398095 TCATTCTAATCTATGTACCATGGCG 58.602 40.000 13.04 0.00 0.00 5.69
4483 4680 3.096092 TGTGGTTTGTTGCCTTCTCTTT 58.904 40.909 0.00 0.00 0.00 2.52
4499 4696 6.978080 CCTTCTCTTTTGAGCTCAGTATAGTC 59.022 42.308 17.43 0.00 45.83 2.59
4549 4746 6.200475 GTCTACTTGAACTTAACACTGGTCAC 59.800 42.308 0.00 0.00 0.00 3.67
4556 4753 3.646162 ACTTAACACTGGTCACTGATCCA 59.354 43.478 0.00 0.00 0.00 3.41
4607 4805 1.410517 TCAGATCTGGAGCCGATGTTC 59.589 52.381 22.42 0.00 0.00 3.18
4612 4810 1.278985 TCTGGAGCCGATGTTCAACAT 59.721 47.619 1.52 1.52 42.43 2.71
4613 4811 1.399440 CTGGAGCCGATGTTCAACATG 59.601 52.381 8.05 0.41 39.27 3.21
4708 4906 4.820716 ACATGAGCATCCTTTATCTGCTTC 59.179 41.667 0.00 0.00 45.79 3.86
4719 4921 8.027524 TCCTTTATCTGCTTCTATGATGTCTT 57.972 34.615 0.00 0.00 0.00 3.01
4761 4963 6.619801 ATGAATACGATTGTTCTTAAGGGC 57.380 37.500 1.85 0.00 0.00 5.19
4764 4966 2.618053 ACGATTGTTCTTAAGGGCGAG 58.382 47.619 1.85 0.00 0.00 5.03
4775 4977 4.718276 TCTTAAGGGCGAGGTAAAATAGGT 59.282 41.667 1.85 0.00 0.00 3.08
4909 5359 4.041464 TGCATTATGGGTTACTACCTCCA 58.959 43.478 0.00 0.00 44.38 3.86
4931 5381 2.725227 TCCTGGTTTATTGGTCCCCTTT 59.275 45.455 0.00 0.00 0.00 3.11
4932 5382 2.831526 CCTGGTTTATTGGTCCCCTTTG 59.168 50.000 0.00 0.00 0.00 2.77
4933 5383 3.506398 CTGGTTTATTGGTCCCCTTTGT 58.494 45.455 0.00 0.00 0.00 2.83
4978 5428 7.927629 ACCGTAGATTTAACTAACAAAGTGTCA 59.072 33.333 0.00 0.00 38.88 3.58
4991 5441 6.330004 ACAAAGTGTCAATGCATGTCATAA 57.670 33.333 0.00 0.00 34.33 1.90
5128 5579 1.279846 GGGACCAATAAACCAGGACGA 59.720 52.381 0.00 0.00 0.00 4.20
5129 5580 2.629051 GGACCAATAAACCAGGACGAG 58.371 52.381 0.00 0.00 0.00 4.18
5196 5647 6.002062 CCTGTTCATTTTTCAGGTACACTC 57.998 41.667 0.00 0.00 42.42 3.51
5197 5648 5.530915 CCTGTTCATTTTTCAGGTACACTCA 59.469 40.000 0.00 0.00 42.42 3.41
5198 5649 6.207417 CCTGTTCATTTTTCAGGTACACTCAT 59.793 38.462 0.00 0.00 42.42 2.90
5199 5650 6.969366 TGTTCATTTTTCAGGTACACTCATG 58.031 36.000 0.00 0.00 0.00 3.07
5200 5651 6.016360 TGTTCATTTTTCAGGTACACTCATGG 60.016 38.462 0.00 0.00 0.00 3.66
5201 5652 5.630121 TCATTTTTCAGGTACACTCATGGT 58.370 37.500 0.00 0.00 0.00 3.55
5202 5653 6.068010 TCATTTTTCAGGTACACTCATGGTT 58.932 36.000 0.00 0.00 0.00 3.67
5203 5654 6.549364 TCATTTTTCAGGTACACTCATGGTTT 59.451 34.615 0.00 0.00 0.00 3.27
5204 5655 6.783708 TTTTTCAGGTACACTCATGGTTTT 57.216 33.333 0.00 0.00 0.00 2.43
5205 5656 6.385649 TTTTCAGGTACACTCATGGTTTTC 57.614 37.500 0.00 0.00 0.00 2.29
5206 5657 3.659786 TCAGGTACACTCATGGTTTTCG 58.340 45.455 0.00 0.00 0.00 3.46
5207 5658 3.322541 TCAGGTACACTCATGGTTTTCGA 59.677 43.478 0.00 0.00 0.00 3.71
5208 5659 3.679980 CAGGTACACTCATGGTTTTCGAG 59.320 47.826 0.00 0.00 0.00 4.04
5209 5660 3.323979 AGGTACACTCATGGTTTTCGAGT 59.676 43.478 0.00 0.00 40.60 4.18
5210 5661 3.678548 GGTACACTCATGGTTTTCGAGTC 59.321 47.826 0.00 0.00 37.92 3.36
5211 5662 2.404215 ACACTCATGGTTTTCGAGTCG 58.596 47.619 6.09 6.09 37.92 4.18
5212 5663 1.126846 CACTCATGGTTTTCGAGTCGC 59.873 52.381 7.92 0.00 37.92 5.19
5213 5664 0.366871 CTCATGGTTTTCGAGTCGCG 59.633 55.000 7.92 0.00 42.69 5.87
5224 5675 3.102985 AGTCGCGACTCATCCGAG 58.897 61.111 34.98 0.00 45.49 4.63
5233 5684 1.358402 CTCATCCGAGTCGCTCTGG 59.642 63.158 7.12 7.84 34.29 3.86
5234 5685 2.069465 CTCATCCGAGTCGCTCTGGG 62.069 65.000 7.12 0.00 42.35 4.45
5235 5686 2.835431 ATCCGAGTCGCTCTGGGG 60.835 66.667 7.12 0.00 41.50 4.96
5236 5687 3.663815 ATCCGAGTCGCTCTGGGGT 62.664 63.158 7.12 4.14 41.50 4.95
5237 5688 2.280404 ATCCGAGTCGCTCTGGGGTA 62.280 60.000 7.12 0.00 41.50 3.69
5238 5689 2.482333 CCGAGTCGCTCTGGGGTAG 61.482 68.421 7.12 0.00 38.21 3.18
5239 5690 2.809010 GAGTCGCTCTGGGGTAGC 59.191 66.667 0.37 0.00 36.60 3.58
5244 5695 2.809010 GCTCTGGGGTAGCGACTC 59.191 66.667 0.00 0.00 0.00 3.36
5245 5696 3.111939 CTCTGGGGTAGCGACTCG 58.888 66.667 0.00 0.00 0.00 4.18
5246 5697 2.439701 TCTGGGGTAGCGACTCGG 60.440 66.667 0.00 0.00 0.00 4.63
5247 5698 2.439701 CTGGGGTAGCGACTCGGA 60.440 66.667 0.00 0.00 0.00 4.55
5248 5699 2.036098 TGGGGTAGCGACTCGGAA 59.964 61.111 0.00 0.00 0.00 4.30
5249 5700 1.601419 CTGGGGTAGCGACTCGGAAA 61.601 60.000 0.00 0.00 0.00 3.13
5250 5701 1.186917 TGGGGTAGCGACTCGGAAAA 61.187 55.000 0.00 0.00 0.00 2.29
5251 5702 0.037046 GGGGTAGCGACTCGGAAAAA 60.037 55.000 0.00 0.00 0.00 1.94
5252 5703 1.356938 GGGTAGCGACTCGGAAAAAG 58.643 55.000 0.00 0.00 0.00 2.27
5253 5704 1.337541 GGGTAGCGACTCGGAAAAAGT 60.338 52.381 0.00 0.00 0.00 2.66
5254 5705 1.991264 GGTAGCGACTCGGAAAAAGTC 59.009 52.381 0.00 0.00 39.82 3.01
5260 5711 3.516578 CTCGGAAAAAGTCGAGCCT 57.483 52.632 0.00 0.00 44.68 4.58
5261 5712 1.071605 CTCGGAAAAAGTCGAGCCTG 58.928 55.000 0.00 0.00 44.68 4.85
5262 5713 0.949105 TCGGAAAAAGTCGAGCCTGC 60.949 55.000 0.00 0.00 0.00 4.85
5263 5714 1.227999 CGGAAAAAGTCGAGCCTGCA 61.228 55.000 0.00 0.00 0.00 4.41
5264 5715 0.519077 GGAAAAAGTCGAGCCTGCAG 59.481 55.000 6.78 6.78 0.00 4.41
5265 5716 1.230324 GAAAAAGTCGAGCCTGCAGT 58.770 50.000 13.81 0.00 0.00 4.40
5266 5717 1.604278 GAAAAAGTCGAGCCTGCAGTT 59.396 47.619 13.81 0.00 0.00 3.16
5267 5718 0.947244 AAAAGTCGAGCCTGCAGTTG 59.053 50.000 13.81 0.00 0.00 3.16
5268 5719 1.510480 AAAGTCGAGCCTGCAGTTGC 61.510 55.000 13.81 10.03 42.50 4.17
5269 5720 3.782244 GTCGAGCCTGCAGTTGCG 61.782 66.667 13.81 12.51 45.83 4.85
5270 5721 3.989787 TCGAGCCTGCAGTTGCGA 61.990 61.111 13.81 14.63 45.83 5.10
5271 5722 3.782244 CGAGCCTGCAGTTGCGAC 61.782 66.667 13.81 8.67 45.83 5.19
5272 5723 2.358003 GAGCCTGCAGTTGCGACT 60.358 61.111 13.81 0.00 45.83 4.18
5273 5724 1.079819 GAGCCTGCAGTTGCGACTA 60.080 57.895 13.81 0.00 45.83 2.59
5274 5725 1.079543 AGCCTGCAGTTGCGACTAG 60.080 57.895 13.81 1.26 45.83 2.57
5275 5726 1.374758 GCCTGCAGTTGCGACTAGT 60.375 57.895 13.81 0.00 45.83 2.57
5276 5727 1.355066 GCCTGCAGTTGCGACTAGTC 61.355 60.000 13.81 13.18 45.83 2.59
5295 5746 4.517703 CGACCCGCGACTCGAGTC 62.518 72.222 31.46 31.46 44.57 3.36
5321 5772 2.376915 TTTTTGCGACACACATCGAC 57.623 45.000 0.00 0.00 45.13 4.20
5322 5773 1.577468 TTTTGCGACACACATCGACT 58.423 45.000 0.00 0.00 45.13 4.18
5323 5774 2.425578 TTTGCGACACACATCGACTA 57.574 45.000 0.00 0.00 45.13 2.59
5324 5775 2.425578 TTGCGACACACATCGACTAA 57.574 45.000 0.00 0.00 45.13 2.24
5325 5776 2.647529 TGCGACACACATCGACTAAT 57.352 45.000 0.00 0.00 45.13 1.73
5326 5777 2.526077 TGCGACACACATCGACTAATC 58.474 47.619 0.00 0.00 45.13 1.75
5335 5786 3.500968 CGACTAATCGCGCGACTC 58.499 61.111 37.37 23.84 42.43 3.36
5336 5787 2.340595 CGACTAATCGCGCGACTCG 61.341 63.158 37.37 30.26 42.43 4.18
5337 5788 1.011463 GACTAATCGCGCGACTCGA 60.011 57.895 37.37 18.92 41.67 4.04
5338 5789 0.588233 GACTAATCGCGCGACTCGAA 60.588 55.000 37.37 17.18 41.67 3.71
5339 5790 0.179181 ACTAATCGCGCGACTCGAAA 60.179 50.000 37.37 11.87 41.67 3.46
5340 5791 0.911856 CTAATCGCGCGACTCGAAAA 59.088 50.000 37.37 10.95 41.67 2.29
5341 5792 0.636733 TAATCGCGCGACTCGAAAAC 59.363 50.000 37.37 0.00 41.67 2.43
5342 5793 1.952266 AATCGCGCGACTCGAAAACC 61.952 55.000 37.37 0.00 41.67 3.27
5343 5794 3.399770 CGCGCGACTCGAAAACCA 61.400 61.111 28.94 0.00 41.67 3.67
5344 5795 2.726691 CGCGCGACTCGAAAACCAT 61.727 57.895 28.94 0.00 41.67 3.55
5345 5796 1.225745 GCGCGACTCGAAAACCATG 60.226 57.895 12.10 0.00 41.67 3.66
5438 5890 5.598005 TGACAGGAATTGGTGAACAAATCTT 59.402 36.000 0.00 0.00 43.46 2.40
5521 5973 9.678260 GCTGTTCCTTATGATCCTAAATATCAT 57.322 33.333 0.00 0.00 44.33 2.45
5725 6177 3.402681 ATGCCTCCACCTCCACCG 61.403 66.667 0.00 0.00 0.00 4.94
5827 6324 2.046314 GCAGCATACACACCGGGT 60.046 61.111 6.32 0.00 0.00 5.28
5844 6341 3.965258 TGGTGCACCCCGAATGCT 61.965 61.111 32.62 0.00 43.77 3.79
5974 6471 1.282157 GTCCCCAGTGGTGCTTCTAAT 59.718 52.381 8.74 0.00 34.77 1.73
6043 6540 5.755849 CATCAGGGAGGTAACCAAGTTTAT 58.244 41.667 0.00 0.00 37.17 1.40
6194 6691 3.244561 TGGCTATAATCAGCAGTAAGGCC 60.245 47.826 0.00 0.00 43.67 5.19
6220 6717 1.270094 TGAGGCAACGTGAACTACCAG 60.270 52.381 0.00 0.00 46.39 4.00
6291 6788 4.153117 GCCAGCATAATTCCGTAGAAGATG 59.847 45.833 0.00 0.00 34.86 2.90
6360 6858 8.529424 TTATCGATTCTCCTTCAAGTAACCTA 57.471 34.615 1.71 0.00 0.00 3.08
6533 7193 2.588146 CTATGCTGCTGTTGCACGCC 62.588 60.000 0.00 0.00 45.31 5.68
6580 7240 7.414540 GCTTAATGACAAGATGGTTAAGGAGTG 60.415 40.741 0.00 0.00 34.54 3.51
6673 7335 3.805207 ACACTGAAGAAAGTAAAGCCGT 58.195 40.909 0.00 0.00 0.00 5.68
6675 7337 4.638865 ACACTGAAGAAAGTAAAGCCGTTT 59.361 37.500 0.00 0.00 0.00 3.60
6690 7352 2.344741 GCCGTTTATAGCACGCTATAGC 59.655 50.000 15.09 15.09 41.02 2.97
6707 7369 6.210078 GCTATAGCGTGTAGAGAATTGTCTT 58.790 40.000 10.78 0.00 32.80 3.01
6710 7372 2.094417 GCGTGTAGAGAATTGTCTTGCC 59.906 50.000 10.78 0.61 32.80 4.52
6717 7379 7.965107 GTGTAGAGAATTGTCTTGCCAAATAAG 59.035 37.037 10.78 0.00 32.80 1.73
6761 7449 1.378124 GCGTATTTTTAGGGGCGGCA 61.378 55.000 12.47 0.00 0.00 5.69
6769 7457 2.517998 TTAGGGGCGGCACTATTTTT 57.482 45.000 22.87 0.00 0.00 1.94
6770 7458 3.648507 TTAGGGGCGGCACTATTTTTA 57.351 42.857 22.87 3.29 0.00 1.52
6898 7601 8.702163 ACTTGGTGAAACTTAAAATGTTTGAG 57.298 30.769 0.00 0.00 37.70 3.02
6942 7647 3.344515 AGTATTTTGGAACGGAAGGAGC 58.655 45.455 0.00 0.00 0.00 4.70
6951 7656 1.813513 ACGGAAGGAGCAGTGATTTG 58.186 50.000 0.00 0.00 0.00 2.32
6984 7689 9.945904 TGTTAAAAACTAAAAAGGTTTGGTGAT 57.054 25.926 0.00 0.00 38.34 3.06
6988 7693 9.508642 AAAAACTAAAAAGGTTTGGTGATTTGA 57.491 25.926 0.00 0.00 38.34 2.69
6990 7695 7.418337 ACTAAAAAGGTTTGGTGATTTGAGT 57.582 32.000 0.00 0.00 37.09 3.41
7002 7716 7.905604 TGGTGATTTGAGTGTAGAATTACAG 57.094 36.000 0.00 0.00 40.33 2.74
7139 7853 1.116308 AAAAGGTTTTGGTGACCCCG 58.884 50.000 0.00 0.00 37.93 5.73
7201 7915 8.083828 AGATAGATCACACTGAACCAAATACT 57.916 34.615 0.00 0.00 0.00 2.12
7202 7916 8.200792 AGATAGATCACACTGAACCAAATACTC 58.799 37.037 0.00 0.00 0.00 2.59
7220 7934 4.415783 CCCCCGACTGGAAAAAGG 57.584 61.111 0.00 0.00 37.49 3.11
7221 7935 1.977009 CCCCCGACTGGAAAAAGGC 60.977 63.158 0.00 0.00 37.49 4.35
7222 7936 1.074951 CCCCGACTGGAAAAAGGCT 59.925 57.895 0.00 0.00 37.49 4.58
7223 7937 1.244019 CCCCGACTGGAAAAAGGCTG 61.244 60.000 0.00 0.00 37.49 4.85
7224 7938 1.244019 CCCGACTGGAAAAAGGCTGG 61.244 60.000 0.00 0.00 37.49 4.85
7225 7939 1.244019 CCGACTGGAAAAAGGCTGGG 61.244 60.000 0.00 0.00 37.49 4.45
7226 7940 1.244019 CGACTGGAAAAAGGCTGGGG 61.244 60.000 0.00 0.00 0.00 4.96
7227 7941 0.900182 GACTGGAAAAAGGCTGGGGG 60.900 60.000 0.00 0.00 0.00 5.40
7228 7942 2.203773 TGGAAAAAGGCTGGGGGC 60.204 61.111 0.00 0.00 40.90 5.80
7229 7943 3.381983 GGAAAAAGGCTGGGGGCG 61.382 66.667 0.00 0.00 42.94 6.13
7230 7944 2.282887 GAAAAAGGCTGGGGGCGA 60.283 61.111 0.00 0.00 42.94 5.54
7231 7945 2.600470 AAAAAGGCTGGGGGCGAC 60.600 61.111 0.00 0.00 42.94 5.19
7249 7963 4.357947 GCTCTGTGCCGGTCGTCA 62.358 66.667 1.90 0.00 35.15 4.35
7250 7964 2.338620 CTCTGTGCCGGTCGTCAA 59.661 61.111 1.90 0.00 0.00 3.18
7251 7965 1.300620 CTCTGTGCCGGTCGTCAAA 60.301 57.895 1.90 0.00 0.00 2.69
7252 7966 1.557443 CTCTGTGCCGGTCGTCAAAC 61.557 60.000 1.90 0.00 0.00 2.93
7253 7967 2.589442 TGTGCCGGTCGTCAAACC 60.589 61.111 1.90 0.00 35.86 3.27
7254 7968 2.589442 GTGCCGGTCGTCAAACCA 60.589 61.111 1.90 0.00 39.43 3.67
7255 7969 2.589442 TGCCGGTCGTCAAACCAC 60.589 61.111 1.90 0.00 39.43 4.16
7256 7970 2.589442 GCCGGTCGTCAAACCACA 60.589 61.111 1.90 0.00 39.43 4.17
7257 7971 2.888998 GCCGGTCGTCAAACCACAC 61.889 63.158 1.90 0.00 39.43 3.82
7258 7972 2.591311 CCGGTCGTCAAACCACACG 61.591 63.158 0.00 0.00 39.43 4.49
7259 7973 1.879430 CGGTCGTCAAACCACACGT 60.879 57.895 0.00 0.00 39.43 4.49
7260 7974 0.594540 CGGTCGTCAAACCACACGTA 60.595 55.000 0.00 0.00 39.43 3.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
394 401 5.126222 TGTGTGCACAATTCAAAGGAGTTTA 59.874 36.000 23.59 0.00 38.56 2.01
446 453 6.015519 GCTGTATCTGAGATGGTGAAGATACT 60.016 42.308 17.76 0.00 46.10 2.12
452 459 3.378512 AGGCTGTATCTGAGATGGTGAA 58.621 45.455 4.96 0.00 0.00 3.18
478 485 2.436417 GTGCTGGGCTCAGAATTTGTA 58.564 47.619 20.53 0.00 43.49 2.41
484 491 2.343758 GACGTGCTGGGCTCAGAA 59.656 61.111 20.53 2.69 43.49 3.02
520 528 3.052642 ACCTATAAACCAGGACGGAGGTA 60.053 47.826 0.00 0.00 35.66 3.08
521 529 2.292719 ACCTATAAACCAGGACGGAGGT 60.293 50.000 0.00 0.00 40.61 3.85
522 530 2.364647 GACCTATAAACCAGGACGGAGG 59.635 54.545 0.00 0.00 38.63 4.30
523 531 2.364647 GGACCTATAAACCAGGACGGAG 59.635 54.545 0.00 0.00 38.63 4.63
524 532 2.391678 GGACCTATAAACCAGGACGGA 58.608 52.381 0.00 0.00 38.63 4.69
525 533 1.415289 GGGACCTATAAACCAGGACGG 59.585 57.143 0.00 0.00 42.50 4.79
526 534 2.904697 GGGACCTATAAACCAGGACG 57.095 55.000 0.00 0.00 36.61 4.79
541 549 3.547746 TGACACAAACTACAAAGGGGAC 58.452 45.455 0.00 0.00 0.00 4.46
542 550 3.935818 TGACACAAACTACAAAGGGGA 57.064 42.857 0.00 0.00 0.00 4.81
543 551 4.993029 TTTGACACAAACTACAAAGGGG 57.007 40.909 0.00 0.00 0.00 4.79
544 552 7.547370 TCAAAATTTGACACAAACTACAAAGGG 59.453 33.333 4.03 0.00 36.07 3.95
545 553 8.472683 TCAAAATTTGACACAAACTACAAAGG 57.527 30.769 4.03 0.00 36.07 3.11
581 589 9.539825 TTGACATGCATTAACATTTTGTTAGTT 57.460 25.926 0.00 0.00 42.93 2.24
582 590 9.195411 CTTGACATGCATTAACATTTTGTTAGT 57.805 29.630 0.00 0.00 42.93 2.24
583 591 9.409312 TCTTGACATGCATTAACATTTTGTTAG 57.591 29.630 0.00 0.00 42.93 2.34
584 592 9.755804 TTCTTGACATGCATTAACATTTTGTTA 57.244 25.926 0.00 0.00 41.45 2.41
585 593 8.659925 TTCTTGACATGCATTAACATTTTGTT 57.340 26.923 0.00 0.00 43.88 2.83
586 594 8.659925 TTTCTTGACATGCATTAACATTTTGT 57.340 26.923 0.00 0.00 0.00 2.83
587 595 9.932699 TTTTTCTTGACATGCATTAACATTTTG 57.067 25.926 0.00 0.00 0.00 2.44
598 606 9.361315 CAATGAGATAATTTTTCTTGACATGCA 57.639 29.630 0.00 0.00 0.00 3.96
599 607 8.814235 CCAATGAGATAATTTTTCTTGACATGC 58.186 33.333 0.00 0.00 0.00 4.06
605 613 9.793252 ACGAATCCAATGAGATAATTTTTCTTG 57.207 29.630 0.00 0.00 0.00 3.02
614 622 8.547894 CGTTCAAATACGAATCCAATGAGATAA 58.452 33.333 0.00 0.00 43.99 1.75
615 623 7.709182 ACGTTCAAATACGAATCCAATGAGATA 59.291 33.333 2.93 0.00 43.99 1.98
616 624 6.538742 ACGTTCAAATACGAATCCAATGAGAT 59.461 34.615 2.93 0.00 43.99 2.75
617 625 5.872617 ACGTTCAAATACGAATCCAATGAGA 59.127 36.000 2.93 0.00 43.99 3.27
618 626 6.106877 ACGTTCAAATACGAATCCAATGAG 57.893 37.500 2.93 0.00 43.99 2.90
619 627 6.814644 ACTACGTTCAAATACGAATCCAATGA 59.185 34.615 0.00 0.00 43.99 2.57
620 628 7.000575 ACTACGTTCAAATACGAATCCAATG 57.999 36.000 0.00 0.00 43.99 2.82
621 629 7.605410 AACTACGTTCAAATACGAATCCAAT 57.395 32.000 0.00 0.00 43.99 3.16
622 630 7.424227 AAACTACGTTCAAATACGAATCCAA 57.576 32.000 0.00 0.00 43.99 3.53
623 631 7.424227 AAAACTACGTTCAAATACGAATCCA 57.576 32.000 0.00 0.00 43.99 3.41
624 632 9.810231 TTAAAAACTACGTTCAAATACGAATCC 57.190 29.630 0.00 0.00 43.99 3.01
649 657 8.542132 GCGCATGTCATCAAACATTATATTTTT 58.458 29.630 0.30 0.00 37.78 1.94
650 658 7.096518 CGCGCATGTCATCAAACATTATATTTT 60.097 33.333 8.75 0.00 37.78 1.82
651 659 6.360414 CGCGCATGTCATCAAACATTATATTT 59.640 34.615 8.75 0.00 37.78 1.40
652 660 5.852755 CGCGCATGTCATCAAACATTATATT 59.147 36.000 8.75 0.00 37.78 1.28
653 661 5.179182 TCGCGCATGTCATCAAACATTATAT 59.821 36.000 8.75 0.00 37.78 0.86
654 662 4.509600 TCGCGCATGTCATCAAACATTATA 59.490 37.500 8.75 0.00 37.78 0.98
655 663 3.312146 TCGCGCATGTCATCAAACATTAT 59.688 39.130 8.75 0.00 37.78 1.28
656 664 2.675348 TCGCGCATGTCATCAAACATTA 59.325 40.909 8.75 0.00 37.78 1.90
657 665 1.468127 TCGCGCATGTCATCAAACATT 59.532 42.857 8.75 0.00 37.78 2.71
658 666 1.085893 TCGCGCATGTCATCAAACAT 58.914 45.000 8.75 0.00 40.49 2.71
659 667 0.871057 TTCGCGCATGTCATCAAACA 59.129 45.000 8.75 0.00 0.00 2.83
660 668 1.250476 GTTCGCGCATGTCATCAAAC 58.750 50.000 8.75 0.00 0.00 2.93
661 669 0.871057 TGTTCGCGCATGTCATCAAA 59.129 45.000 8.75 0.00 0.00 2.69
662 670 1.085893 ATGTTCGCGCATGTCATCAA 58.914 45.000 8.75 0.00 0.00 2.57
663 671 1.085893 AATGTTCGCGCATGTCATCA 58.914 45.000 8.75 0.00 0.00 3.07
664 672 2.178474 AAATGTTCGCGCATGTCATC 57.822 45.000 8.75 0.00 0.00 2.92
665 673 2.252747 CAAAATGTTCGCGCATGTCAT 58.747 42.857 8.75 3.28 0.00 3.06
666 674 1.001924 ACAAAATGTTCGCGCATGTCA 60.002 42.857 8.75 0.60 0.00 3.58
667 675 1.685302 ACAAAATGTTCGCGCATGTC 58.315 45.000 8.75 0.00 0.00 3.06
668 676 2.132740 AACAAAATGTTCGCGCATGT 57.867 40.000 8.75 0.00 35.27 3.21
669 677 3.233578 ACTAACAAAATGTTCGCGCATG 58.766 40.909 8.75 0.00 40.22 4.06
670 678 3.552604 ACTAACAAAATGTTCGCGCAT 57.447 38.095 8.75 0.00 40.22 4.73
671 679 3.341857 AACTAACAAAATGTTCGCGCA 57.658 38.095 8.75 0.00 40.22 6.09
672 680 5.793023 TTAAACTAACAAAATGTTCGCGC 57.207 34.783 0.00 0.00 40.22 6.86
673 681 7.775729 AGATTAAACTAACAAAATGTTCGCG 57.224 32.000 0.00 0.00 40.22 5.87
688 696 8.592809 TGCCAAATTTTGACCATAGATTAAACT 58.407 29.630 10.72 0.00 0.00 2.66
689 697 8.655970 GTGCCAAATTTTGACCATAGATTAAAC 58.344 33.333 10.72 0.00 0.00 2.01
690 698 7.543868 CGTGCCAAATTTTGACCATAGATTAAA 59.456 33.333 10.72 0.00 0.00 1.52
691 699 7.032580 CGTGCCAAATTTTGACCATAGATTAA 58.967 34.615 10.72 0.00 0.00 1.40
692 700 6.375736 TCGTGCCAAATTTTGACCATAGATTA 59.624 34.615 10.72 0.00 0.00 1.75
693 701 5.184864 TCGTGCCAAATTTTGACCATAGATT 59.815 36.000 10.72 0.00 0.00 2.40
694 702 4.704540 TCGTGCCAAATTTTGACCATAGAT 59.295 37.500 10.72 0.00 0.00 1.98
695 703 4.075682 TCGTGCCAAATTTTGACCATAGA 58.924 39.130 10.72 8.13 0.00 1.98
696 704 4.433186 TCGTGCCAAATTTTGACCATAG 57.567 40.909 10.72 6.37 0.00 2.23
697 705 4.855715 TTCGTGCCAAATTTTGACCATA 57.144 36.364 10.72 0.00 0.00 2.74
698 706 3.742433 TTCGTGCCAAATTTTGACCAT 57.258 38.095 10.72 0.00 0.00 3.55
699 707 3.526931 TTTCGTGCCAAATTTTGACCA 57.473 38.095 10.72 4.80 0.00 4.02
700 708 4.985409 TGTATTTCGTGCCAAATTTTGACC 59.015 37.500 10.72 2.35 0.00 4.02
701 709 6.517914 TTGTATTTCGTGCCAAATTTTGAC 57.482 33.333 10.72 0.00 0.00 3.18
702 710 6.146837 CCATTGTATTTCGTGCCAAATTTTGA 59.853 34.615 10.72 0.00 0.00 2.69
703 711 6.305639 CCATTGTATTTCGTGCCAAATTTTG 58.694 36.000 1.99 1.99 0.00 2.44
704 712 5.411053 CCCATTGTATTTCGTGCCAAATTTT 59.589 36.000 0.00 0.00 0.00 1.82
705 713 4.934602 CCCATTGTATTTCGTGCCAAATTT 59.065 37.500 0.00 0.00 0.00 1.82
706 714 4.502962 CCCATTGTATTTCGTGCCAAATT 58.497 39.130 0.00 0.00 0.00 1.82
707 715 3.118811 CCCCATTGTATTTCGTGCCAAAT 60.119 43.478 0.00 0.00 0.00 2.32
708 716 2.232452 CCCCATTGTATTTCGTGCCAAA 59.768 45.455 0.00 0.00 0.00 3.28
709 717 1.821753 CCCCATTGTATTTCGTGCCAA 59.178 47.619 0.00 0.00 0.00 4.52
710 718 1.004862 TCCCCATTGTATTTCGTGCCA 59.995 47.619 0.00 0.00 0.00 4.92
711 719 1.404035 GTCCCCATTGTATTTCGTGCC 59.596 52.381 0.00 0.00 0.00 5.01
712 720 1.404035 GGTCCCCATTGTATTTCGTGC 59.596 52.381 0.00 0.00 0.00 5.34
713 721 2.717390 TGGTCCCCATTGTATTTCGTG 58.283 47.619 0.00 0.00 0.00 4.35
714 722 3.443145 TTGGTCCCCATTGTATTTCGT 57.557 42.857 0.00 0.00 31.53 3.85
715 723 6.127591 TGTTTATTGGTCCCCATTGTATTTCG 60.128 38.462 0.00 0.00 31.53 3.46
716 724 7.039270 GTGTTTATTGGTCCCCATTGTATTTC 58.961 38.462 0.00 0.00 31.53 2.17
717 725 6.350612 CGTGTTTATTGGTCCCCATTGTATTT 60.351 38.462 0.00 0.00 31.53 1.40
718 726 5.126384 CGTGTTTATTGGTCCCCATTGTATT 59.874 40.000 0.00 0.00 31.53 1.89
719 727 4.642885 CGTGTTTATTGGTCCCCATTGTAT 59.357 41.667 0.00 0.00 31.53 2.29
720 728 4.011023 CGTGTTTATTGGTCCCCATTGTA 58.989 43.478 0.00 0.00 31.53 2.41
721 729 2.823154 CGTGTTTATTGGTCCCCATTGT 59.177 45.455 0.00 0.00 31.53 2.71
722 730 2.165437 CCGTGTTTATTGGTCCCCATTG 59.835 50.000 0.00 0.00 31.53 2.82
723 731 2.041891 TCCGTGTTTATTGGTCCCCATT 59.958 45.455 0.00 0.00 31.53 3.16
724 732 1.636519 TCCGTGTTTATTGGTCCCCAT 59.363 47.619 0.00 0.00 31.53 4.00
725 733 1.065647 TCCGTGTTTATTGGTCCCCA 58.934 50.000 0.00 0.00 0.00 4.96
726 734 1.456296 GTCCGTGTTTATTGGTCCCC 58.544 55.000 0.00 0.00 0.00 4.81
727 735 1.081094 CGTCCGTGTTTATTGGTCCC 58.919 55.000 0.00 0.00 0.00 4.46
728 736 1.081094 CCGTCCGTGTTTATTGGTCC 58.919 55.000 0.00 0.00 0.00 4.46
729 737 1.997606 CTCCGTCCGTGTTTATTGGTC 59.002 52.381 0.00 0.00 0.00 4.02
730 738 1.338389 CCTCCGTCCGTGTTTATTGGT 60.338 52.381 0.00 0.00 0.00 3.67
731 739 1.338389 ACCTCCGTCCGTGTTTATTGG 60.338 52.381 0.00 0.00 0.00 3.16
732 740 2.088950 ACCTCCGTCCGTGTTTATTG 57.911 50.000 0.00 0.00 0.00 1.90
733 741 2.827921 ACTACCTCCGTCCGTGTTTATT 59.172 45.455 0.00 0.00 0.00 1.40
734 742 2.450476 ACTACCTCCGTCCGTGTTTAT 58.550 47.619 0.00 0.00 0.00 1.40
735 743 1.909700 ACTACCTCCGTCCGTGTTTA 58.090 50.000 0.00 0.00 0.00 2.01
736 744 1.541588 GTACTACCTCCGTCCGTGTTT 59.458 52.381 0.00 0.00 0.00 2.83
737 745 1.168714 GTACTACCTCCGTCCGTGTT 58.831 55.000 0.00 0.00 0.00 3.32
738 746 0.678048 GGTACTACCTCCGTCCGTGT 60.678 60.000 0.00 0.00 34.73 4.49
739 747 0.677731 TGGTACTACCTCCGTCCGTG 60.678 60.000 6.79 0.00 39.58 4.94
740 748 0.038166 TTGGTACTACCTCCGTCCGT 59.962 55.000 6.79 0.00 39.58 4.69
741 749 1.135286 GTTTGGTACTACCTCCGTCCG 60.135 57.143 6.79 0.00 39.58 4.79
742 750 1.895131 TGTTTGGTACTACCTCCGTCC 59.105 52.381 6.79 0.00 39.58 4.79
743 751 2.821969 TCTGTTTGGTACTACCTCCGTC 59.178 50.000 6.79 0.00 39.58 4.79
744 752 2.824341 CTCTGTTTGGTACTACCTCCGT 59.176 50.000 6.79 0.00 39.58 4.69
745 753 2.824341 ACTCTGTTTGGTACTACCTCCG 59.176 50.000 6.79 0.00 39.58 4.63
746 754 3.195182 GGACTCTGTTTGGTACTACCTCC 59.805 52.174 6.79 0.00 39.58 4.30
747 755 3.195182 GGGACTCTGTTTGGTACTACCTC 59.805 52.174 6.79 0.00 39.58 3.85
748 756 3.171528 GGGACTCTGTTTGGTACTACCT 58.828 50.000 6.79 0.00 39.58 3.08
749 757 2.901839 TGGGACTCTGTTTGGTACTACC 59.098 50.000 0.00 0.00 39.22 3.18
750 758 4.040095 AGTTGGGACTCTGTTTGGTACTAC 59.960 45.833 0.00 0.00 0.00 2.73
751 759 4.228824 AGTTGGGACTCTGTTTGGTACTA 58.771 43.478 0.00 0.00 0.00 1.82
752 760 3.046374 AGTTGGGACTCTGTTTGGTACT 58.954 45.455 0.00 0.00 0.00 2.73
753 761 3.487120 AGTTGGGACTCTGTTTGGTAC 57.513 47.619 0.00 0.00 0.00 3.34
851 859 1.599797 CTGTCACGGTGTTTCCCCC 60.600 63.158 8.17 0.00 0.00 5.40
856 864 2.426522 CATCATCCTGTCACGGTGTTT 58.573 47.619 8.17 0.00 0.00 2.83
877 886 2.789409 AGGATGTGTTTGGTAGCCTC 57.211 50.000 0.00 0.00 0.00 4.70
898 907 3.747266 CCGTTTTGGGCGGTACAA 58.253 55.556 0.00 0.00 43.84 2.41
906 915 2.356194 GCAAGCAGCCGTTTTGGG 60.356 61.111 0.00 0.00 38.63 4.12
907 916 2.730604 CGCAAGCAGCCGTTTTGG 60.731 61.111 0.00 0.00 41.38 3.28
908 917 2.026014 ACGCAAGCAGCCGTTTTG 59.974 55.556 0.00 0.00 45.62 2.44
909 918 2.026014 CACGCAAGCAGCCGTTTT 59.974 55.556 0.00 0.00 45.62 2.43
910 919 3.181169 GACACGCAAGCAGCCGTTT 62.181 57.895 0.00 0.00 45.62 3.60
911 920 3.649986 GACACGCAAGCAGCCGTT 61.650 61.111 0.00 0.00 45.62 4.44
916 925 4.081030 CAGCCGACACGCAAGCAG 62.081 66.667 0.00 0.00 45.62 4.24
917 926 4.908687 ACAGCCGACACGCAAGCA 62.909 61.111 0.00 0.00 45.62 3.91
918 927 4.077188 GACAGCCGACACGCAAGC 62.077 66.667 0.00 0.00 45.62 4.01
919 928 3.767230 CGACAGCCGACACGCAAG 61.767 66.667 0.00 0.00 41.76 4.01
924 933 2.845752 TATTGCCCGACAGCCGACAC 62.846 60.000 0.00 0.00 41.76 3.67
925 934 1.966901 ATATTGCCCGACAGCCGACA 61.967 55.000 0.00 0.00 41.76 4.35
926 935 1.227556 ATATTGCCCGACAGCCGAC 60.228 57.895 0.00 0.00 41.76 4.79
927 936 1.227527 CATATTGCCCGACAGCCGA 60.228 57.895 0.00 0.00 41.76 5.54
928 937 2.896801 GCATATTGCCCGACAGCCG 61.897 63.158 0.00 0.00 37.42 5.52
929 938 3.034030 GCATATTGCCCGACAGCC 58.966 61.111 0.00 0.00 37.42 4.85
938 947 0.810031 ACGACGTCCAGGCATATTGC 60.810 55.000 10.58 0.00 44.08 3.56
939 948 1.327460 CAACGACGTCCAGGCATATTG 59.673 52.381 10.58 0.00 0.00 1.90
940 949 1.206132 TCAACGACGTCCAGGCATATT 59.794 47.619 10.58 0.00 0.00 1.28
941 950 0.821517 TCAACGACGTCCAGGCATAT 59.178 50.000 10.58 0.00 0.00 1.78
942 951 0.821517 ATCAACGACGTCCAGGCATA 59.178 50.000 10.58 0.00 0.00 3.14
943 952 0.460284 GATCAACGACGTCCAGGCAT 60.460 55.000 10.58 0.00 0.00 4.40
944 953 1.080093 GATCAACGACGTCCAGGCA 60.080 57.895 10.58 0.00 0.00 4.75
945 954 0.454600 TAGATCAACGACGTCCAGGC 59.545 55.000 10.58 0.00 0.00 4.85
946 955 4.563337 TTATAGATCAACGACGTCCAGG 57.437 45.455 10.58 0.00 0.00 4.45
947 956 4.441415 GCTTTATAGATCAACGACGTCCAG 59.559 45.833 10.58 0.00 0.00 3.86
948 957 4.097437 AGCTTTATAGATCAACGACGTCCA 59.903 41.667 10.58 0.00 0.00 4.02
949 958 4.608951 AGCTTTATAGATCAACGACGTCC 58.391 43.478 10.58 0.00 0.00 4.79
950 959 6.403615 CAAAGCTTTATAGATCAACGACGTC 58.596 40.000 12.25 5.18 0.00 4.34
951 960 5.220416 GCAAAGCTTTATAGATCAACGACGT 60.220 40.000 12.25 0.00 0.00 4.34
952 961 5.005779 AGCAAAGCTTTATAGATCAACGACG 59.994 40.000 12.25 0.00 33.89 5.12
953 962 6.351327 AGCAAAGCTTTATAGATCAACGAC 57.649 37.500 12.25 0.00 33.89 4.34
989 998 1.146152 AGACGAGAGGAGATAAGGGGG 59.854 57.143 0.00 0.00 0.00 5.40
990 999 2.107552 AGAGACGAGAGGAGATAAGGGG 59.892 54.545 0.00 0.00 0.00 4.79
991 1000 3.408634 GAGAGACGAGAGGAGATAAGGG 58.591 54.545 0.00 0.00 0.00 3.95
992 1001 3.064207 CGAGAGACGAGAGGAGATAAGG 58.936 54.545 0.00 0.00 45.77 2.69
993 1002 3.724374 ACGAGAGACGAGAGGAGATAAG 58.276 50.000 0.00 0.00 45.77 1.73
994 1003 3.385433 AGACGAGAGACGAGAGGAGATAA 59.615 47.826 0.00 0.00 45.77 1.75
995 1004 2.960384 AGACGAGAGACGAGAGGAGATA 59.040 50.000 0.00 0.00 45.77 1.98
996 1005 1.760613 AGACGAGAGACGAGAGGAGAT 59.239 52.381 0.00 0.00 45.77 2.75
997 1006 1.135527 GAGACGAGAGACGAGAGGAGA 59.864 57.143 0.00 0.00 45.77 3.71
998 1007 1.136305 AGAGACGAGAGACGAGAGGAG 59.864 57.143 0.00 0.00 45.77 3.69
999 1008 1.135527 GAGAGACGAGAGACGAGAGGA 59.864 57.143 0.00 0.00 45.77 3.71
1000 1009 1.136305 AGAGAGACGAGAGACGAGAGG 59.864 57.143 0.00 0.00 45.77 3.69
1001 1010 2.099263 AGAGAGAGACGAGAGACGAGAG 59.901 54.545 0.00 0.00 45.77 3.20
1002 1011 2.097036 AGAGAGAGACGAGAGACGAGA 58.903 52.381 0.00 0.00 45.77 4.04
1003 1012 2.579207 AGAGAGAGACGAGAGACGAG 57.421 55.000 0.00 0.00 45.77 4.18
1004 1013 3.887110 AGATAGAGAGAGACGAGAGACGA 59.113 47.826 0.00 0.00 45.77 4.20
1006 1015 5.241949 AGAGAGATAGAGAGAGACGAGAGAC 59.758 48.000 0.00 0.00 0.00 3.36
1007 1016 5.386060 AGAGAGATAGAGAGAGACGAGAGA 58.614 45.833 0.00 0.00 0.00 3.10
1008 1017 5.475220 AGAGAGAGATAGAGAGAGACGAGAG 59.525 48.000 0.00 0.00 0.00 3.20
1009 1018 5.386060 AGAGAGAGATAGAGAGAGACGAGA 58.614 45.833 0.00 0.00 0.00 4.04
1010 1019 5.475220 AGAGAGAGAGATAGAGAGAGACGAG 59.525 48.000 0.00 0.00 0.00 4.18
1011 1020 5.386060 AGAGAGAGAGATAGAGAGAGACGA 58.614 45.833 0.00 0.00 0.00 4.20
1012 1021 5.713792 AGAGAGAGAGATAGAGAGAGACG 57.286 47.826 0.00 0.00 0.00 4.18
1013 1022 6.459923 GGAAGAGAGAGAGATAGAGAGAGAC 58.540 48.000 0.00 0.00 0.00 3.36
1014 1023 5.243954 CGGAAGAGAGAGAGATAGAGAGAGA 59.756 48.000 0.00 0.00 0.00 3.10
1015 1024 5.011125 ACGGAAGAGAGAGAGATAGAGAGAG 59.989 48.000 0.00 0.00 0.00 3.20
1016 1025 4.899457 ACGGAAGAGAGAGAGATAGAGAGA 59.101 45.833 0.00 0.00 0.00 3.10
1017 1026 5.011125 AGACGGAAGAGAGAGAGATAGAGAG 59.989 48.000 0.00 0.00 0.00 3.20
1018 1027 4.899457 AGACGGAAGAGAGAGAGATAGAGA 59.101 45.833 0.00 0.00 0.00 3.10
1019 1028 5.215252 AGACGGAAGAGAGAGAGATAGAG 57.785 47.826 0.00 0.00 0.00 2.43
1020 1029 4.261867 CGAGACGGAAGAGAGAGAGATAGA 60.262 50.000 0.00 0.00 0.00 1.98
1021 1030 3.987868 CGAGACGGAAGAGAGAGAGATAG 59.012 52.174 0.00 0.00 0.00 2.08
1022 1031 3.385433 ACGAGACGGAAGAGAGAGAGATA 59.615 47.826 0.00 0.00 0.00 1.98
1023 1032 2.169769 ACGAGACGGAAGAGAGAGAGAT 59.830 50.000 0.00 0.00 0.00 2.75
1453 1466 1.347221 GCGAGAAATGGTTACGGCG 59.653 57.895 4.80 4.80 0.00 6.46
1456 1469 3.616821 TGAAGATGCGAGAAATGGTTACG 59.383 43.478 0.00 0.00 0.00 3.18
1497 1510 4.464008 TCCCATCAATAAAGCTCCATCAC 58.536 43.478 0.00 0.00 0.00 3.06
1562 1575 3.323979 ACATTAGTGAGACAAACTCCGGT 59.676 43.478 0.00 0.00 44.34 5.28
1563 1576 3.926616 ACATTAGTGAGACAAACTCCGG 58.073 45.455 0.00 0.00 44.34 5.14
1564 1577 5.924475 AAACATTAGTGAGACAAACTCCG 57.076 39.130 0.00 0.00 44.34 4.63
1565 1578 7.964604 ACTAAACATTAGTGAGACAAACTCC 57.035 36.000 2.14 0.00 44.34 3.85
1566 1579 9.042008 TGAACTAAACATTAGTGAGACAAACTC 57.958 33.333 3.70 0.00 45.11 3.01
1567 1580 8.958119 TGAACTAAACATTAGTGAGACAAACT 57.042 30.769 3.70 0.00 0.00 2.66
1568 1581 8.283291 CCTGAACTAAACATTAGTGAGACAAAC 58.717 37.037 3.70 0.00 0.00 2.93
1569 1582 7.444183 CCCTGAACTAAACATTAGTGAGACAAA 59.556 37.037 3.70 0.00 0.00 2.83
1570 1583 6.934645 CCCTGAACTAAACATTAGTGAGACAA 59.065 38.462 3.70 0.00 0.00 3.18
1571 1584 6.464222 CCCTGAACTAAACATTAGTGAGACA 58.536 40.000 3.70 2.92 0.00 3.41
1859 1872 3.071602 GGCAGCCTGATGTTAAGATCCTA 59.928 47.826 3.29 0.00 0.00 2.94
1951 1964 3.005791 GCTTTTGGGTATTGACTGTTGCT 59.994 43.478 0.00 0.00 0.00 3.91
1958 1971 2.352715 GGTGCTGCTTTTGGGTATTGAC 60.353 50.000 0.00 0.00 0.00 3.18
1963 1976 0.179015 TTCGGTGCTGCTTTTGGGTA 60.179 50.000 0.00 0.00 0.00 3.69
1982 1995 9.346005 TGCATGATGATGTACTCTGATTAAATT 57.654 29.630 0.00 0.00 31.50 1.82
1986 1999 5.930569 GCTGCATGATGATGTACTCTGATTA 59.069 40.000 0.00 0.00 31.50 1.75
1999 2012 5.277490 GCGTCTTTTATTAGCTGCATGATGA 60.277 40.000 1.02 0.00 0.00 2.92
2019 2032 3.606065 CTGCTTGCCTGCTTGCGTC 62.606 63.158 0.00 0.00 0.00 5.19
2140 2153 0.391228 TCACGCTCAAGCAGGTAACA 59.609 50.000 2.50 0.00 42.21 2.41
2237 2250 1.064946 CTCCTGGCTCTAGCGAACG 59.935 63.158 0.00 0.00 43.26 3.95
2355 2372 0.400815 AGGACACTGGTTGGGGTACA 60.401 55.000 0.00 0.00 0.00 2.90
2396 2413 5.221742 CCAAACTTATCATAGACCTCCCCTC 60.222 48.000 0.00 0.00 0.00 4.30
2401 2418 8.616076 CATGAAACCAAACTTATCATAGACCTC 58.384 37.037 0.00 0.00 0.00 3.85
2404 2421 7.067494 AGGCATGAAACCAAACTTATCATAGAC 59.933 37.037 0.00 0.00 0.00 2.59
2406 2423 7.198390 CAGGCATGAAACCAAACTTATCATAG 58.802 38.462 0.00 0.00 0.00 2.23
2411 2428 3.515104 CCCAGGCATGAAACCAAACTTAT 59.485 43.478 0.00 0.00 0.00 1.73
2413 2430 1.693606 CCCAGGCATGAAACCAAACTT 59.306 47.619 0.00 0.00 0.00 2.66
2844 2863 5.073144 TCCAAGGTTTGTCTCCATAACTCTT 59.927 40.000 0.00 0.00 0.00 2.85
3339 3495 4.467769 CTGAATATGCCCAAACCATCTCT 58.532 43.478 0.00 0.00 0.00 3.10
3380 3536 2.494445 CCGTCCGCTATGCACTGA 59.506 61.111 0.00 0.00 0.00 3.41
3440 3596 2.743183 CGGACTCCTCCCATGTCAAATC 60.743 54.545 0.00 0.00 31.93 2.17
3533 3689 0.681887 CATGGCTCTGGCACATGGAA 60.682 55.000 7.68 0.00 41.84 3.53
3629 3786 6.102663 CCCTCATTTACAAACAACAACAACA 58.897 36.000 0.00 0.00 0.00 3.33
3646 3803 2.641815 GGATCAGCAGTATCCCCTCATT 59.358 50.000 0.00 0.00 37.52 2.57
3655 3812 3.262915 GGATAAGCAGGGATCAGCAGTAT 59.737 47.826 6.77 4.22 0.00 2.12
3669 3826 0.815213 GCGACATGGCAGGATAAGCA 60.815 55.000 5.99 0.00 0.00 3.91
3678 3835 2.358615 GGACACAGCGACATGGCA 60.359 61.111 0.00 0.00 34.64 4.92
4276 4473 1.202582 ACTGGAACGTCCTCAAGATCG 59.797 52.381 0.00 0.00 37.46 3.69
4446 4643 8.458573 ACAAACCACACAATAGTAATCAGAAA 57.541 30.769 0.00 0.00 0.00 2.52
4483 4680 4.100035 CCATGGTGACTATACTGAGCTCAA 59.900 45.833 18.85 3.88 0.00 3.02
4499 4696 7.336931 ACTGCTTAATTTAGAAGTACCATGGTG 59.663 37.037 28.17 6.18 32.01 4.17
4612 4810 6.894682 TCCATCTTATAACCAACATACAGCA 58.105 36.000 0.00 0.00 0.00 4.41
4613 4811 7.986085 ATCCATCTTATAACCAACATACAGC 57.014 36.000 0.00 0.00 0.00 4.40
4642 4840 6.207221 TCATGACACAGCAAAGTTCACATTAT 59.793 34.615 0.00 0.00 0.00 1.28
4647 4845 3.969117 TCATGACACAGCAAAGTTCAC 57.031 42.857 0.00 0.00 0.00 3.18
4691 4889 6.654161 ACATCATAGAAGCAGATAAAGGATGC 59.346 38.462 0.00 0.00 40.29 3.91
5091 5542 3.404899 GTCCCCTTCGTATTTTGTGTCA 58.595 45.455 0.00 0.00 0.00 3.58
5106 5557 1.639108 GTCCTGGTTTATTGGTCCCCT 59.361 52.381 0.00 0.00 0.00 4.79
5115 5566 3.111741 ACTACCCTCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 36.04 1.40
5188 5639 3.660865 ACTCGAAAACCATGAGTGTACC 58.339 45.455 0.00 0.00 41.21 3.34
5189 5640 3.364023 CGACTCGAAAACCATGAGTGTAC 59.636 47.826 0.00 0.00 42.71 2.90
5190 5641 3.571571 CGACTCGAAAACCATGAGTGTA 58.428 45.455 0.00 0.00 42.71 2.90
5191 5642 2.404215 CGACTCGAAAACCATGAGTGT 58.596 47.619 0.00 0.00 42.71 3.55
5192 5643 1.126846 GCGACTCGAAAACCATGAGTG 59.873 52.381 1.63 0.00 42.71 3.51
5193 5644 1.429463 GCGACTCGAAAACCATGAGT 58.571 50.000 1.63 0.00 45.18 3.41
5194 5645 0.366871 CGCGACTCGAAAACCATGAG 59.633 55.000 0.00 0.00 41.67 2.90
5195 5646 0.038983 TCGCGACTCGAAAACCATGA 60.039 50.000 3.71 0.00 45.36 3.07
5196 5647 2.441023 TCGCGACTCGAAAACCATG 58.559 52.632 3.71 0.00 45.36 3.66
5197 5648 4.979204 TCGCGACTCGAAAACCAT 57.021 50.000 3.71 0.00 45.36 3.55
5207 5658 3.102985 CTCGGATGAGTCGCGACT 58.897 61.111 39.89 39.89 45.84 4.18
5216 5667 2.121538 CCCAGAGCGACTCGGATGA 61.122 63.158 0.00 0.00 35.36 2.92
5217 5668 2.415010 CCCAGAGCGACTCGGATG 59.585 66.667 0.00 4.50 35.36 3.51
5218 5669 2.280404 TACCCCAGAGCGACTCGGAT 62.280 60.000 0.00 8.25 35.36 4.18
5219 5670 2.888464 CTACCCCAGAGCGACTCGGA 62.888 65.000 0.00 0.00 35.36 4.55
5220 5671 2.439701 TACCCCAGAGCGACTCGG 60.440 66.667 0.00 0.00 35.36 4.63
5221 5672 3.111939 CTACCCCAGAGCGACTCG 58.888 66.667 0.00 0.00 35.36 4.18
5222 5673 2.809010 GCTACCCCAGAGCGACTC 59.191 66.667 0.00 0.00 0.00 3.36
5227 5678 2.809010 GAGTCGCTACCCCAGAGC 59.191 66.667 0.00 0.00 36.54 4.09
5228 5679 2.482333 CCGAGTCGCTACCCCAGAG 61.482 68.421 7.12 0.00 0.00 3.35
5229 5680 2.439701 CCGAGTCGCTACCCCAGA 60.440 66.667 7.12 0.00 0.00 3.86
5230 5681 1.601419 TTTCCGAGTCGCTACCCCAG 61.601 60.000 7.12 0.00 0.00 4.45
5231 5682 1.186917 TTTTCCGAGTCGCTACCCCA 61.187 55.000 7.12 0.00 0.00 4.96
5232 5683 0.037046 TTTTTCCGAGTCGCTACCCC 60.037 55.000 7.12 0.00 0.00 4.95
5233 5684 1.337541 ACTTTTTCCGAGTCGCTACCC 60.338 52.381 7.12 0.00 0.00 3.69
5234 5685 1.991264 GACTTTTTCCGAGTCGCTACC 59.009 52.381 7.12 0.00 34.76 3.18
5243 5694 0.949105 GCAGGCTCGACTTTTTCCGA 60.949 55.000 0.00 0.00 0.00 4.55
5244 5695 1.227999 TGCAGGCTCGACTTTTTCCG 61.228 55.000 0.00 0.00 0.00 4.30
5245 5696 0.519077 CTGCAGGCTCGACTTTTTCC 59.481 55.000 5.57 0.00 0.00 3.13
5246 5697 1.230324 ACTGCAGGCTCGACTTTTTC 58.770 50.000 19.93 0.00 0.00 2.29
5247 5698 1.334869 CAACTGCAGGCTCGACTTTTT 59.665 47.619 19.93 0.00 0.00 1.94
5248 5699 0.947244 CAACTGCAGGCTCGACTTTT 59.053 50.000 19.93 0.00 0.00 2.27
5249 5700 1.510480 GCAACTGCAGGCTCGACTTT 61.510 55.000 19.93 0.00 41.59 2.66
5250 5701 1.963338 GCAACTGCAGGCTCGACTT 60.963 57.895 19.93 0.00 41.59 3.01
5251 5702 2.358003 GCAACTGCAGGCTCGACT 60.358 61.111 19.93 0.00 41.59 4.18
5252 5703 3.782244 CGCAACTGCAGGCTCGAC 61.782 66.667 19.93 0.00 42.21 4.20
5253 5704 3.989787 TCGCAACTGCAGGCTCGA 61.990 61.111 19.93 18.82 42.21 4.04
5254 5705 2.819117 TAGTCGCAACTGCAGGCTCG 62.819 60.000 19.93 16.84 42.21 5.03
5255 5706 1.079819 TAGTCGCAACTGCAGGCTC 60.080 57.895 19.93 8.48 42.21 4.70
5256 5707 1.079543 CTAGTCGCAACTGCAGGCT 60.080 57.895 19.93 0.99 42.21 4.58
5257 5708 1.355066 GACTAGTCGCAACTGCAGGC 61.355 60.000 19.93 11.86 42.21 4.85
5258 5709 1.073216 CGACTAGTCGCAACTGCAGG 61.073 60.000 30.44 1.57 46.50 4.85
5259 5710 2.353807 CGACTAGTCGCAACTGCAG 58.646 57.895 30.44 13.48 46.50 4.41
5260 5711 4.552278 CGACTAGTCGCAACTGCA 57.448 55.556 30.44 0.00 46.50 4.41
5302 5753 1.937223 AGTCGATGTGTGTCGCAAAAA 59.063 42.857 0.00 0.00 41.22 1.94
5303 5754 1.577468 AGTCGATGTGTGTCGCAAAA 58.423 45.000 0.00 0.00 41.22 2.44
5304 5755 2.425578 TAGTCGATGTGTGTCGCAAA 57.574 45.000 0.00 0.00 41.22 3.68
5305 5756 2.425578 TTAGTCGATGTGTGTCGCAA 57.574 45.000 0.00 0.00 41.22 4.85
5306 5757 2.526077 GATTAGTCGATGTGTGTCGCA 58.474 47.619 0.00 0.00 41.22 5.10
5319 5770 0.588233 TTCGAGTCGCGCGATTAGTC 60.588 55.000 37.03 25.93 40.61 2.59
5320 5771 0.179181 TTTCGAGTCGCGCGATTAGT 60.179 50.000 37.03 20.59 40.61 2.24
5321 5772 0.911856 TTTTCGAGTCGCGCGATTAG 59.088 50.000 37.03 30.42 40.61 1.73
5322 5773 0.636733 GTTTTCGAGTCGCGCGATTA 59.363 50.000 37.03 15.27 40.61 1.75
5323 5774 1.414897 GTTTTCGAGTCGCGCGATT 59.585 52.632 37.03 32.69 40.61 3.34
5324 5775 2.442188 GGTTTTCGAGTCGCGCGAT 61.442 57.895 37.03 23.91 40.61 4.58
5325 5776 3.101428 GGTTTTCGAGTCGCGCGA 61.101 61.111 31.40 31.40 40.61 5.87
5326 5777 2.726691 ATGGTTTTCGAGTCGCGCG 61.727 57.895 26.76 26.76 40.61 6.86
5327 5778 1.225745 CATGGTTTTCGAGTCGCGC 60.226 57.895 7.92 0.00 40.61 6.86
5328 5779 1.419922 CCATGGTTTTCGAGTCGCG 59.580 57.895 7.92 0.00 42.69 5.87
5329 5780 0.953960 ACCCATGGTTTTCGAGTCGC 60.954 55.000 11.73 0.00 27.29 5.19
5330 5781 1.997606 GTACCCATGGTTTTCGAGTCG 59.002 52.381 11.73 6.09 37.09 4.18
5331 5782 2.740447 GTGTACCCATGGTTTTCGAGTC 59.260 50.000 11.73 0.00 37.09 3.36
5332 5783 2.370849 AGTGTACCCATGGTTTTCGAGT 59.629 45.455 11.73 1.67 37.09 4.18
5333 5784 3.053831 AGTGTACCCATGGTTTTCGAG 57.946 47.619 11.73 0.00 37.09 4.04
5334 5785 3.142951 CAAGTGTACCCATGGTTTTCGA 58.857 45.455 11.73 0.00 37.09 3.71
5335 5786 2.882137 ACAAGTGTACCCATGGTTTTCG 59.118 45.455 11.73 0.00 37.09 3.46
5336 5787 3.634910 ACACAAGTGTACCCATGGTTTTC 59.365 43.478 11.73 0.00 42.90 2.29
5337 5788 3.383185 CACACAAGTGTACCCATGGTTTT 59.617 43.478 11.73 0.00 42.83 2.43
5338 5789 2.955660 CACACAAGTGTACCCATGGTTT 59.044 45.455 11.73 0.00 42.83 3.27
5339 5790 2.173782 TCACACAAGTGTACCCATGGTT 59.826 45.455 11.73 0.00 46.01 3.67
5340 5791 1.771854 TCACACAAGTGTACCCATGGT 59.228 47.619 11.73 1.30 46.01 3.55
5341 5792 2.038426 TCTCACACAAGTGTACCCATGG 59.962 50.000 4.14 4.14 46.01 3.66
5342 5793 3.401033 TCTCACACAAGTGTACCCATG 57.599 47.619 5.41 0.00 46.01 3.66
5343 5794 3.496160 GGTTCTCACACAAGTGTACCCAT 60.496 47.826 5.41 0.00 46.01 4.00
5344 5795 2.158871 GGTTCTCACACAAGTGTACCCA 60.159 50.000 5.41 0.00 46.01 4.51
5345 5796 2.158871 TGGTTCTCACACAAGTGTACCC 60.159 50.000 16.33 8.78 46.01 3.69
5438 5890 7.990886 AGAAGGTGTAAAGTATCAAGTGTTTGA 59.009 33.333 0.00 0.00 46.67 2.69
5521 5973 1.741028 TGTTCCTCACCCATTCCTCA 58.259 50.000 0.00 0.00 0.00 3.86
5725 6177 1.448013 GCCACGGTTCTGACTAGGC 60.448 63.158 0.00 0.00 32.79 3.93
5827 6324 3.965258 AGCATTCGGGGTGCACCA 61.965 61.111 35.78 17.29 44.87 4.17
5844 6341 2.075566 TGCCCTGTCTGTGGGTTCA 61.076 57.895 0.00 0.00 46.22 3.18
5974 6471 2.040278 AGCTTGACCACCTTGCTGATAA 59.960 45.455 0.00 0.00 32.32 1.75
6194 6691 1.197721 GTTCACGTTGCCTCATCCTTG 59.802 52.381 0.00 0.00 0.00 3.61
6220 6717 1.373497 CGACTCAGTGGCACCTCAC 60.373 63.158 15.27 1.81 37.89 3.51
6291 6788 3.921021 GGATGTATACTACTGCACATCGC 59.079 47.826 4.17 0.00 45.28 4.58
6660 7322 5.253335 CGTGCTATAAACGGCTTTACTTTC 58.747 41.667 0.70 0.00 37.39 2.62
6664 7326 2.606272 AGCGTGCTATAAACGGCTTTAC 59.394 45.455 9.06 0.00 41.31 2.01
6665 7327 2.896168 AGCGTGCTATAAACGGCTTTA 58.104 42.857 9.06 0.00 41.31 1.85
6666 7328 1.734163 AGCGTGCTATAAACGGCTTT 58.266 45.000 9.06 0.00 41.31 3.51
6667 7329 2.589798 TAGCGTGCTATAAACGGCTT 57.410 45.000 9.06 0.00 41.31 4.35
6690 7352 3.325870 TGGCAAGACAATTCTCTACACG 58.674 45.455 0.00 0.00 0.00 4.49
6695 7357 6.716628 TGACTTATTTGGCAAGACAATTCTCT 59.283 34.615 0.00 0.00 0.00 3.10
6707 7369 6.098679 GCATTGTACATTGACTTATTTGGCA 58.901 36.000 19.36 0.00 0.00 4.92
6710 7372 6.688385 CGAGGCATTGTACATTGACTTATTTG 59.312 38.462 23.43 10.45 30.80 2.32
6717 7379 2.009774 AGCGAGGCATTGTACATTGAC 58.990 47.619 19.36 17.02 0.00 3.18
6744 7406 1.758936 AGTGCCGCCCCTAAAAATAC 58.241 50.000 0.00 0.00 0.00 1.89
6942 7647 7.489113 AGTTTTTAACACTCAAGCAAATCACTG 59.511 33.333 0.00 0.00 0.00 3.66
6951 7656 8.697846 ACCTTTTTAGTTTTTAACACTCAAGC 57.302 30.769 0.00 0.00 0.00 4.01
6988 7693 9.787435 TGTTCCAAAATACTGTAATTCTACACT 57.213 29.630 0.00 0.00 34.28 3.55
7002 7716 7.542824 GTCACTACTCTCTCTGTTCCAAAATAC 59.457 40.741 0.00 0.00 0.00 1.89
7079 7793 7.963532 TCACTACTCTCTGTTCCAAAATACTT 58.036 34.615 0.00 0.00 0.00 2.24
7139 7853 7.110155 TCTGTGTAATTCTACCATCCCTTTTC 58.890 38.462 0.00 0.00 0.00 2.29
7208 7922 0.900182 CCCCCAGCCTTTTTCCAGTC 60.900 60.000 0.00 0.00 0.00 3.51
7209 7923 1.156095 CCCCCAGCCTTTTTCCAGT 59.844 57.895 0.00 0.00 0.00 4.00
7210 7924 2.285773 GCCCCCAGCCTTTTTCCAG 61.286 63.158 0.00 0.00 34.35 3.86
7211 7925 2.203773 GCCCCCAGCCTTTTTCCA 60.204 61.111 0.00 0.00 34.35 3.53
7212 7926 3.381983 CGCCCCCAGCCTTTTTCC 61.382 66.667 0.00 0.00 38.78 3.13
7213 7927 2.282887 TCGCCCCCAGCCTTTTTC 60.283 61.111 0.00 0.00 38.78 2.29
7214 7928 2.600470 GTCGCCCCCAGCCTTTTT 60.600 61.111 0.00 0.00 38.78 1.94
7232 7946 3.858868 TTGACGACCGGCACAGAGC 62.859 63.158 0.00 0.00 44.65 4.09
7233 7947 1.300620 TTTGACGACCGGCACAGAG 60.301 57.895 0.00 0.00 29.74 3.35
7234 7948 1.593209 GTTTGACGACCGGCACAGA 60.593 57.895 0.00 0.00 29.74 3.41
7235 7949 2.604174 GGTTTGACGACCGGCACAG 61.604 63.158 0.00 0.00 29.74 3.66
7236 7950 2.589442 GGTTTGACGACCGGCACA 60.589 61.111 0.00 0.00 29.74 4.57
7237 7951 2.589442 TGGTTTGACGACCGGCAC 60.589 61.111 0.00 0.00 42.83 5.01
7238 7952 2.589442 GTGGTTTGACGACCGGCA 60.589 61.111 0.00 0.00 42.83 5.69
7239 7953 2.589442 TGTGGTTTGACGACCGGC 60.589 61.111 0.00 0.00 42.83 6.13
7240 7954 2.591311 CGTGTGGTTTGACGACCGG 61.591 63.158 0.00 0.00 42.83 5.28
7241 7955 0.594540 TACGTGTGGTTTGACGACCG 60.595 55.000 0.00 0.00 42.83 4.79
7242 7956 3.271142 TACGTGTGGTTTGACGACC 57.729 52.632 0.00 0.00 38.94 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.