Multiple sequence alignment - TraesCS7B01G159700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G159700 chr7B 100.000 4249 0 0 1 4249 217803282 217799034 0.000000e+00 7847.0
1 TraesCS7B01G159700 chr7B 87.707 423 38 11 4 419 651202204 651201789 8.260000e-132 481.0
2 TraesCS7B01G159700 chr7B 90.476 105 7 2 1799 1901 217801378 217801275 7.410000e-28 135.0
3 TraesCS7B01G159700 chr7B 90.476 105 7 2 1905 2008 217801484 217801382 7.410000e-28 135.0
4 TraesCS7B01G159700 chr7D 93.175 2066 64 18 1905 3915 242008124 242006081 0.000000e+00 2963.0
5 TraesCS7B01G159700 chr7D 94.463 1228 53 8 678 1891 242009257 242008031 0.000000e+00 1877.0
6 TraesCS7B01G159700 chr7D 86.525 423 44 10 2 416 19199657 19200074 1.800000e-123 453.0
7 TraesCS7B01G159700 chr7D 92.118 203 13 2 1324 1526 604110059 604109860 2.500000e-72 283.0
8 TraesCS7B01G159700 chr7D 89.593 221 20 2 1309 1528 449805549 449805767 1.160000e-70 278.0
9 TraesCS7B01G159700 chr7D 93.333 135 7 1 3958 4092 242006079 242005947 9.320000e-47 198.0
10 TraesCS7B01G159700 chr7D 91.111 45 4 0 406 450 501894893 501894937 1.280000e-05 62.1
11 TraesCS7B01G159700 chr7A 93.754 1537 61 19 1902 3409 256009357 256010887 0.000000e+00 2274.0
12 TraesCS7B01G159700 chr7A 93.969 1111 52 7 778 1879 256008336 256009440 0.000000e+00 1666.0
13 TraesCS7B01G159700 chr7A 88.511 235 23 4 1296 1528 525545843 525545611 9.000000e-72 281.0
14 TraesCS7B01G159700 chr7A 87.815 238 25 4 1296 1531 437683299 437683064 4.180000e-70 276.0
15 TraesCS7B01G159700 chr7A 92.373 118 9 0 678 795 256008200 256008317 7.310000e-38 169.0
16 TraesCS7B01G159700 chr2A 88.679 424 38 8 2 419 3408082 3408501 3.790000e-140 508.0
17 TraesCS7B01G159700 chr4D 85.809 451 54 8 5 449 461590252 461589806 1.790000e-128 470.0
18 TraesCS7B01G159700 chr4D 91.379 58 4 1 1431 1488 331442519 331442575 1.270000e-10 78.7
19 TraesCS7B01G159700 chr3D 87.059 425 42 10 2 419 435486403 435485985 6.430000e-128 468.0
20 TraesCS7B01G159700 chr3D 86.525 423 45 10 2 419 8560192 8559777 5.010000e-124 455.0
21 TraesCS7B01G159700 chr3D 85.981 428 48 11 1 419 591197582 591197158 8.380000e-122 448.0
22 TraesCS7B01G159700 chr3D 90.950 221 17 2 1309 1528 568318519 568318301 1.160000e-75 294.0
23 TraesCS7B01G159700 chr3D 88.532 218 22 2 1309 1526 80681353 80681139 1.170000e-65 261.0
24 TraesCS7B01G159700 chr3D 84.286 210 29 4 463 670 435485983 435485776 7.200000e-48 202.0
25 TraesCS7B01G159700 chr4B 86.792 424 41 12 3 419 659620806 659621221 3.870000e-125 459.0
26 TraesCS7B01G159700 chr4B 86.957 207 21 6 460 663 348949690 348949893 1.190000e-55 228.0
27 TraesCS7B01G159700 chr4B 97.368 38 0 1 418 454 9944697 9944660 3.550000e-06 63.9
28 TraesCS7B01G159700 chr4B 100.000 34 0 0 417 450 23000266 23000299 3.550000e-06 63.9
29 TraesCS7B01G159700 chr6B 85.579 423 46 12 2 419 191205431 191205843 3.040000e-116 429.0
30 TraesCS7B01G159700 chr6B 84.158 202 31 1 460 661 167026754 167026954 1.210000e-45 195.0
31 TraesCS7B01G159700 chr6B 83.028 218 31 6 460 675 360384781 360384994 4.340000e-45 193.0
32 TraesCS7B01G159700 chr5B 81.955 399 46 21 1151 1532 473742100 473741711 8.870000e-82 315.0
33 TraesCS7B01G159700 chr5A 81.795 390 40 21 1151 1518 495884867 495884487 8.930000e-77 298.0
34 TraesCS7B01G159700 chr5A 87.864 206 25 0 463 668 338390332 338390127 4.240000e-60 243.0
35 TraesCS7B01G159700 chr5A 92.683 41 2 1 404 444 382116910 382116871 1.650000e-04 58.4
36 TraesCS7B01G159700 chr5D 90.308 227 19 3 1294 1518 393877764 393877539 1.160000e-75 294.0
37 TraesCS7B01G159700 chr5D 90.411 73 7 0 1420 1492 378494231 378494159 3.500000e-16 97.1
38 TraesCS7B01G159700 chr6D 90.045 221 19 2 1309 1528 234473683 234473901 2.500000e-72 283.0
39 TraesCS7B01G159700 chr6D 87.745 204 25 0 460 663 7642050 7642253 5.490000e-59 239.0
40 TraesCS7B01G159700 chr6D 86.344 227 21 4 1310 1534 367177778 367177996 5.490000e-59 239.0
41 TraesCS7B01G159700 chr6D 86.036 222 18 4 1309 1518 21515635 21515855 4.270000e-55 226.0
42 TraesCS7B01G159700 chr6D 86.875 160 21 0 1310 1469 282328475 282328634 3.380000e-41 180.0
43 TraesCS7B01G159700 chr6D 100.000 33 0 0 418 450 463623520 463623488 1.280000e-05 62.1
44 TraesCS7B01G159700 chr6A 88.636 220 24 1 1309 1528 616026120 616026338 2.520000e-67 267.0
45 TraesCS7B01G159700 chr6A 92.857 42 1 1 409 450 34304371 34304410 4.590000e-05 60.2
46 TraesCS7B01G159700 chr4A 85.644 202 23 5 463 661 384393777 384393579 1.550000e-49 207.0
47 TraesCS7B01G159700 chr4A 100.000 34 0 0 417 450 586667917 586667950 3.550000e-06 63.9
48 TraesCS7B01G159700 chr1D 84.951 206 28 3 460 663 25871783 25871987 5.570000e-49 206.0
49 TraesCS7B01G159700 chrUn 84.158 202 28 4 463 662 22531687 22531488 4.340000e-45 193.0
50 TraesCS7B01G159700 chr1A 88.050 159 16 3 1370 1528 504787548 504787703 7.260000e-43 185.0
51 TraesCS7B01G159700 chr3B 97.297 37 1 0 414 450 20487504 20487468 3.550000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G159700 chr7B 217799034 217803282 4248 True 2705.666667 7847 93.650667 1 4249 3 chr7B.!!$R2 4248
1 TraesCS7B01G159700 chr7D 242005947 242009257 3310 True 1679.333333 2963 93.657000 678 4092 3 chr7D.!!$R2 3414
2 TraesCS7B01G159700 chr7A 256008200 256010887 2687 False 1369.666667 2274 93.365333 678 3409 3 chr7A.!!$F1 2731
3 TraesCS7B01G159700 chr3D 435485776 435486403 627 True 335.000000 468 85.672500 2 670 2 chr3D.!!$R5 668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 464 0.037303 TGTCGTAGAACGGAGGGAGT 59.963 55.0 0.0 0.0 42.81 3.85 F
1836 1893 0.105964 TGCCAGACTTACAACGCTGT 59.894 50.0 0.0 0.0 39.75 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1907 1964 0.401738 AGCACTACCATTGCACACCT 59.598 50.000 0.0 0.0 42.83 4.00 R
3611 3707 1.071699 TGTTCTAGTGGTTCAGTGGCC 59.928 52.381 0.0 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 7.675062 TGCCATGGTGAATTACTTAAATTTGT 58.325 30.769 14.67 0.00 37.93 2.83
69 70 8.914328 TGTCATGATACATGCACTAAAATTTG 57.086 30.769 0.00 0.00 0.00 2.32
70 71 7.488792 TGTCATGATACATGCACTAAAATTTGC 59.511 33.333 0.00 0.00 39.33 3.68
71 72 7.703621 GTCATGATACATGCACTAAAATTTGCT 59.296 33.333 0.00 0.00 39.62 3.91
140 141 7.675062 TGCCATGGTCAAAATACTAAAATTGT 58.325 30.769 14.67 0.00 0.00 2.71
208 210 8.441312 AACCATGATCCATGAATTAAATTTGC 57.559 30.769 8.38 0.00 43.81 3.68
212 214 9.062524 CATGATCCATGAATTAAATTTGCCATT 57.937 29.630 0.00 0.00 43.81 3.16
285 288 9.953565 AAAAGTAGTTGAATACAATGGTAGCTA 57.046 29.630 0.00 0.00 38.32 3.32
286 289 9.953565 AAAGTAGTTGAATACAATGGTAGCTAA 57.046 29.630 0.00 0.00 38.32 3.09
287 290 8.943909 AGTAGTTGAATACAATGGTAGCTAAC 57.056 34.615 0.40 0.40 38.32 2.34
288 291 8.759782 AGTAGTTGAATACAATGGTAGCTAACT 58.240 33.333 10.78 2.74 38.32 2.24
289 292 9.379791 GTAGTTGAATACAATGGTAGCTAACTT 57.620 33.333 10.78 0.00 38.32 2.66
291 294 9.953565 AGTTGAATACAATGGTAGCTAACTTTA 57.046 29.630 10.78 0.00 38.32 1.85
301 304 7.598759 TGGTAGCTAACTTTAATCTAGGAGG 57.401 40.000 10.78 0.00 0.00 4.30
302 305 7.359849 TGGTAGCTAACTTTAATCTAGGAGGA 58.640 38.462 10.78 0.00 0.00 3.71
333 336 9.836864 ATAGCTGAAACATATCATGACAACTTA 57.163 29.630 0.00 0.00 0.00 2.24
334 337 8.206325 AGCTGAAACATATCATGACAACTTAG 57.794 34.615 0.00 0.00 0.00 2.18
335 338 7.826252 AGCTGAAACATATCATGACAACTTAGT 59.174 33.333 0.00 0.00 0.00 2.24
336 339 7.907045 GCTGAAACATATCATGACAACTTAGTG 59.093 37.037 0.00 0.00 0.00 2.74
337 340 8.846943 TGAAACATATCATGACAACTTAGTGT 57.153 30.769 0.00 0.00 0.00 3.55
369 374 5.555966 TGGCAACTTGAGTGTAACATCATA 58.444 37.500 0.00 0.00 36.83 2.15
376 381 6.936900 ACTTGAGTGTAACATCATAGCAACTT 59.063 34.615 0.00 0.00 41.43 2.66
377 382 7.445402 ACTTGAGTGTAACATCATAGCAACTTT 59.555 33.333 0.00 0.00 41.43 2.66
380 385 6.913170 AGTGTAACATCATAGCAACTTTTGG 58.087 36.000 0.00 0.00 41.43 3.28
382 387 5.476599 TGTAACATCATAGCAACTTTTGGCT 59.523 36.000 0.00 0.00 43.94 4.75
383 388 6.657117 TGTAACATCATAGCAACTTTTGGCTA 59.343 34.615 0.00 0.00 45.75 3.93
424 429 9.781425 AACATATCAATATGAGATCTACTCCCT 57.219 33.333 15.22 0.00 44.34 4.20
425 430 9.781425 ACATATCAATATGAGATCTACTCCCTT 57.219 33.333 15.22 0.00 44.34 3.95
427 432 6.825944 TCAATATGAGATCTACTCCCTTCG 57.174 41.667 0.00 0.00 44.34 3.79
428 433 6.307776 TCAATATGAGATCTACTCCCTTCGT 58.692 40.000 0.00 0.00 44.34 3.85
429 434 6.778069 TCAATATGAGATCTACTCCCTTCGTT 59.222 38.462 0.00 0.00 44.34 3.85
430 435 6.827586 ATATGAGATCTACTCCCTTCGTTC 57.172 41.667 0.00 0.00 44.34 3.95
431 436 2.943690 TGAGATCTACTCCCTTCGTTCG 59.056 50.000 0.00 0.00 44.34 3.95
432 437 2.291190 GAGATCTACTCCCTTCGTTCGG 59.709 54.545 0.00 0.00 39.53 4.30
433 438 2.092538 AGATCTACTCCCTTCGTTCGGA 60.093 50.000 0.00 0.00 0.00 4.55
434 439 2.205022 TCTACTCCCTTCGTTCGGAA 57.795 50.000 0.00 0.00 0.00 4.30
435 440 2.731572 TCTACTCCCTTCGTTCGGAAT 58.268 47.619 0.00 0.00 33.26 3.01
436 441 3.094572 TCTACTCCCTTCGTTCGGAATT 58.905 45.455 0.00 0.00 33.26 2.17
437 442 4.272489 TCTACTCCCTTCGTTCGGAATTA 58.728 43.478 0.00 0.00 33.26 1.40
438 443 3.242549 ACTCCCTTCGTTCGGAATTAC 57.757 47.619 0.00 0.00 33.26 1.89
439 444 2.830321 ACTCCCTTCGTTCGGAATTACT 59.170 45.455 0.00 0.00 33.26 2.24
440 445 3.260128 ACTCCCTTCGTTCGGAATTACTT 59.740 43.478 0.00 0.00 33.26 2.24
441 446 3.592059 TCCCTTCGTTCGGAATTACTTG 58.408 45.455 0.00 0.00 33.26 3.16
442 447 3.007182 TCCCTTCGTTCGGAATTACTTGT 59.993 43.478 0.00 0.00 33.26 3.16
443 448 3.370061 CCCTTCGTTCGGAATTACTTGTC 59.630 47.826 0.00 0.00 33.26 3.18
444 449 3.060363 CCTTCGTTCGGAATTACTTGTCG 59.940 47.826 0.00 0.00 33.26 4.35
445 450 3.287312 TCGTTCGGAATTACTTGTCGT 57.713 42.857 0.00 0.00 0.00 4.34
446 451 4.418013 TCGTTCGGAATTACTTGTCGTA 57.582 40.909 0.00 0.00 0.00 3.43
447 452 4.406069 TCGTTCGGAATTACTTGTCGTAG 58.594 43.478 0.00 0.00 0.00 3.51
448 453 4.154015 TCGTTCGGAATTACTTGTCGTAGA 59.846 41.667 0.00 0.00 0.00 2.59
449 454 4.853196 CGTTCGGAATTACTTGTCGTAGAA 59.147 41.667 0.00 0.00 39.69 2.10
450 455 5.219914 CGTTCGGAATTACTTGTCGTAGAAC 60.220 44.000 0.00 0.00 39.69 3.01
451 456 4.406069 TCGGAATTACTTGTCGTAGAACG 58.594 43.478 0.00 0.00 44.19 3.95
452 457 3.545078 CGGAATTACTTGTCGTAGAACGG 59.455 47.826 0.00 0.00 42.81 4.44
453 458 4.672542 CGGAATTACTTGTCGTAGAACGGA 60.673 45.833 0.00 0.00 42.81 4.69
454 459 4.797349 GGAATTACTTGTCGTAGAACGGAG 59.203 45.833 0.00 0.00 42.81 4.63
455 460 3.837213 TTACTTGTCGTAGAACGGAGG 57.163 47.619 0.00 0.00 42.81 4.30
456 461 0.886563 ACTTGTCGTAGAACGGAGGG 59.113 55.000 0.00 0.00 42.81 4.30
457 462 1.171308 CTTGTCGTAGAACGGAGGGA 58.829 55.000 0.00 0.00 42.81 4.20
458 463 1.132643 CTTGTCGTAGAACGGAGGGAG 59.867 57.143 0.00 0.00 42.81 4.30
459 464 0.037303 TGTCGTAGAACGGAGGGAGT 59.963 55.000 0.00 0.00 42.81 3.85
460 465 1.278985 TGTCGTAGAACGGAGGGAGTA 59.721 52.381 0.00 0.00 42.81 2.59
461 466 2.092753 TGTCGTAGAACGGAGGGAGTAT 60.093 50.000 0.00 0.00 42.81 2.12
499 504 7.178712 GTCGAGACGGATTTAATGATGAAAT 57.821 36.000 0.00 0.00 0.00 2.17
500 505 7.630924 GTCGAGACGGATTTAATGATGAAATT 58.369 34.615 0.00 0.00 0.00 1.82
501 506 7.584123 GTCGAGACGGATTTAATGATGAAATTG 59.416 37.037 0.00 0.00 0.00 2.32
504 509 8.469309 AGACGGATTTAATGATGAAATTGGAT 57.531 30.769 0.00 0.00 0.00 3.41
586 591 9.865321 AAAAATTCCACTGATGTCATCTAATTG 57.135 29.630 13.90 5.70 0.00 2.32
587 592 8.812513 AAATTCCACTGATGTCATCTAATTGA 57.187 30.769 13.90 2.28 0.00 2.57
588 593 8.991783 AATTCCACTGATGTCATCTAATTGAT 57.008 30.769 13.90 0.15 35.40 2.57
605 610 9.407380 TCTAATTGATGTGGCAAAATGTATAGT 57.593 29.630 0.00 0.00 0.00 2.12
609 614 9.970395 ATTGATGTGGCAAAATGTATAGTAATG 57.030 29.630 0.00 0.00 0.00 1.90
610 615 7.939782 TGATGTGGCAAAATGTATAGTAATGG 58.060 34.615 0.00 0.00 0.00 3.16
611 616 7.777440 TGATGTGGCAAAATGTATAGTAATGGA 59.223 33.333 0.00 0.00 0.00 3.41
612 617 7.566760 TGTGGCAAAATGTATAGTAATGGAG 57.433 36.000 0.00 0.00 0.00 3.86
613 618 6.545666 TGTGGCAAAATGTATAGTAATGGAGG 59.454 38.462 0.00 0.00 0.00 4.30
614 619 6.546034 GTGGCAAAATGTATAGTAATGGAGGT 59.454 38.462 0.00 0.00 0.00 3.85
615 620 6.545666 TGGCAAAATGTATAGTAATGGAGGTG 59.454 38.462 0.00 0.00 0.00 4.00
616 621 6.546034 GGCAAAATGTATAGTAATGGAGGTGT 59.454 38.462 0.00 0.00 0.00 4.16
617 622 7.068226 GGCAAAATGTATAGTAATGGAGGTGTT 59.932 37.037 0.00 0.00 0.00 3.32
618 623 8.466798 GCAAAATGTATAGTAATGGAGGTGTTT 58.533 33.333 0.00 0.00 0.00 2.83
619 624 9.787532 CAAAATGTATAGTAATGGAGGTGTTTG 57.212 33.333 0.00 0.00 0.00 2.93
620 625 8.519799 AAATGTATAGTAATGGAGGTGTTTGG 57.480 34.615 0.00 0.00 0.00 3.28
621 626 6.877668 TGTATAGTAATGGAGGTGTTTGGA 57.122 37.500 0.00 0.00 0.00 3.53
622 627 6.646267 TGTATAGTAATGGAGGTGTTTGGAC 58.354 40.000 0.00 0.00 0.00 4.02
623 628 3.434940 AGTAATGGAGGTGTTTGGACC 57.565 47.619 0.00 0.00 36.09 4.46
624 629 2.714250 AGTAATGGAGGTGTTTGGACCA 59.286 45.455 0.00 0.00 38.63 4.02
625 630 2.999185 AATGGAGGTGTTTGGACCAT 57.001 45.000 0.00 0.00 42.17 3.55
626 631 2.220653 ATGGAGGTGTTTGGACCATG 57.779 50.000 0.00 0.00 39.45 3.66
627 632 0.850100 TGGAGGTGTTTGGACCATGT 59.150 50.000 0.00 0.00 38.63 3.21
628 633 1.216678 TGGAGGTGTTTGGACCATGTT 59.783 47.619 0.00 0.00 38.63 2.71
629 634 1.613437 GGAGGTGTTTGGACCATGTTG 59.387 52.381 0.00 0.00 38.63 3.33
630 635 1.000274 GAGGTGTTTGGACCATGTTGC 60.000 52.381 0.00 0.00 38.63 4.17
631 636 1.039856 GGTGTTTGGACCATGTTGCT 58.960 50.000 0.00 0.00 35.88 3.91
632 637 1.412343 GGTGTTTGGACCATGTTGCTT 59.588 47.619 0.00 0.00 35.88 3.91
633 638 2.545742 GGTGTTTGGACCATGTTGCTTC 60.546 50.000 0.00 0.00 35.88 3.86
634 639 2.100584 GTGTTTGGACCATGTTGCTTCA 59.899 45.455 0.00 0.00 0.00 3.02
635 640 2.964464 TGTTTGGACCATGTTGCTTCAT 59.036 40.909 0.00 0.00 0.00 2.57
636 641 3.243805 TGTTTGGACCATGTTGCTTCATG 60.244 43.478 12.43 12.43 43.14 3.07
637 642 0.889994 TGGACCATGTTGCTTCATGC 59.110 50.000 13.47 4.41 42.44 4.06
638 643 0.174162 GGACCATGTTGCTTCATGCC 59.826 55.000 13.47 8.50 42.44 4.40
639 644 0.889994 GACCATGTTGCTTCATGCCA 59.110 50.000 13.47 0.00 42.44 4.92
640 645 0.604578 ACCATGTTGCTTCATGCCAC 59.395 50.000 13.47 0.00 42.44 5.01
644 649 1.330234 TGTTGCTTCATGCCACATGT 58.670 45.000 7.40 0.00 41.54 3.21
645 650 1.000052 TGTTGCTTCATGCCACATGTG 60.000 47.619 19.31 19.31 41.54 3.21
646 651 1.000060 GTTGCTTCATGCCACATGTGT 60.000 47.619 23.79 3.20 42.00 3.72
647 652 0.599060 TGCTTCATGCCACATGTGTG 59.401 50.000 23.79 15.68 45.23 3.82
648 653 1.818522 TGCTTCATGCCACATGTGTGA 60.819 47.619 23.79 17.66 45.30 3.58
649 654 3.710389 TGCTTCATGCCACATGTGTGAG 61.710 50.000 23.79 14.52 45.30 3.51
650 655 5.939898 TGCTTCATGCCACATGTGTGAGA 62.940 47.826 23.79 13.08 45.30 3.27
662 667 6.748333 ACATGTGTGAGACTTATCATTTGG 57.252 37.500 0.00 0.00 0.00 3.28
663 668 5.124457 ACATGTGTGAGACTTATCATTTGGC 59.876 40.000 0.00 0.00 0.00 4.52
664 669 4.910195 TGTGTGAGACTTATCATTTGGCT 58.090 39.130 0.00 0.00 0.00 4.75
665 670 5.316167 TGTGTGAGACTTATCATTTGGCTT 58.684 37.500 0.00 0.00 0.00 4.35
666 671 5.769662 TGTGTGAGACTTATCATTTGGCTTT 59.230 36.000 0.00 0.00 0.00 3.51
667 672 6.265196 TGTGTGAGACTTATCATTTGGCTTTT 59.735 34.615 0.00 0.00 0.00 2.27
668 673 7.147976 GTGTGAGACTTATCATTTGGCTTTTT 58.852 34.615 0.00 0.00 0.00 1.94
691 696 3.312973 TCTTTTGAACCACGCGTGTTTAT 59.687 39.130 34.81 19.06 0.00 1.40
694 699 5.359716 TTTGAACCACGCGTGTTTATATT 57.640 34.783 34.81 19.23 0.00 1.28
697 702 4.451435 TGAACCACGCGTGTTTATATTTGA 59.549 37.500 34.81 9.74 0.00 2.69
1020 1063 2.922740 TGGTACGCTCCTTGTCTTTT 57.077 45.000 0.00 0.00 0.00 2.27
1057 1100 3.306973 TCATGCAAAATCTCGCTTCGTAG 59.693 43.478 0.00 0.00 0.00 3.51
1064 1107 0.390866 TCTCGCTTCGTAGTCGGAGT 60.391 55.000 6.18 0.00 43.90 3.85
1084 1127 1.017387 GGGGATGTTTCGTGATGCTC 58.983 55.000 0.00 0.00 0.00 4.26
1121 1164 3.536570 GGGCTACTTCACTTGGATCTTC 58.463 50.000 0.00 0.00 0.00 2.87
1126 1169 0.606096 TTCACTTGGATCTTCGCCGA 59.394 50.000 0.00 0.00 0.00 5.54
1152 1195 0.855349 GCGAGCCACTGATTATCGTG 59.145 55.000 9.16 9.16 35.87 4.35
1247 1290 1.374758 CCGCTCGCTGAAACCTCTT 60.375 57.895 0.00 0.00 0.00 2.85
1258 1301 3.638627 CTGAAACCTCTTTGCTTCCCTTT 59.361 43.478 0.00 0.00 0.00 3.11
1270 1313 2.414691 GCTTCCCTTTGATTCGTTCTGC 60.415 50.000 0.00 0.00 0.00 4.26
1344 1387 1.595993 CCCGCTGTTCGAGAAGAGGA 61.596 60.000 17.19 0.00 41.67 3.71
1364 1407 2.098293 GAAGCAATTCGGCATCGGT 58.902 52.632 0.00 0.00 36.95 4.69
1640 1693 8.296713 TGCAACAGACTCAAATCTTAAATAACC 58.703 33.333 0.00 0.00 0.00 2.85
1653 1707 7.074653 TCTTAAATAACCTTCTCACTGTGGT 57.925 36.000 8.11 0.00 0.00 4.16
1659 1713 5.568620 AACCTTCTCACTGTGGTTCTATT 57.431 39.130 8.11 0.00 38.26 1.73
1782 1839 1.340991 GGCCTTGGTAGCATCTCCAAA 60.341 52.381 0.00 0.00 42.14 3.28
1820 1877 2.485122 GCGTGCAATGGTAGTGCC 59.515 61.111 0.00 0.00 41.49 5.01
1831 1888 3.396260 TGGTAGTGCCAGACTTACAAC 57.604 47.619 0.00 0.00 43.61 3.32
1832 1889 2.288579 TGGTAGTGCCAGACTTACAACG 60.289 50.000 0.00 0.00 43.61 4.10
1833 1890 1.725164 GTAGTGCCAGACTTACAACGC 59.275 52.381 0.00 0.00 35.96 4.84
1834 1891 0.393077 AGTGCCAGACTTACAACGCT 59.607 50.000 0.00 0.00 0.00 5.07
1835 1892 0.512952 GTGCCAGACTTACAACGCTG 59.487 55.000 0.00 0.00 0.00 5.18
1836 1893 0.105964 TGCCAGACTTACAACGCTGT 59.894 50.000 0.00 0.00 39.75 4.40
1837 1894 0.512952 GCCAGACTTACAACGCTGTG 59.487 55.000 0.71 0.00 36.96 3.66
1838 1895 1.872237 GCCAGACTTACAACGCTGTGA 60.872 52.381 0.71 0.00 36.96 3.58
1839 1896 2.688507 CCAGACTTACAACGCTGTGAT 58.311 47.619 0.71 0.00 36.96 3.06
1840 1897 2.413112 CCAGACTTACAACGCTGTGATG 59.587 50.000 0.71 0.00 36.96 3.07
1841 1898 3.059884 CAGACTTACAACGCTGTGATGT 58.940 45.455 9.10 9.10 36.96 3.06
1842 1899 3.121944 CAGACTTACAACGCTGTGATGTC 59.878 47.826 7.41 7.12 36.96 3.06
1843 1900 3.057019 GACTTACAACGCTGTGATGTCA 58.943 45.455 7.41 0.00 36.96 3.58
1844 1901 3.462982 ACTTACAACGCTGTGATGTCAA 58.537 40.909 7.41 1.63 36.96 3.18
1845 1902 4.065088 ACTTACAACGCTGTGATGTCAAT 58.935 39.130 7.41 0.00 36.96 2.57
1846 1903 5.234752 ACTTACAACGCTGTGATGTCAATA 58.765 37.500 7.41 0.00 36.96 1.90
1847 1904 5.120208 ACTTACAACGCTGTGATGTCAATAC 59.880 40.000 7.41 0.00 36.96 1.89
1848 1905 3.398406 ACAACGCTGTGATGTCAATACA 58.602 40.909 0.00 0.00 35.49 2.29
1849 1906 5.175127 TACAACGCTGTGATGTCAATACAT 58.825 37.500 7.41 0.00 41.88 2.29
1862 1919 6.951062 TGTCAATACATCCAAACTGTTTGA 57.049 33.333 29.47 17.79 43.26 2.69
1863 1920 7.523293 TGTCAATACATCCAAACTGTTTGAT 57.477 32.000 29.47 18.96 43.26 2.57
1864 1921 7.369607 TGTCAATACATCCAAACTGTTTGATG 58.630 34.615 29.47 27.46 43.26 3.07
1865 1922 7.230309 TGTCAATACATCCAAACTGTTTGATGA 59.770 33.333 30.22 22.87 43.26 2.92
1866 1923 8.246180 GTCAATACATCCAAACTGTTTGATGAT 58.754 33.333 30.22 23.64 43.26 2.45
1867 1924 8.805175 TCAATACATCCAAACTGTTTGATGATT 58.195 29.630 30.22 24.34 43.26 2.57
1868 1925 8.865978 CAATACATCCAAACTGTTTGATGATTG 58.134 33.333 30.22 27.47 43.26 2.67
1869 1926 6.409524 ACATCCAAACTGTTTGATGATTGT 57.590 33.333 30.22 22.83 43.26 2.71
1870 1927 6.819284 ACATCCAAACTGTTTGATGATTGTT 58.181 32.000 30.22 17.25 43.26 2.83
1871 1928 7.274447 ACATCCAAACTGTTTGATGATTGTTT 58.726 30.769 30.22 16.82 43.26 2.83
1872 1929 8.420222 ACATCCAAACTGTTTGATGATTGTTTA 58.580 29.630 30.22 11.78 43.26 2.01
1873 1930 9.426837 CATCCAAACTGTTTGATGATTGTTTAT 57.573 29.630 29.47 4.78 43.26 1.40
1899 1956 7.571089 TTCTTTGATGAATTTTCGCTTGATG 57.429 32.000 0.00 0.00 0.00 3.07
1900 1957 6.680810 TCTTTGATGAATTTTCGCTTGATGT 58.319 32.000 0.00 0.00 0.00 3.06
1901 1958 6.803320 TCTTTGATGAATTTTCGCTTGATGTC 59.197 34.615 0.00 0.00 0.00 3.06
1902 1959 5.625921 TGATGAATTTTCGCTTGATGTCA 57.374 34.783 0.00 0.00 0.00 3.58
1903 1960 6.011476 TGATGAATTTTCGCTTGATGTCAA 57.989 33.333 0.00 0.00 0.00 3.18
1904 1961 6.623486 TGATGAATTTTCGCTTGATGTCAAT 58.377 32.000 0.00 0.00 35.02 2.57
1905 1962 7.092079 TGATGAATTTTCGCTTGATGTCAATT 58.908 30.769 0.00 0.00 35.02 2.32
1906 1963 6.693761 TGAATTTTCGCTTGATGTCAATTG 57.306 33.333 0.00 0.00 35.02 2.32
1907 1964 6.445475 TGAATTTTCGCTTGATGTCAATTGA 58.555 32.000 3.38 3.38 35.02 2.57
1908 1965 6.583427 TGAATTTTCGCTTGATGTCAATTGAG 59.417 34.615 8.80 0.00 35.02 3.02
1909 1966 4.424061 TTTCGCTTGATGTCAATTGAGG 57.576 40.909 8.80 0.00 35.02 3.86
1910 1967 3.057969 TCGCTTGATGTCAATTGAGGT 57.942 42.857 8.80 0.00 35.02 3.85
1911 1968 2.743664 TCGCTTGATGTCAATTGAGGTG 59.256 45.455 8.80 2.65 35.02 4.00
1912 1969 2.485426 CGCTTGATGTCAATTGAGGTGT 59.515 45.455 8.80 0.00 35.02 4.16
1913 1970 3.668757 CGCTTGATGTCAATTGAGGTGTG 60.669 47.826 8.80 0.00 35.02 3.82
1914 1971 3.829948 CTTGATGTCAATTGAGGTGTGC 58.170 45.455 8.80 0.00 35.02 4.57
1915 1972 2.861274 TGATGTCAATTGAGGTGTGCA 58.139 42.857 8.80 2.32 0.00 4.57
1916 1973 3.220940 TGATGTCAATTGAGGTGTGCAA 58.779 40.909 8.80 0.00 0.00 4.08
1917 1974 3.827876 TGATGTCAATTGAGGTGTGCAAT 59.172 39.130 8.80 0.00 37.56 3.56
1918 1975 3.646611 TGTCAATTGAGGTGTGCAATG 57.353 42.857 8.80 0.00 36.20 2.82
1919 1976 2.296752 TGTCAATTGAGGTGTGCAATGG 59.703 45.455 8.80 0.00 36.20 3.16
1920 1977 2.297033 GTCAATTGAGGTGTGCAATGGT 59.703 45.455 8.80 0.00 36.20 3.55
1921 1978 3.505680 GTCAATTGAGGTGTGCAATGGTA 59.494 43.478 8.80 0.00 36.20 3.25
1922 1979 3.758023 TCAATTGAGGTGTGCAATGGTAG 59.242 43.478 3.38 0.00 36.20 3.18
1923 1980 2.949177 TTGAGGTGTGCAATGGTAGT 57.051 45.000 0.00 0.00 0.00 2.73
1924 1981 2.183478 TGAGGTGTGCAATGGTAGTG 57.817 50.000 0.00 0.00 0.00 2.74
1934 1991 5.104941 TGTGCAATGGTAGTGCTAGACTTAT 60.105 40.000 0.00 0.00 42.69 1.73
2060 2119 2.074113 TTATGTGCAGGGCCACCACA 62.074 55.000 24.95 24.95 42.87 4.17
2210 2279 5.070001 CCCAGTTTGTCTTGTCAAGGATTA 58.930 41.667 12.66 0.00 0.00 1.75
2239 2308 5.362556 TCAAACAAAGACTGCTAAGATGC 57.637 39.130 0.00 0.00 0.00 3.91
2267 2336 5.671493 ACCGATCCCAACTAGTTTCATAAG 58.329 41.667 5.07 0.00 0.00 1.73
2296 2365 6.663944 AAAGCTAATCCGTTGAACTGTATC 57.336 37.500 0.00 0.00 0.00 2.24
2374 2443 7.373617 TCTTATGGCATTGTGGATAGTTCTA 57.626 36.000 4.78 0.00 0.00 2.10
2438 2520 5.112686 CCCTGCTATTCTCTGTTAACTGAC 58.887 45.833 10.80 2.13 0.00 3.51
2454 2536 7.393796 TGTTAACTGACCCAACTTTCAAACTTA 59.606 33.333 7.22 0.00 0.00 2.24
2560 2642 1.377994 CCAGGCTGAAGCTGAAGGT 59.622 57.895 17.94 0.00 41.70 3.50
2652 2734 1.135575 GGCATGTTCTTCTGCTTTCCG 60.136 52.381 0.00 0.00 38.45 4.30
2683 2765 2.033049 GCATTGGCAGCTGATAGACTTG 59.967 50.000 20.43 6.00 40.72 3.16
2687 2769 2.093816 TGGCAGCTGATAGACTTGTCTG 60.094 50.000 20.43 0.00 0.00 3.51
3055 3137 4.402155 TGTGGGGCTATGATTTCATTTGTC 59.598 41.667 0.00 0.00 37.76 3.18
3075 3161 7.595819 TTGTCTGTATTGGTTTCCATCTTTT 57.404 32.000 0.00 0.00 31.53 2.27
3088 3174 7.657354 GGTTTCCATCTTTTCTGCTTATTTGTT 59.343 33.333 0.00 0.00 0.00 2.83
3107 3193 5.927954 TGTTGACTAACCGTTTATTGACC 57.072 39.130 0.00 0.00 35.92 4.02
3114 3200 6.243148 ACTAACCGTTTATTGACCAATTCCT 58.757 36.000 0.17 0.00 32.50 3.36
3311 3397 0.536915 TGTGCAAGCATACTGTGGCA 60.537 50.000 0.00 0.00 0.00 4.92
3351 3437 8.824159 TTGAAAGTCATTTTTGTTTGTCTGAA 57.176 26.923 0.00 0.00 0.00 3.02
3448 3535 0.663269 GGCTGCCAAACGTTAAGTGC 60.663 55.000 15.17 2.68 0.00 4.40
3451 3538 1.333619 CTGCCAAACGTTAAGTGCAGT 59.666 47.619 22.64 0.00 40.46 4.40
3452 3539 2.546368 CTGCCAAACGTTAAGTGCAGTA 59.454 45.455 22.64 1.27 40.46 2.74
3472 3559 5.525378 CAGTATATTCTTCAGACAAGGGTGC 59.475 44.000 0.00 0.00 0.00 5.01
3487 3574 2.158475 AGGGTGCCAAAACATTCAGAGA 60.158 45.455 0.00 0.00 0.00 3.10
3492 3579 5.397326 GTGCCAAAACATTCAGAGATCTTC 58.603 41.667 0.00 0.00 0.00 2.87
3495 3582 5.182760 GCCAAAACATTCAGAGATCTTCAGT 59.817 40.000 0.00 0.00 0.00 3.41
3512 3599 2.897969 TCAGTTAGGGTCCTGACAACTC 59.102 50.000 13.31 0.00 35.36 3.01
3518 3605 1.679898 GTCCTGACAACTCCCCAGG 59.320 63.158 0.00 0.00 46.64 4.45
3576 3663 5.258456 GGAAAACCTTCCGGATAAAATCC 57.742 43.478 4.15 5.95 41.89 3.01
3594 3690 0.038166 CCCAAGTTGCTGCTTCCCTA 59.962 55.000 0.00 0.00 0.00 3.53
3611 3707 1.070758 CCTAGGTGATCCATTGGACCG 59.929 57.143 7.76 0.00 32.98 4.79
3659 3755 3.315596 TCTCCTCGTACTCTAGGGATGA 58.684 50.000 0.00 0.00 33.40 2.92
3662 3758 3.458857 TCCTCGTACTCTAGGGATGAGTT 59.541 47.826 0.00 0.00 41.45 3.01
3663 3759 4.079901 TCCTCGTACTCTAGGGATGAGTTT 60.080 45.833 0.00 0.00 41.45 2.66
3664 3760 4.276431 CCTCGTACTCTAGGGATGAGTTTC 59.724 50.000 0.00 0.00 41.45 2.78
3665 3761 4.205587 TCGTACTCTAGGGATGAGTTTCC 58.794 47.826 0.00 0.00 41.45 3.13
3727 3835 0.957888 GGAGAGGGCACTGCTGTTTC 60.958 60.000 0.00 0.00 0.00 2.78
3728 3836 0.036022 GAGAGGGCACTGCTGTTTCT 59.964 55.000 0.00 0.00 0.00 2.52
3729 3837 0.036022 AGAGGGCACTGCTGTTTCTC 59.964 55.000 0.00 2.00 0.00 2.87
3766 3874 2.230660 CAGGGTGGTCCTCAGTTTTTC 58.769 52.381 0.00 0.00 46.12 2.29
3773 3881 6.127281 GGGTGGTCCTCAGTTTTTCTTTAAAA 60.127 38.462 0.00 0.00 33.41 1.52
3919 4040 9.383519 GAAACTGGTTTCTATCAATCATACTGA 57.616 33.333 16.17 0.00 44.03 3.41
3920 4041 8.723942 AACTGGTTTCTATCAATCATACTGAC 57.276 34.615 0.00 0.00 0.00 3.51
3921 4042 7.851228 ACTGGTTTCTATCAATCATACTGACA 58.149 34.615 0.00 0.00 0.00 3.58
3922 4043 7.766278 ACTGGTTTCTATCAATCATACTGACAC 59.234 37.037 0.00 0.00 0.00 3.67
3923 4044 7.619965 TGGTTTCTATCAATCATACTGACACA 58.380 34.615 0.00 0.00 0.00 3.72
3924 4045 8.100164 TGGTTTCTATCAATCATACTGACACAA 58.900 33.333 0.00 0.00 0.00 3.33
3925 4046 8.391106 GGTTTCTATCAATCATACTGACACAAC 58.609 37.037 0.00 0.00 0.00 3.32
3926 4047 9.155975 GTTTCTATCAATCATACTGACACAACT 57.844 33.333 0.00 0.00 0.00 3.16
3927 4048 8.707938 TTCTATCAATCATACTGACACAACTG 57.292 34.615 0.00 0.00 0.00 3.16
3928 4049 8.066612 TCTATCAATCATACTGACACAACTGA 57.933 34.615 0.00 0.00 0.00 3.41
3929 4050 8.531146 TCTATCAATCATACTGACACAACTGAA 58.469 33.333 0.00 0.00 0.00 3.02
3930 4051 6.785488 TCAATCATACTGACACAACTGAAC 57.215 37.500 0.00 0.00 0.00 3.18
3931 4052 6.287525 TCAATCATACTGACACAACTGAACA 58.712 36.000 0.00 0.00 0.00 3.18
3932 4053 6.936335 TCAATCATACTGACACAACTGAACAT 59.064 34.615 0.00 0.00 0.00 2.71
3933 4054 8.093927 TCAATCATACTGACACAACTGAACATA 58.906 33.333 0.00 0.00 0.00 2.29
3934 4055 8.720562 CAATCATACTGACACAACTGAACATAA 58.279 33.333 0.00 0.00 0.00 1.90
3935 4056 8.846943 ATCATACTGACACAACTGAACATAAA 57.153 30.769 0.00 0.00 0.00 1.40
3936 4057 8.846943 TCATACTGACACAACTGAACATAAAT 57.153 30.769 0.00 0.00 0.00 1.40
3937 4058 9.283768 TCATACTGACACAACTGAACATAAATT 57.716 29.630 0.00 0.00 0.00 1.82
3966 4087 2.131972 TGTGTGTTCGTGCTCATGTAC 58.868 47.619 0.00 0.00 0.00 2.90
3997 4118 6.096846 AGTGACAACAAGCAAATAGAAAACCT 59.903 34.615 0.00 0.00 0.00 3.50
3999 4120 7.918562 GTGACAACAAGCAAATAGAAAACCTTA 59.081 33.333 0.00 0.00 0.00 2.69
4000 4121 8.470805 TGACAACAAGCAAATAGAAAACCTTAA 58.529 29.630 0.00 0.00 0.00 1.85
4031 4152 4.654091 AATGAGGAATGGTAAATTGGCG 57.346 40.909 0.00 0.00 0.00 5.69
4059 4180 4.588899 CTGGAGATGGTACCACAAATCAA 58.411 43.478 19.09 5.61 32.44 2.57
4085 4206 0.523072 CCTAGTGCCACAATGTGCAC 59.477 55.000 23.45 23.45 39.20 4.57
4088 4209 0.752743 AGTGCCACAATGTGCACTGT 60.753 50.000 28.75 12.27 43.43 3.55
4092 4213 1.575922 CACAATGTGCACTGTCGGG 59.424 57.895 19.41 0.99 0.00 5.14
4093 4214 1.600636 ACAATGTGCACTGTCGGGG 60.601 57.895 19.41 3.27 0.00 5.73
4094 4215 1.600636 CAATGTGCACTGTCGGGGT 60.601 57.895 19.41 0.00 0.00 4.95
4095 4216 1.600636 AATGTGCACTGTCGGGGTG 60.601 57.895 19.41 0.00 37.70 4.61
4096 4217 2.050836 AATGTGCACTGTCGGGGTGA 62.051 55.000 19.41 0.00 36.89 4.02
4097 4218 2.050836 ATGTGCACTGTCGGGGTGAA 62.051 55.000 19.41 0.00 36.89 3.18
4098 4219 2.110213 TGCACTGTCGGGGTGAAC 59.890 61.111 7.33 0.00 36.89 3.18
4099 4220 3.041940 GCACTGTCGGGGTGAACG 61.042 66.667 7.33 0.00 36.89 3.95
4100 4221 2.732016 CACTGTCGGGGTGAACGA 59.268 61.111 0.00 0.00 36.89 3.85
4105 4226 2.336088 TCGGGGTGAACGACGAAC 59.664 61.111 0.00 0.00 35.12 3.95
4106 4227 2.195567 TCGGGGTGAACGACGAACT 61.196 57.895 0.00 0.00 35.12 3.01
4107 4228 0.888736 TCGGGGTGAACGACGAACTA 60.889 55.000 0.00 0.00 35.12 2.24
4108 4229 0.730494 CGGGGTGAACGACGAACTAC 60.730 60.000 0.00 0.00 0.00 2.73
4109 4230 0.600057 GGGGTGAACGACGAACTACT 59.400 55.000 0.00 0.00 0.00 2.57
4110 4231 1.402062 GGGGTGAACGACGAACTACTC 60.402 57.143 0.00 0.00 0.00 2.59
4111 4232 1.538950 GGGTGAACGACGAACTACTCT 59.461 52.381 0.00 0.00 0.00 3.24
4112 4233 2.030451 GGGTGAACGACGAACTACTCTT 60.030 50.000 0.00 0.00 0.00 2.85
4113 4234 3.551659 GGGTGAACGACGAACTACTCTTT 60.552 47.826 0.00 0.00 0.00 2.52
4114 4235 4.047142 GGTGAACGACGAACTACTCTTTT 58.953 43.478 0.00 0.00 0.00 2.27
4115 4236 4.505556 GGTGAACGACGAACTACTCTTTTT 59.494 41.667 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.041409 TGGCAATTTTAGTTTCTGGTTCATGA 59.959 34.615 0.00 0.00 0.00 3.07
46 47 7.774134 AGCAAATTTTAGTGCATGTATCATGA 58.226 30.769 12.98 0.00 43.42 3.07
93 94 8.585881 TGGCAGATCTAGTATTTTACCATAGAC 58.414 37.037 0.00 0.00 0.00 2.59
96 97 8.321353 CCATGGCAGATCTAGTATTTTACCATA 58.679 37.037 0.00 0.00 33.05 2.74
100 101 7.217200 TGACCATGGCAGATCTAGTATTTTAC 58.783 38.462 13.04 0.00 0.00 2.01
103 104 5.894298 TGACCATGGCAGATCTAGTATTT 57.106 39.130 13.04 0.00 0.00 1.40
113 114 7.716799 ATTTTAGTATTTTGACCATGGCAGA 57.283 32.000 13.04 3.36 0.00 4.26
114 115 7.818930 ACAATTTTAGTATTTTGACCATGGCAG 59.181 33.333 13.04 0.00 0.00 4.85
183 184 7.499895 GGCAAATTTAATTCATGGATCATGGTT 59.500 33.333 7.88 6.43 41.66 3.67
184 185 6.993902 GGCAAATTTAATTCATGGATCATGGT 59.006 34.615 7.88 0.00 41.66 3.55
249 251 9.337396 TGTATTCAACTACTTTTCATGACAAGT 57.663 29.630 25.92 25.92 37.08 3.16
253 255 9.559958 CCATTGTATTCAACTACTTTTCATGAC 57.440 33.333 0.00 0.00 36.33 3.06
257 259 8.726988 GCTACCATTGTATTCAACTACTTTTCA 58.273 33.333 0.00 0.00 36.33 2.69
263 265 8.943909 AGTTAGCTACCATTGTATTCAACTAC 57.056 34.615 0.00 0.00 36.33 2.73
308 311 9.317936 CTAAGTTGTCATGATATGTTTCAGCTA 57.682 33.333 0.00 0.00 0.00 3.32
311 314 8.939929 ACACTAAGTTGTCATGATATGTTTCAG 58.060 33.333 0.00 0.00 0.00 3.02
334 337 5.238650 ACTCAAGTTGCCATAGTGTTTACAC 59.761 40.000 4.87 4.87 46.77 2.90
335 338 5.238432 CACTCAAGTTGCCATAGTGTTTACA 59.762 40.000 12.18 0.00 34.28 2.41
336 339 5.238650 ACACTCAAGTTGCCATAGTGTTTAC 59.761 40.000 17.78 0.00 46.38 2.01
337 340 5.373222 ACACTCAAGTTGCCATAGTGTTTA 58.627 37.500 17.78 0.00 46.38 2.01
355 360 7.023575 CCAAAAGTTGCTATGATGTTACACTC 58.976 38.462 0.00 0.00 0.00 3.51
412 417 2.092538 TCCGAACGAAGGGAGTAGATCT 60.093 50.000 0.00 0.00 0.00 2.75
419 424 3.521947 AGTAATTCCGAACGAAGGGAG 57.478 47.619 0.00 0.00 32.78 4.30
420 425 3.007182 ACAAGTAATTCCGAACGAAGGGA 59.993 43.478 0.00 0.00 32.78 4.20
421 426 3.332034 ACAAGTAATTCCGAACGAAGGG 58.668 45.455 0.00 0.00 32.78 3.95
422 427 3.060363 CGACAAGTAATTCCGAACGAAGG 59.940 47.826 0.00 0.00 32.78 3.46
423 428 3.671928 ACGACAAGTAATTCCGAACGAAG 59.328 43.478 0.00 0.00 32.78 3.79
424 429 3.641648 ACGACAAGTAATTCCGAACGAA 58.358 40.909 0.00 0.00 34.14 3.85
425 430 3.287312 ACGACAAGTAATTCCGAACGA 57.713 42.857 0.00 0.00 0.00 3.85
426 431 4.406069 TCTACGACAAGTAATTCCGAACG 58.594 43.478 0.00 0.00 34.45 3.95
427 432 5.219914 CGTTCTACGACAAGTAATTCCGAAC 60.220 44.000 0.00 0.00 46.05 3.95
428 433 4.853196 CGTTCTACGACAAGTAATTCCGAA 59.147 41.667 0.00 0.00 46.05 4.30
429 434 4.406069 CGTTCTACGACAAGTAATTCCGA 58.594 43.478 0.00 0.00 46.05 4.55
430 435 3.545078 CCGTTCTACGACAAGTAATTCCG 59.455 47.826 0.05 0.00 46.05 4.30
431 436 4.737054 TCCGTTCTACGACAAGTAATTCC 58.263 43.478 0.05 0.00 46.05 3.01
432 437 4.797349 CCTCCGTTCTACGACAAGTAATTC 59.203 45.833 0.05 0.00 46.05 2.17
433 438 4.381292 CCCTCCGTTCTACGACAAGTAATT 60.381 45.833 0.05 0.00 46.05 1.40
434 439 3.129988 CCCTCCGTTCTACGACAAGTAAT 59.870 47.826 0.05 0.00 46.05 1.89
435 440 2.489329 CCCTCCGTTCTACGACAAGTAA 59.511 50.000 0.05 0.00 46.05 2.24
436 441 2.086869 CCCTCCGTTCTACGACAAGTA 58.913 52.381 0.05 0.00 46.05 2.24
437 442 0.886563 CCCTCCGTTCTACGACAAGT 59.113 55.000 0.05 0.00 46.05 3.16
438 443 1.132643 CTCCCTCCGTTCTACGACAAG 59.867 57.143 0.05 0.00 46.05 3.16
439 444 1.171308 CTCCCTCCGTTCTACGACAA 58.829 55.000 0.05 0.00 46.05 3.18
440 445 0.037303 ACTCCCTCCGTTCTACGACA 59.963 55.000 0.05 0.00 46.05 4.35
441 446 2.029838 TACTCCCTCCGTTCTACGAC 57.970 55.000 0.05 0.00 46.05 4.34
442 447 3.287867 AATACTCCCTCCGTTCTACGA 57.712 47.619 0.05 0.00 46.05 3.43
443 448 4.382345 AAAATACTCCCTCCGTTCTACG 57.618 45.455 0.00 0.00 42.11 3.51
444 449 5.727434 TCAAAAATACTCCCTCCGTTCTAC 58.273 41.667 0.00 0.00 0.00 2.59
445 450 6.211986 TCTTCAAAAATACTCCCTCCGTTCTA 59.788 38.462 0.00 0.00 0.00 2.10
446 451 4.903045 TCAAAAATACTCCCTCCGTTCT 57.097 40.909 0.00 0.00 0.00 3.01
447 452 5.243207 TCTTCAAAAATACTCCCTCCGTTC 58.757 41.667 0.00 0.00 0.00 3.95
448 453 5.237236 TCTTCAAAAATACTCCCTCCGTT 57.763 39.130 0.00 0.00 0.00 4.44
449 454 4.903045 TCTTCAAAAATACTCCCTCCGT 57.097 40.909 0.00 0.00 0.00 4.69
450 455 5.675538 AGATCTTCAAAAATACTCCCTCCG 58.324 41.667 0.00 0.00 0.00 4.63
451 456 5.755861 CGAGATCTTCAAAAATACTCCCTCC 59.244 44.000 0.00 0.00 0.00 4.30
452 457 6.342111 ACGAGATCTTCAAAAATACTCCCTC 58.658 40.000 0.00 0.00 0.00 4.30
453 458 6.301169 ACGAGATCTTCAAAAATACTCCCT 57.699 37.500 0.00 0.00 0.00 4.20
454 459 5.232414 CGACGAGATCTTCAAAAATACTCCC 59.768 44.000 0.00 0.00 0.00 4.30
455 460 6.034591 TCGACGAGATCTTCAAAAATACTCC 58.965 40.000 0.00 0.00 0.00 3.85
456 461 6.967767 TCTCGACGAGATCTTCAAAAATACTC 59.032 38.462 23.27 0.00 33.35 2.59
457 462 6.748198 GTCTCGACGAGATCTTCAAAAATACT 59.252 38.462 28.81 0.00 40.98 2.12
458 463 6.913874 GTCTCGACGAGATCTTCAAAAATAC 58.086 40.000 28.81 9.46 40.98 1.89
563 568 8.991783 ATCAATTAGATGACATCAGTGGAATT 57.008 30.769 17.57 10.87 35.06 2.17
579 584 9.407380 ACTATACATTTTGCCACATCAATTAGA 57.593 29.630 0.00 0.00 0.00 2.10
583 588 9.970395 CATTACTATACATTTTGCCACATCAAT 57.030 29.630 0.00 0.00 0.00 2.57
584 589 8.412456 CCATTACTATACATTTTGCCACATCAA 58.588 33.333 0.00 0.00 0.00 2.57
585 590 7.777440 TCCATTACTATACATTTTGCCACATCA 59.223 33.333 0.00 0.00 0.00 3.07
586 591 8.165239 TCCATTACTATACATTTTGCCACATC 57.835 34.615 0.00 0.00 0.00 3.06
587 592 7.231317 CCTCCATTACTATACATTTTGCCACAT 59.769 37.037 0.00 0.00 0.00 3.21
588 593 6.545666 CCTCCATTACTATACATTTTGCCACA 59.454 38.462 0.00 0.00 0.00 4.17
589 594 6.546034 ACCTCCATTACTATACATTTTGCCAC 59.454 38.462 0.00 0.00 0.00 5.01
590 595 6.545666 CACCTCCATTACTATACATTTTGCCA 59.454 38.462 0.00 0.00 0.00 4.92
591 596 6.546034 ACACCTCCATTACTATACATTTTGCC 59.454 38.462 0.00 0.00 0.00 4.52
592 597 7.568199 ACACCTCCATTACTATACATTTTGC 57.432 36.000 0.00 0.00 0.00 3.68
593 598 9.787532 CAAACACCTCCATTACTATACATTTTG 57.212 33.333 0.00 0.00 0.00 2.44
594 599 8.966868 CCAAACACCTCCATTACTATACATTTT 58.033 33.333 0.00 0.00 0.00 1.82
595 600 8.333235 TCCAAACACCTCCATTACTATACATTT 58.667 33.333 0.00 0.00 0.00 2.32
596 601 7.773690 GTCCAAACACCTCCATTACTATACATT 59.226 37.037 0.00 0.00 0.00 2.71
597 602 7.280356 GTCCAAACACCTCCATTACTATACAT 58.720 38.462 0.00 0.00 0.00 2.29
598 603 6.352394 GGTCCAAACACCTCCATTACTATACA 60.352 42.308 0.00 0.00 33.08 2.29
599 604 6.053650 GGTCCAAACACCTCCATTACTATAC 58.946 44.000 0.00 0.00 33.08 1.47
600 605 5.727279 TGGTCCAAACACCTCCATTACTATA 59.273 40.000 0.00 0.00 37.34 1.31
601 606 4.538490 TGGTCCAAACACCTCCATTACTAT 59.462 41.667 0.00 0.00 37.34 2.12
602 607 3.911260 TGGTCCAAACACCTCCATTACTA 59.089 43.478 0.00 0.00 37.34 1.82
603 608 2.714250 TGGTCCAAACACCTCCATTACT 59.286 45.455 0.00 0.00 37.34 2.24
604 609 3.149005 TGGTCCAAACACCTCCATTAC 57.851 47.619 0.00 0.00 37.34 1.89
605 610 3.075283 ACATGGTCCAAACACCTCCATTA 59.925 43.478 0.00 0.00 36.86 1.90
606 611 2.158325 ACATGGTCCAAACACCTCCATT 60.158 45.455 0.00 0.00 36.86 3.16
607 612 1.428912 ACATGGTCCAAACACCTCCAT 59.571 47.619 0.00 0.00 39.14 3.41
608 613 0.850100 ACATGGTCCAAACACCTCCA 59.150 50.000 0.00 0.00 37.34 3.86
609 614 1.613437 CAACATGGTCCAAACACCTCC 59.387 52.381 0.00 0.00 37.34 4.30
610 615 1.000274 GCAACATGGTCCAAACACCTC 60.000 52.381 0.00 0.00 37.34 3.85
611 616 1.039856 GCAACATGGTCCAAACACCT 58.960 50.000 0.00 0.00 37.34 4.00
612 617 1.039856 AGCAACATGGTCCAAACACC 58.960 50.000 0.00 0.00 36.90 4.16
613 618 2.100584 TGAAGCAACATGGTCCAAACAC 59.899 45.455 0.00 0.00 0.00 3.32
614 619 2.382882 TGAAGCAACATGGTCCAAACA 58.617 42.857 0.00 0.00 0.00 2.83
615 620 3.319755 CATGAAGCAACATGGTCCAAAC 58.680 45.455 13.06 0.00 42.45 2.93
616 621 2.288948 GCATGAAGCAACATGGTCCAAA 60.289 45.455 19.42 0.00 45.14 3.28
617 622 1.273048 GCATGAAGCAACATGGTCCAA 59.727 47.619 19.42 0.00 45.14 3.53
618 623 0.889994 GCATGAAGCAACATGGTCCA 59.110 50.000 19.42 0.00 45.14 4.02
619 624 3.727419 GCATGAAGCAACATGGTCC 57.273 52.632 19.42 5.01 45.14 4.46
620 625 1.403249 GTGGCATGAAGCAACATGGTC 60.403 52.381 19.42 8.09 46.95 4.02
621 626 0.604578 GTGGCATGAAGCAACATGGT 59.395 50.000 19.42 0.00 46.95 3.55
622 627 3.429043 GTGGCATGAAGCAACATGG 57.571 52.632 19.42 6.70 46.95 3.66
629 634 0.883153 TCACACATGTGGCATGAAGC 59.117 50.000 28.64 0.00 45.65 3.86
630 635 2.161012 GTCTCACACATGTGGCATGAAG 59.839 50.000 28.64 15.88 45.65 3.02
631 636 2.153645 GTCTCACACATGTGGCATGAA 58.846 47.619 28.64 11.67 45.65 2.57
632 637 1.348696 AGTCTCACACATGTGGCATGA 59.651 47.619 28.64 21.02 45.65 3.07
633 638 1.817357 AGTCTCACACATGTGGCATG 58.183 50.000 28.64 18.10 45.65 4.06
634 639 2.574006 AAGTCTCACACATGTGGCAT 57.426 45.000 28.64 6.19 45.65 4.40
635 640 3.007831 TGATAAGTCTCACACATGTGGCA 59.992 43.478 28.64 14.00 45.65 4.92
636 641 3.599343 TGATAAGTCTCACACATGTGGC 58.401 45.455 28.64 13.22 45.65 5.01
637 642 6.403964 CCAAATGATAAGTCTCACACATGTGG 60.404 42.308 28.64 17.57 45.65 4.17
638 643 6.549061 CCAAATGATAAGTCTCACACATGTG 58.451 40.000 24.25 24.25 46.91 3.21
639 644 5.124457 GCCAAATGATAAGTCTCACACATGT 59.876 40.000 0.00 0.00 0.00 3.21
640 645 5.356190 AGCCAAATGATAAGTCTCACACATG 59.644 40.000 0.00 0.00 0.00 3.21
641 646 5.503927 AGCCAAATGATAAGTCTCACACAT 58.496 37.500 0.00 0.00 0.00 3.21
642 647 4.910195 AGCCAAATGATAAGTCTCACACA 58.090 39.130 0.00 0.00 0.00 3.72
643 648 5.886960 AAGCCAAATGATAAGTCTCACAC 57.113 39.130 0.00 0.00 0.00 3.82
644 649 6.899393 AAAAGCCAAATGATAAGTCTCACA 57.101 33.333 0.00 0.00 0.00 3.58
665 670 2.917971 CACGCGTGGTTCAAAAGAAAAA 59.082 40.909 31.15 0.00 0.00 1.94
666 671 2.095161 ACACGCGTGGTTCAAAAGAAAA 60.095 40.909 39.21 0.00 34.19 2.29
667 672 1.469308 ACACGCGTGGTTCAAAAGAAA 59.531 42.857 39.21 0.00 34.19 2.52
668 673 1.088306 ACACGCGTGGTTCAAAAGAA 58.912 45.000 39.21 0.00 34.19 2.52
669 674 1.088306 AACACGCGTGGTTCAAAAGA 58.912 45.000 39.21 0.00 34.19 2.52
670 675 1.902840 AAACACGCGTGGTTCAAAAG 58.097 45.000 39.21 14.75 35.13 2.27
671 676 3.694535 ATAAACACGCGTGGTTCAAAA 57.305 38.095 42.58 27.40 40.14 2.44
672 677 5.359716 AATATAAACACGCGTGGTTCAAA 57.640 34.783 42.58 28.79 40.14 2.69
673 678 5.049612 TCAAATATAAACACGCGTGGTTCAA 60.050 36.000 42.58 31.19 40.14 2.69
674 679 4.451435 TCAAATATAAACACGCGTGGTTCA 59.549 37.500 42.58 31.26 40.14 3.18
675 680 4.960329 TCAAATATAAACACGCGTGGTTC 58.040 39.130 42.58 0.00 40.14 3.62
676 681 5.359716 TTCAAATATAAACACGCGTGGTT 57.640 34.783 40.46 40.46 43.82 3.67
677 682 5.359716 TTTCAAATATAAACACGCGTGGT 57.640 34.783 39.21 34.01 34.19 4.16
678 683 5.854338 ACTTTTCAAATATAAACACGCGTGG 59.146 36.000 39.21 23.04 34.19 4.94
679 684 6.904954 ACTTTTCAAATATAAACACGCGTG 57.095 33.333 35.99 35.99 0.00 5.34
680 685 8.068977 TGTAACTTTTCAAATATAAACACGCGT 58.931 29.630 5.58 5.58 0.00 6.01
681 686 8.424628 TGTAACTTTTCAAATATAAACACGCG 57.575 30.769 3.53 3.53 0.00 6.01
694 699 7.038729 TGGCCCAATCATATTGTAACTTTTCAA 60.039 33.333 0.00 0.00 0.00 2.69
697 702 6.351796 GGTGGCCCAATCATATTGTAACTTTT 60.352 38.462 0.00 0.00 0.00 2.27
710 715 1.207488 ACTAGCAGGTGGCCCAATCA 61.207 55.000 0.00 0.00 46.50 2.57
854 895 4.041762 GTTGGATGCGGGGTGGGA 62.042 66.667 0.00 0.00 0.00 4.37
916 958 4.699522 GTTCGGAAGCCAGGCGGT 62.700 66.667 5.55 0.00 33.28 5.68
1012 1055 2.484770 CCAGACGGGTGAGAAAAGACAA 60.485 50.000 0.00 0.00 0.00 3.18
1035 1078 2.076100 ACGAAGCGAGATTTTGCATGA 58.924 42.857 0.00 0.00 36.07 3.07
1057 1100 0.739813 CGAAACATCCCCACTCCGAC 60.740 60.000 0.00 0.00 0.00 4.79
1064 1107 0.327924 AGCATCACGAAACATCCCCA 59.672 50.000 0.00 0.00 0.00 4.96
1084 1127 2.507944 CCGAGGATGCCCCAAGAG 59.492 66.667 0.00 0.00 37.41 2.85
1126 1169 2.655526 ATCAGTGGCTCGCATCGCAT 62.656 55.000 0.00 0.00 0.00 4.73
1131 1174 1.069204 ACGATAATCAGTGGCTCGCAT 59.931 47.619 0.00 0.00 32.81 4.73
1152 1195 2.611292 CCTGCAAGATTCGGATCAAGAC 59.389 50.000 6.44 0.00 34.07 3.01
1235 1278 1.270826 GGGAAGCAAAGAGGTTTCAGC 59.729 52.381 0.00 0.00 38.24 4.26
1247 1290 3.253188 CAGAACGAATCAAAGGGAAGCAA 59.747 43.478 0.00 0.00 0.00 3.91
1258 1301 3.254060 GCACTAAGAGCAGAACGAATCA 58.746 45.455 0.00 0.00 0.00 2.57
1296 1339 1.993701 TTCTCCTGTGCCAGCAACCA 61.994 55.000 0.00 0.00 0.00 3.67
1634 1687 5.568620 AGAACCACAGTGAGAAGGTTATT 57.431 39.130 0.62 0.00 43.94 1.40
1640 1693 6.867662 AAACAATAGAACCACAGTGAGAAG 57.132 37.500 0.62 0.00 0.00 2.85
1653 1707 7.202016 ACGCAAATGAGAGAAAACAATAGAA 57.798 32.000 0.00 0.00 0.00 2.10
1659 1713 5.940192 ACATACGCAAATGAGAGAAAACA 57.060 34.783 2.46 0.00 0.00 2.83
1727 1781 9.448438 TGAATGACATAAGTTAACATACAGCTT 57.552 29.630 8.61 0.00 0.00 3.74
1820 1877 3.059884 ACATCACAGCGTTGTAAGTCTG 58.940 45.455 4.02 1.40 35.25 3.51
1821 1878 3.243737 TGACATCACAGCGTTGTAAGTCT 60.244 43.478 22.01 2.00 35.25 3.24
1822 1879 3.057019 TGACATCACAGCGTTGTAAGTC 58.943 45.455 17.81 17.81 35.25 3.01
1823 1880 3.106242 TGACATCACAGCGTTGTAAGT 57.894 42.857 4.02 3.91 35.25 2.24
1824 1881 4.668576 ATTGACATCACAGCGTTGTAAG 57.331 40.909 4.02 0.42 35.25 2.34
1825 1882 4.991687 TGTATTGACATCACAGCGTTGTAA 59.008 37.500 4.02 0.00 35.25 2.41
1826 1883 4.561105 TGTATTGACATCACAGCGTTGTA 58.439 39.130 4.02 0.00 35.25 2.41
1827 1884 3.398406 TGTATTGACATCACAGCGTTGT 58.602 40.909 0.00 0.00 38.31 3.32
1828 1885 4.604843 ATGTATTGACATCACAGCGTTG 57.395 40.909 0.00 0.00 43.01 4.10
1838 1895 7.523293 TCAAACAGTTTGGATGTATTGACAT 57.477 32.000 23.14 0.00 42.94 3.06
1839 1896 6.951062 TCAAACAGTTTGGATGTATTGACA 57.049 33.333 23.14 0.00 40.98 3.58
1840 1897 7.592938 TCATCAAACAGTTTGGATGTATTGAC 58.407 34.615 23.14 0.00 40.98 3.18
1841 1898 7.757941 TCATCAAACAGTTTGGATGTATTGA 57.242 32.000 23.14 12.75 40.98 2.57
1842 1899 8.865978 CAATCATCAAACAGTTTGGATGTATTG 58.134 33.333 23.14 23.27 40.98 1.90
1843 1900 8.587608 ACAATCATCAAACAGTTTGGATGTATT 58.412 29.630 23.14 19.06 40.98 1.89
1844 1901 8.125978 ACAATCATCAAACAGTTTGGATGTAT 57.874 30.769 23.14 15.91 40.98 2.29
1845 1902 7.523293 ACAATCATCAAACAGTTTGGATGTA 57.477 32.000 23.14 14.82 40.98 2.29
1846 1903 6.409524 ACAATCATCAAACAGTTTGGATGT 57.590 33.333 23.14 17.13 40.98 3.06
1847 1904 7.718272 AAACAATCATCAAACAGTTTGGATG 57.282 32.000 23.14 21.88 40.98 3.51
1873 1930 9.292846 CATCAAGCGAAAATTCATCAAAGAATA 57.707 29.630 0.00 0.00 37.24 1.75
1874 1931 7.816031 ACATCAAGCGAAAATTCATCAAAGAAT 59.184 29.630 0.00 0.00 39.81 2.40
1875 1932 7.147312 ACATCAAGCGAAAATTCATCAAAGAA 58.853 30.769 0.00 0.00 0.00 2.52
1876 1933 6.680810 ACATCAAGCGAAAATTCATCAAAGA 58.319 32.000 0.00 0.00 0.00 2.52
1877 1934 6.583427 TGACATCAAGCGAAAATTCATCAAAG 59.417 34.615 0.00 0.00 0.00 2.77
1878 1935 6.445475 TGACATCAAGCGAAAATTCATCAAA 58.555 32.000 0.00 0.00 0.00 2.69
1879 1936 6.011476 TGACATCAAGCGAAAATTCATCAA 57.989 33.333 0.00 0.00 0.00 2.57
1880 1937 5.625921 TGACATCAAGCGAAAATTCATCA 57.374 34.783 0.00 0.00 0.00 3.07
1881 1938 7.274033 TCAATTGACATCAAGCGAAAATTCATC 59.726 33.333 3.38 0.00 39.47 2.92
1882 1939 7.092079 TCAATTGACATCAAGCGAAAATTCAT 58.908 30.769 3.38 0.00 39.47 2.57
1883 1940 6.445475 TCAATTGACATCAAGCGAAAATTCA 58.555 32.000 3.38 0.00 39.47 2.57
1884 1941 6.034256 CCTCAATTGACATCAAGCGAAAATTC 59.966 38.462 3.38 0.00 39.47 2.17
1885 1942 5.865552 CCTCAATTGACATCAAGCGAAAATT 59.134 36.000 3.38 0.00 39.47 1.82
1886 1943 5.047802 ACCTCAATTGACATCAAGCGAAAAT 60.048 36.000 3.38 0.00 39.47 1.82
1887 1944 4.278170 ACCTCAATTGACATCAAGCGAAAA 59.722 37.500 3.38 0.00 39.47 2.29
1888 1945 3.820467 ACCTCAATTGACATCAAGCGAAA 59.180 39.130 3.38 0.00 39.47 3.46
1889 1946 3.189080 CACCTCAATTGACATCAAGCGAA 59.811 43.478 3.38 0.00 39.47 4.70
1890 1947 2.743664 CACCTCAATTGACATCAAGCGA 59.256 45.455 3.38 0.00 39.47 4.93
1891 1948 2.485426 ACACCTCAATTGACATCAAGCG 59.515 45.455 3.38 0.00 39.47 4.68
1892 1949 3.829948 CACACCTCAATTGACATCAAGC 58.170 45.455 3.38 0.00 39.47 4.01
1893 1950 3.253921 TGCACACCTCAATTGACATCAAG 59.746 43.478 3.38 0.00 39.47 3.02
1894 1951 3.220940 TGCACACCTCAATTGACATCAA 58.779 40.909 3.38 0.00 40.51 2.57
1895 1952 2.861274 TGCACACCTCAATTGACATCA 58.139 42.857 3.38 0.00 0.00 3.07
1896 1953 3.921119 TTGCACACCTCAATTGACATC 57.079 42.857 3.38 0.00 0.00 3.06
1897 1954 3.056393 CCATTGCACACCTCAATTGACAT 60.056 43.478 3.38 0.00 32.30 3.06
1898 1955 2.296752 CCATTGCACACCTCAATTGACA 59.703 45.455 3.38 0.00 32.30 3.58
1899 1956 2.297033 ACCATTGCACACCTCAATTGAC 59.703 45.455 3.38 0.00 32.30 3.18
1900 1957 2.596346 ACCATTGCACACCTCAATTGA 58.404 42.857 8.12 8.12 32.30 2.57
1901 1958 3.507233 ACTACCATTGCACACCTCAATTG 59.493 43.478 0.00 0.00 32.30 2.32
1902 1959 3.507233 CACTACCATTGCACACCTCAATT 59.493 43.478 0.00 0.00 32.30 2.32
1903 1960 3.084039 CACTACCATTGCACACCTCAAT 58.916 45.455 0.00 0.00 34.74 2.57
1904 1961 2.503331 CACTACCATTGCACACCTCAA 58.497 47.619 0.00 0.00 0.00 3.02
1905 1962 1.881925 GCACTACCATTGCACACCTCA 60.882 52.381 0.00 0.00 39.93 3.86
1906 1963 0.804989 GCACTACCATTGCACACCTC 59.195 55.000 0.00 0.00 39.93 3.85
1907 1964 0.401738 AGCACTACCATTGCACACCT 59.598 50.000 0.00 0.00 42.83 4.00
1908 1965 2.009774 CTAGCACTACCATTGCACACC 58.990 52.381 0.00 0.00 42.83 4.16
1909 1966 2.673368 GTCTAGCACTACCATTGCACAC 59.327 50.000 0.00 0.00 42.83 3.82
1910 1967 2.567169 AGTCTAGCACTACCATTGCACA 59.433 45.455 0.00 0.00 42.83 4.57
1911 1968 3.252974 AGTCTAGCACTACCATTGCAC 57.747 47.619 0.00 0.00 42.83 4.57
1912 1969 3.981071 AAGTCTAGCACTACCATTGCA 57.019 42.857 0.00 0.00 42.83 4.08
1913 1970 5.463724 GTCATAAGTCTAGCACTACCATTGC 59.536 44.000 0.00 0.00 40.52 3.56
1914 1971 5.986135 GGTCATAAGTCTAGCACTACCATTG 59.014 44.000 0.00 0.00 32.17 2.82
1915 1972 5.070580 GGGTCATAAGTCTAGCACTACCATT 59.929 44.000 11.12 0.00 33.17 3.16
1916 1973 4.589374 GGGTCATAAGTCTAGCACTACCAT 59.411 45.833 11.12 0.13 33.17 3.55
1917 1974 3.958798 GGGTCATAAGTCTAGCACTACCA 59.041 47.826 11.12 0.00 33.17 3.25
1918 1975 4.038162 CAGGGTCATAAGTCTAGCACTACC 59.962 50.000 0.00 0.00 32.30 3.18
1919 1976 4.645588 ACAGGGTCATAAGTCTAGCACTAC 59.354 45.833 0.00 0.00 32.30 2.73
1920 1977 4.645136 CACAGGGTCATAAGTCTAGCACTA 59.355 45.833 0.00 0.00 32.30 2.74
1921 1978 3.449018 CACAGGGTCATAAGTCTAGCACT 59.551 47.826 0.00 0.00 36.64 4.40
1922 1979 3.447586 TCACAGGGTCATAAGTCTAGCAC 59.552 47.826 0.00 0.00 0.00 4.40
1923 1980 3.708451 TCACAGGGTCATAAGTCTAGCA 58.292 45.455 0.00 0.00 0.00 3.49
1924 1981 4.100189 ACATCACAGGGTCATAAGTCTAGC 59.900 45.833 0.00 0.00 0.00 3.42
1934 1991 4.842531 ATGTATTGACATCACAGGGTCA 57.157 40.909 0.00 0.00 43.01 4.02
2060 2119 7.902920 ACATTTAATCCAAATCATAGCACCT 57.097 32.000 0.00 0.00 34.49 4.00
2125 2186 9.488762 ACTGCATATTATTAGGCCTAGTACATA 57.511 33.333 14.22 14.11 34.24 2.29
2147 2208 6.593770 CCCTCCCAAACAAAATAAATAACTGC 59.406 38.462 0.00 0.00 0.00 4.40
2148 2209 7.676004 ACCCTCCCAAACAAAATAAATAACTG 58.324 34.615 0.00 0.00 0.00 3.16
2150 2211 7.672240 TGACCCTCCCAAACAAAATAAATAAC 58.328 34.615 0.00 0.00 0.00 1.89
2210 2279 9.120538 TCTTAGCAGTCTTTGTTTGATTACTTT 57.879 29.630 0.00 0.00 0.00 2.66
2239 2308 5.935789 TGAAACTAGTTGGGATCGGTAAAAG 59.064 40.000 9.34 0.00 0.00 2.27
2267 2336 7.015877 CAGTTCAACGGATTAGCTTTTAAGTC 58.984 38.462 0.00 0.00 0.00 3.01
2279 2348 5.160607 TCCTTGATACAGTTCAACGGATT 57.839 39.130 0.00 0.00 32.66 3.01
2280 2349 4.223032 ACTCCTTGATACAGTTCAACGGAT 59.777 41.667 0.00 0.00 34.92 4.18
2296 2365 5.104941 TGACATACACCTCCATTACTCCTTG 60.105 44.000 0.00 0.00 0.00 3.61
2340 2409 7.013559 TCCACAATGCCATAAGATGATTTACAG 59.986 37.037 0.00 0.00 0.00 2.74
2374 2443 6.183360 CCTCACAACAAACAACCTAATCAGTT 60.183 38.462 0.00 0.00 0.00 3.16
2438 2520 8.087750 TGCTGAAATATAAGTTTGAAAGTTGGG 58.912 33.333 8.19 0.00 0.00 4.12
2560 2642 3.317993 GCTTCTTGGCCTCAACAGTTTTA 59.682 43.478 3.32 0.00 0.00 1.52
2683 2765 6.012658 TGAATTATCAACAAAGTGCCAGAC 57.987 37.500 0.00 0.00 30.99 3.51
2687 2769 7.224557 ACAAACTTGAATTATCAACAAAGTGCC 59.775 33.333 0.00 0.00 40.59 5.01
3055 3137 6.071728 AGCAGAAAAGATGGAAACCAATACAG 60.072 38.462 0.00 0.00 36.95 2.74
3075 3161 5.302360 ACGGTTAGTCAACAAATAAGCAGA 58.698 37.500 0.00 0.00 36.29 4.26
3088 3174 6.149807 GGAATTGGTCAATAAACGGTTAGTCA 59.850 38.462 0.00 0.00 0.00 3.41
3107 3193 3.181520 CGTTGAAGTTCGCCTAGGAATTG 60.182 47.826 14.75 0.00 0.00 2.32
3114 3200 2.512485 TTGTCGTTGAAGTTCGCCTA 57.488 45.000 0.00 0.00 0.00 3.93
3311 3397 3.769300 ACTTTCAAAACTGGAGCCAAACT 59.231 39.130 0.00 0.00 0.00 2.66
3351 3437 7.054124 TCTTACACTGTTCTTTCCAAGATGTT 58.946 34.615 0.00 0.00 37.38 2.71
3448 3535 5.525378 GCACCCTTGTCTGAAGAATATACTG 59.475 44.000 0.00 0.00 0.00 2.74
3451 3538 4.473196 TGGCACCCTTGTCTGAAGAATATA 59.527 41.667 0.00 0.00 0.00 0.86
3452 3539 3.266772 TGGCACCCTTGTCTGAAGAATAT 59.733 43.478 0.00 0.00 0.00 1.28
3472 3559 6.814506 ACTGAAGATCTCTGAATGTTTTGG 57.185 37.500 0.00 0.00 0.00 3.28
3487 3574 3.791320 TGTCAGGACCCTAACTGAAGAT 58.209 45.455 0.00 0.00 44.53 2.40
3492 3579 2.028020 GGAGTTGTCAGGACCCTAACTG 60.028 54.545 7.28 0.00 32.23 3.16
3495 3582 1.652947 GGGAGTTGTCAGGACCCTAA 58.347 55.000 0.00 0.00 37.75 2.69
3512 3599 1.144936 GTTCGATCTCAGCCTGGGG 59.855 63.158 0.00 0.00 0.00 4.96
3518 3605 2.094494 TGAGGACAAGTTCGATCTCAGC 60.094 50.000 0.00 0.00 0.00 4.26
3576 3663 1.457346 CTAGGGAAGCAGCAACTTGG 58.543 55.000 0.00 0.00 0.00 3.61
3577 3664 1.271597 ACCTAGGGAAGCAGCAACTTG 60.272 52.381 14.81 0.00 0.00 3.16
3594 3690 1.915228 CCGGTCCAATGGATCACCT 59.085 57.895 13.63 0.00 31.02 4.00
3611 3707 1.071699 TGTTCTAGTGGTTCAGTGGCC 59.928 52.381 0.00 0.00 0.00 5.36
3662 3758 3.711704 CCTCAGGCCATACTAGAAAGGAA 59.288 47.826 5.01 0.00 0.00 3.36
3663 3759 3.309296 CCTCAGGCCATACTAGAAAGGA 58.691 50.000 5.01 0.00 0.00 3.36
3664 3760 2.224402 GCCTCAGGCCATACTAGAAAGG 60.224 54.545 3.37 0.00 44.06 3.11
3665 3761 3.118905 GCCTCAGGCCATACTAGAAAG 57.881 52.381 3.37 0.00 44.06 2.62
3727 3835 6.015688 CACCCTGGATTCAAATCATATTGGAG 60.016 42.308 0.00 0.00 37.15 3.86
3728 3836 5.834742 CACCCTGGATTCAAATCATATTGGA 59.165 40.000 0.00 0.00 37.15 3.53
3729 3837 5.011329 CCACCCTGGATTCAAATCATATTGG 59.989 44.000 0.00 1.56 40.96 3.16
3785 3893 7.713507 AGCAGTTACTACTTACAAACATTCACA 59.286 33.333 0.00 0.00 30.26 3.58
3933 4054 9.255304 AGCACGAACACACATAATTTTTAATTT 57.745 25.926 0.00 0.00 0.00 1.82
3934 4055 8.810652 AGCACGAACACACATAATTTTTAATT 57.189 26.923 0.00 0.00 0.00 1.40
3935 4056 8.079203 TGAGCACGAACACACATAATTTTTAAT 58.921 29.630 0.00 0.00 0.00 1.40
3936 4057 7.418408 TGAGCACGAACACACATAATTTTTAA 58.582 30.769 0.00 0.00 0.00 1.52
3937 4058 6.960468 TGAGCACGAACACACATAATTTTTA 58.040 32.000 0.00 0.00 0.00 1.52
3938 4059 5.826586 TGAGCACGAACACACATAATTTTT 58.173 33.333 0.00 0.00 0.00 1.94
3939 4060 5.431420 TGAGCACGAACACACATAATTTT 57.569 34.783 0.00 0.00 0.00 1.82
3940 4061 5.048782 ACATGAGCACGAACACACATAATTT 60.049 36.000 0.00 0.00 0.00 1.82
3941 4062 4.455533 ACATGAGCACGAACACACATAATT 59.544 37.500 0.00 0.00 0.00 1.40
3942 4063 4.002982 ACATGAGCACGAACACACATAAT 58.997 39.130 0.00 0.00 0.00 1.28
3943 4064 3.398406 ACATGAGCACGAACACACATAA 58.602 40.909 0.00 0.00 0.00 1.90
3944 4065 3.038788 ACATGAGCACGAACACACATA 57.961 42.857 0.00 0.00 0.00 2.29
3945 4066 1.882912 ACATGAGCACGAACACACAT 58.117 45.000 0.00 0.00 0.00 3.21
3946 4067 2.131972 GTACATGAGCACGAACACACA 58.868 47.619 0.00 0.00 0.00 3.72
3947 4068 2.155732 CAGTACATGAGCACGAACACAC 59.844 50.000 0.00 0.00 0.00 3.82
3948 4069 2.403259 CAGTACATGAGCACGAACACA 58.597 47.619 0.00 0.00 0.00 3.72
3949 4070 1.726791 CCAGTACATGAGCACGAACAC 59.273 52.381 0.00 0.00 0.00 3.32
3950 4071 1.616374 TCCAGTACATGAGCACGAACA 59.384 47.619 0.00 0.00 0.00 3.18
3951 4072 2.363788 TCCAGTACATGAGCACGAAC 57.636 50.000 0.00 0.00 0.00 3.95
3952 4073 3.699538 ACTATCCAGTACATGAGCACGAA 59.300 43.478 0.00 0.00 31.45 3.85
3953 4074 3.066760 CACTATCCAGTACATGAGCACGA 59.933 47.826 0.00 0.00 32.21 4.35
3954 4075 3.066760 TCACTATCCAGTACATGAGCACG 59.933 47.826 0.00 0.00 32.21 5.34
3955 4076 4.142160 TGTCACTATCCAGTACATGAGCAC 60.142 45.833 0.00 0.00 32.21 4.40
3956 4077 4.023291 TGTCACTATCCAGTACATGAGCA 58.977 43.478 0.00 0.00 32.21 4.26
3966 4087 5.633830 ATTTGCTTGTTGTCACTATCCAG 57.366 39.130 0.00 0.00 0.00 3.86
4019 4140 1.539388 CAGCAACTCGCCAATTTACCA 59.461 47.619 0.00 0.00 44.04 3.25
4031 4152 1.555075 TGGTACCATCTCCAGCAACTC 59.445 52.381 11.60 0.00 0.00 3.01
4088 4209 0.888736 TAGTTCGTCGTTCACCCCGA 60.889 55.000 0.00 0.00 0.00 5.14
4092 4213 2.985406 AGAGTAGTTCGTCGTTCACC 57.015 50.000 0.00 0.00 0.00 4.02
4093 4214 5.632445 AAAAAGAGTAGTTCGTCGTTCAC 57.368 39.130 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.