Multiple sequence alignment - TraesCS7B01G159800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G159800 chr7B 100.000 4001 0 0 1 4001 218382423 218386423 0.000000e+00 7389.0
1 TraesCS7B01G159800 chr7B 92.958 71 5 0 1831 1901 224735982 224735912 1.970000e-18 104.0
2 TraesCS7B01G159800 chr7D 95.258 3543 119 28 1 3515 242407652 242411173 0.000000e+00 5566.0
3 TraesCS7B01G159800 chr7D 94.000 450 27 0 3551 4000 242411172 242411621 0.000000e+00 682.0
4 TraesCS7B01G159800 chr7D 78.723 141 30 0 3850 3990 99183608 99183748 1.180000e-15 95.3
5 TraesCS7B01G159800 chr7A 91.754 3529 154 66 1 3486 255581773 255578339 0.000000e+00 4778.0
6 TraesCS7B01G159800 chr7A 82.456 114 15 4 3293 3403 254917264 254917153 1.180000e-15 95.3
7 TraesCS7B01G159800 chr1D 82.927 451 56 11 3551 3999 50706041 50706472 1.740000e-103 387.0
8 TraesCS7B01G159800 chr1D 84.112 214 33 1 3785 3998 289949602 289949814 5.240000e-49 206.0
9 TraesCS7B01G159800 chr1D 74.216 287 64 9 3504 3785 29833020 29833301 1.180000e-20 111.0
10 TraesCS7B01G159800 chr5B 79.960 494 85 9 3506 3994 526265874 526265390 6.360000e-93 351.0
11 TraesCS7B01G159800 chr5B 77.992 518 98 9 3484 3998 564466589 564466085 1.080000e-80 311.0
12 TraesCS7B01G159800 chr1A 84.900 351 47 4 3651 3999 49886845 49887191 2.290000e-92 350.0
13 TraesCS7B01G159800 chr3D 81.298 262 48 1 3482 3742 582885794 582885533 1.130000e-50 211.0
14 TraesCS7B01G159800 chr2A 89.916 119 12 0 3880 3998 728061570 728061452 1.930000e-33 154.0
15 TraesCS7B01G159800 chr6B 85.065 154 18 4 3845 3998 623340112 623340260 6.930000e-33 152.0
16 TraesCS7B01G159800 chr6B 92.958 71 5 0 1831 1901 33295876 33295946 1.970000e-18 104.0
17 TraesCS7B01G159800 chr4D 91.549 71 6 0 1831 1901 356511510 356511440 9.150000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G159800 chr7B 218382423 218386423 4000 False 7389 7389 100.000 1 4001 1 chr7B.!!$F1 4000
1 TraesCS7B01G159800 chr7D 242407652 242411621 3969 False 3124 5566 94.629 1 4000 2 chr7D.!!$F2 3999
2 TraesCS7B01G159800 chr7A 255578339 255581773 3434 True 4778 4778 91.754 1 3486 1 chr7A.!!$R2 3485
3 TraesCS7B01G159800 chr5B 564466085 564466589 504 True 311 311 77.992 3484 3998 1 chr5B.!!$R2 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
394 397 0.098728 CATTGGGAATCGGTGCGAAC 59.901 55.0 0.0 0.0 39.99 3.95 F
1056 1068 0.035152 ATCTCAACGCTGCCCAATCA 60.035 50.0 0.0 0.0 0.00 2.57 F
1065 1077 0.524862 CTGCCCAATCAGTTGTGCTC 59.475 55.0 0.0 0.0 39.16 4.26 F
1929 1956 0.944999 AAGCTGGATCTCCCCCTCTA 59.055 55.0 0.0 0.0 34.29 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1696 1717 2.520968 GGGGGAAACACACCAGCT 59.479 61.111 0.00 0.0 45.54 4.24 R
2805 2837 0.530288 GGATTGCTTGGGCGCTTAAA 59.470 50.000 7.64 0.0 42.25 1.52 R
2896 2928 1.210204 TCTTTCAGGGCAGCAGGGAT 61.210 55.000 0.00 0.0 0.00 3.85 R
3532 3576 0.102844 GCCACAGCAAAGCAACAGAA 59.897 50.000 0.00 0.0 39.53 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 2.033141 TCGTCGTCGTCCCTTCCT 59.967 61.111 1.33 0.00 38.33 3.36
82 83 1.601759 TCGTCGTCGTCCCTTCCTT 60.602 57.895 1.33 0.00 38.33 3.36
83 84 1.154073 CGTCGTCGTCCCTTCCTTC 60.154 63.158 0.00 0.00 0.00 3.46
84 85 1.214853 GTCGTCGTCCCTTCCTTCC 59.785 63.158 0.00 0.00 0.00 3.46
85 86 1.980772 TCGTCGTCCCTTCCTTCCC 60.981 63.158 0.00 0.00 0.00 3.97
86 87 1.982938 CGTCGTCCCTTCCTTCCCT 60.983 63.158 0.00 0.00 0.00 4.20
87 88 1.898885 GTCGTCCCTTCCTTCCCTC 59.101 63.158 0.00 0.00 0.00 4.30
88 89 0.903454 GTCGTCCCTTCCTTCCCTCA 60.903 60.000 0.00 0.00 0.00 3.86
89 90 0.178915 TCGTCCCTTCCTTCCCTCAA 60.179 55.000 0.00 0.00 0.00 3.02
154 155 1.839296 CTCCCCCGATTCCTCCCTC 60.839 68.421 0.00 0.00 0.00 4.30
163 164 2.946988 ATTCCTCCCTCGCGATCCCA 62.947 60.000 10.36 0.00 0.00 4.37
234 235 2.746803 CGGCGTGATCCGTTTTCCC 61.747 63.158 0.00 0.00 44.18 3.97
302 303 2.017049 GGTTAGCGTGGATGAAATGCT 58.983 47.619 0.00 0.00 42.47 3.79
394 397 0.098728 CATTGGGAATCGGTGCGAAC 59.901 55.000 0.00 0.00 39.99 3.95
405 408 0.319641 GGTGCGAACTCGAGGTTTCT 60.320 55.000 18.41 0.00 43.02 2.52
409 412 1.419374 CGAACTCGAGGTTTCTGTGG 58.581 55.000 18.41 0.00 43.02 4.17
410 413 1.269621 CGAACTCGAGGTTTCTGTGGT 60.270 52.381 18.41 0.00 43.02 4.16
411 414 2.802057 CGAACTCGAGGTTTCTGTGGTT 60.802 50.000 18.41 0.00 43.02 3.67
414 419 0.534203 TCGAGGTTTCTGTGGTTGGC 60.534 55.000 0.00 0.00 0.00 4.52
420 425 2.229792 GTTTCTGTGGTTGGCTGATGA 58.770 47.619 0.00 0.00 0.00 2.92
429 434 5.133221 GTGGTTGGCTGATGAATATTAGGT 58.867 41.667 0.00 0.00 0.00 3.08
443 448 8.461685 TGAATATTAGGTCATGGATGGGATTA 57.538 34.615 0.00 0.00 0.00 1.75
448 453 2.494059 GTCATGGATGGGATTACGGTG 58.506 52.381 0.00 0.00 0.00 4.94
499 508 1.012086 CGCACCTACTACTACGCTCA 58.988 55.000 0.00 0.00 0.00 4.26
509 518 2.285827 ACTACGCTCAGTGATGCTTC 57.714 50.000 11.22 0.00 0.00 3.86
532 541 3.808174 GGTTGTTGAGTTGACTCTACCAC 59.192 47.826 18.41 17.20 44.36 4.16
536 545 1.534163 TGAGTTGACTCTACCACGTCG 59.466 52.381 12.00 0.00 43.25 5.12
551 560 3.003378 CCACGTCGCTGATCTAGTTCATA 59.997 47.826 3.98 0.00 0.00 2.15
665 674 6.395426 TGATTGCTCAACAGAAATGAAGTT 57.605 33.333 0.00 0.00 26.21 2.66
668 677 7.436080 TGATTGCTCAACAGAAATGAAGTTTTC 59.564 33.333 0.00 0.00 36.13 2.29
696 705 4.846940 ACAGAGGAATTTAGGTCAAGGAGT 59.153 41.667 0.00 0.00 0.00 3.85
700 709 4.043435 AGGAATTTAGGTCAAGGAGTGCTT 59.957 41.667 0.00 0.00 0.00 3.91
716 725 0.179018 GCTTCCCAGTGTCCACAGTT 60.179 55.000 0.00 0.00 0.00 3.16
824 834 5.181690 TGCACTAGTTTTTGTTGCTTAGG 57.818 39.130 0.00 0.00 0.00 2.69
844 854 7.413877 GCTTAGGATAGCTGCATTGTCATATTC 60.414 40.741 1.02 0.00 38.15 1.75
850 860 8.681486 ATAGCTGCATTGTCATATTCTTGTTA 57.319 30.769 1.02 0.00 0.00 2.41
851 861 7.024340 AGCTGCATTGTCATATTCTTGTTAG 57.976 36.000 1.02 0.00 0.00 2.34
852 862 6.825213 AGCTGCATTGTCATATTCTTGTTAGA 59.175 34.615 1.02 0.00 0.00 2.10
853 863 7.501559 AGCTGCATTGTCATATTCTTGTTAGAT 59.498 33.333 1.02 0.00 0.00 1.98
1044 1056 3.844577 AGTGCATTGCAAGATCTCAAC 57.155 42.857 13.94 0.00 41.47 3.18
1050 1062 1.300971 TGCAAGATCTCAACGCTGCC 61.301 55.000 11.33 0.00 0.00 4.85
1056 1068 0.035152 ATCTCAACGCTGCCCAATCA 60.035 50.000 0.00 0.00 0.00 2.57
1065 1077 0.524862 CTGCCCAATCAGTTGTGCTC 59.475 55.000 0.00 0.00 39.16 4.26
1164 1185 3.614092 AGGAAATGCTGTACCTGATGTG 58.386 45.455 0.00 0.00 0.00 3.21
1176 1197 2.309755 ACCTGATGTGACCAATGGATGT 59.690 45.455 6.16 0.00 0.00 3.06
1195 1216 6.323739 TGGATGTGATGCTGTAGTTGTAGATA 59.676 38.462 0.00 0.00 0.00 1.98
1197 1218 7.543868 GGATGTGATGCTGTAGTTGTAGATATC 59.456 40.741 0.00 0.00 0.00 1.63
1200 1221 6.799441 GTGATGCTGTAGTTGTAGATATCGAG 59.201 42.308 0.00 0.00 0.00 4.04
1421 1442 3.740044 AATAATGTTCGTCAGTTGGCG 57.260 42.857 0.00 0.00 45.75 5.69
1536 1557 8.487970 CGTCCATAATGCTGTAAAACTATACTG 58.512 37.037 0.00 0.00 0.00 2.74
1696 1717 5.003160 ACAAATGGTCGACTTGATTGATCA 58.997 37.500 19.37 5.57 36.19 2.92
1736 1761 9.325198 CCCCCTTCTTAAAATGTTAAATATTGC 57.675 33.333 0.00 0.00 0.00 3.56
1929 1956 0.944999 AAGCTGGATCTCCCCCTCTA 59.055 55.000 0.00 0.00 34.29 2.43
1961 1988 2.603075 AAATGCAGCCCTACCTCAAA 57.397 45.000 0.00 0.00 0.00 2.69
2051 2078 4.584743 AGTGGAAGTCTCACCCAAAAATTC 59.415 41.667 0.00 0.00 35.87 2.17
2225 2253 6.007703 TCCATGGGGTTTAGTTAAGAGTTTG 58.992 40.000 13.02 0.00 34.93 2.93
2415 2443 7.755373 TGTAGTCTGTATGTTCAAAGATCTTCG 59.245 37.037 8.78 0.00 0.00 3.79
2489 2521 2.669569 GTGTGGGTCTGCGTGCAT 60.670 61.111 0.00 0.00 0.00 3.96
2530 2562 8.893219 TGCTGTTCTAAATATGAGGAATACAG 57.107 34.615 0.00 0.00 0.00 2.74
2531 2563 7.933577 TGCTGTTCTAAATATGAGGAATACAGG 59.066 37.037 0.00 0.00 0.00 4.00
2568 2600 9.880064 GTTTTATGACAGTAACTTCTTCTTTCC 57.120 33.333 0.00 0.00 0.00 3.13
2847 2879 1.383943 TGTCACTGTGGGTGTCCCT 60.384 57.895 8.11 0.00 45.70 4.20
2894 2926 1.642952 GCTGCTCTGAAAGAAGGCGG 61.643 60.000 0.00 0.00 46.34 6.13
2896 2928 1.672356 GCTCTGAAAGAAGGCGGCA 60.672 57.895 13.08 0.00 46.34 5.69
2919 2951 0.251077 CTGCTGCCCTGAAAGAAGGT 60.251 55.000 0.00 0.00 35.34 3.50
2957 2989 1.581447 CTCCAAAAGAAGGTGGCGC 59.419 57.895 0.00 0.00 34.68 6.53
3071 3104 4.884458 TTCACGTTTTTGCTGTACATGA 57.116 36.364 0.00 0.00 0.00 3.07
3131 3164 2.697654 CTGGAGTTCTTCAGGCTTGAG 58.302 52.381 0.00 0.00 34.15 3.02
3284 3317 5.591877 ACCGTTCGATATTTGGAGTACTACT 59.408 40.000 6.66 0.00 0.00 2.57
3463 3507 1.627550 GGAGAGCGGAGAACGTTTGC 61.628 60.000 0.46 4.94 46.52 3.68
3492 3536 3.389329 AGTCATAATCAGCAGATCCGGTT 59.611 43.478 0.00 0.00 31.90 4.44
3537 3581 4.681978 GCGGGTCGGTGCTTCTGT 62.682 66.667 0.00 0.00 0.00 3.41
3543 3587 0.663153 GTCGGTGCTTCTGTTGCTTT 59.337 50.000 0.00 0.00 0.00 3.51
3548 3592 1.105457 TGCTTCTGTTGCTTTGCTGT 58.895 45.000 0.00 0.00 0.00 4.40
3653 3698 3.320879 CTGCATCCGGTGGCTCTGT 62.321 63.158 18.26 0.00 0.00 3.41
3662 3707 0.108585 GGTGGCTCTGTGTCTGGAAA 59.891 55.000 0.00 0.00 0.00 3.13
3679 3725 3.019564 GGAAACAGTTGATGGATCTGGG 58.980 50.000 0.00 0.00 34.02 4.45
3713 3759 3.109592 TTGGCCGTCGGTGGTCTTT 62.110 57.895 13.94 0.00 33.69 2.52
3743 3789 1.257743 GTAGGCTATGGCGGATCTCA 58.742 55.000 0.00 0.00 39.81 3.27
3756 3802 2.430332 CGGATCTCAGAGCCTCTTCTTT 59.570 50.000 7.53 0.00 35.75 2.52
3794 3840 2.598467 GTGGTGGTGGTTGGTGGA 59.402 61.111 0.00 0.00 0.00 4.02
3800 3846 0.106918 TGGTGGTTGGTGGACTTGTC 60.107 55.000 0.00 0.00 0.00 3.18
3865 3911 1.368579 GGTGAAAACCCCGTCTCGA 59.631 57.895 0.00 0.00 0.00 4.04
3927 3973 1.361204 TGACCTTCTTGGAGGCATCA 58.639 50.000 0.00 0.00 40.65 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 1.596496 GGAGGGATTGAGGGAAGGAA 58.404 55.000 0.00 0.00 0.00 3.36
81 82 0.327576 GGAGGGAGGGATTGAGGGAA 60.328 60.000 0.00 0.00 0.00 3.97
82 83 1.318380 GGAGGGAGGGATTGAGGGA 59.682 63.158 0.00 0.00 0.00 4.20
83 84 1.772156 GGGAGGGAGGGATTGAGGG 60.772 68.421 0.00 0.00 0.00 4.30
84 85 2.143419 CGGGAGGGAGGGATTGAGG 61.143 68.421 0.00 0.00 0.00 3.86
85 86 2.812619 GCGGGAGGGAGGGATTGAG 61.813 68.421 0.00 0.00 0.00 3.02
86 87 2.768344 GCGGGAGGGAGGGATTGA 60.768 66.667 0.00 0.00 0.00 2.57
87 88 2.770048 AGCGGGAGGGAGGGATTG 60.770 66.667 0.00 0.00 0.00 2.67
88 89 2.770048 CAGCGGGAGGGAGGGATT 60.770 66.667 0.00 0.00 0.00 3.01
132 133 1.233369 GAGGAATCGGGGGAGGAGA 59.767 63.158 0.00 0.00 0.00 3.71
133 134 1.839296 GGAGGAATCGGGGGAGGAG 60.839 68.421 0.00 0.00 0.00 3.69
134 135 2.285868 GGAGGAATCGGGGGAGGA 59.714 66.667 0.00 0.00 0.00 3.71
163 164 3.376078 CAAATGCTGCTGCGGGGT 61.376 61.111 10.99 0.00 43.34 4.95
234 235 4.467198 ACACCTAGAAATTACTGGGACG 57.533 45.455 0.00 0.00 40.28 4.79
302 303 1.145571 AGGAAGCACTAAACACCCCA 58.854 50.000 0.00 0.00 0.00 4.96
394 397 1.512926 CCAACCACAGAAACCTCGAG 58.487 55.000 5.13 5.13 0.00 4.04
405 408 5.132502 CCTAATATTCATCAGCCAACCACA 58.867 41.667 0.00 0.00 0.00 4.17
409 412 6.072286 CCATGACCTAATATTCATCAGCCAAC 60.072 42.308 0.00 0.00 29.64 3.77
410 413 6.005823 CCATGACCTAATATTCATCAGCCAA 58.994 40.000 0.00 0.00 29.64 4.52
411 414 5.310331 TCCATGACCTAATATTCATCAGCCA 59.690 40.000 0.00 0.00 29.64 4.75
414 419 6.827251 CCCATCCATGACCTAATATTCATCAG 59.173 42.308 0.00 0.00 29.64 2.90
420 425 7.338710 CGTAATCCCATCCATGACCTAATATT 58.661 38.462 0.00 0.00 0.00 1.28
429 434 1.419762 CCACCGTAATCCCATCCATGA 59.580 52.381 0.00 0.00 0.00 3.07
443 448 0.250793 TATTTCCGCATGACCACCGT 59.749 50.000 0.00 0.00 0.00 4.83
448 453 1.594331 GACCCTATTTCCGCATGACC 58.406 55.000 0.00 0.00 0.00 4.02
499 508 2.146342 CTCAACAACCGAAGCATCACT 58.854 47.619 0.00 0.00 0.00 3.41
509 518 3.057734 GGTAGAGTCAACTCAACAACCG 58.942 50.000 12.43 0.00 45.21 4.44
532 541 4.024809 TCACTATGAACTAGATCAGCGACG 60.025 45.833 8.77 0.00 31.76 5.12
536 545 7.384660 CAGGAATTCACTATGAACTAGATCAGC 59.615 40.741 7.93 0.00 39.45 4.26
551 560 0.606401 CCGCCACACAGGAATTCACT 60.606 55.000 7.93 0.00 41.22 3.41
665 674 7.218614 TGACCTAAATTCCTCTGTAAACGAAA 58.781 34.615 0.00 0.00 0.00 3.46
668 677 6.092259 CCTTGACCTAAATTCCTCTGTAAACG 59.908 42.308 0.00 0.00 0.00 3.60
696 705 1.344953 ACTGTGGACACTGGGAAGCA 61.345 55.000 12.84 0.00 35.00 3.91
700 709 2.104111 CACTAAACTGTGGACACTGGGA 59.896 50.000 12.84 0.00 35.00 4.37
716 725 9.226606 ACAAAATATGAAAGTCGATTCCACTAA 57.773 29.630 0.00 0.00 0.00 2.24
824 834 7.199541 ACAAGAATATGACAATGCAGCTATC 57.800 36.000 0.00 0.00 0.00 2.08
850 860 7.497249 GGCAGTACTAAGTCATTCAATCAATCT 59.503 37.037 0.00 0.00 0.00 2.40
851 861 7.497249 AGGCAGTACTAAGTCATTCAATCAATC 59.503 37.037 0.00 0.00 0.00 2.67
852 862 7.281774 CAGGCAGTACTAAGTCATTCAATCAAT 59.718 37.037 0.00 0.00 0.00 2.57
853 863 6.595326 CAGGCAGTACTAAGTCATTCAATCAA 59.405 38.462 0.00 0.00 0.00 2.57
1044 1056 1.210931 CACAACTGATTGGGCAGCG 59.789 57.895 0.00 0.00 40.42 5.18
1050 1062 2.084610 TCTCGAGCACAACTGATTGG 57.915 50.000 7.81 0.00 40.42 3.16
1056 1068 1.953559 TGCTTTTCTCGAGCACAACT 58.046 45.000 7.81 0.00 44.63 3.16
1065 1077 4.034510 ACAGAACTGTCTTTGCTTTTCTCG 59.965 41.667 1.32 0.00 40.24 4.04
1164 1185 2.372264 ACAGCATCACATCCATTGGTC 58.628 47.619 1.86 0.00 0.00 4.02
1176 1197 6.486993 ACTCGATATCTACAACTACAGCATCA 59.513 38.462 0.34 0.00 0.00 3.07
1197 1218 9.340695 GTGAGATTCTCAGAATCAATATACTCG 57.659 37.037 26.10 0.00 41.46 4.18
1511 1532 8.283291 GCAGTATAGTTTTACAGCATTATGGAC 58.717 37.037 0.00 0.00 35.40 4.02
1696 1717 2.520968 GGGGGAAACACACCAGCT 59.479 61.111 0.00 0.00 45.54 4.24
1736 1761 7.364522 ACTAAACACATACAGTTATGCACAG 57.635 36.000 0.00 0.00 39.07 3.66
1744 1769 8.952278 TCAAGTGAAAACTAAACACATACAGTT 58.048 29.630 0.00 0.00 37.05 3.16
1768 1793 5.945191 TCATGGTTAGTGCAAGAAATCATCA 59.055 36.000 0.00 0.00 0.00 3.07
1961 1988 3.670625 TCGAATTCGTGGATTCCTGTTT 58.329 40.909 25.93 0.00 40.80 2.83
2051 2078 8.828688 TTGACAATAAGCTATGATCTCAGATG 57.171 34.615 0.00 0.00 0.00 2.90
2136 2164 9.542462 GTACAACTGTATCTAATTGAGCCATTA 57.458 33.333 0.00 0.00 32.54 1.90
2225 2253 2.808543 ACTTCTGGAAGACGTTCAATGC 59.191 45.455 16.06 0.00 43.62 3.56
2322 2350 3.383505 CCACCACATGCATGAAATCATCT 59.616 43.478 32.75 4.93 33.61 2.90
2415 2443 2.290323 ACCCTACTGAAATGACTGGTGC 60.290 50.000 0.00 0.00 0.00 5.01
2469 2501 2.203139 CACGCAGACCCACACCAA 60.203 61.111 0.00 0.00 0.00 3.67
2489 2521 0.685097 AGCAACCAAGAGTAAGCCGA 59.315 50.000 0.00 0.00 31.72 5.54
2530 2562 7.145932 ACTGTCATAAAACAAATAGAGTGCC 57.854 36.000 0.00 0.00 0.00 5.01
2531 2563 9.543018 GTTACTGTCATAAAACAAATAGAGTGC 57.457 33.333 0.00 0.00 0.00 4.40
2805 2837 0.530288 GGATTGCTTGGGCGCTTAAA 59.470 50.000 7.64 0.00 42.25 1.52
2847 2879 1.743321 CGCCTTCTTTTGGGGCAACA 61.743 55.000 0.00 0.00 45.50 3.33
2894 2926 3.650298 TTCAGGGCAGCAGGGATGC 62.650 63.158 0.00 0.00 44.80 3.91
2896 2928 1.210204 TCTTTCAGGGCAGCAGGGAT 61.210 55.000 0.00 0.00 0.00 3.85
2919 2951 1.511850 CAACGACAACAGAGATGCCA 58.488 50.000 0.00 0.00 0.00 4.92
2957 2989 2.076863 CTTCTTTCGTAGCAACAGGGG 58.923 52.381 0.00 0.00 0.00 4.79
3071 3104 1.663695 CGACCGAGCAACCCATAAAT 58.336 50.000 0.00 0.00 0.00 1.40
3463 3507 2.868583 CTGCTGATTATGACTCCGGTTG 59.131 50.000 0.00 0.00 0.00 3.77
3529 3573 1.105457 ACAGCAAAGCAACAGAAGCA 58.895 45.000 0.00 0.00 0.00 3.91
3532 3576 0.102844 GCCACAGCAAAGCAACAGAA 59.897 50.000 0.00 0.00 39.53 3.02
3537 3581 2.554636 CCGAGCCACAGCAAAGCAA 61.555 57.895 0.00 0.00 43.56 3.91
3543 3587 2.894257 ATGGTTCCGAGCCACAGCA 61.894 57.895 6.05 0.00 43.56 4.41
3548 3592 2.350895 CACCATGGTTCCGAGCCA 59.649 61.111 16.84 6.41 40.68 4.75
3653 3698 3.855255 TCCATCAACTGTTTCCAGACA 57.145 42.857 0.00 0.00 41.50 3.41
3662 3707 3.390639 GAGATCCCAGATCCATCAACTGT 59.609 47.826 0.99 0.00 0.00 3.55
3679 3725 1.740718 GCCAACCTCCAGAACGAGATC 60.741 57.143 0.00 0.00 30.97 2.75
3713 3759 1.261938 ATAGCCTACCGCACCACACA 61.262 55.000 0.00 0.00 41.38 3.72
3743 3789 1.548269 CCTCGACAAAGAAGAGGCTCT 59.452 52.381 12.24 12.24 44.09 4.09
3756 3802 3.691342 CGGAGCAACCCCTCGACA 61.691 66.667 0.00 0.00 34.64 4.35
3812 3858 1.227060 CTCAGTCGCGCATCATCCA 60.227 57.895 8.75 0.00 0.00 3.41
3858 3904 0.846401 CACGGCATAACATCGAGACG 59.154 55.000 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.